BLASTX nr result
ID: Atropa21_contig00041916
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Atropa21_contig00041916
(656 letters)
Database: nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004253224.1| PREDICTED: uncharacterized protein LOC101268... 87 4e-23
ref|XP_006342323.1| PREDICTED: putative ribonuclease H protein A... 112 1e-22
ref|XP_006605183.1| PREDICTED: uncharacterized protein LOC102663... 60 6e-13
ref|XP_006584238.1| PREDICTED: uncharacterized protein LOC102664... 56 1e-12
emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga... 55 2e-12
gb|ABD33260.1| non-LTR retroelement reverse transcriptase-like p... 75 2e-11
ref|XP_006579104.1| PREDICTED: uncharacterized protein LOC102661... 57 5e-11
emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulga... 50 9e-10
ref|XP_006582615.1| PREDICTED: uncharacterized protein LOC102665... 51 3e-08
ref|XP_006360398.1| PREDICTED: uncharacterized protein LOC102602... 63 7e-08
ref|XP_006579213.1| PREDICTED: uncharacterized protein LOC102670... 51 1e-07
ref|XP_006586426.1| PREDICTED: putative ribonuclease H protein A... 54 5e-07
ref|XP_002331075.1| predicted protein [Populus trichocarpa] 60 6e-07
ref|XP_006584200.1| PREDICTED: putative ribonuclease H protein A... 47 1e-06
dbj|BAB08270.1| non-LTR retroelement reverse transcriptase-like ... 51 2e-06
ref|XP_006590026.1| PREDICTED: uncharacterized protein LOC102660... 53 2e-06
emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thal... 53 2e-06
dbj|BAB01344.1| reverse transcriptase-like protein [Arabidopsis ... 50 5e-06
ref|XP_006584390.1| PREDICTED: putative ribonuclease H protein A... 51 9e-06
>ref|XP_004253224.1| PREDICTED: uncharacterized protein LOC101268376 [Solanum
lycopersicum]
Length = 717
Score = 87.4 bits (215), Expect(2) = 4e-23
Identities = 35/53 (66%), Positives = 44/53 (83%)
Frame = +2
Query: 20 VLFGIHAFWAQLFILPTKVLKFIESNCRSYLWSGTGAITKKTLVAWERVCNPK 178
VLFG+ A WAQLFI+P K++K IE CRSYLWSG G +TKK L+AW++VC+PK
Sbjct: 610 VLFGVQALWAQLFIIPAKIIKLIEGLCRSYLWSGVGYVTKKALIAWDKVCSPK 662
Score = 47.0 bits (110), Expect(2) = 4e-23
Identities = 19/35 (54%), Positives = 27/35 (77%)
Frame = +3
Query: 180 GLNITNLYVCNRTAIAKQQWDIAHKQDKLWIR*IH 284
GL + NL + NR+A+ K WD+A+K+DKLWI+ IH
Sbjct: 666 GLGLINLKIWNRSAVTKLCWDLANKEDKLWIKWIH 700
>ref|XP_006342323.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
tuberosum]
Length = 170
Score = 112 bits (280), Expect = 1e-22
Identities = 63/154 (40%), Positives = 86/154 (55%)
Frame = +2
Query: 20 VLFGIHAFWAQLFILPTKVLKFIESNCRSYLWSGTGAITKKTLVAWERVCNPKGVEYY*F 199
VLFGI A+WAQLFI+P+KV+K I+ +CRSY+WSGT ITKK LV W+RVC+PK V
