BLASTX nr result
ID: Atropa21_contig00043129
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Atropa21_contig00043129
(563 letters)
Database: nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006356603.1| PREDICTED: putative ribonuclease H protein A... 74 5e-14
ref|XP_006367640.1| PREDICTED: putative ribonuclease H protein A... 63 9e-13
ref|XP_006338863.1| PREDICTED: uncharacterized protein LOC102579... 63 9e-13
ref|XP_006355175.1| PREDICTED: putative ribonuclease H protein A... 70 1e-11
ref|XP_006343440.1| PREDICTED: uncharacterized protein LOC102595... 74 2e-11
ref|XP_006354689.1| PREDICTED: uncharacterized protein LOC102605... 57 4e-11
ref|XP_006338209.1| PREDICTED: putative ribonuclease H protein A... 71 2e-10
ref|XP_004228797.1| PREDICTED: putative ribonuclease H protein A... 54 3e-07
>ref|XP_006356603.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
tuberosum]
Length = 885
Score = 73.6 bits (179), Expect(2) = 5e-14
Identities = 36/111 (32%), Positives = 59/111 (53%)
Frame = +1
Query: 226 NLGRSAYGLCLRGAEGNIIYAQTEDLGYGTNXXXXXXXXXXVLKYCKGQNFHNIIFQTD* 405
N G S++G C+R +G++IYA+ + +G TN L+ C + +I +TD
Sbjct: 719 NPGLSSFGFCIRDDKGDLIYAKAKGIGIATNMEAETVAILTALRECSNRKMQKVIIETDS 778
Query: 406 EMVQKILSEGWKPP*NMRTWVDEARKIRNNMVVIFTHTMRERNKLANVLAN 558
++KI+ + W+ P + V+E R+I + TH RE N LA+ LAN
Sbjct: 779 LSLKKIIQQTWRVPWKIAEKVEEIREIMEKIKAKITHIFREGNSLADSLAN 829
Score = 29.6 bits (65), Expect(2) = 5e-14
Identities = 18/83 (21%), Positives = 37/83 (44%), Gaps = 9/83 (10%)
Frame = +2
Query: 5 WQRRTE---------SRVIYQVFATIQTPIQLRNPSIRNIFNKWGDLIKMMEEERTQLKV 157
W+RR R++ V ++ ++ + P I+N+ W +I+ + + + ++ V
Sbjct: 636 WKRRNALKHDSSISWERMVEMVIEVVRKMVKSQFPWIKNMRWTWQAIIQRLNQYKRKIHV 695
Query: 158 AKVIWKFSPLGRCVCNIDKASKG 226
+V WK N D A +G
Sbjct: 696 LRVTWKPPDDHYVKSNTDGACRG 718
>ref|XP_006367640.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
tuberosum]
Length = 1035
Score = 63.2 bits (152), Expect(2) = 9e-13
Identities = 32/113 (28%), Positives = 56/113 (49%)
Frame = +1
Query: 220 KRNLGRSAYGLCLRGAEGNIIYAQTEDLGYGTNXXXXXXXXXXVLKYCKGQNFHNIIFQT 399
K N S+YG C+R G+++YA+ ++G TN L++C + +T
Sbjct: 688 KGNPRMSSYGYCIRDKNGDLLYAEAHNIGETTNMEAEATTVWKALQFCYENGLRKVRLET 747
Query: 400 D*EMVQKILSEGWKPP*NMRTWVDEARKIRNNMVVIFTHTMRERNKLANVLAN 558
D +Q +++ WK P + ++E +I + V H RE N+LA+ +AN
Sbjct: 748 DSLALQNMITRSWKIPWELVEKLEEIHEIMQQIDVQVCHVYREVNQLADFIAN 800
Score = 35.8 bits (81), Expect(2) = 9e-13
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 9/83 (10%)
Frame = +2
