BLASTX nr result
ID: Bupleurum21_contig00000003
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00000003
(2476 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002284518.1| PREDICTED: ATP-dependent Clp protease ATP-bi... 691 0.0
emb|CBI15747.3| unnamed protein product [Vitis vinifera] 691 0.0
sp|P31542.1|CLPAB_SOLLC RecName: Full=ATP-dependent Clp protease... 682 0.0
sp|P31541.1|CLPAA_SOLLC RecName: Full=ATP-dependent Clp protease... 675 0.0
ref|NP_568746.1| ATP-dependent Clp protease ATP-binding subunit ... 680 0.0
>ref|XP_002284518.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpA
homolog CD4A, chloroplastic-like [Vitis vinifera]
Length = 923
Score = 691 bits (1782), Expect(2) = 0.0
Identities = 366/444 (82%), Positives = 381/444 (85%), Gaps = 1/444 (0%)
Frame = +2
Query: 2 RTVKMMCTLQTAPSRIRGFSGLRGANALDMIGKSGHNLHSKVAAATSVQRGKGTRVSPKA 181
++VKMMC +Q RIRGFSGLRGANALD + +SGH+ HS+VAAA SV+ GK +R +A
Sbjct: 31 KSVKMMCNVQAPGLRIRGFSGLRGANALDNLVRSGHDFHSRVAAAISVRGGKASRCVARA 90
Query: 182 MFERFTEKAIKVIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDAR 361
MFERFTEKAIKVIMLAQEEARRLGHNFV AAKVLKSMGINLKDAR
Sbjct: 91 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDAR 150
Query: 362 VEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVA 541
VEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGS VA
Sbjct: 151 VEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVA 210
Query: 542 ARVLENLGADPNNIRTQVIRMVGESVEA-GATVGGGSSGNKMPTLEEYGTNLTKLAEEGK 718
ARVLENLGADP+NIRTQVIRMVGES EA GA VGGG++GNKMPTLEEYGTNLTKLAEEGK
Sbjct: 211 ARVLENLGADPSNIRTQVIRMVGESTEAVGAGVGGGTTGNKMPTLEEYGTNLTKLAEEGK 270
Query: 719 LDPVVGRQPQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIATGDVPETIEGKK 898
LDPVVGRQ QIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIA GDVPETIEGKK
Sbjct: 271 LDPVVGRQQQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKK 330
Query: 899 VITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLXXXXXXXXXXXXXX 1078
VITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTL
Sbjct: 331 VITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAAN 390
Query: 1079 XLKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPTVDETIQILKGLRERY 1258
LKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEP+VDETIQILKGLRERY
Sbjct: 391 ILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERY 450
Query: 1259 EIHHKLRYTDEALVSAAQLSYQYI 1330
EIHHKLRYTDEALVSAA+LSYQYI
Sbjct: 451 EIHHKLRYTDEALVSAARLSYQYI 474
Score = 168 bits (426), Expect(2) = 0.0
Identities = 85/93 (91%), Positives = 87/93 (93%)
Frame = +1
Query: 1390 DRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELR 1569
DRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVR QDFEKAGELR
Sbjct: 476 DRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRSQDFEKAGELR 535
Query: 1570 DRETDLKTQISALVDRNKEMTKAETEAGDEGPM 1668
DRE DLK QIS L+D+ KEMTKAETEAGD GPM
Sbjct: 536 DREMDLKAQISTLIDKGKEMTKAETEAGDIGPM 568
Score = 402 bits (1033), Expect = e-109
Identities = 205/221 (92%), Positives = 207/221 (93%)
Frame = +2
Query: 1814 RIIGQDEXXXXXXXXXXXXXXGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEA 1993
R+IGQDE GLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEA
Sbjct: 607 RVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEA 666
Query: 1994 MIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFN 2173
MIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFN
Sbjct: 667 MIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFN 726
Query: 2174 MMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRI 2353
MMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRI
Sbjct: 727 MMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRI 786
Query: 2354 KSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIM 2476
KSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVK+IADIM
Sbjct: 787 KSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKDIADIM 827
>emb|CBI15747.3| unnamed protein product [Vitis vinifera]
Length = 746
Score = 691 bits (1782), Expect(2) = 0.0
Identities = 366/444 (82%), Positives = 381/444 (85%), Gaps = 1/444 (0%)
Frame = +2
Query: 2 RTVKMMCTLQTAPSRIRGFSGLRGANALDMIGKSGHNLHSKVAAATSVQRGKGTRVSPKA 181
++VKMMC +Q RIRGFSGLRGANALD + +SGH+ HS+VAAA SV+ GK +R +A
Sbjct: 79 KSVKMMCNVQAPGLRIRGFSGLRGANALDNLVRSGHDFHSRVAAAISVRGGKASRCVARA 138
Query: 182 MFERFTEKAIKVIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDAR 361
MFERFTEKAIKVIMLAQEEARRLGHNFV AAKVLKSMGINLKDAR
Sbjct: 139 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDAR 198
Query: 362 VEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVA 541
VEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGS VA
Sbjct: 199 VEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVA 258
Query: 542 ARVLENLGADPNNIRTQVIRMVGESVEA-GATVGGGSSGNKMPTLEEYGTNLTKLAEEGK 718
ARVLENLGADP+NIRTQVIRMVGES EA GA VGGG++GNKMPTLEEYGTNLTKLAEEGK
Sbjct: 259 ARVLENLGADPSNIRTQVIRMVGESTEAVGAGVGGGTTGNKMPTLEEYGTNLTKLAEEGK 318
Query: 719 LDPVVGRQPQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIATGDVPETIEGKK 898
LDPVVGRQ QIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIA GDVPETIEGKK
Sbjct: 319 LDPVVGRQQQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKK 378
Query: 899 VITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLXXXXXXXXXXXXXX 1078
VITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTL
Sbjct: 379 VITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAAN 438
Query: 1079 XLKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPTVDETIQILKGLRERY 1258
LKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEP+VDETIQILKGLRERY
Sbjct: 439 ILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERY 498
Query: 1259 EIHHKLRYTDEALVSAAQLSYQYI 1330
EIHHKLRYTDEALVSAA+LSYQYI
Sbjct: 499 EIHHKLRYTDEALVSAARLSYQYI 522
Score = 168 bits (426), Expect(2) = 0.0
Identities = 85/93 (91%), Positives = 87/93 (93%)
Frame = +1
Query: 1390 DRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELR 1569
DRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVR QDFEKAGELR
Sbjct: 524 DRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRSQDFEKAGELR 583
Query: 1570 DRETDLKTQISALVDRNKEMTKAETEAGDEGPM 1668
DRE DLK QIS L+D+ KEMTKAETEAGD GPM
Sbjct: 584 DREMDLKAQISTLIDKGKEMTKAETEAGDIGPM 616
Score = 149 bits (376), Expect = 4e-33
Identities = 75/90 (83%), Positives = 76/90 (84%)
Frame = +2
Query: 1814 RIIGQDEXXXXXXXXXXXXXXGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEA 1993
R+IGQDE GLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEA
Sbjct: 655 RVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEA 714
Query: 1994 MIRLDMSEFMERHTVSKLIGSPPGYVGYTE 2083
MIRLDMSEFMERHTVSKLIGSPPGYVGYTE
Sbjct: 715 MIRLDMSEFMERHTVSKLIGSPPGYVGYTE 744
>sp|P31542.1|CLPAB_SOLLC RecName: Full=ATP-dependent Clp protease ATP-binding subunit clpA
homolog CD4B, chloroplastic; Flags: Precursor
gi|170435|gb|AAA34161.1| ATP-dependent protease (CD4B)
[Solanum lycopersicum]
Length = 923
Score = 682 bits (1759), Expect(2) = 0.0
Identities = 362/444 (81%), Positives = 376/444 (84%), Gaps = 1/444 (0%)