Sbjct: 6 VLFGIQAYWAQLFIIPSKVIKLIDVHCRSYVWSGTNTITKKALVVWKRVCSPKSVGGLNL 65
Query: 200 VCLQQDSYS*TAVGHCS*TRQTVD*MNSHMQCLQMQNYTLANWDQHQKWLIKPSRGRSQR 379
+ L + + A HC Q+ W Q+ +I ++G++
Sbjct: 66 INLHSWNKAGIA-KHC-------------WDLEYKQDKLWIKWSQYVLGIIDAAKGKTPT 111
Query: 380 AQILKMTCTEVVHVI*FERNKRTF*KQSSNWEAV 481
AQI K+ E V+ I ERN R F K S WE++
Sbjct: 112 AQIFKLVYIEYVYAIWIERNHRIFEKDSRIWESL 145
>ref|XP_006605183.1| PREDICTED: uncharacterized protein LOC102663533 [Glycine max]
Length = 514
Score = 60.1 bits (144), Expect(2) = 6e-13
Identities = 22/52 (42%), Positives = 38/52 (73%)
Frame = +2
Query: 20 VLFGIHAFWAQLFILPTKVLKFIESNCRSYLWSGTGAITKKTLVAWERVCNP 175
++ I +W +F +P KV++ I+S CRS++WSG+ + +K+LVAW++VC P
Sbjct: 291 IITAIAQYWMSVFPMPKKVIQKIDSICRSFIWSGSAEVKRKSLVAWKQVCKP 342
Score = 40.0 bits (92), Expect(2) = 6e-13
Identities = 17/35 (48%), Positives = 24/35 (68%)
Frame = +3
Query: 180 GLNITNLYVCNRTAIAKQQWDIAHKQDKLWIR*IH 284
GLN+ NL + N TA+ K W+I K+D LW++ IH
Sbjct: 347 GLNLINLELWNVTAMLKCLWNICSKEDNLWVKWIH 381
>ref|XP_006584238.1| PREDICTED: uncharacterized protein LOC102664824 [Glycine max]
Length = 939
Score = 55.8 bits (133), Expect(2) = 1e-12
Identities = 24/53 (45%), Positives = 34/53 (64%)
Frame = +2
Query: 20 VLFGIHAFWAQLFILPTKVLKFIESNCRSYLWSGTGAITKKTLVAWERVCNPK 178
V+F FW Q LP V+ I + CRS+LW G I++K+ +AWE+VC+PK
Sbjct: 630 VIFATINFWMQCLPLPKFVIMRINAICRSFLWIGNSNISRKSPIAWEKVCSPK 682
Score = 43.5 bits (101), Expect(2) = 1e-12
Identities = 18/39 (46%), Positives = 26/39 (66%)
Frame = +3
Query: 171 IQRGLNITNLYVCNRTAIAKQQWDIAHKQDKLWIR*IHT 287
I GLNI NL + N+ +I K W++ +K D LWI+ +HT
Sbjct: 683 INGGLNIINLAIWNKISILKLLWNVCNKSDNLWIKWLHT 721
>emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1114
Score = 54.7 bits (130), Expect(2) = 2e-12
Identities = 21/53 (39%), Positives = 35/53 (66%)
Frame = +2
Query: 20 VLFGIHAFWAQLFILPTKVLKFIESNCRSYLWSGTGAITKKTLVAWERVCNPK 178
+L+ + +W Q+F LP K++K +E+ CR +LW+GT + K VAW+ + PK
Sbjct: 805 ILYSMQNYWGQIFPLPKKLIKAVETTCRKFLWTGTVDTSYKAPVAWDFLQQPK 857
Score = 43.9 bits (102), Expect(2) = 2e-12
Identities = 18/32 (56%), Positives = 23/32 (71%)
Frame = +3
Query: 180 GLNITNLYVCNRTAIAKQQWDIAHKQDKLWIR 275
GLN+TN+ + N+ AI K W I KQDKLW+R
Sbjct: 861 GLNVTNMVLWNKAAILKLLWAITFKQDKLWVR 892
>gb|ABD33260.1| non-LTR retroelement reverse transcriptase-like protein, related
[Medicago truncatula]
Length = 120
Score = 74.7 bits (182), Expect = 2e-11
Identities = 28/53 (52%), Positives = 41/53 (77%)
Frame = +2
Query: 20 VLFGIHAFWAQLFILPTKVLKFIESNCRSYLWSGTGAITKKTLVAWERVCNPK 178
VLFG+ +W+Q+F+LP KVLK I++ CR +LW+G +K+ L+AWER+C PK
Sbjct: 46 VLFGVQTYWSQVFVLPQKVLKLIQTACRVFLWTGKSGTSKRALIAWERICLPK 98
