BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atropa21_contig00042649
         (635 letters)

Database: nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABA95357.2| retrotransposon protein, putative, unclassified [...   128   2e-33
ref|NP_001175365.1| Os08g0123950 [Oryza sativa Japonica Group] g...   134   6e-32
gb|AAP54937.2| retrotransposon protein, putative, unclassified [...   124   2e-31
emb|CAJ86299.1| H0124B04.16 [Oryza sativa Indica Group]               121   2e-31
emb|CAE05990.1| OSJNBa0004L19.22 [Oryza sativa Japonica Group]        129   9e-31
gb|AAK98732.1|AC090485_11 Putative retroelement [Oryza sativa Ja...   126   1e-30
gb|ABF93966.1| retrotransposon protein, putative, unclassified, ...   126   1e-30
emb|CAH66499.1| H0321H01.8 [Oryza sativa Indica Group]                124   2e-30
emb|CAD40278.2| OSJNBb0062H02.17 [Oryza sativa Japonica Group] g...   117   4e-30
gb|AAG13508.1|AC068924_13 putative gag-pol polyprotein [Oryza sa...   122   7e-30
gb|ADB85290.1| putative retrotransposon protein [Phyllostachys e...   117   7e-30
dbj|BAH00063.1| unnamed protein product [Oryza sativa Japonica G...   113   2e-29
gb|AAM01152.2|AC113336_4 Putative retroelement [Oryza sativa Jap...   119   6e-29
gb|AAP52367.1| retrotransposon protein, putative, unclassified [...   119   6e-29
gb|ADB85398.1| putative retrotransposon protein [Phyllostachys e...   114   8e-29
gb|AAU43957.1| putative polyprotein [Oryza sativa Japonica Group]     112   2e-28
gb|ABA97970.1| retrotransposon protein, putative, unclassified, ...   117   3e-28
gb|ABA97104.1| retrotransposon protein, putative, unclassified [...   117   3e-28
emb|CAE03590.1| OSJNBa0087O24.13 [Oryza sativa Japonica Group]        117   5e-28
gb|AAP53789.1| retrotransposon protein, putative, unclassified [...   121   1e-27

>gb|ABA95357.2| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 2811

 Score =  128 bits (322), Expect(2) = 2e-33
 Identities = 69/171 (40%), Positives = 109/171 (63%), Gaps = 2/171 (1%)
 Frame = +3

Query: 18   HIQPKYFIIRTDDFSLKFLRDQRITTTLQHKGISKLMGLSYEIHYHKRVENVVADALSRR 197
            ++Q   F+IRTD  SL FL +QR++T  Q K ++KL+GL Y+I Y K +EN  ADALSRR
Sbjct: 2212 YLQHDEFVIRTDHRSLSFLTNQRLSTPWQQKALTKLLGLRYKICYKKGLENGAADALSRR 2271

Query: 198  -FESREECNGLTIIQPKWATEVMERYE-NNEAQHILSQLSIDAQALPNTTEQHGLIRING 371
              +  EE + ++I  P W  E+++ Y+ ++EAQ +L  LS+      N   Q+G++    
Sbjct: 2272 QSDGLEEVSAISICLPDWLQELIDGYQSDSEAQKLLQALSVSGAGPSNFEVQNGILYFKH 2331

Query: 372  KIYVGNNSQLRGKLIDQMHSSPWGGQSGILGTQQRLKALFYWLTLLTNVKE 524
            +I++G+N  L+ K++  +H++  GG SGIL T QR+K LF W  +  +V+E
Sbjct: 2332 RIWIGHNKLLQQKILANLHTAAVGGHSGILVTYQRVKQLFSWPGMRKDVQE 2382



 Score = 40.4 bits (93), Expect(2) = 2e-33
 Identities = 18/26 (69%), Positives = 19/26 (73%)
 Frame = +2

Query: 524  EKVTSCEICQRNKGEHVPYPGLLQSL 601
            E V  C+ICQR K EHV YPGLLQ L
Sbjct: 2382 EFVQHCDICQRAKSEHVKYPGLLQPL 2407


>ref|NP_001175365.1| Os08g0123950 [Oryza sativa Japonica Group]
           gi|255678117|dbj|BAH94093.1| Os08g0123950, partial
           [Oryza sativa Japonica Group]
          Length = 783

 Score =  134 bits (337), Expect(2) = 6e-32
 Identities = 70/171 (40%), Positives = 109/171 (63%), Gaps = 2/171 (1%)
 Frame = +3

Query: 18  HIQPKYFIIRTDDFSLKFLRDQRITTTLQHKGISKLMGLSYEIHYHKRVENVVADALSRR 197
           ++Q   FII TD  SL  L DQR+ T  QHK  +KL+GL Y+I Y K   N  ADALSR+
Sbjct: 159 YLQHVEFIILTDHHSLMHLSDQRLHTPWQHKAFTKLLGLQYKICYRKGSTNAAADALSRK 218

