BLASTX nr result
ID: Atropa21_contig00042239
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Atropa21_contig00042239
(647 letters)
Database: nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptas... 171 4e-48
emb|CCA65997.1| hypothetical protein [Beta vulgaris subsp. vulga... 167 8e-46
ref|XP_006490008.1| PREDICTED: uncharacterized protein LOC102624... 166 7e-45
emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulga... 163 7e-45
gb|ABO80459.1| RNA-directed DNA polymerase (Reverse transcriptas... 152 1e-40
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta... 146 2e-40
emb|CCA65995.1| hypothetical protein [Beta vulgaris subsp. vulga... 147 8e-40
gb|EMJ28511.1| hypothetical protein PRUPE_ppa016553mg [Prunus pe... 143 4e-39
gb|EMJ04543.1| hypothetical protein PRUPE_ppa020282mg [Prunus pe... 139 8e-39
emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis ... 142 1e-38
ref|XP_004289445.1| PREDICTED: putative ribonuclease H protein A... 157 3e-38
ref|XP_006491472.1| PREDICTED: uncharacterized protein LOC102626... 143 9e-38
emb|CCA66020.1| hypothetical protein [Beta vulgaris subsp. vulga... 142 6e-37
gb|EMJ00800.1| hypothetical protein PRUPE_ppa023095mg, partial [... 140 7e-37
emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulga... 145 3e-36
emb|CCA66044.1| hypothetical protein [Beta vulgaris subsp. vulga... 132 3e-36
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta... 143 6e-36
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta... 143 6e-36
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip... 142 1e-35
gb|EMJ26294.1| hypothetical protein PRUPE_ppa016563mg, partial [... 133 1e-35
>gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
[Medicago truncatula]
Length = 1296
Score = 171 bits (433), Expect(2) = 4e-48
Identities = 83/179 (46%), Positives = 119/179 (66%)
Frame = -2
Query: 550 NAFETGTIPDTINNTYLCLIPKFKNVNDLKKFRSIGLCNTFYKVITKIIANRIKSFLDTL 371
+AF TG I+NT + LIPK + N K FR I LCNT YK+ITK++ +R++ FL+ L
Sbjct: 476 SAFLTGHFDPAISNTLIALIPKIDSPNTYKDFRPISLCNTLYKIITKVLVHRLRPFLNNL 535
Query: 370 ISPYQSSFMKNRRSCDNAIIIQEIFAYLQKFKSRKYRMILKIDLEKTFDRLEWSFIYRSL 191
I PYQSSF+ R + DN+II+QEI ++++ K +K + K+DLEK FD + W F+ L
Sbjct: 536 IGPYQSSFLPGRGTADNSIILQEILHFMKRSKRKKGYVAFKLDLEKAFDNVNWDFLNSCL 595
Query: 190 KFFKFPPMLTNLIMNCVTTSHIAVLVNGCKSEFFTSSRETRQGDPMSP*IFTLCMELLS 14
F FP ++ LIM+CV++++ ++L NG K F + RQGDP+SP +F LCME LS
Sbjct: 596 LDFGFPDIIVKLIMHCVSSANYSLLWNGNKMPPFKPTHGLRQGDPLSPYLFILCMEKLS 654
Score = 47.0 bits (110), Expect(2) = 4e-48
Identities = 17/22 (77%), Positives = 20/22 (90%)
Frame = -3
Query: 639 FKAPGPDGFHPFFYKKYWHIVG 574
+KAPGPDGFH F+K+YWHIVG
Sbjct: 446 YKAPGPDGFHCIFFKQYWHIVG 467
>emb|CCA65997.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1363
Score = 167 bits (423), Expect(2) = 8e-46
Identities = 88/182 (48%), Positives = 120/182 (65%)