>ref|XP_006579104.1| PREDICTED: uncharacterized protein LOC102661523 [Glycine max]
Length = 947
Score = 57.0 bits (136), Expect(2) = 5e-11
Identities = 23/47 (48%), Positives = 32/47 (68%)
Frame = +2
Query: 41 FWAQLFILPTKVLKFIESNCRSYLWSGTGAITKKTLVAWERVCNPKG 181
FW Q +P V+K I+S CRS++WS + IT+K+ +AW VC PKG
Sbjct: 637 FWMQCLPIPMSVIKKIDSMCRSFVWSRSTEITRKSPIAWNSVCRPKG 683
Score = 36.6 bits (83), Expect(2) = 5e-11
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +3
Query: 174 QRGLNITNLYVCNRTAIAKQQWDIAHKQDKLWIR*IH 284
Q GLNI NL V N + W++ K D LW++ IH
Sbjct: 684 QGGLNIFNLKVWNHITVLNCLWNLCKKVDNLWVKWIH 720
>emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1110
Score = 49.7 bits (117), Expect(2) = 9e-10
Identities = 21/53 (39%), Positives = 31/53 (58%)
Frame = +2
Query: 20 VLFGIHAFWAQLFILPTKVLKFIESNCRSYLWSGTGAITKKTLVAWERVCNPK 178
+L + +WA +F L KV++ +E CR +LW+G TKK VAW + PK
Sbjct: 802 ILSSMQNYWAHIFPLSKKVIQAVEKVCRKFLWTGKTEETKKAPVAWATIQRPK 854
Score = 39.7 bits (91), Expect(2) = 9e-10
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = +3
Query: 180 GLNITNLYVCNRTAIAKQQWDIAHKQDKLWIR*IHT 287
G N+ N+ NR A+ K W I K+DKLW+R IH+
Sbjct: 858 GWNVINMKYWNRAAMLKLLWAIEFKRDKLWVRWIHS 893
>ref|XP_006582615.1| PREDICTED: uncharacterized protein LOC102665746 [Glycine max]
Length = 506
Score = 50.8 bits (120), Expect(2) = 3e-08
Identities = 20/53 (37%), Positives = 35/53 (66%)
Frame = +2
Query: 20 VLFGIHAFWAQLFILPTKVLKFIESNCRSYLWSGTGAITKKTLVAWERVCNPK 178
V+F + +W F P VL+ IE+ CR +LW+G ++K+ VAW+++C+P+
Sbjct: 188 VMFALTNYWLNCFPFPKSVLQKIEAICRIFLWTGGFEGSRKSPVAWKQICSPR 240
Score = 33.5 bits (75), Expect(2) = 3e-08
Identities = 11/32 (34%), Positives = 22/32 (68%)
Frame = +3
Query: 180 GLNITNLYVCNRTAIAKQQWDIAHKQDKLWIR 275
GLNI ++ + N+ + K W+++ K+D LW++
Sbjct: 244 GLNIIDIDIWNKANLMKLLWNLSSKEDSLWVK 275
>ref|XP_006360398.1| PREDICTED: uncharacterized protein LOC102602440 [Solanum tuberosum]
Length = 170
Score = 63.2 bits (152), Expect = 7e-08
Identities = 43/156 (27%), Positives = 74/156 (47%), Gaps = 10/156 (6%)
Frame = +2
Query: 131 ITKKTLVAWERVCNPKGVEYY*FVCLQQDSYS*TAVGHCS*TRQTVD*MNSHMQCLQMQN 310
+T L+ W +PK +C + + HC +Q M++ +Q+
Sbjct: 23 LTTDRLIKWGMQIDPKCP-----LCCKHEETKEHLFVHCDYAKQIWIKMDNWTT---IQH 74
Query: 311 YTLANWDQHQKWLIKPSRGRSQRAQILKMTCTEVVHVI*FERNKRTF*KQSSNWEAVT*G 490
T++ WDQH W+I S+G SQ AQ+ K+ +E ++ I ERN R F K+ WE++
Sbjct: 75 CTISTWDQHLDWMIANSKGNSQGAQVFKIVYSETIYAIWMERNFRIFEKRDREWESIAKE 134
Query: 491 KCL*FVLE----------VHLDFNVYCNLLCSRLVF 568
+VLE ++L F++ C + S+ +F
Sbjct: 135 IAYVYVLELLPKSSVLSKIYLSFSI-CLVAPSKFLF 169
>ref|XP_006579213.1| PREDICTED: uncharacterized protein LOC102670237 [Glycine max]