Query: 198 -FESREECNGLTIIQPKWATEVMERYENN-EAQHILSQLSIDAQALPNTTEQHGLIRING 371
             +S EE N ++   P+W  EV++ Y+ +  A  +++ L+++  + P+ + QHG++R  G
Sbjct: 219 PQQSEEEFNAISQCVPQWLMEVLQSYDTDPHATQLVAALTLNPNSKPHFSLQHGVLRYKG 278

Query: 372 KIYVGNNSQLRGKLIDQMHSSPWGGQSGILGTQQRLKALFYWLTLLTNVKE 524
            I++GN+  L+ K+I++MH+SP GG SG   T +R+K LF W  + + +KE
Sbjct: 279 NIWIGNSPDLQLKIINEMHASPVGGHSGFPVTYRRIKQLFAWNGMKSQIKE 329



 Score = 29.6 bits (65), Expect(2) = 6e-32
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 524 EKVTSCEICQRNKGEHVPYPGLLQSLPFLPG 616
           E + +C+IC + K +   YP LLQ LP   G
Sbjct: 329 ETLANCQICAQAKPDRSRYPRLLQPLPVPKG 359


>gb|AAP54937.2| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1477

 Score =  124 bits (311), Expect(2) = 2e-31
 Identities = 68/172 (39%), Positives = 105/172 (61%), Gaps = 2/172 (1%)
 Frame = +3

Query: 18   HIQPKYFIIRTDDFSLKFLRDQRITTTLQHKGISKLMGLSYEIHYHKRVENVVADALSRR 197
            ++Q + F+I TD  SL  L DQR+ T  Q K  +KL+GL Y I Y K   N  ADALSR+
Sbjct: 947  YLQHQEFMILTDHHSLTHLSDQRLHTPWQQKAFTKLLGLQYRIVYRKGSANSAADALSRK 1006

Query: 198  -FESREECNGLTIIQPKWATEVMERYENNE-AQHILSQLSIDAQALPNTTEQHGLIRING 371
                  +   ++   P W  EV++ YE ++ +  +L++LS++ +A  + T Q GLIR  G
Sbjct: 1007 DLGDSAQILAVSSCSPSWLQEVIQGYEQDKFSSQLLAELSLNPKAREHYTLQQGLIRYKG 1066

Query: 372  KIYVGNNSQLRGKLIDQMHSSPWGGQSGILGTQQRLKALFYWLTLLTNVKER 527
            +I+VGNN+ L+ KLI ++H +P GG SG   T +R+K LF WL +   ++++
Sbjct: 1067 RIWVGNNTDLQLKLIKELHDNPAGGHSGFPVTYRRIKHLFAWLGMKQQIQQQ 1118



 Score = 37.7 bits (86), Expect(2) = 2e-31
 Identities = 16/31 (51%), Positives = 21/31 (67%)
 Frame = +2

Query: 524  EKVTSCEICQRNKGEHVPYPGLLQSLPFLPG 616
            +++  C+ICQ+ K E V YPGLLQ LP   G
Sbjct: 1117 QQLKQCQICQQAKPERVKYPGLLQPLPVPKG 1147


>emb|CAJ86299.1| H0124B04.16 [Oryza sativa Indica Group]
          Length = 1265

 Score =  121 bits (304), Expect(2) = 2e-31
 Identities = 68/171 (39%), Positives = 106/171 (61%), Gaps = 2/171 (1%)
 Frame = +3

Query: 18   HIQPKYFIIRTDDFSLKFLRDQRITTTLQHKGISKLMGLSYEIHYHKRVENVVADALSRR 197
            ++Q   F+IRTD  SL FL +QR++T  Q K ++KL+GL Y+I Y K +EN  ADALSRR
Sbjct: 998  YLQHDEFVIRTDHRSLSFLINQRLSTPWQQKALTKLLGLRYKICYKKGLENGAADALSRR 1057

Query: 198  -FESREECNGLTIIQPKWATEVMERYE-NNEAQHILSQLSIDAQALPNTTEQHGLIRING 371
              +  EE + ++I    W  E++  Y+ ++EAQ +L  LS+      N    +G++    
Sbjct: 1058 QSDGLEELSAISICLSDWLQELIAGYQSDSEAQKLLQALSVSGAGPSNFEVLNGILYFKH 1117

Query: 372  KIYVGNNSQLRGKLIDQMHSSPWGGQSGILGTQQRLKALFYWLTLLTNVKE 524
            +I++G+N  L+ K++  +H++  GG SGIL T QR+K LF W  L  +V+E
Sbjct: 1118 RIWIGHNKLLQQKILANLHTTAVGGHSGILVTYQRVKQLFSWPGLRKDVQE 1168



 Score = 40.4 bits (93), Expect(2) = 2e-31
 Identities = 18/26 (69%), Positives = 19/26 (73%)
 Frame = +2

Query: 524  EKVTSCEICQRNKGEHVPYPGLLQSL 601
            E V  C+ICQR K EHV YPGLLQ L
Sbjct: 1168 EFVQHCDICQRAKSEHVKYPGLLQPL 1193