Frame = +2
Query: 2 RTVKMMCTLQTAPSRIRGFSGLRGANALDMIGKSGHNLHSKVAAATSVQRGKGTRVSPKA 181
R V M+C Q++ +R F+GLRG NA+D + +SG L SKVAAAT V+R +G R PKA
Sbjct: 31 RAVTMLCNAQSSSLTLRDFTGLRGCNAIDTLVRSGETLQSKVAAATYVRRPRGCRFVPKA 90
Query: 182 MFERFTEKAIKVIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDAR 361
MFERFTEKAIKVIMLAQEEARRLGHNFV AAKVLKSMGINLKDAR
Sbjct: 91 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDAR 150
Query: 362 VEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVA 541
VEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGS VA
Sbjct: 151 VEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVA 210
Query: 542 ARVLENLGADPNNIRTQVIRMVGESVEA-GATVGGGSSGNKMPTLEEYGTNLTKLAEEGK 718
ARVLENLGADP+NIRTQVIRMVGES EA GA+VGGG+SG KMPTLEEYGTNLTKLAEEGK
Sbjct: 211 ARVLENLGADPSNIRTQVIRMVGESNEAVGASVGGGTSGQKMPTLEEYGTNLTKLAEEGK 270
Query: 719 LDPVVGRQPQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIATGDVPETIEGKK 898
LDPVVGRQPQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIA GDVPETIEGKK
Sbjct: 271 LDPVVGRQPQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKK 330
Query: 899 VITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLXXXXXXXXXXXXXX 1078
VITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTL
Sbjct: 331 VITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAAN 390
Query: 1079 XLKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPTVDETIQILKGLRERY 1258
LKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPTVDETIQILKGLRERY
Sbjct: 391 ILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPTVDETIQILKGLRERY 450
Query: 1259 EIHHKLRYTDEALVSAAQLSYQYI 1330
EIHHKLRYTDE LV+AAQLSYQYI
Sbjct: 451 EIHHKLRYTDEDLVAAAQLSYQYI 474
Score = 165 bits (417), Expect(2) = 0.0
Identities = 81/93 (87%), Positives = 89/93 (95%)
Frame = +1
Query: 1390 DRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELR 1569
DRFLPDKAIDLIDEAGSRVRLRHAQLPEEA+ELEKELRQITKEKNEAVRGQDFEKAGELR
Sbjct: 476 DRFLPDKAIDLIDEAGSRVRLRHAQLPEEAKELEKELRQITKEKNEAVRGQDFEKAGELR 535
Query: 1570 DRETDLKTQISALVDRNKEMTKAETEAGDEGPM 1668
DRE DLK QI+AL+D+NKE++KAE+EA D GP+
Sbjct: 536 DREMDLKAQITALIDKNKEVSKAESEAADTGPL 568
Score = 400 bits (1029), Expect = e-109
Identities = 206/221 (93%), Positives = 206/221 (93%)
Frame = +2
Query: 1814 RIIGQDEXXXXXXXXXXXXXXGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEA 1993
RIIGQDE GLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEA
Sbjct: 607 RIIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEA 666
Query: 1994 MIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFN 2173
MIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFN
Sbjct: 667 MIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFN 726
Query: 2174 MMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRI 2353
MMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLD DEKDSSYNRI
Sbjct: 727 MMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDLDEKDSSYNRI 786
Query: 2354 KSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIM 2476
KSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIM
Sbjct: 787 KSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIM 827
>sp|P31541.1|CLPAA_SOLLC RecName: Full=ATP-dependent Clp protease ATP-binding subunit clpA
homolog CD4A, chloroplastic; Flags: Precursor
gi|170433|gb|AAA34160.1| ATP-dependent protease (CD4A)
[Solanum lycopersicum]
Length = 926
Score = 675 bits (1742), Expect(2) = 0.0
Identities = 359/445 (80%), Positives = 377/445 (84%), Gaps = 2/445 (0%)
Frame = +2