Length = 383
Score = 51.2 bits (121), Expect(2) = 1e-07
Identities = 24/53 (45%), Positives = 29/53 (54%)
Frame = +2
Query: 20 VLFGIHAFWAQLFILPTKVLKFIESNCRSYLWSGTGAITKKTLVAWERVCNPK 178
V+ GI FW +F LP VL I + CR++LW K LVAW VC PK
Sbjct: 128 VIQGIANFWMSIFPLPQSVLDTIIATCRNFLWGKADGGKIKPLVAWSEVCTPK 180
Score = 30.8 bits (68), Expect(2) = 1e-07
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 180 GLNITNLYVCNRTAIAKQQWDIAHKQDKLWIR*IH 284
GL + NL N ++ WD+ K+D LW+R +H
Sbjct: 184 GLGLFNLKDWNIALLSCILWDLHSKKDSLWVRLVH 218
>ref|XP_006586426.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Glycine
max]
Length = 192
Score = 53.9 bits (128), Expect(2) = 5e-07
Identities = 23/53 (43%), Positives = 33/53 (62%)
Frame = +2
Query: 20 VLFGIHAFWAQLFILPTKVLKFIESNCRSYLWSGTGAITKKTLVAWERVCNPK 178
V+ GI FW ++F LP V+ +I ++CR++LW K LVAW VC+PK
Sbjct: 97 VIQGIVNFWMEIFSLPQSVMDWINASCRNFLWGKADIGKNKPLVAWSVVCSPK 149
Score = 26.2 bits (56), Expect(2) = 5e-07
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 180 GLNITNLYVCNRTAIAKQQWDIAHKQDKLW 269
GL + NL N +++ WD K+D LW
Sbjct: 153 GLGLLNLKDWNLALLSRILWDFHCKKDSLW 182
>ref|XP_002331075.1| predicted protein [Populus trichocarpa]
Length = 517
Score = 60.1 bits (144), Expect = 6e-07
Identities = 26/53 (49%), Positives = 36/53 (67%)
Frame = +2
Query: 20 VLFGIHAFWAQLFILPTKVLKFIESNCRSYLWSGTGAITKKTLVAWERVCNPK 178
VLF I +WA LF+LP +V+K +E +S+LWSG+ T VAW++VC PK
Sbjct: 104 VLFSIQVYWASLFLLPGQVIKNVEQIMKSFLWSGSDMRTTGAKVAWDQVCLPK 156
>ref|XP_006584200.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Glycine
max]
Length = 239
Score = 46.6 bits (109), Expect(2) = 1e-06
Identities = 21/53 (39%), Positives = 31/53 (58%)
Frame = +2
Query: 20 VLFGIHAFWAQLFILPTKVLKFIESNCRSYLWSGTGAITKKTLVAWERVCNPK 178
V+ GI FW ++F L VL I ++C ++LW K+L+AW VC+PK
Sbjct: 140 VIQGIVNFWMKIFPLSQSVLDRINASCCNFLWGKADIGKNKSLIAWSVVCSPK 192
Score = 32.3 bits (72), Expect(2) = 1e-06
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +3
Query: 180 GLNITNLYVCNRTAIAKQQWDIAHKQDKLWIR*IH 284
GL + NL N T +++ WD K+D LW+R +H
Sbjct: 196 GLGLFNLKDWNLTLLSRILWDFHCKKDFLWVRWVH 230
>dbj|BAB08270.1| non-LTR retroelement reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 489
Score = 51.2 bits (121), Expect(2) = 2e-06
Identities = 23/53 (43%), Positives = 30/53 (56%)
Frame = +2
Query: 20 VLFGIHAFWAQLFILPTKVLKFIESNCRSYLWSGTGAITKKTLVAWERVCNPK 178
VL+ I FW F LP + ++ I+ C +YLWSG T K +AW VC PK
Sbjct: 199 VLWSICNFWMGAFRLPRECIREIDKMCSAYLWSGGDLNTSKAKIAWTDVCKPK 251
Score = 26.9 bits (58), Expect(2) = 2e-06
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +3