>emb|CAE05990.1| OSJNBa0004L19.22 [Oryza sativa Japonica Group]
          Length = 1586

 Score =  129 bits (325), Expect(2) = 9e-31
 Identities = 69/166 (41%), Positives = 101/166 (60%), Gaps = 2/166 (1%)
 Frame = +3

Query: 6    KK*RH-IQPKYFIIRTDDFSLKFLRDQRITTTLQHKGISKLMGLSYEIHYHKRVENVVAD 182
            KK RH +     II+TD  SLKF+ +QR+   +QHK + KLM   Y I Y    EN+VAD
Sbjct: 1033 KKWRHYVLGSRLIIKTDQQSLKFMMNQRLVEGIQHKLLLKLMEYDYSIEYKAGKENLVAD 1092

Query: 183  ALSRRFESREECNGLTIIQPKWATEVMERYENN-EAQHILSQLSIDAQALPNTTEQHGLI 359
            ALSR     E+C  +T + P+W  ++   YE + +A  ILS +  +     + +++ GL+
Sbjct: 1093 ALSR-IPPAEQCQAITTVIPEWVRDIQRSYEGDVQAHKILSLIGTEGDTDGSYSQEAGLL 1151

Query: 360  RINGKIYVGNNSQLRGKLIDQMHSSPWGGQSGILGTQQRLKALFYW 497
            R  G+IYVG N+++R +LI   HSS +GG SG+  T  R+K+LFYW
Sbjct: 1152 RYKGRIYVGENTEIREELIRSYHSSAFGGHSGMRATYHRIKSLFYW 1197



 Score = 30.4 bits (67), Expect(2) = 9e-31
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 530  VTSCEICQRNKGEHVPYPGLLQSL 601
            +  C ICQ  K EH+  PGLL  L
Sbjct: 1208 IRECPICQVTKAEHIHIPGLLDPL 1231


>gb|AAK98732.1|AC090485_11 Putative retroelement [Oryza sativa Japonica Group]
          Length = 1923

 Score =  126 bits (316), Expect(2) = 1e-30
 Identities = 67/162 (41%), Positives = 102/162 (62%), Gaps = 2/162 (1%)
 Frame = +3

Query: 18  HIQPKYFIIRTDDFSLKFLRDQRITTTLQHKGISKLMGLSYEIHYHKRVENVVADALSRR 197
           ++Q   F+I TD  +L  + DQR+ T LQHK  +KLMGL Y++ Y +   N  ADALSRR
Sbjct: 427 YLQHDEFVILTDHHNLMHITDQRLHTPLQHKAFTKLMGLQYKVCYRRGTSNAAADALSRR 486

Query: 198 -FESREECNGLTIIQPKWATEVMERYENNE-AQHILSQLSIDAQALPNTTEQHGLIRING 371
             E+ ++   ++  QP W T V++ YE +E AQ +L++L++   A  +     G++R  G
Sbjct: 487 DEETNDQLWAVSECQPLWLTAVVKGYETDEQAQQLLTELALHPTAREHFHLVQGVLRYKG 546

Query: 372 KIYVGNNSQLRGKLIDQMHSSPWGGQSGILGTQQRLKALFYW 497
           KI++G+N  L+ +L+  +H+SP GG SG   T QR+KALF W
Sbjct: 547 KIWIGHNLSLQQQLVTALHASPIGGHSGFPVTYQRVKALFAW 588



 Score = 33.5 bits (75), Expect(2) = 1e-30
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = +2

Query: 530 VTSCEICQRNKGEHVPYPGLLQSLPFLPG 616
           V +C ICQ+ K +   YPGLLQ LP   G
Sbjct: 599 VKNCTICQQAKPDLAKYPGLLQPLPIPEG 627


>gb|ABF93966.1| retrotransposon protein, putative, unclassified, expressed [Oryza
           sativa Japonica Group]
          Length = 1920

 Score =  126 bits (316), Expect(2) = 1e-30
 Identities = 67/162 (41%), Positives = 102/162 (62%), Gaps = 2/162 (1%)
 Frame = +3

Query: 18  HIQPKYFIIRTDDFSLKFLRDQRITTTLQHKGISKLMGLSYEIHYHKRVENVVADALSRR 197
           ++Q   F+I TD  +L  + DQR+ T LQHK  +KLMGL Y++ Y +   N  ADALSRR
Sbjct: 427 YLQHDEFVILTDHHNLMHITDQRLHTPLQHKAFTKLMGLQYKVCYRRGTSNAAADALSRR 486

Query: 198 -FESREECNGLTIIQPKWATEVMERYENNE-AQHILSQLSIDAQALPNTTEQHGLIRING 371
             E+ ++   ++  QP W T V++ YE +E AQ +L++L++   A  +     G++R  G
Sbjct: 487 DEETNDQLWAVSECQPLWLTAVVKGYETDEQAQQLLTELALHPTAREHFHLVQGVLRYKG 546