Frame = -2
Query: 547 AFETGTIPDTINNTYLCLIPKFKNVNDLKKFRSIGLCNTFYKVITKIIANRIKSFLDTLI 368
AFE IP +++++L LIPK ++ K FR IGLCNT YK+ITK+IANRIK L LI
Sbjct: 479 AFENNRIPSGLSDSFLALIPKIESPVCCKDFRPIGLCNTVYKMITKVIANRIKPILGELI 538
Query: 367 SPYQSSFMKNRRSCDNAIIIQEIFAYLQKFKSRKYRMILKIDLEKTFDRLEWSFIYRSLK 188
P Q+SF+ R +N II +E+ +K ++ M LKIDL K +D LEW FI +L+
Sbjct: 539 HPSQTSFVPGRNIQENIIIAKEMAFLFKKSNPKRNIMALKIDLSKAYDSLEWGFIRETLQ 598
Query: 187 FFKFPPMLTNLIMNCVTTSHIAVLVNGCKSEFFTSSRETRQGDPMSP*IFTLCMELLSRL 8
F FP L LIM+C+++ I+++ NG ++ F+ SR RQGDP+SP IF LCME LS L
Sbjct: 599 GFNFPQSLIALIMDCISSPAISLIWNGEVTQSFSPSRGIRQGDPLSPYIFVLCMERLSML 658
Query: 7 IN 2
I+
Sbjct: 659 IS 660
Score = 43.1 bits (100), Expect(2) = 8e-46
Identities = 16/25 (64%), Positives = 20/25 (80%)
Frame = -3
Query: 636 KAPGPDGFHPFFYKKYWHIVGPSLV 562
K+PGPDG FF+KKYW +GPS+V
Sbjct: 449 KSPGPDGIQAFFFKKYWEQMGPSVV 473
>ref|XP_006490008.1| PREDICTED: uncharacterized protein LOC102624085 [Citrus sinensis]
Length = 1635
Score = 166 bits (421), Expect(2) = 7e-45
Identities = 87/192 (45%), Positives = 115/192 (59%)
Frame = -2
Query: 577 GSFFGKIL*NAFETGTIPDTINNTYLCLIPKFKNVNDLKKFRSIGLCNTFYKVITKIIAN 398
G F K + F+T +P +N T L LIPK + +R I LC YK ITKIIAN
Sbjct: 961 GESFCKAIKEVFQTQCLPAEVNRTVLVLIPKIEQPTSFSMYRPISLCTVMYKTITKIIAN 1020
Query: 397 RIKSFLDTLISPYQSSFMKNRRSCDNAIIIQEIFAYLQKFKSRKYRMILKIDLEKTFDRL 218
R++ L LI P+Q+SF+ R +N I+ QEI +++ K RK M +K+DL K +DRL
Sbjct: 1021 RLQELLPELIGPHQTSFVPGRHITENIIVAQEIIHSMRRKKGRKGFMAIKVDLGKAYDRL 1080
Query: 217 EWSFIYRSLKFFKFPPMLTNLIMNCVTTSHIAVLVNGCKSEFFTSSRETRQGDPMSP*IF 38
W+FI +L+ P ML NLIM C+TT+ + VL NG S F R RQGDP+SP IF
Sbjct: 1081 SWTFIQETLQELNLPTMLINLIMECITTATMNVLWNGELSSEFCPGRGVRQGDPLSPYIF 1140
Query: 37 TLCMELLSRLIN 2
LC+E LS I+
Sbjct: 1141 VLCIERLSHGIS 1152
Score = 40.8 bits (94), Expect(2) = 7e-45
Identities = 18/29 (62%), Positives = 19/29 (65%)
Frame = -3
Query: 636 KAPGPDGFHPFFYKKYWHIVGPSLVKFCK 550
KAPG DG H FY+ WHIVG S FCK
Sbjct: 941 KAPGVDGLHAIFYQSQWHIVGES---FCK 966
>emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1378
Score = 163 bits (412), Expect(2) = 7e-45
Identities = 79/175 (45%), Positives = 116/175 (66%)
Frame = -2
Query: 526 PDTINNTYLCLIPKFKNVNDLKKFRSIGLCNTFYKVITKIIANRIKSFLDTLISPYQSSF 347
P+ N+T++ LIPK K FR IGLCN YK++TK+I NR+K L +LISP Q SF
Sbjct: 488 PEGFNDTFIVLIPKMDIPQLAKHFRPIGLCNIVYKIVTKVIINRLKPILPSLISPTQCSF 547
Query: 346 MKNRRSCDNAIIIQEIFAYLQKFKSRKYRMILKIDLEKTFDRLEWSFIYRSLKFFKFPPM 167
+ NR+ DN II+QE+F ++ + +K M +KID EK +DRL W+FI SL + P
Sbjct: 548 VPNRQITDNVIIVQEMFHSMRNKQGKKGFMAVKIDFEKAYDRLRWTFIRESLMELRIPQH 607
Query: 166 LTNLIMNCVTTSHIAVLVNGCKSEFFTSSRETRQGDPMSP*IFTLCMELLSRLIN 2
L +++MNCV+++++ +L NG E +R RQGDP+SP ++ +CME L+ LI+
Sbjct: 608 LVDIVMNCVSSANLQILWNGEPMEKICPTRGLRQGDPLSPYLYVICMERLAHLID 662
Score = 44.3 bits (103), Expect(2) = 7e-45