Query: 2 RTVKMMCTLQTAPSRIRGFSGLRGANALD-MIGKSGHNLHSKVAAATSVQRGKGTRVSPK 178
RTV+M+C ++ SR+ F+GLRG NALD ++ KSG LHSKVAAAT V+R +G R PK
Sbjct: 32 RTVRMLCNVKCCSSRLNNFAGLRGCNALDTLLVKSGETLHSKVAAATFVRRPRGCRFVPK 91
Query: 179 AMFERFTEKAIKVIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDA 358
AMFERFTEKAIKVIMLAQEEARRLGHNFV AAKVLKSMGINLKDA
Sbjct: 92 AMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDA 151
Query: 359 RVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXV 538
RVEVEKIIGRGSGF+AVEIPFTPRAKRVLELSLEEARQLGHNYIGS V
Sbjct: 152 RVEVEKIIGRGSGFIAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGV 211
Query: 539 AARVLENLGADPNNIRTQVIRMVGESVEA-GATVGGGSSGNKMPTLEEYGTNLTKLAEEG 715
AARVLENLGADP NIRTQVIRMVGES EA GA+VGGG+SG KMPTLEEYGTNLTKLAEEG
Sbjct: 212 AARVLENLGADPTNIRTQVIRMVGESSEAVGASVGGGTSGLKMPTLEEYGTNLTKLAEEG 271
Query: 716 KLDPVVGRQPQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIATGDVPETIEGK 895
KLDPVVGRQ QIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIA GDVPETIEGK
Sbjct: 272 KLDPVVGRQAQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGK 331
Query: 896 KVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLXXXXXXXXXXXXX 1075
KVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTL
Sbjct: 332 KVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAA 391
Query: 1076 XXLKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPTVDETIQILKGLRER 1255
LKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEP+VDETIQILKGLRER
Sbjct: 392 NILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRER 451
Query: 1256 YEIHHKLRYTDEALVSAAQLSYQYI 1330
YEIHHKL YTDEA+ +AA+LS+QYI
Sbjct: 452 YEIHHKLHYTDEAIEAAAKLSHQYI 476
Score = 164 bits (414), Expect(2) = 0.0
Identities = 84/94 (89%), Positives = 89/94 (94%), Gaps = 1/94 (1%)
Frame = +1
Query: 1390 DRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELR 1569
DRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELR
Sbjct: 478 DRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELR 537
Query: 1570 DRETDLKTQISALVDRNKEMTKAETEAGD-EGPM 1668
DRE DLK QISAL+D+NKE +KAE+EAGD GP+
Sbjct: 538 DREMDLKAQISALIDKNKEKSKAESEAGDAAGPI 571
Score = 397 bits (1019), Expect = e-107
Identities = 202/221 (91%), Positives = 205/221 (92%)
Frame = +2
Query: 1814 RIIGQDEXXXXXXXXXXXXXXGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEA 1993
R+IGQDE GLKNPNRPIASFIFSGPTGVGKSELAK+LA YYFGSEEA
Sbjct: 610 RVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKSLATYYFGSEEA 669
Query: 1994 MIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFN 2173
MIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFN
Sbjct: 670 MIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFN 729
Query: 2174 MMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRI 2353
MMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLD+DEKDSSYNRI
Sbjct: 730 MMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDFDEKDSSYNRI 789
Query: 2354 KSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIM 2476
KSLVTEELKQYFRPEFLNRL EMIVFRQLTKLEVKEIADIM
Sbjct: 790 KSLVTEELKQYFRPEFLNRLSEMIVFRQLTKLEVKEIADIM 830
>ref|NP_568746.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Arabidopsis
thaliana] gi|75170759|sp|Q9FI56.1|CLPC1_ARATH RecName:
Full=Chaperone protein ClpC1, chloroplastic; AltName:
Full=ATP-dependent Clp protease ATP-binding subunit ClpC
homolog 1; AltName: Full=Casein lytic proteinase C1;
AltName: Full=Protein DE-REGULATED CAO ACCUMULATION 1;
AltName: Full=Protein IRON-RESCUED MUTANT 1; Flags:
Precursor gi|9758239|dbj|BAB08738.1| ATP-dependent Clp