Query: 372 KIYVGNNSQLRGKLIDQMHSSPWGGQSGILGTQQRLKALFYW 497
           KI++G+N  L+ +L+  +H+SP GG SG   T QR+KALF W
Sbjct: 547 KIWIGHNLSLQQQLVTALHASPIGGHSGFPVTYQRVKALFAW 588



 Score = 33.5 bits (75), Expect(2) = 1e-30
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = +2

Query: 530 VTSCEICQRNKGEHVPYPGLLQSLPFLPG 616
           V +C ICQ+ K +   YPGLLQ LP   G
Sbjct: 599 VKNCTICQQAKPDLAKYPGLLQPLPIPEG 627


>emb|CAH66499.1| H0321H01.8 [Oryza sativa Indica Group]
          Length = 1602

 Score =  124 bits (312), Expect(2) = 2e-30
 Identities = 71/171 (41%), Positives = 103/171 (60%), Gaps = 2/171 (1%)
 Frame = +3

Query: 18   HIQPKYFIIRTDDFSLKFLRDQRITTTLQHKGISKLMGLSYEIHYHKRVENVVADALSRR 197
            ++Q   FII TD  SL  L DQR+ T  QHK  +KL+GL Y+I Y K   N  ADALSR+
Sbjct: 974  YLQHGEFIILTDHHSLMHLSDQRLHTPWQHKAFTKLLGLQYKICYRKGSSNAAADALSRK 1033

Query: 198  F-ESREECNGLTIIQPKWATEVMERYENN-EAQHILSQLSIDAQALPNTTEQHGLIRING 371
            F +S  E   ++   P+W  EV + YE + +A  +LS L+I  +   +    +G+IR   
Sbjct: 1034 FQDSNSEIFAISSSVPQWLMEVTQGYEKDAQAAKLLSTLAIHPEKHIHYFLDNGIIRYKN 1093

Query: 372  KIYVGNNSQLRGKLIDQMHSSPWGGQSGILGTQQRLKALFYWLTLLTNVKE 524
            +I+VGNN +L+ KLI ++H+SP GG SG   T +++K LF W  +   +KE
Sbjct: 1094 RIWVGNNPELQLKLIRELHASPVGGHSGFPVTYRKIKQLFAWPNMKKMIKE 1144



 Score = 33.9 bits (76), Expect(2) = 2e-30
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +2

Query: 524  EKVTSCEICQRNKGEHVPYPGLLQSLPFLPG 616
            E V  C++C + K + + YPGLLQ LP   G
Sbjct: 1144 ESVQRCQVCLQAKPDRLKYPGLLQPLPVPEG 1174


>emb|CAD40278.2| OSJNBb0062H02.17 [Oryza sativa Japonica Group]
            gi|38347666|emb|CAE05600.2| OSJNBa0054D14.1 [Oryza sativa
            Japonica Group]
          Length = 1629

 Score =  117 bits (292), Expect(2) = 4e-30
 Identities = 63/169 (37%), Positives = 106/169 (62%), Gaps = 2/169 (1%)
 Frame = +3

Query: 18   HIQPKYFIIRTDDFSLKFLRDQRITTTLQHKGISKLMGLSYEIHYHKRVENVVADALSRR 197
            ++Q   F IRTD  SL FL +QR+TT  QHK ++KL+GL Y+I + K ++N  ADALSR 
Sbjct: 1031 YLQHDEFFIRTDHRSLAFLTEQRLTTPWQHKALTKLLGLRYKIIFKKGIDNSAADALSRY 1090

Query: 198  FES-REECNGLTIIQPKWATEVMERYENN-EAQHILSQLSIDAQALPNTTEQHGLIRING 371
              S R E + L++  P+W  +++  Y ++ +A   +  L I++ A+PN + ++G++    
Sbjct: 1091 PGSDRVELSALSVAVPEWINDIVAGYSSDPDACSKVQTLCINSGAVPNFSLRNGVLYFQN 1150

Query: 372  KIYVGNNSQLRGKLIDQMHSSPWGGQSGILGTQQRLKALFYWLTLLTNV 518
            +++VG+N  ++ +++  +H++  GG SGI  T QR+K LF W  L   V
Sbjct: 1151 RLWVGHNVDVQQRILANLHTAAVGGHSGIQVTYQRVKQLFAWPRLRATV 1199



 Score = 40.8 bits (94), Expect(2) = 4e-30
 Identities = 17/30 (56%), Positives = 22/30 (73%)
 Frame = +2

Query: 530  VTSCEICQRNKGEHVPYPGLLQSLPFLPGH 619
            V +C +CQ+ K EHV YPG+LQ LP +P H
Sbjct: 1203 VQACSVCQQAKSEHVKYPGMLQPLP-VPDH 1231


>gb|AAG13508.1|AC068924_13 putative gag-pol polyprotein [Oryza sativa Japonica Group]
          Length = 1608

 Score =  122 bits (307), Expect(2) = 7e-30
 Identities = 64/171 (37%), Positives = 105/171 (61%), Gaps = 1/171 (0%)
 Frame = +3

