BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atropa21_contig00043128
         (505 letters)

Database: nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004306074.1| PREDICTED: putative ribonuclease H protein A...    59   9e-07
gb|ABD28505.2| RNA-directed DNA polymerase (Reverse transcriptas...    57   3e-06

>ref|XP_004306074.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
           vesca subsp. vesca]
          Length = 407

 Score = 58.5 bits (140), Expect = 9e-07
 Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 1/127 (0%)
 Frame = +2

Query: 8   KLWSTRWIPNSDTFRDSIAGPLHYLDYKLTIRNLCNSNNFDLSKLSFVLPKEILNKINSK 187
           K W   W P       + A P  ++++  T+ +    + +D+ KL  V+P EI+NKI + 
Sbjct: 198 KFWHDYWFPAGPLI--NFALPSAFINHAATVCDFWIEDGWDVHKLLDVVPFEIVNKIVNV 255

Query: 188 PLPL*DAGPDIPLWSPHNKMTNFSIASCYD-LIEISPTLTYNITWIWNLCCPTKIKVIIW 364
           P+    +G D  +W        F + S Y+ L ++S  L     +IW +  P K+K  +W
Sbjct: 256 PIDFGVSGSDTLIWGA-TANGKFFVKSAYNSLFDMSAPLNPQWNYIWRMKIPPKLKTFLW 314

Query: 365 ICYHNKI 385
              H K+
Sbjct: 315 TFLHKKL 321


>gb|ABD28505.2| RNA-directed DNA polymerase (Reverse transcriptase);
           Polynucleotidyl transferase, Ribonuclease H fold
           [Medicago truncatula]
          Length = 729

 Score = 57.0 bits (136), Expect = 3e-06
 Identities = 43/150 (28%), Positives = 73/150 (48%), Gaps = 3/150 (2%)
 Frame = +2

Query: 5   TKLWSTRWIPNSDTFRDSIAGPLHYLDYKLTIRNLCNSNN-FDLSKLSFVLPKEILNKIN 181
           T  W  +WI N+ +   S      Y+D  +++R+  N++  +DL+ L   L  +I+N+I 
Sbjct: 363 TNFWLDKWISNNTSLFSS--STQSYVDTTISVRDAINTSGVWDLNFLMDNLHVDIVNQIL 420

Query: 182 SKPLPL*DAGPDIPLWSPHNKMTNFSIASCYDLIEISPTLTYNITW--IWNLCCPTKIKV 355
           + P P    GPD   W   N +  F++ S Y+L + +P       W  +WN   P +I+ 
Sbjct: 421 ALPTPSDFDGPDTIGWGGTNTL-KFTVQSAYNLQQENP-FAVGGDWKTLWNWKGPHRIQT 478

Query: 356 IIWICYHNKIFLVDLV*SIWVLILVYNTPC 445
            IW+  H +I L +   S W + +    PC
Sbjct: 479 FIWLAAHGRI-LTNYRRSKWGVGISPTCPC 507