Identities = 15/26 (57%), Positives = 22/26 (84%)
Frame = -3
Query: 639 FKAPGPDGFHPFFYKKYWHIVGPSLV 562
FKAPGPDGF P FY+++W +V P+++
Sbjct: 450 FKAPGPDGFQPLFYQRFWDLVKPNVM 475
>gb|ABO80459.1| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
[Medicago truncatula]
Length = 869
Score = 152 bits (385), Expect(2) = 1e-40
Identities = 81/184 (44%), Positives = 113/184 (61%), Gaps = 2/184 (1%)
Frame = -2
Query: 547 AFETGTIPDTINNTYLCLIPKFKNV--NDLKKFRSIGLCNTFYKVITKIIANRIKSFLDT 374
AF TG TI+ T + LIPK K FR I L N YK+ITK+I +R++ L+
Sbjct: 35 AFHTGFFDPTISETLIALIPKIDPPPPQTYKDFRPISLYNITYKIITKVIVHRLRPILND 94
Query: 373 LISPYQSSFMKNRRSCDNAIIIQEIFAYLQKFKSRKYRMILKIDLEKTFDRLEWSFIYRS 194
+I PYQSSF++ R + DN+I++QEI ++++ K +K + K+DLEK FD + W F+
Sbjct: 95 IIGPYQSSFLQGRGTSDNSIVLQEIVHFMRRSKRKKGYVAFKLDLEKAFDNVNWEFLRSC 154
Query: 193 LKFFKFPPMLTNLIMNCVTTSHIAVLVNGCKSEFFTSSRETRQGDPMSP*IFTLCMELLS 14
L+ F FP LIM+CVT+S +VL NG K + RQGDP+SP +F +CME LS
Sbjct: 155 LQDFGFPDDTIKLIMHCVTSSTFSVLWNGNKWPPIKPTHGLRQGDPLSPYLFIICMEKLS 214
Query: 13 RLIN 2
IN
Sbjct: 215 LAIN 218
Score = 40.4 bits (93), Expect(2) = 1e-40
Identities = 14/21 (66%), Positives = 18/21 (85%)
Frame = -3
Query: 639 FKAPGPDGFHPFFYKKYWHIV 577
+K+PGPDGF F+K+YWHIV
Sbjct: 4 YKSPGPDGFQCIFFKQYWHIV 24
>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1231
Score = 146 bits (368), Expect(2) = 2e-40
Identities = 73/180 (40%), Positives = 112/180 (62%)
Frame = -2
Query: 544 FETGTIPDTINNTYLCLIPKFKNVNDLKKFRSIGLCNTFYKVITKIIANRIKSFLDTLIS 365
FETG +P + N+ L LI K +++FR + LCN +K+ITK++ R+K+ + LI
Sbjct: 339 FETGVLPASTNDALLVLIAKVAKPERIQQFRPVSLCNVLFKIITKMMVTRLKNVISKLIG 398
Query: 364 PYQSSFMKNRRSCDNAIIIQEIFAYLQKFKSRKYRMILKIDLEKTFDRLEWSFIYRSLKF 185
P Q+SF+ R S DN +++QE +++ K RK M+LK+DLEK +DR+ W F+ +L+
Sbjct: 399 PAQASFIPGRLSIDNIVLVQEAVHSMRRKKGRKGWMLLKLDLEKAYDRVRWDFLQETLEA 458
Query: 184 FKFPPMLTNLIMNCVTTSHIAVLVNGCKSEFFTSSRETRQGDPMSP*IFTLCMELLSRLI 5
T+ IM VT ++VL NG +++ F +R RQGDP+SP +F LC+E L LI
Sbjct: 459 AGLSEGWTSRIMAGVTDPSMSVLWNGERTDSFVPARGLRQGDPLSPYLFVLCLERLCHLI 518
Score = 46.6 bits (109), Expect(2) = 2e-40
Identities = 17/28 (60%), Positives = 22/28 (78%)
Frame = -3
Query: 639 FKAPGPDGFHPFFYKKYWHIVGPSLVKF 556
FKAPGPDG+ P FY++ W VGPS+ +F
Sbjct: 307 FKAPGPDGYQPVFYQQCWETVGPSVTRF 334
>emb|CCA65995.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1389
Score = 147 bits (372), Expect(2) = 8e-40
Identities = 75/178 (42%), Positives = 108/178 (60%)
Frame = -2
Query: 544 FETGTIPDTINNTYLCLIPKFKNVNDLKKFRSIGLCNTFYKVITKIIANRIKSFLDTLIS 365
F +G + +N+T+L LIPK + FR I LC+T YKVI+KII NR+K L +I
Sbjct: 491 FHSGYMLKEVNHTFLALIPKVDKPVNANHFRPISLCSTIYKVISKIITNRLKITLGKIIH 550
Query: 364 PYQSSFMKNRRSCDNAIIIQEIFAYLQKFKSRKYRMILKIDLEKTFDRLEWSFIYRSLKF 185
P Q +F+ R DN +I E+F + R + +K+D+EK +DRLEW +IY ++
Sbjct: 551 PLQGAFIPERLIQDNILIAHEVFHSFKNKTGRGGWIAIKLDMEKAYDRLEWKYIYTTMDK 610
