BLASTX nr result
ID: Atropa21_contig00042635
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Atropa21_contig00042635
(536 letters)
Database: nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006356960.1| PREDICTED: putative ribonuclease H protein A... 51 3e-10
ref|XP_006355601.1| PREDICTED: putative ribonuclease H protein A... 59 3e-10
ref|XP_006352964.1| PREDICTED: putative ribonuclease H protein A... 59 3e-10
ref|XP_006337991.1| PREDICTED: putative ribonuclease H protein A... 58 1e-09
ref|XP_006347119.1| PREDICTED: putative ribonuclease H protein A... 58 1e-09
ref|XP_006352585.1| PREDICTED: uncharacterized protein LOC102588... 49 3e-09
ref|XP_006356729.1| PREDICTED: putative ribonuclease H protein A... 55 4e-09
ref|XP_006350483.1| PREDICTED: putative ribonuclease H protein A... 52 1e-06
emb|CAN67512.1| hypothetical protein VITISV_026954 [Vitis vinifera] 55 1e-06
emb|CAN68220.1| hypothetical protein VITISV_005372 [Vitis vinifera] 54 2e-06
ref|XP_006362709.1| PREDICTED: putative ribonuclease H protein A... 46 2e-06
ref|XP_006353602.1| PREDICTED: putative ribonuclease H protein A... 46 3e-06
ref|XP_006354966.1| PREDICTED: putative ribonuclease H protein A... 50 3e-06
ref|XP_006345710.1| PREDICTED: putative ribonuclease H protein A... 46 3e-06
ref|XP_006345709.1| PREDICTED: putative ribonuclease H protein A... 45 6e-06
>ref|XP_006356960.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
tuberosum]
Length = 514
Score = 51.2 bits (121), Expect(2) = 3e-10
Identities = 20/35 (57%), Positives = 25/35 (71%)
Frame = +2
Query: 137 LCSRCSLCERANELVNHLLLHCTFTRQIWTMFRAI 241
LCSRC LC + E HL LHC+FTRQ+W +F A+
Sbjct: 422 LCSRCFLCHQEAETNGHLFLHCSFTRQLWQLFAAL 456
Score = 38.9 bits (89), Expect(2) = 3e-10
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = +1
Query: 1 VKVCHRNLLGNMRSIQKDWP*RTIWKTIAHPRATCFTWITTQQACFVQQML 153
VK+ + N L ++ WP + IWK A + CFTW+ +AC L
Sbjct: 366 VKIAY-NYLMDLEQFNDPWPWKEIWKARAPFKVVCFTWLVVWKACLTHDKL 415
>ref|XP_006355601.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
tuberosum]
Length = 399
Score = 59.3 bits (142), Expect(2) = 3e-10
Identities = 23/45 (51%), Positives = 31/45 (68%)
Frame = +2
Query: 131 LVLCSRCSLCERANELVNHLLLHCTFTRQIWTMFRAIFGVELVMP 265
+ LCSRC LC +E VNHL LHC FT+Q+W +F ++ G+ MP
Sbjct: 272 ITLCSRCFLCGETSETVNHLFLHCKFTQQLWRVFLSLKGISWAMP 316
Score = 30.8 bits (68), Expect(2) = 3e-10
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 55 WP*RTIWKTIAHPRATCFTWITTQQACFVQ 144
WP R IWK + +CF W+ ++A Q
Sbjct: 235 WPWRQIWKGRIPYKVSCFIWLLAKEAALTQ 264