Query: 18   HIQPKYFIIRTDDFSLKFLRDQRITTTLQHKGISKLMGLSYEIHYHKRVENVVADALSRR 197
            ++Q   FII TD  SL  L +QR+ T  Q K  +KL+GL Y+I Y K V N  ADALSRR
Sbjct: 991  YLQQGEFIILTDHHSLMHLTEQRLHTPWQQKAFTKLLGLQYKICYRKGVSNAAADALSRR 1050

Query: 198  FESREECNGLTIIQPKWATEVMERYE-NNEAQHILSQLSIDAQALPNTTEQHGLIRINGK 374
                 E   ++   P W  E+M+ Y+ + +++ +L++L+I   +  +     G+++  GK
Sbjct: 1051 ESPISEVAAISECIPSWMQELMQGYQLDGQSKQLLAELAISPNSRKDYQLCQGILKYKGK 1110

Query: 375  IYVGNNSQLRGKLIDQMHSSPWGGQSGILGTQQRLKALFYWLTLLTNVKER 527
            I+VGNN+ L+ KL++++H++P GG SG   T +++K+LF W  +   +KE+
Sbjct: 1111 IWVGNNTALQHKLVNELHATPLGGHSGFPVTYRKVKSLFAWPGMKKLIKEQ 1161



 Score = 34.3 bits (77), Expect(2) = 7e-30
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +2

Query: 524  EKVTSCEICQRNKGEHVPYPGLLQSLPFLPG 616
            E++ SC++C + K +   YPGLLQ LP   G
Sbjct: 1160 EQLQSCQVCLQAKPDRARYPGLLQPLPVPAG 1190


>gb|ADB85290.1| putative retrotransposon protein [Phyllostachys edulis]
          Length = 592

 Score =  117 bits (294), Expect(2) = 7e-30
 Identities = 61/163 (37%), Positives = 101/163 (61%), Gaps = 1/163 (0%)
 Frame = +3

Query: 39  IIRTDDFSLKFLRDQRITTTLQHKGISKLMGLSYEIHYHKRVENVVADALSRRFESREEC 218
           IIRTD  SLK++++Q I   +QHK + KL+G +Y++ Y +  EN   DALSR     ++ 
Sbjct: 180 IIRTDQQSLKYMQEQIIIEGVQHKLLVKLLGYNYKVEYKRGRENKATDALSR-VRYNDQV 238

Query: 219 NGLTIIQPKWATEVMERYENNE-AQHILSQLSIDAQALPNTTEQHGLIRINGKIYVGNNS 395
             ++ + P W  EV+  YE +E  + +++Q+SI   A PN + ++G++R  G++Y+G+N+
Sbjct: 239 VAISAVTPVWILEVLASYEGDEKCRDLITQISISPTAQPNYSLKNGILRYKGRLYIGSNT 298

Query: 396 QLRGKLIDQMHSSPWGGQSGILGTQQRLKALFYWLTLLTNVKE 524
            L+ +L+   H S  GG SG   T QRLK +F+W  +   V+E
Sbjct: 299 GLKRQLLVTFHDSALGGHSGGRVTYQRLKLIFHWPRMKQEVEE 341



 Score = 39.3 bits (90), Expect(2) = 7e-30
 Identities = 16/27 (59%), Positives = 20/27 (74%)
 Frame = +2

Query: 524 EKVTSCEICQRNKGEHVPYPGLLQSLP 604
           E V   ++CQ+N  EHVPYPGLLQ +P
Sbjct: 341 EFVKLYDVCQKNNCEHVPYPGLLQPIP 367


>dbj|BAH00063.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 494

 Score =  113 bits (283), Expect(2) = 2e-29
 Identities = 65/169 (38%), Positives = 100/169 (59%), Gaps = 2/169 (1%)
 Frame = +3

Query: 18  HIQPKYFIIRTDDFSLKFLRDQRITTTLQHKGISKLMGLSYEIHYHKRVENVVADALSRR 197
           ++Q   F IRTD  SL FL DQR++T  Q K ++KL+GL Y I Y K  EN  ADALS  
Sbjct: 64  YLQHAEFCIRTDHRSLSFLSDQRLSTPWQQKAVTKLLGLCYRIVYKKGTENGTADALSHV 123

Query: 198 FESR-EECNGLTIIQPKWATEVMERYE-NNEAQHILSQLSIDAQALPNTTEQHGLIRING 371
            +S     + L++  P+W  E+++ Y+   +A   +  L I+  ALP  T ++G++    
Sbjct: 124 SDSSLVTLSALSVCIPEWMQEIIDGYQLVPDACSNVQALCINNAALPQFTLKNGILYFQD 183

Query: 372 KIYVGNNSQLRGKLIDQMHSSPWGGQSGILGTQQRLKALFYWLTLLTNV 518
           +I++G NS ++ K++  +H++  GG SGI  T QR+K LF W  L  +V
Sbjct: 184 RIWIGQNSSVQQKILANLHTAAIGGHSGIQVTYQRIKQLFAWPGLRADV 232



 Score = 42.4 bits (98), Expect(2) = 2e-29
 Identities = 18/25 (72%), Positives = 19/25 (76%)
 Frame = +2