Query: 184 FKFPPMLTNLIMNCVTTSHIAVLVNGCKSEFFTSSRETRQGDPMSP*IFTLCMELLSR 11
F P+ I +C++++ +VLVNG E F SR RQGDP+SP +F LC ELL+R
Sbjct: 611 MGFSPIWIEWIRSCISSASFSVLVNGIPGERFFPSRGIRQGDPLSPYLFILCAELLAR 668
Score = 42.7 bits (99), Expect(2) = 8e-40
Identities = 14/26 (53%), Positives = 22/26 (84%)
Frame = -3
Query: 636 KAPGPDGFHPFFYKKYWHIVGPSLVK 559
K+PGPDGF P+F++KYW ++G S+ +
Sbjct: 460 KSPGPDGFPPYFFQKYWTLIGKSVCR 485
>gb|EMJ28511.1| hypothetical protein PRUPE_ppa016553mg [Prunus persica]
Length = 992
Score = 143 bits (360), Expect(2) = 4e-39
Identities = 74/192 (38%), Positives = 114/192 (59%), Gaps = 1/192 (0%)
Frame = -2
Query: 577 GSFFGKIL*NAFETGTIPDTINNTYLCLIPKFKNVNDLKKFRSIGLCNTFYKVITKIIAN 398
GS + + + +G + IN T++ LIPK K+ D+ + R I LCN +K+ TK++AN
Sbjct: 109 GSDVTRAIKDFLTSGRLLQKINFTHVVLIPKVKHPKDMSQLRPISLCNVLFKIATKVLAN 168
Query: 397 RIKSFLDTLISPYQSSFMKNRRSCDNAIIIQEIFAYL-QKFKSRKYRMILKIDLEKTFDR 221
R+K LD +ISP QS+ + R DN I+ EI YL ++ + +K M LK+D+ K +DR
Sbjct: 169 RLKLILDKIISPSQSALISGRLISDNTILAAEIIHYLRRRRRGKKGFMALKMDMSKAYDR 228
Query: 220 LEWSFIYRSLKFFKFPPMLTNLIMNCVTTSHIAVLVNGCKSEFFTSSRETRQGDPMSP*I 41
+EWSF+ ++ F L++ C++T + ++NG F SR RQGDP+SP +
Sbjct: 229 IEWSFLEAIMRKLGFAEQWIQLMLTCISTVSYSFVINGTPHGFLHPSRGLRQGDPLSPYL 288
Query: 40 FTLCMELLSRLI 5
F LC E L+ LI
Sbjct: 289 FLLCAEGLTALI 300
Score = 45.1 bits (105), Expect(2) = 4e-39
Identities = 17/29 (58%), Positives = 21/29 (72%)
Frame = -3
Query: 636 KAPGPDGFHPFFYKKYWHIVGPSLVKFCK 550
KAPGPDG P F++KYWHIVG + + K
Sbjct: 89 KAPGPDGMPPIFFQKYWHIVGSDVTRAIK 117
>gb|EMJ04543.1| hypothetical protein PRUPE_ppa020282mg [Prunus persica]
Length = 1496
Score = 139 bits (350), Expect(2) = 8e-39
Identities = 74/181 (40%), Positives = 107/181 (59%), Gaps = 1/181 (0%)
Frame = -2
Query: 544 FETGTIPDTINNTYLCLIPKFKNVNDLKKFRSIGLCNTFYKVITKIIANRIKSFLDTLIS 365
F+TG + IN T++ LIPK ++ + R I LCN YK+ K++ R+K+ L TLIS
Sbjct: 838 FKTGKLLKRINFTHVALIPKVHEPKNMMQLRPISLCNVLYKIGAKVLTTRLKAILPTLIS 897
Query: 364 PYQSSFMKNRRSCDNAIIIQEIFAYL-QKFKSRKYRMILKIDLEKTFDRLEWSFIYRSLK 188
QS+F+ R DN+I+ E+ + +K + R+ + LKID+ K +DR+EWSF+ +K
Sbjct: 898 DTQSAFVPGRAISDNSIVAFELLHMMHKKNQGRQGYLALKIDMSKAYDRVEWSFLEALMK 957
Query: 187 FFKFPPMLTNLIMNCVTTSHIAVLVNGCKSEFFTSSRETRQGDPMSP*IFTLCMELLSRL 8
F P LIM CVTT + ++NG + R RQGDP+SP +F LC E LS L
Sbjct: 958 GMGFAPRWIQLIMECVTTVSYSFMLNGNPVGYVIPQRGLRQGDPLSPYLFLLCAEALSSL 1017
Query: 7 I 5
I
Sbjct: 1018 I 1018
Score = 47.8 bits (112), Expect(2) = 8e-39
Identities = 19/25 (76%), Positives = 21/25 (84%)
Frame = -3
Query: 636 KAPGPDGFHPFFYKKYWHIVGPSLV 562
KAPGPDGF PFFY+KYW IVG +V
Sbjct: 807 KAPGPDGFSPFFYQKYWPIVGEDVV 831
>emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis thaliana]
gi|7268307|emb|CAB78601.1| reverse transcriptase like
protein [Arabidopsis thaliana]
Length = 929
Score = 142 bits (359), Expect(2) = 1e-38
Identities = 72/191 (37%), Positives = 111/191 (58%)