>ref|XP_006352964.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
tuberosum]
Length = 323
Score = 59.3 bits (142), Expect(2) = 3e-10
Identities = 23/45 (51%), Positives = 31/45 (68%)
Frame = +2
Query: 131 LVLCSRCSLCERANELVNHLLLHCTFTRQIWTMFRAIFGVELVMP 265
+ LCSRC LC +E VNHL LHC FT+Q+W +F ++ G+ MP
Sbjct: 196 ITLCSRCFLCGETSETVNHLFLHCKFTQQLWRVFLSLKGISWAMP 240
Score = 30.8 bits (68), Expect(2) = 3e-10
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 55 WP*RTIWKTIAHPRATCFTWITTQQACFVQ 144
WP R IWK + +CF W+ ++A Q
Sbjct: 159 WPWRQIWKGRIPYKVSCFIWLLAKEAALTQ 188
>ref|XP_006337991.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
tuberosum]
Length = 556
Score = 58.2 bits (139), Expect(2) = 1e-09
Identities = 23/45 (51%), Positives = 30/45 (66%)
Frame = +2
Query: 131 LVLCSRCSLCERANELVNHLLLHCTFTRQIWTMFRAIFGVELVMP 265
+ LCSRC LC E VNHL LHC +TRQ+W +F ++ G+ MP
Sbjct: 429 ITLCSRCFLCGETLETVNHLFLHCKYTRQLWRIFLSLKGISWTMP 473
Score = 30.0 bits (66), Expect(2) = 1e-09
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = +1
Query: 55 WP*RTIWKTIAHPRATCFTWITTQQACFVQ 144
WP + +WK + +CF W+ ++A Q
Sbjct: 392 WPWKQVWKCRIPHKVSCFIWLLAKEAALTQ 421
>ref|XP_006347119.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
tuberosum]
Length = 450
Score = 58.2 bits (139), Expect(2) = 1e-09
Identities = 23/45 (51%), Positives = 30/45 (66%)
Frame = +2
Query: 131 LVLCSRCSLCERANELVNHLLLHCTFTRQIWTMFRAIFGVELVMP 265
+ LCSRC LC E VNHL LHC +TRQ+W +F ++ G+ MP
Sbjct: 323 ITLCSRCFLCGETLETVNHLFLHCKYTRQLWRIFLSLKGISWTMP 367
Score = 30.0 bits (66), Expect(2) = 1e-09
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = +1
Query: 55 WP*RTIWKTIAHPRATCFTWITTQQACFVQ 144
WP + +WK + +CF W+ ++A Q
Sbjct: 286 WPWKQVWKCRIPHKVSCFIWLLAKEAALTQ 315
>ref|XP_006352585.1| PREDICTED: uncharacterized protein LOC102588593 [Solanum tuberosum]
Length = 255
Score = 49.3 bits (116), Expect(2) = 3e-09
Identities = 20/43 (46%), Positives = 25/43 (58%)
Frame = +2
Query: 137 LCSRCSLCERANELVNHLLLHCTFTRQIWTMFRAIFGVELVMP 265
+CSRC +C E+ +HL LHC +W MF I GV VMP
Sbjct: 129 ICSRCFMCGEEAEVNSHLFLHCRTAANLWNMFLCILGVNWVMP 171
Score = 37.7 bits (86), Expect(2) = 3e-09
Identities = 15/51 (29%), Positives = 31/51 (60%)
Frame = +1
Query: 1 VKVCHRNLLGNMRSIQKDWP*RTIWKTIAHPRATCFTWITTQQACFVQQML 153
VK C+ +L N ++++ +WP + IWK + + FTW+ ++AC +++
Sbjct: 73 VKSCYWSLNSN-QAMEMEWPWKLIWKIKIPHKVSGFTWLAIRKACLTHEVI 122
>ref|XP_006356729.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
tuberosum]
Length = 330
Score = 55.5 bits (132), Expect(2) = 4e-09