Query: 530 VTSCEICQRNKGEHVPYPGLLQSLP 604
           V SC+ICQR K EHV YPG LQ LP
Sbjct: 236 VQSCDICQRAKSEHVRYPGFLQPLP 260


>gb|AAM01152.2|AC113336_4 Putative retroelement [Oryza sativa Japonica Group]
          Length = 575

 Score =  119 bits (297), Expect(2) = 6e-29
 Identities = 66/169 (39%), Positives = 101/169 (59%), Gaps = 1/169 (0%)
 Frame = +3

Query: 18  HIQPKYFIIRTDDFSLKFLRDQRITTTLQHKGISKLMGLSYEIHYHKRVENVVADALSRR 197
           ++Q   F I TD  +L  L +Q++ T++Q K   KLMGL Y+I Y K +EN  ADALSR+
Sbjct: 121 YLQHSVFTIVTDHRNLTHLTEQKLVTSMQQKAFLKLMGLQYKIKYKKGLENTAADALSRQ 180

Query: 198 FESREECNGLTIIQPKWATEVMERYENNEA-QHILSQLSIDAQALPNTTEQHGLIRINGK 374
            E  E+ + ++I  P+W   + E YE +EA + +L+QLS+ +    +     G+IR NGK
Sbjct: 181 VE--EDQHSMSISVPRWMEIIQEGYEKDEATKQLLTQLSVHSDKQGDFQLMQGIIRHNGK 238

Query: 375 IYVGNNSQLRGKLIDQMHSSPWGGQSGILGTQQRLKALFYWLTLLTNVK 521
           I++G + + +  ++  +HSS  GG SGI  T  R+K LF W  L   V+
Sbjct: 239 IWLGQHEEAKQAVLLALHSSGVGGHSGITATYNRVKTLFSWSRLKNYVQ 287



 Score = 35.0 bits (79), Expect(2) = 6e-29
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = +2

Query: 530 VTSCEICQRNKGEHVPYPGLLQSLP 604
           V  CE+CQ+ K EH    GLLQ+LP
Sbjct: 290 VQGCEVCQKAKSEHCKLSGLLQTLP 314


>gb|AAP52367.1| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group]
          Length = 415

 Score =  119 bits (297), Expect(2) = 6e-29
 Identities = 66/169 (39%), Positives = 101/169 (59%), Gaps = 1/169 (0%)
 Frame = +3

Query: 18  HIQPKYFIIRTDDFSLKFLRDQRITTTLQHKGISKLMGLSYEIHYHKRVENVVADALSRR 197
           ++Q   F I TD  +L  L +Q++ T++Q K   KLMGL Y+I Y K +EN  ADALSR+
Sbjct: 21  YLQHSVFTIVTDHRNLTHLTEQKLVTSMQQKAFLKLMGLQYKIKYKKGLENTAADALSRQ 80

Query: 198 FESREECNGLTIIQPKWATEVMERYENNEA-QHILSQLSIDAQALPNTTEQHGLIRINGK 374
            E  E+ + ++I  P+W   + E YE +EA + +L+QLS+ +    +     G+IR NGK
Sbjct: 81  VE--EDQHSMSISVPRWMEIIQEGYEKDEATKQLLTQLSVHSDKQGDFQLMQGIIRHNGK 138

Query: 375 IYVGNNSQLRGKLIDQMHSSPWGGQSGILGTQQRLKALFYWLTLLTNVK 521
           I++G + + +  ++  +HSS  GG SGI  T  R+K LF W  L   V+
Sbjct: 139 IWLGQHEEAKQAVLLALHSSGVGGHSGITATYNRVKTLFSWSRLKNYVQ 187



 Score = 35.0 bits (79), Expect(2) = 6e-29
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = +2

Query: 530 VTSCEICQRNKGEHVPYPGLLQSLP 604
           V  CE+CQ+ K EH    GLLQ+LP
Sbjct: 190 VQGCEVCQKAKSEHCKLSGLLQTLP 214


>gb|ADB85398.1| putative retrotransposon protein [Phyllostachys edulis]
          Length = 1348

 Score =  114 bits (286), Expect(2) = 8e-29
 Identities = 64/154 (41%), Positives = 89/154 (57%), Gaps = 1/154 (0%)
 Frame = +3

Query: 39   IIRTDDFSLKFLRDQRITTTLQHKGISKLMGLSYEIHYHKRVENVVADALSRRFESREEC 218
            IIRTD  SLKF+ DQ++   +QHK + +L+   Y I Y K  EN VADALSRR  S    
Sbjct: 797  IIRTDQQSLKFMTDQKVAEGIQHKLMLRLLEFDYTIEYKKGKENKVADALSRRGNS---V 853

Query: 219  NGLTIIQPKWATEVMERYENN-EAQHILSQLSIDAQALPNTTEQHGLIRINGKIYVGNNS 395
              ++I  P W   V   Y+N+   + ++ QL++   A    T   G++R  G+IYVG + 
Sbjct: 854  MAISIAVPSWIEAVTNSYQNDANCKELMEQLTLAPNADSGYTLNAGVLRYKGRIYVGKDP 913