Frame = -2
Query: 577 GSFFGKIL*NAFETGTIPDTINNTYLCLIPKFKNVNDLKKFRSIGLCNTFYKVITKIIAN 398
G K + FE+G +P + N+ L L+ K + +FR + LCN +K+ITK++
Sbjct: 280 GESVSKFVMEFFESGVLPKSTNDVLLVLLAKVAKPERITQFRPVSLCNVLFKIITKMMVI 339
Query: 397 RIKSFLDTLISPYQSSFMKNRRSCDNAIIIQEIFAYLQKFKSRKYRMILKIDLEKTFDRL 218
R+K+ + LI P Q+SF+ R S DN +++QE +++ K RK M+LK+DLEK +DR+
Sbjct: 340 RLKNVISKLIGPAQASFIPGRLSFDNIVVVQEAVHSMRRKKGRKGWMLLKLDLEKAYDRI 399
Query: 217 EWSFIYRSLKFFKFPPMLTNLIMNCVTTSHIAVLVNGCKSEFFTSSRETRQGDPMSP*IF 38
W F+ +L+ IM CV +++L NG K++ FT R RQGDP+SP +F
Sbjct: 400 RWDFLAETLEAAGLSEGWIKRIMECVAGPEMSLLWNGEKTDSFTPERGLRQGDPISPYLF 459
Query: 37 TLCMELLSRLI 5
LC+E L I
Sbjct: 460 VLCIERLCHQI 470
Score = 43.9 bits (102), Expect(2) = 1e-38
Identities = 17/28 (60%), Positives = 21/28 (75%)
Frame = -3
Query: 639 FKAPGPDGFHPFFYKKYWHIVGPSLVKF 556
FKAPGPDG+ P FY++ W VG S+ KF
Sbjct: 259 FKAPGPDGYQPVFYQQCWETVGESVSKF 286
>ref|XP_004289445.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
vesca subsp. vesca]
Length = 719
Score = 157 bits (396), Expect(2) = 3e-38
Identities = 85/194 (43%), Positives = 112/194 (57%)
Frame = -2
Query: 583 YCGSFFGKIL*NAFETGTIPDTINNTYLCLIPKFKNVNDLKKFRSIGLCNTFYKVITKII 404
Y F ++ AF + ++P +N T + LIPKF+ + FR I LCNT YKVI+KII
Sbjct: 79 YASKIFN-VVNTAFSSCSVPPDLNQTIISLIPKFEGPQHMVNFRPISLCNTIYKVISKII 137
Query: 403 ANRIKSFLDTLISPYQSSFMKNRRSCDNAIIIQEIFAYLQKFKSRKYRMILKIDLEKTFD 224
RI+ F+ LI P Q S++ R DN +I QE+ +K K+DL K +D
Sbjct: 138 VARIRPFMQQLIIPNQVSYVPGRHISDNIMIAQELLFKFKKSCGSLGFFAWKVDLSKAYD 197
Query: 223 RLEWSFIYRSLKFFKFPPMLTNLIMNCVTTSHIAVLVNGCKSEFFTSSRETRQGDPMSP* 44
RL WSFI + L KFP L LIM+C+TT+ + NG + F + R RQGDP+SP
Sbjct: 198 RLRWSFIEQILFEAKFPSTLVKLIMSCITTTSFQICFNGELTSSFKAQRGIRQGDPLSPY 257
Query: 43 IFTLCMELLSRLIN 2
IF LCME LS LIN
Sbjct: 258 IFVLCMEKLSHLIN 271
Score = 28.1 bits (61), Expect(2) = 3e-38
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -3
Query: 636 KAPGPDGFHPFFYKKYW 586
KAPG DGF FY+ +W
Sbjct: 60 KAPGVDGFPAIFYQHHW 76
>ref|XP_006491472.1| PREDICTED: uncharacterized protein LOC102626455 [Citrus sinensis]
Length = 1452
Score = 143 bits (360), Expect(2) = 9e-38
Identities = 73/181 (40%), Positives = 113/181 (62%), Gaps = 1/181 (0%)
Frame = -2
Query: 541 ETGTIPDTINNTYLCLIPKFKNVNDLKKFRSIGLCNTFYKVITKIIANRIKSFLDTLISP 362
E GT+ D++N+T++ LIPK + + +FR I LCN Y+++ K IANR+K L+ +ISP
Sbjct: 572 EQGTL-DSLNHTFIALIPKVEKPRKVMEFRPISLCNVVYRIVAKAIANRLKPILNHIISP 630
Query: 361 YQSSFMKNRRSCDNAIIIQEIFAYLQKFKSRKYRMI-LKIDLEKTFDRLEWSFIYRSLKF 185
QS+F+ NR DN II E ++ K R+ ++ LK+D+ K +DR+EW+F+ +++
Sbjct: 631 NQSAFIPNRLITDNVIIGYECLHKIRLSKGRRNGLVALKLDISKAYDRVEWNFLEQTMSN 690
Query: 184 FKFPPMLTNLIMNCVTTSHIAVLVNGCKSEFFTSSRETRQGDPMSP*IFTLCMELLSRLI 5
F +LIM+C+TT+ +VL+NG R RQG P+SP +F LC E S L+
Sbjct: 691 LGFSAKWISLIMSCITTTCFSVLINGNPVGLIKPERGLRQGCPLSPYLFILCAEAFSNLL 750