Identities = 21/40 (52%), Positives = 29/40 (72%)
Frame = +2
Query: 131 LVLCSRCSLCERANELVNHLLLHCTFTRQIWTMFRAIFGV 250
+ LCSRC LC +E VNHL LHC FT+Q+W +F ++ G+
Sbjct: 290 ITLCSRCFLCGETSETVNHLFLHCKFTQQLWRVFLSLKGI 329
Score = 30.8 bits (68), Expect(2) = 4e-09
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 55 WP*RTIWKTIAHPRATCFTWITTQQACFVQ 144
WP R IWK + +CF W+ ++A Q
Sbjct: 253 WPWRQIWKGRIPYKVSCFIWLLAKEAALTQ 282
>ref|XP_006350483.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
tuberosum]
Length = 258
Score = 51.6 bits (122), Expect(2) = 1e-06
Identities = 18/44 (40%), Positives = 26/44 (59%)
Frame = +2
Query: 137 LCSRCSLCERANELVNHLLLHCTFTRQIWTMFRAIFGVELVMPG 268
+C RC CE+ E +NHL LHC Q+W +F + G+ +PG
Sbjct: 209 MCPRCCFCEQVAETINHLFLHCKVVGQLWNLFTSFRGISWTVPG 252
Score = 26.6 bits (57), Expect(2) = 1e-06
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +1
Query: 7 VCHRNLLGNMRSIQKDW-P*RTIWKTIAHPRATCFTWITTQQACFVQQML 153
VC + N Q ++ P + IWK + FTW+ ++A Q+ L
Sbjct: 153 VCSAYRIMNQMGSQVNFLPWKLIWKVKIPYKVVVFTWLVVKEAVLTQENL 202
>emb|CAN67512.1| hypothetical protein VITISV_026954 [Vitis vinifera]
Length = 793
Score = 54.7 bits (130), Expect(2) = 1e-06
Identities = 20/51 (39%), Positives = 34/51 (66%)
Frame = +2
Query: 137 LCSRCSLCERANELVNHLLLHCTFTRQIWTMFRAIFGVELVMPGCIKLAVV 289
L +RC LC+R E ++H+LLHC R +W + ++FGV+ V+P +K ++
Sbjct: 690 LANRCYLCQRHEESIDHILLHCAKARTLWALLCSLFGVQWVLPATVKATLL 740
Score = 23.1 bits (48), Expect(2) = 1e-06
Identities = 9/28 (32%), Positives = 12/28 (42%)
Frame = +1
Query: 40 SIQKDWP*RTIWKTIAHPRATCFTWITT 123
S +P +IW PR + F W T
Sbjct: 646 SFPASFPSSSIWNVYVQPRVSFFGWEAT 673
>emb|CAN68220.1| hypothetical protein VITISV_005372 [Vitis vinifera]
Length = 577
Score = 53.5 bits (127), Expect(2) = 2e-06
Identities = 20/47 (42%), Positives = 32/47 (68%)
Frame = +2
Query: 137 LCSRCSLCERANELVNHLLLHCTFTRQIWTMFRAIFGVELVMPGCIK 277
L +RC LC+R E ++H+LLHC R +W + ++FGV+ V+P +K
Sbjct: 468 LANRCYLCQRHEESIDHILLHCDKARTLWVLLFSMFGVQWVLPAMVK 514
Score = 23.5 bits (49), Expect(2) = 2e-06
Identities = 9/23 (39%), Positives = 11/23 (47%)
Frame = +1
Query: 55 WP*RTIWKTIAHPRATCFTWITT 123
+P IWK PR + F W T
Sbjct: 429 FPSSAIWKVSVQPRVSFFGWEAT 451
>ref|XP_006362709.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
tuberosum]
Length = 217
Score = 46.2 bits (108), Expect(2) = 2e-06
Identities = 22/46 (47%), Positives = 26/46 (56%)
Frame = +2
Query: 137 LCSRCSLCERANELVNHLLLHCTFTRQIWTMFRAIFGVELVMPGCI 274
L S C LCE E VNHL LHC +T Q+W MF ++ PG I
Sbjct: 92 LRSSCYLCEEQVETVNHLFLHCKWTDQLWQMFIQKRKIKWTKPGSI 137