protease, ATP-binding subunit [Arabidopsis thaliana]
gi|20856956|gb|AAM26692.1| AT5g50920/K3K7_7 [Arabidopsis
thaliana] gi|110742601|dbj|BAE99213.1| ATP-dependent Clp
protease [Arabidopsis thaliana]
gi|332008628|gb|AED96011.1| ATP-dependent Clp protease
ATP-binding subunit ClpC [Arabidopsis thaliana]
Length = 929
Score = 680 bits (1754), Expect(2) = 0.0
Identities = 360/444 (81%), Positives = 377/444 (84%), Gaps = 1/444 (0%)
Frame = +2
Query: 2 RTVKMMCT-LQTAPSRIRGFSGLRGANALDMIGKSGHNLHSKVAAATSVQRGKGTRVSPK 178
R+VKMMC+ LQ + R++GF GLRG NALD +GKS + HSKV A +V +GK +R + K
Sbjct: 33 RSVKMMCSQLQVSGLRMQGFMGLRGNNALDTLGKSRQDFHSKVRQAMNVPKGKASRFTVK 92
Query: 179 AMFERFTEKAIKVIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDA 358
AMFERFTEKAIKVIMLAQEEARRLGHNFV AAKVLKSMGINLKDA
Sbjct: 93 AMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDA 152
Query: 359 RVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXV 538
RVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGS V
Sbjct: 153 RVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGV 212
Query: 539 AARVLENLGADPNNIRTQVIRMVGESVEAGATVGGGSSGNKMPTLEEYGTNLTKLAEEGK 718
AARVLENLGADP+NIRTQVIRMVGE+ E A VGGGSS NKMPTLEEYGTNLTKLAEEGK
Sbjct: 213 AARVLENLGADPSNIRTQVIRMVGENNEVTANVGGGSSSNKMPTLEEYGTNLTKLAEEGK 272
Query: 719 LDPVVGRQPQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIATGDVPETIEGKK 898
LDPVVGRQPQIERV QILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIA+GDVPETIEGKK
Sbjct: 273 LDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPETIEGKK 332
Query: 899 VITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLXXXXXXXXXXXXXX 1078
VITLDMGLLVAGTKYRGEFEERLKKLMEEI+QSDEIILFIDEVHTL
Sbjct: 333 VITLDMGLLVAGTKYRGEFEERLKKLMEEIRQSDEIILFIDEVHTLIGAGAAEGAIDAAN 392
Query: 1079 XLKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPTVDETIQILKGLRERY 1258
LKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPTVDETIQILKGLRERY
Sbjct: 393 ILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPTVDETIQILKGLRERY 452
Query: 1259 EIHHKLRYTDEALVSAAQLSYQYI 1330
EIHHKLRYTDE+LV+AAQLSYQYI
Sbjct: 453 EIHHKLRYTDESLVAAAQLSYQYI 476
Score = 155 bits (393), Expect(2) = 0.0
Identities = 76/93 (81%), Positives = 86/93 (92%)
Frame = +1
Query: 1390 DRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELR 1569
DRFLPDKAIDLIDEAGSRVRLRHAQ+PEEARELEKELRQITKEKNEAVRGQDFEKAG LR
Sbjct: 478 DRFLPDKAIDLIDEAGSRVRLRHAQVPEEARELEKELRQITKEKNEAVRGQDFEKAGTLR 537
Query: 1570 DRETDLKTQISALVDRNKEMTKAETEAGDEGPM 1668
DRE +L+ ++SA+ + KEM+KAE+E G+EGPM
Sbjct: 538 DREIELRAEVSAIQAKGKEMSKAESETGEEGPM 570
Score = 402 bits (1034), Expect = e-109
Identities = 206/221 (93%), Positives = 207/221 (93%)
Frame = +2
Query: 1814 RIIGQDEXXXXXXXXXXXXXXGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEA 1993
RIIGQDE GLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEA
Sbjct: 609 RIIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEA 668
Query: 1994 MIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFN 2173
MIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFN
Sbjct: 669 MIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFN 728
Query: 2174 MMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRI 2353
MMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRI
Sbjct: 729 MMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRI 788
Query: 2354 KSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIM 2476
KSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADI+
Sbjct: 789 KSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIL 829