Query: 4 N 2
N
Sbjct: 751 N 751
Score = 40.4 bits (93), Expect(2) = 9e-38
Identities = 16/28 (57%), Positives = 19/28 (67%)
Frame = -3
Query: 636 KAPGPDGFHPFFYKKYWHIVGPSLVKFC 553
KAPGPDG F++K+W IVG L K C
Sbjct: 539 KAPGPDGLPAAFFQKHWQIVGEGLTKTC 566
>emb|CCA66020.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1365
Score = 142 bits (358), Expect(2) = 6e-37
Identities = 74/181 (40%), Positives = 108/181 (59%), Gaps = 1/181 (0%)
Frame = -2
Query: 544 FETGTIPDTINNTYLCLIPKFKNVNDLKKFRSIGLCNTFYKVITKIIANRIKSFLDTLIS 365
F TG I N T +CLIPK + +FR I LCN YK+I+KIIANR+K L ++++
Sbjct: 488 FTTGYILQEWNQTNICLIPKVERPEQACQFRPISLCNVIYKIISKIIANRLKPILKSIVT 547
Query: 364 PYQSSFMKNRRSCDNAIIIQEIFAYL-QKFKSRKYRMILKIDLEKTFDRLEWSFIYRSLK 188
PYQ++F+ R DN +I E+ + Q+ K + LKID+ K +D+++W F++ L
Sbjct: 548 PYQNAFVPGRLISDNCLIAHEVVNLIKQRKKGTHFLAALKIDMFKAYDKVDWDFLFWLLT 607
Query: 187 FFKFPPMLTNLIMNCVTTSHIAVLVNGCKSEFFTSSRETRQGDPMSP*IFTLCMELLSRL 8
FP IM CVTT +++VNG + F S RQGDP+S +F L M++LSRL
Sbjct: 608 QMGFPSFYRQWIMQCVTTVSYSIIVNGEPTTRFKPSCGLRQGDPLSSYLFILIMDVLSRL 667
Query: 7 I 5
+
Sbjct: 668 L 668
Score = 38.5 bits (88), Expect(2) = 6e-37
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = -3
Query: 642 SFKAPGPDGFHPFFYKKYWHIVGPSL 565
S KAPGPDG FY+K+W IVG +
Sbjct: 455 SLKAPGPDGIPAIFYQKHWSIVGEDI 480
>gb|EMJ00800.1| hypothetical protein PRUPE_ppa023095mg, partial [Prunus persica]
Length = 933
Score = 140 bits (354), Expect(2) = 7e-37
Identities = 76/182 (41%), Positives = 114/182 (62%), Gaps = 2/182 (1%)
Frame = -2
Query: 544 FETG-TIPDTINNTYLCLIPKFKNVNDLKKFRSIGLCNTFYKVITKIIANRIKSFLDTLI 368
F TG IP +N+T + LIPK N + +FR I LCN YK+++KI+ANR+K L ++I
Sbjct: 121 FFTGQAIPKPLNSTQIVLIPKIPNPEAVSQFRPISLCNFSYKILSKILANRLKPHLPSII 180
Query: 367 SPYQSSFMKNRRSCDNAIIIQEIFAYLQKFKS-RKYRMILKIDLEKTFDRLEWSFIYRSL 191
SP Q++F+ +R+ DN ++ E+F L+ KS +K+ M +K+D+ K +DR+EW F
Sbjct: 181 SPTQNAFVPDRQIQDNILVAHEVFHALKLKKSKKKFEMGVKLDMNKAYDRVEWDF----- 235
Query: 190 KFFKFPPMLTNLIMNCVTTSHIAVLVNGCKSEFFTSSRETRQGDPMSP*IFTLCMELLSR 11
L L+M+CVTT + V++NG + F+ SR RQGDP+SP +F E+LS
Sbjct: 236 --------LEKLVMSCVTTVNFTVVINGQRGGAFSPSRGIRQGDPISPYLFLFISEVLSL 287
Query: 10 LI 5
LI
Sbjct: 288 LI 289
Score = 39.7 bits (91), Expect(2) = 7e-37
Identities = 15/20 (75%), Positives = 16/20 (80%)
Frame = -3
Query: 636 KAPGPDGFHPFFYKKYWHIV 577
KAPGPDGFH FY KYW I+
Sbjct: 91 KAPGPDGFHGTFYHKYWGII 110
>emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1369
Score = 145 bits (365), Expect(2) = 3e-36
Identities = 74/172 (43%), Positives = 105/172 (61%), Gaps = 1/172 (0%)
Frame = -2
Query: 517 INNTYLCLIPKFKNVNDLKKFRSIGLCNTFYKVITKIIANRIKSFLDTLISPYQSSFMKN 338
+N T++ LIPK K+ FR I LCN YK++ K++ANR+K L +I QS F+
Sbjct: 493 VNQTHIVLIPKKKHCESPVDFRPISLCNVLYKIVAKVLANRMKMVLPMVIHESQSGFVPG 552
Query: 337 RRSCDNAIIIQEIFAYLQKFKSRKYRMI-LKIDLEKTFDRLEWSFIYRSLKFFKFPPMLT 161