Query: 396  QLRGKLIDQMHSSPWGGQSGILGTQQRLKALFYW 497
            +LR  +I  +H S  GG SG + T QR+K LFYW
Sbjct: 914  ELRLNIIHSLHMSAVGGHSGRVATYQRVKHLFYW 947



 Score = 38.9 bits (89), Expect(2) = 8e-29
 Identities = 15/25 (60%), Positives = 18/25 (72%)
 Frame = +2

Query: 530  VTSCEICQRNKGEHVPYPGLLQSLP 604
            V  C +CQR+K EH  YPGLL+ LP
Sbjct: 958  VRECAVCQRSKAEHCHYPGLLEPLP 982


>gb|AAU43957.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1263

 Score =  112 bits (281), Expect(2) = 2e-28
 Identities = 64/171 (37%), Positives = 102/171 (59%), Gaps = 2/171 (1%)
 Frame = +3

Query: 18   HIQPKYFIIRTDDFSLKFLRDQRITTTLQHKGISKLMGLSYEIHYHKRVENVVADALSRR 197
            ++Q + F+IRTD  SL FL +QR+TT+ QHK ++KL+GL Y I Y K +EN  ADALSRR
Sbjct: 940  YLQHEEFLIRTDHRSLAFLDNQRLTTSWQHKAMTKLLGLRYRIVYKKGLENGAADALSRR 999

Query: 198  -FESREECNGLTIIQPKWATEVMERYENN-EAQHILSQLSIDAQALPNTTEQHGLIRING 371
              +     + L++  P W  +V+  Y+++ EA  +L           +   Q+G++    
Sbjct: 1000 SSDGLPILSALSVGLPDWLQDVVSGYKSDPEALQLLHSFKEGTPHSAHFELQNGILYFKK 1059

Query: 372  KIYVGNNSQLRGKLIDQMHSSPWGGQSGILGTQQRLKALFYWLTLLTNVKE 524
            +++VGNN Q + +++  +H++  GG SGI  T QR+K LF W  L   V++
Sbjct: 1060 RVWVGNNRQFQQQVLANLHTAALGGHSGIQVTYQRVKQLFAWPGLRQTVQD 1110



 Score = 39.7 bits (91), Expect(2) = 2e-28
 Identities = 18/30 (60%), Positives = 22/30 (73%)
 Frame = +2

Query: 530  VTSCEICQRNKGEHVPYPGLLQSLPFLPGH 619
            V SC +CQ+ K EHVPYPGLLQ +  +P H
Sbjct: 1112 VHSCVVCQQAKPEHVPYPGLLQPVQ-IPEH 1140


>gb|ABA97970.1| retrotransposon protein, putative, unclassified, expressed [Oryza
            sativa Japonica Group]
          Length = 1548

 Score =  117 bits (292), Expect(2) = 3e-28
 Identities = 69/166 (41%), Positives = 99/166 (59%), Gaps = 3/166 (1%)
 Frame = +3

Query: 36   FIIRTDDFSLKFLRDQRITTTLQHKGISKLMGLSYEIHYHKRVENVVADALSR--RFESR 209
            F+IRTD  SL  L DQ + + LQ K ++KL+GL Y+  Y +  EN  ADALSR   F S 
Sbjct: 980  FVIRTDHQSLCHLDDQLLGSELQRKAMTKLIGLQYKFQYKRGAENKSADALSRVGHFFSL 1039

Query: 210  EECNGLTIIQPKWATEVMERYE-NNEAQHILSQLSIDAQALPNTTEQHGLIRINGKIYVG 386
            +    ++I QP W  EV+  Y  +N+AQ +L++L+I +      +  HGLI+  G+I++G
Sbjct: 1040 Q---AISIAQPVWVQEVVNSYVVDNQAQSLLTELAIMSPNASGFSLVHGLIKKKGRIWLG 1096

Query: 387  NNSQLRGKLIDQMHSSPWGGQSGILGTQQRLKALFYWLTLLTNVKE 524
             NS L  K+I   H S  GG SG++ T  R+K LF W  L  +V+E
Sbjct: 1097 ANSALHTKIISSFHDSAIGGHSGVMATYHRVKKLFVWKGLKHSVEE 1142



 Score = 34.7 bits (78), Expect(2) = 3e-28
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +2

Query: 524  EKVTSCEICQRNKGEHVPYPGLLQSLPFLPG 616
            E +  C +CQ+ K EH   PGLLQ LP   G
Sbjct: 1142 EFIQQCVVCQKAKHEHCSSPGLLQPLPIPTG 1172


>gb|ABA97104.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1412

 Score =  117 bits (293), Expect(2) = 3e-28
 Identities = 59/162 (36%), Positives = 101/162 (62%), Gaps = 2/162 (1%)
 Frame = +3