Query: 180 GLNITNLYVCNRTAIAKQQWDIAHKQDKLWIR*IH 284
GL + +L N + K W I D LW++ IH
Sbjct: 255 GLGLRSLKEANDVSCLKLIWRIISHADSLWVKWIH 289
>ref|XP_006590026.1| PREDICTED: uncharacterized protein LOC102660482 [Glycine max]
Length = 303
Score = 53.1 bits (126), Expect(2) = 2e-06
Identities = 25/53 (47%), Positives = 32/53 (60%)
Frame = +2
Query: 20 VLFGIHAFWAQLFILPTKVLKFIESNCRSYLWSGTGAITKKTLVAWERVCNPK 178
V+ GI FW +F LP VL I ++CR++LW KK LVAW VC+PK
Sbjct: 140 VIQGIVNFWIGIFPLPQSVLDRINASCRNFLWGKADIGKKKPLVAWSVVCSPK 192
Score = 25.0 bits (53), Expect(2) = 2e-06
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +3
Query: 180 GLNITNLYVCNRTAIAKQQWDIAHKQDKLWI 272
GL + NL N ++ WD K+D LW+
Sbjct: 196 GLGLFNLKDWNLALLSCILWDFHCKKDSLWV 226
>emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thaliana]
gi|7267919|emb|CAB78261.1| putative reverse
transcriptase [Arabidopsis thaliana]
Length = 662
Score = 52.8 bits (125), Expect(2) = 2e-06
Identities = 23/53 (43%), Positives = 31/53 (58%)
Frame = +2
Query: 20 VLFGIHAFWAQLFILPTKVLKFIESNCRSYLWSGTGAITKKTLVAWERVCNPK 178
VL+ I FW F LP + ++ I+ C ++LWSG T K +AWE VC PK
Sbjct: 335 VLWSICNFWLSAFRLPRECVREIDKLCSAFLWSGPELSTNKAKIAWETVCRPK 387
Score = 25.0 bits (53), Expect(2) = 2e-06
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = +3
Query: 180 GLNITNLYVCNRTAIAKQQWDIAHKQDKLWIR*IHT 287
GL + ++ N K W I + D LW++ I T
Sbjct: 391 GLGLQSIKEANDVCCLKLIWRIVSQGDSLWVQWIRT 426
>dbj|BAB01344.1| reverse transcriptase-like protein [Arabidopsis thaliana]
Length = 1115
Score = 49.7 bits (117), Expect(2) = 5e-06
Identities = 22/53 (41%), Positives = 30/53 (56%)
Frame = +2
Query: 20 VLFGIHAFWAQLFILPTKVLKFIESNCRSYLWSGTGAITKKTLVAWERVCNPK 178
VL+ FW F LP+ LK I S C ++LWSG +K V+W+ +C PK
Sbjct: 734 VLWSTMNFWMSAFRLPSACLKEINSICSAFLWSGPELNRRKAKVSWDDICKPK 786
Score = 26.9 bits (58), Expect(2) = 5e-06
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = +3
Query: 174 QRGLNITNLYVCNRTAIAKQQWDIAHKQDKLWIR 275
Q GL + +L N ++ K W + D LW++
Sbjct: 787 QGGLGLRSLTEANVVSVLKLIWRVTSNDDSLWVK 820
>ref|XP_006584390.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Glycine
max]
Length = 316
Score = 50.8 bits (120), Expect(2) = 9e-06
Identities = 24/53 (45%), Positives = 32/53 (60%)
Frame = +2
Query: 20 VLFGIHAFWAQLFILPTKVLKFIESNCRSYLWSGTGAITKKTLVAWERVCNPK 178
V+ GI FW ++F LP VL I ++C ++LWS K LVAW VC+PK
Sbjct: 173 VIQGIMNFWMRIFPLPQSVLDRINASCCNFLWSKADIGKNKPLVAWPVVCSPK 225
Score = 25.0 bits (53), Expect(2) = 9e-06
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +3
Query: 180 GLNITNLYVCNRTAIAKQQWDIAHKQDKLWIR*IH 284
GL + NL N ++ WD K+D L +R +H
Sbjct: 229 GLGLFNLKDWNLALLSHILWDFHCKKDSLRVRWVH 263