R DN ++ E F +L+K K+ K + LK+D+ K +DR+EW F+ + FP T
Sbjct: 553 RLITDNVLVAYECFHFLRKKKTGKKGYLGLKLDMSKAYDRVEWCFLENMMLKLGFPTRYT 612
Query: 160 NLIMNCVTTSHIAVLVNGCKSEFFTSSRETRQGDPMSP*IFTLCMELLSRLI 5
L+MNCVT++ +VLVNG S F SR RQGDP+SP +F +C E LS L+
Sbjct: 613 KLVMNCVTSARFSVLVNGQPSRNFFPSRGLRQGDPLSPFLFVVCAEGLSTLL 664
Score = 33.5 bits (75), Expect(2) = 3e-36
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -3
Query: 636 KAPGPDGFHPFFYKKYWHIVG 574
KAPGPDG + FY+ +W +G
Sbjct: 453 KAPGPDGMNALFYQHFWDTIG 473
>emb|CCA66044.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1355
Score = 132 bits (331), Expect(2) = 3e-36
Identities = 68/175 (38%), Positives = 105/175 (60%), Gaps = 1/175 (0%)
Frame = -2
Query: 526 PDTINNTYLCLIPKFKNVNDLKKFRSIGLCNTFYKVITKIIANRIKSFLDTLISPYQSSF 347
P IN+T + LIPK KN +FR I LCN YK+++K + R+K FL L+S QS+F
Sbjct: 485 PSCINHTNIALIPKVKNPTTPAEFRPIALCNVVYKLVSKALVIRLKDFLPRLVSENQSAF 544
Query: 346 MKNRRSCDNAIIIQEIFAYLQ-KFKSRKYRMILKIDLEKTFDRLEWSFIYRSLKFFKFPP 170
+ R DNA+I E+F ++ + +SRK + +K+D+ K +DR+EW F+ + L F
Sbjct: 545 VPGRLITDNALIAMEVFHSMKHRNRSRKGTIAMKLDMSKAYDRVEWGFLRKLLLTMGFDG 604
Query: 169 MLTNLIMNCVTTSHIAVLVNGCKSEFFTSSRETRQGDPMSP*IFTLCMELLSRLI 5
NLIM+CV++ + ++NG T +R R GDP+SP +F L + S++I
Sbjct: 605 RWVNLIMSCVSSVSYSFIINGGVCGSVTPARGLRHGDPLSPYLFILIADAFSKMI 659
Score = 46.6 bits (109), Expect(2) = 3e-36
Identities = 16/27 (59%), Positives = 21/27 (77%)
Frame = -3
Query: 636 KAPGPDGFHPFFYKKYWHIVGPSLVKF 556
KAPGPDG H FY+K+WHI+G + +F
Sbjct: 448 KAPGPDGMHAIFYQKFWHIIGDDVTQF 474
>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1750
Score = 143 bits (361), Expect(2) = 6e-36
Identities = 74/182 (40%), Positives = 110/182 (60%), Gaps = 1/182 (0%)
Frame = -2
Query: 544 FETGTIPDTINNTYLCLIPKFKNVNDLKKFRSIGLCNTFYKVITKIIANRIKSFLDTLIS 365
FET + +IN+T +C+IPK N L +R I LCN YKVI+K + NR+KS L++++S
Sbjct: 857 FETSFMKPSINHTNICMIPKITNPTTLSDYRPIALCNVLYKVISKCLVNRLKSHLNSIVS 916
Query: 364 PYQSSFMKNRRSCDNAIIIQEIFAYLQKFKS-RKYRMILKIDLEKTFDRLEWSFIYRSLK 188
Q++F+ R DN +I E+ L+ K K M +K D+ K +DR+EW F+ +++
Sbjct: 917 DSQAAFIPGRIINDNVMIAHEVMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMR 976
Query: 187 FFKFPPMLTNLIMNCVTTSHIAVLVNGCKSEFFTSSRETRQGDPMSP*IFTLCMELLSRL 8
F F IM V + H +VL+NG + T +R RQGDP+SP +F LC ++LS L
Sbjct: 977 LFGFCNKWIGWIMAAVKSVHYSVLINGSPHGYITPTRGIRQGDPLSPYLFILCGDILSHL 1036
Query: 7 IN 2
IN
Sbjct: 1037 IN 1038
Score = 33.9 bits (76), Expect(2) = 6e-36
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -3
Query: 636 KAPGPDGFHPFFYKKYWHIVGPSLV 562
KAPGPDG FYK W IVG ++
Sbjct: 826 KAPGPDGLTARFYKNCWDIVGYDVI 850
>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1524
Score = 143 bits (361), Expect(2) = 6e-36
Identities = 74/182 (40%), Positives = 110/182 (60%), Gaps = 1/182 (0%)
Frame = -2
Query: 544 FETGTIPDTINNTYLCLIPKFKNVNDLKKFRSIGLCNTFYKVITKIIANRIKSFLDTLIS 365