Query: 18   HIQPKYFIIRTDDFSLKFLRDQRITTTLQHKGISKLMGLSYEIHYHKRVENVVADALSRR 197
            ++Q + F+I TD  SL  L +QR+ T  QHK  +KL+GL ++I Y K   N  A+ALSR+
Sbjct: 883  YLQQQEFVILTDHHSLMHLNEQRLHTPWQHKAFTKLLGLQFKICYRKGSSNAAANALSRK 942

Query: 198  F-ESREECNGLTIIQPKWATEVMERY-ENNEAQHILSQLSIDAQALPNTTEQHGLIRING 371
            + E   E + ++   P W  EV + Y ++  +  +L+ L+++A++ PN +  +G++R  G
Sbjct: 943  YPEELSELHVVSSCSPVWLQEVSDGYLQDVFSAQLLTDLTLNAESRPNFSLCNGVLRFKG 1002

Query: 372  KIYVGNNSQLRGKLIDQMHSSPWGGQSGILGTQQRLKALFYW 497
            ++++ NN  ++ K+I  +HSSP GG SG   T  ++K+LF W
Sbjct: 1003 RVWIDNNPSVQDKIISALHSSPLGGHSGFPVTYSKIKSLFAW 1044



 Score = 34.3 bits (77), Expect(2) = 3e-28
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = +2

Query: 530  VTSCEICQRNKGEHVPYPGLLQSLPFLPG 616
            V +C IC + K +H  YPGLLQ LP   G
Sbjct: 1055 VKTCGICMQAKPDHSKYPGLLQPLPVPDG 1083


>emb|CAE03590.1| OSJNBa0087O24.13 [Oryza sativa Japonica Group]
          Length = 1311

 Score =  117 bits (292), Expect(2) = 5e-28
 Identities = 67/154 (43%), Positives = 86/154 (55%), Gaps = 1/154 (0%)
 Frame = +3

Query: 39   IIRTDDFSLKFLRDQRITTTLQHKGISKLMGLSYEIHYHKRVENVVADALSRRFESREEC 218
            IIRTD  SLK++ +QR+T  +QHK + KL+   Y+I Y K  EN  ADALSR   S  + 
Sbjct: 770  IIRTDQASLKYINEQRLTEGIQHKLLIKLLSYDYKIEYKKGKENKAADALSR-IPSVAQL 828

Query: 219  NGLTIIQPKWATEVMERYENN-EAQHILSQLSIDAQALPNTTEQHGLIRINGKIYVGNNS 395
               TII P W TE++  Y  + +   + SQL I  Q  P  T   G++R   ++YVG  +
Sbjct: 829  FSTTIIVPTWITEILASYATDPKCTALESQLRITPQGHPPYTLTSGILRYKNRLYVGAGT 888

Query: 396  QLRGKLIDQMHSSPWGGQSGILGTQQRLKALFYW 497
             LR KL    H S  GG SG   T QR K LFYW
Sbjct: 889  DLRAKLQQSFHDSALGGHSGERATYQRAKLLFYW 922



 Score = 33.9 bits (76), Expect(2) = 5e-28
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = +2

Query: 530  VTSCEICQRNKGEHVPYPGLLQSLP 604
            V  C +CQ+NK EH   PGLL  LP
Sbjct: 933  VKLCPVCQKNKSEHNLQPGLLHPLP 957


>gb|AAP53789.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1611

 Score =  121 bits (303), Expect(2) = 1e-27
 Identities = 71/175 (40%), Positives = 100/175 (57%), Gaps = 3/175 (1%)
 Frame = +3

Query: 6    KK*RH-IQPKYFIIRTDDFSLKFLRDQRITTTLQHKGISKLMGLSYEIHYHKRVENVVAD 182
            KK RH I     II+TD  SLKF+  QR+   +QHK + KLM   Y I Y    EN+VAD
Sbjct: 1056 KKWRHYILGGSLIIKTDQQSLKFMMSQRLVEGIQHKLLLKLMEFDYVIEYKSGKENLVAD 1115

Query: 183  ALSRRFESREE-CNGLTIIQPKWATEVMERYENNEAQH-ILSQLSIDAQALPNTTEQHGL 356
            ALSR    +EE C  +T++ P+W  ++   YE +   H ILS +  D     +   + GL
Sbjct: 1116 ALSRSPNLKEEQCLPITVVVPEWVQDIKRSYEEDIFAHKILSLIETDGDPERHYKLESGL 1175

Query: 357  IRINGKIYVGNNSQLRGKLIDQMHSSPWGGQSGILGTQQRLKALFYWLTLLTNVK 521
            ++  G+IYVG  +++R  L++  H+S +GG SGI  T  R+K LFYW  L   V+
Sbjct: 1176 LKYKGRIYVGETTEIRMLLLEAYHASYFGGHSGIRATYHRIKQLFYWPGLKKQVE 1230



 Score = 28.5 bits (62), Expect(2) = 1e-27
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +2

Query: 530  VTSCEICQRNKGEHVPYPGLLQSL 601
            +  C  CQ  K EH+  PGLL  L
Sbjct: 1233 IRECPTCQITKAEHIHIPGLLNPL 1256