Query: 5 WQRR---------TESRVIYQVFATIQTPIQLRNPSIRNIFNKWGDLIKMMEEERTQLKV 157
W+RR T + + YQ + + ++ P I+ + W ++ M++ + L
Sbjct: 607 WKRRNSYRHGKETTYNNMYYQCQLILYQLVTIKFPWIKGLTYHWPQVVGMLQNYKPPLHY 666
Query: 158 AKVIWKFSPLGRCVCNIDKASKG 226
V W+ G CN D ASKG
Sbjct: 667 KVVRWRKPSEGWVTCNTDGASKG 689
>ref|XP_006338863.1| PREDICTED: uncharacterized protein LOC102579795 [Solanum tuberosum]
Length = 778
Score = 63.2 bits (152), Expect(2) = 9e-13
Identities = 35/113 (30%), Positives = 56/113 (49%)
Frame = +1
Query: 220 KRNLGRSAYGLCLRGAEGNIIYAQTEDLGYGTNXXXXXXXXXXVLKYCKGQNFHNIIFQT 399
K N SA G C+R G IY +++LG+ T+ L++C N +I +T
Sbjct: 148 KGNPRPSAGGFCIRNWNGEFIYTTSQELGFKTSLEAEVIAFERGLQFCMSHNLLPVILET 207
Query: 400 D*EMVQKILSEGWKPP*NMRTWVDEARKIRNNMVVIFTHTMRERNKLANVLAN 558
D +V KIL W+ P ++ + + + +R + V +H RE NK+ N AN
Sbjct: 208 DSLIVSKILDGIWETPWSISLLIKKIQWLRRDGQVEVSHVFREGNKVVNYFAN 260
Score = 35.8 bits (81), Expect(2) = 9e-13
Identities = 19/66 (28%), Positives = 30/66 (45%)
Frame = +2
Query: 29 VIYQVFATIQTPIQLRNPSIRNIFNKWGDLIKMMEEERTQLKVAKVIWKFSPLGRCVCNI 208
++ ++ I +R P +RNI W ++K E + L + W +G CN
Sbjct: 84 MLAEITRNIHNLAMVRYPWLRNIPKDWSMMVKFFENYISVLATKVIYWVPPNMGVYKCNT 143
Query: 209 DKASKG 226
D ASKG
Sbjct: 144 DCASKG 149
>ref|XP_006355175.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
tuberosum]
Length = 143
Score = 69.7 bits (169), Expect(2) = 1e-11
Identities = 35/108 (32%), Positives = 55/108 (50%)
Frame = +1
Query: 220 KRNLGRSAYGLCLRGAEGNIIYAQTEDLGYGTNXXXXXXXXXXVLKYCKGQNFHNIIFQT 399
K N +S+YG C+R G ++YA+ + +G TN L+YC Q F + +T
Sbjct: 36 KGNPDQSSYGFCIRNHTGELLYAEVQSIGVTTNMDAESMAIWKALQYCLSQGFQQVSLET 95
Query: 400 D*EMVQKILSEGWKPP*NMRTWVDEARKIRNNMVVIFTHTMRERNKLA 543
D ++ IL WK P + V++ +I ++M V H RE N+LA
Sbjct: 96 DSLTLKNILVRNWKTPWELVERVEDILEIMSHMDVTIKHIFREVNQLA 143
Score = 25.8 bits (55), Expect(2) = 1e-11
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2
Query: 116 LIKMMEEERTQLKVAKVIWKFSPLGRCVCNIDKASKG 226
++ +++ + L V WK +G CN D ASKG
Sbjct: 1 MVALLQSYKPTLYYHVVNWKPPEIGWIKCNTDGASKG 37
>ref|XP_006343440.1| PREDICTED: uncharacterized protein LOC102595406 [Solanum tuberosum]
Length = 866
Score = 73.9 bits (180), Expect = 2e-11
Identities = 39/113 (34%), Positives = 58/113 (51%)
Frame = +1
Query: 220 KRNLGRSAYGLCLRGAEGNIIYAQTEDLGYGTNXXXXXXXXXXVLKYCKGQNFHNIIFQT 399
K N G+S+Y CLR EGN+IYAQ E++ TN + +C + F + +T
Sbjct: 751 KGNPGKSSYAYCLRDQEGNLIYAQAEEIPETTNVEAEAVAIKEAIYHCTTRGFSRVTIET 810
Query: 400 D*EMVQKILSEGWKPP*NMRTWVDEARKIRNNMVVIFTHTMRERNKLANVLAN 558