FET + +IN+T +C+IPK N L +R I LCN YKVI+K + NR+KS L++++S
Sbjct: 631 FETSFMKPSINHTNICMIPKITNPTTLSDYRPIALCNVLYKVISKCLVNRLKSHLNSIVS 690
Query: 364 PYQSSFMKNRRSCDNAIIIQEIFAYLQKFKS-RKYRMILKIDLEKTFDRLEWSFIYRSLK 188
Q++F+ R DN +I E+ L+ K K M +K D+ K +DR+EW F+ +++
Sbjct: 691 DSQAAFIPGRIINDNVMIAHEVMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMR 750
Query: 187 FFKFPPMLTNLIMNCVTTSHIAVLVNGCKSEFFTSSRETRQGDPMSP*IFTLCMELLSRL 8
F F IM V + H +VL+NG + T +R RQGDP+SP +F LC ++LS L
Sbjct: 751 LFGFCNKWIGWIMAAVKSVHYSVLINGSPHGYITPTRGIRQGDPLSPYLFILCGDILSHL 810
Query: 7 IN 2
IN
Sbjct: 811 IN 812
Score = 33.9 bits (76), Expect(2) = 6e-36
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -3
Query: 636 KAPGPDGFHPFFYKKYWHIVGPSLV 562
KAPGPDG FYK W IVG ++
Sbjct: 600 KAPGPDGLTARFYKNCWDIVGYDVI 624
>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
72.31) [Arabidopsis thaliana]
Length = 928
Score = 142 bits (359), Expect(2) = 1e-35
Identities = 76/181 (41%), Positives = 110/181 (60%)
Frame = -2
Query: 544 FETGTIPDTINNTYLCLIPKFKNVNDLKKFRSIGLCNTFYKVITKIIANRIKSFLDTLIS 365
F G +P IN+T L LIPK K ++K +R I CN YKVI+KIIANR+K L I
Sbjct: 388 FAKGFLPKGINSTILALIPKKKEAKEMKDYRPISCCNVLYKVISKIIANRLKLVLPKFIV 447
Query: 364 PYQSSFMKNRRSCDNAIIIQEIFAYLQKFKSRKYRMILKIDLEKTFDRLEWSFIYRSLKF 185
QS+F+K+R +N ++ EI K S R LKID+ K FD ++W F+ L+
Sbjct: 448 GNQSAFVKDRLLIENVLLATEIVKDYHK-DSVSSRCALKIDISKAFDSVQWKFLINVLEA 506
Query: 184 FKFPPMLTNLIMNCVTTSHIAVLVNGCKSEFFTSSRETRQGDPMSP*IFTLCMELLSRLI 5
FPP T+ I C+TT+ +V VNG + F+S+RE RQG +SP +F + M++LS+++
Sbjct: 507 MNFPPEFTHWITLCITTASFSVQVNGELAGVFSSARELRQGCSLSPYLFVISMDVLSKML 566
Query: 4 N 2
+
Sbjct: 567 D 567
Score = 33.9 bits (76), Expect(2) = 1e-35
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -3
Query: 636 KAPGPDGFHPFFYKKYWHIVGPSLV 562
K+PGPDG+ FYK W+I+G +
Sbjct: 357 KSPGPDGYTAEFYKGAWNIIGAEFI 381
>gb|EMJ26294.1| hypothetical protein PRUPE_ppa016563mg, partial [Prunus persica]
Length = 925
Score = 133 bits (334), Expect(2) = 1e-35
Identities = 66/168 (39%), Positives = 104/168 (61%), Gaps = 1/168 (0%)
Frame = -2
Query: 517 INNTYLCLIPKFKNVNDLKKFRSIGLCNTFYKVITKIIANRIKSFLDTLISPYQSSFMKN 338
+N+T++ LIPK K + + R I LCN Y++ K +ANR+K + ++IS QS+F+
Sbjct: 83 LNHTFVTLIPKVKEPRTMAQLRPISLCNVLYRIGAKTLANRMKFVMQSVISESQSAFVPG 142
Query: 337 RRSCDNAIIIQEIFAYL-QKFKSRKYRMILKIDLEKTFDRLEWSFIYRSLKFFKFPPMLT 161
R DN+I+ EI +L Q+ + RK + LK+D+ K +DR+EW F+ + + FP +
Sbjct: 143 RLITDNSIVAFEIAHFLKQRRRGRKGSLALKLDMSKAYDRVEWEFLEKMMLAMGFPILWV 202
Query: 160 NLIMNCVTTSHIAVLVNGCKSEFFTSSRETRQGDPMSP*IFTLCMELL 17
++M+CVTT + LVNG + +R RQGDP+SP +F LC E+L
Sbjct: 203 RMVMDCVTTVSYSFLVNGEPTRILYPTRGLRQGDPLSPYLFLLCAEVL 250
Score = 43.5 bits (101), Expect(2) = 1e-35
Identities = 17/25 (68%), Positives = 19/25 (76%)
Frame = -3
Query: 636 KAPGPDGFHPFFYKKYWHIVGPSLV 562
KAPGPDG P FY+KYW IVG +V
Sbjct: 43 KAPGPDGLPPLFYQKYWRIVGDDVV 67