Score = 30.8 bits (68), Expect(2) = 2e-06
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 55 WP*RTIWKTIAHPRATCFTWITTQQACFVQQMLS 156
WP R IW+T + FTW+ +QA + L+
Sbjct: 53 WPWRMIWRTEIPYKVNYFTWLLAKQAVLTHENLN 86
>ref|XP_006353602.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
tuberosum]
Length = 517
Score = 46.2 bits (108), Expect(2) = 3e-06
Identities = 19/43 (44%), Positives = 25/43 (58%)
Frame = +2
Query: 137 LCSRCSLCERANELVNHLLLHCTFTRQIWTMFRAIFGVELVMP 265
L RC LC +E +HL LHC +T QIW +F +I + MP
Sbjct: 392 LVPRCFLCNLTSETNSHLFLHCNYTAQIWNLFLSISNLNWTMP 434
Score = 30.4 bits (67), Expect(2) = 3e-06
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 73 WKTIAHPRATCFTWITTQQACFVQQML 153
WK + CFTW+ ++AC Q++L
Sbjct: 359 WKGDIPTKVKCFTWLVIKRACLTQEVL 385
>ref|XP_006354966.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
tuberosum]
Length = 397
Score = 50.1 bits (118), Expect(2) = 3e-06
Identities = 17/44 (38%), Positives = 26/44 (59%)
Frame = +2
Query: 137 LCSRCSLCERANELVNHLLLHCTFTRQIWTMFRAIFGVELVMPG 268
+C RC CE+ E +NHL LHC ++W +F + G+ +PG
Sbjct: 272 MCPRCCFCEQVAETINHLFLHCKVVGKLWNLFTSFRGISWTVPG 315
Score = 26.6 bits (57), Expect(2) = 3e-06
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +1
Query: 1 VKVCHRNLLGNMRSIQKDWP*RTIWKTIAHPRATCFTWITTQQACFVQQML 153
V +RN+ M S P + IWK + FTW+ ++A Q+ L
Sbjct: 216 VSSAYRNM-NQMGSQVNFLPWKLIWKVKIPYKVVVFTWLVVKEAVLTQENL 265
>ref|XP_006345710.1| PREDICTED: putative ribonuclease H protein At1g65750-like isoform
X2 [Solanum tuberosum]
Length = 284
Score = 46.2 bits (108), Expect(2) = 3e-06
Identities = 19/43 (44%), Positives = 25/43 (58%)
Frame = +2
Query: 137 LCSRCSLCERANELVNHLLLHCTFTRQIWTMFRAIFGVELVMP 265
L RC LC +E +HL LHC +T QIW +F +I + MP
Sbjct: 159 LVPRCFLCNLTSETNSHLFLHCNYTAQIWNLFLSISNLNWTMP 201
Score = 30.4 bits (67), Expect(2) = 3e-06
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 73 WKTIAHPRATCFTWITTQQACFVQQML 153
WK + CFTW+ ++AC Q++L
Sbjct: 126 WKGDIPTKVKCFTWLVIKRACLTQEVL 152
>ref|XP_006345709.1| PREDICTED: putative ribonuclease H protein At1g65750-like isoform
X1 [Solanum tuberosum]
Length = 284
Score = 45.1 bits (105), Expect(2) = 6e-06
Identities = 19/43 (44%), Positives = 24/43 (55%)
Frame = +2
Query: 137 LCSRCSLCERANELVNHLLLHCTFTRQIWTMFRAIFGVELVMP 265
L RC LC +E +HL LHC +T QIW +F I + MP
Sbjct: 159 LVPRCFLCNLTSETNSHLFLHCNYTAQIWNLFLNISNLNWTMP 201
Score = 30.4 bits (67), Expect(2) = 6e-06
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 73 WKTIAHPRATCFTWITTQQACFVQQML 153
WK + CFTW+ ++AC Q++L
Sbjct: 126 WKGDIPTKVKCFTWLVIKRACLTQEVL 152