D +++ IL W+ P N+R V++ + V H RE N LA+ LAN
Sbjct: 811 DSLLLKNILQGNWEIPWNIRIIVEDTLTLMQYSTVNIEHIYREGNTLADYLAN 863
>ref|XP_006354689.1| PREDICTED: uncharacterized protein LOC102605437 [Solanum tuberosum]
Length = 333
Score = 56.6 bits (135), Expect(2) = 4e-11
Identities = 31/107 (28%), Positives = 54/107 (50%)
Frame = +1
Query: 238 SAYGLCLRGAEGNIIYAQTEDLGYGTNXXXXXXXXXXVLKYCKGQNFHNIIFQTD*EMVQ 417
S+YG CLR + G+++Y Q +++ GTN L +C + +TD +++
Sbjct: 182 SSYGFCLRNSVGDLVYVQGKEIQEGTNLEVEAVAIREDLAHCVTKGVMKACLETDSQVLI 241
Query: 418 KILSEGWKPP*NMRTWVDEARKIRNNMVVIFTHTMRERNKLANVLAN 558
KIL+ W+ P ++ +++ + V H RE N LA+ LAN
Sbjct: 242 KILTRIWEVPWSIVVIIEDIWGLFQECHVQIQHVYREGNTLADYLAN 288
Score = 37.0 bits (84), Expect(2) = 4e-11
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 9/82 (10%)
Frame = +2
Query: 5 WQRRTE---------SRVIYQVFATIQTPIQLRNPSIRNIFNKWGDLIKMMEEERTQLKV 157
W+RR + ++Y+V + + + P +++ KW D++ +E+ + +L
Sbjct: 96 WKRRNNLKHGRPSSYNNLVYRVNSDLWKLGRTIYPKLQDFPTKWSDIVACLEKHKPKLYY 155
Query: 158 AKVIWKFSPLGRCVCNIDKASK 223
V WK P G CN D AS+
Sbjct: 156 LPVCWK-PPEGILTCNTDVASR 176
>ref|XP_006338209.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
tuberosum]
Length = 198
Score = 71.2 bits (173), Expect = 2e-10
Identities = 39/113 (34%), Positives = 59/113 (52%)
Frame = +1
Query: 220 KRNLGRSAYGLCLRGAEGNIIYAQTEDLGYGTNXXXXXXXXXXVLKYCKGQNFHNIIFQT 399
K N G SAYG CLR + G++I+ E++G TN ++YC + II ++
Sbjct: 36 KGNPGISAYGYCLRNSNGDLIHVTAENIGITTNVEAEMRAILEAIRYCVNKKMRKIILES 95
Query: 400 D*EMVQKILSEGWKPP*NMRTWVDEARKIRNNMVVIFTHTMRERNKLANVLAN 558
D ++ KI++E WK + DE ++ + V H RE NKLA+ LAN
Sbjct: 96 DSLLMVKIINEAWKVLWVIAEEFDELKQEMTKIEVKTQHIYREGNKLADYLAN 148
>ref|XP_004228797.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
lycopersicum]
Length = 389
Score = 54.3 bits (129), Expect(2) = 3e-07
Identities = 35/113 (30%), Positives = 52/113 (46%), Gaps = 1/113 (0%)
Frame = +1
Query: 220 KRNLGRSAYGLCLRGAEGNIIYAQTEDLGYGTNXXXXXXXXXXVLKYCKGQNFHNIIFQT 399
K N G+ G LR +G +IYA LG+GTN L++C+ F II +
Sbjct: 229 KHNTGKIGGGGILRDHQGKLIYAFAIPLGFGTNNFAEIQAALHGLQWCQQHGFEKIILEV 288
Query: 400 D*EMVQKILSEGWKPP*NMRTWVDEARKIRNNMVVI-FTHTMRERNKLANVLA 555
D E++ K + P ++ + + I N M V H RE N A++LA
Sbjct: 289 DSELLHKWIINKSSVPWRCLHYIQQIQNISNKMEVFQCKHIYREANGTADLLA 341
Score = 26.2 bits (56), Expect(2) = 3e-07
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +2
Query: 101 NKWGDLIKMMEEERTQLKVAKVIWKFSPLGRCVCNIDKASK 223
+ W L ++E+ + LKV V W+ P G N D ++K
Sbjct: 189 SSWERLFNLVEQCQQHLKVTMVNWERPPEGIHKLNTDGSAK 229