BLASTX nr result
ID: Atropa21_contig00041901
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Atropa21_contig00041901
(503 letters)
Database: nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004253224.1| PREDICTED: uncharacterized protein LOC101268... 74 4e-32
emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulga... 65 2e-28
ref|XP_006582615.1| PREDICTED: uncharacterized protein LOC102665... 61 4e-25
ref|XP_006584238.1| PREDICTED: uncharacterized protein LOC102664... 59 8e-25
emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga... 67 3e-22
ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298... 54 4e-19
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ... 56 8e-18
ref|XP_006579104.1| PREDICTED: uncharacterized protein LOC102661... 52 1e-17
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip... 55 8e-17
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta... 51 4e-16
gb|AAF87143.1|AC002423_8 T23E23.16 [Arabidopsis thaliana] 55 4e-16
gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana] 55 5e-16
gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thali... 48 1e-15
ref|XP_004239600.1| PREDICTED: uncharacterized protein LOC101264... 56 2e-15
gb|AAG51098.1|AC025295_6 hypothetical protein [Arabidopsis thali... 51 2e-15
emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thal... 49 7e-15
gb|AAD15471.1| putative non-LTR retroelement reverse transcripta... 51 8e-15
dbj|BAB08270.1| non-LTR retroelement reverse transcriptase-like ... 50 1e-14
ref|XP_002331075.1| predicted protein [Populus trichocarpa] 55 2e-14
ref|XP_006584200.1| PREDICTED: putative ribonuclease H protein A... 52 3e-14
>ref|XP_004253224.1| PREDICTED: uncharacterized protein LOC101268376 [Solanum
lycopersicum]
Length = 717
Score = 73.9 bits (180), Expect(3) = 4e-32
Identities = 36/79 (45%), Positives = 51/79 (64%)
Frame = +3
Query: 108 SIYLMLKAFNHFSVLSGLQANMEKSSLYMTGTTQVFRDQILEEMHFTLGKIPFKYLGVPL 287
SI + K F FS SGLQAN+ KSS+Y G R QI++++ +T+ ++PFKYLGVPL
Sbjct: 510 SIKALQKCFTEFSQASGLQANLNKSSIYCGGVQMEVRQQIIQQLGYTIEELPFKYLGVPL 569
Query: 288 SSRKITVQHVCLLWIRWWP 344
SS+K+ I+W+P
Sbjct: 570 SSKKLNT-------IQWYP 581
Score = 59.7 bits (143), Expect(3) = 4e-32
Identities = 26/61 (42%), Positives = 41/61 (67%)
Frame = +2
Query: 320 PLVDKMVARIRC*CTKFLYYSGRVQLIKSFLFEMQTY*GQIFLLTKKVINLATSICRTFL 499
PL++K++ARI K L Y+GR QL+K+ LF +Q Q+F++ K+I L +CR++L
Sbjct: 581 PLIEKVMARINSWTAKKLSYAGRAQLVKTVLFGVQALWAQLFIIPAKIIKLIEGLCRSYL 640
Query: 500 W 502
W
Sbjct: 641 W 641
Score = 50.4 bits (119), Expect(3) = 4e-32
Identities = 22/42 (52%), Positives = 29/42 (69%)
Frame = +1
Query: 4 MQYLNRSLKQLSHNPSFKYHPRCGKLKLVHICFADQFI*CSR 129
M+YL+R LK L + SFKYHP+ KL + H+CFAD + SR
Sbjct: 464 MEYLSRLLKGLKEDKSFKYHPKYAKLDVTHLCFADDLLLFSR 505
>emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1110
Score = 65.5 bits (158), Expect(3) = 2e-28
Identities = 35/73 (47%), Positives = 42/73 (57%)
Frame = +2
Query: 284 LVIKKDYSATCMPLVDKMVARIRC*CTKFLYYSGRVQLIKSFLFEMQTY*GQIFLLTKKV 463
L KK A C PLV+ + R + K L Y+GR+QLIKS L MQ Y IF L+KKV
Sbjct: 761 LTSKKLTYAQCKPLVEMITNRAQTWMAKLLSYAGRLQLIKSILSSMQNYWAHIFPLSKKV 820
Query: 464 INLATSICRTFLW 502
I +CR FLW
Sbjct: 821 IQAVEKVCRKFLW 833
Score = 59.3 bits (142), Expect(3) = 2e-28
Identities = 27/59 (45%), Positives = 40/59 (67%)
Frame = +3
Query: 129 AFNHFSVLSGLQANMEKSSLYMTGTTQVFRDQILEEMHFTLGKIPFKYLGVPLSSRKIT 305
AF FS SGL A+ EKS++Y G ++ + +H LG++PF+YLGVPL+S+K+T
Sbjct: 709 AFQKFSHASGLAASHEKSNIYFCGVDDETARELADYVHMQLGELPFRYLGVPLTSKKLT 767
Score = 46.6 bits (109), Expect(3) = 2e-28
Identities = 18/47 (38%), Positives = 30/47 (63%)
Frame = +1
Query: 4 MQYLNRSLKQLSHNPSFKYHPRCGKLKLVHICFADQFI*CSRLSTTS 144
M+YL+R L++L +P F +HP+C +L + H+ FAD + R +S
Sbjct: 656 MEYLSRCLEELKGSPDFNFHPKCERLNITHLMFADDLLMFCRADKSS 702
>ref|XP_006582615.1| PREDICTED: uncharacterized protein LOC102665746 [Glycine max]
Length = 506
Score = 60.8 bits (146), Expect(3) = 4e-25
Identities = 29/69 (42%), Positives = 45/69 (65%)
Frame = +3
Query: 108 SIYLMLKAFNHFSVLSGLQANMEKSSLYMTGTTQVFRDQILEEMHFTLGKIPFKYLGVPL 287
S+ +M++A+ FS +GL N +K SL G V + +ILE F G++PFKYLGVP+
Sbjct: 88 SVGMMMRAYESFSKATGLLVNPQKCSLLCAGIDAVTKREILEVSGFQEGQLPFKYLGVPV 147
Query: 288 SSRKITVQH 314
+S+K++ H
Sbjct: 148 TSKKLSTIH 156
Score = 52.0 bits (123), Expect(3) = 4e-25
Identities = 24/61 (39%), Positives = 36/61 (59%)
Frame = +2
Query: 320 PLVDKMVARIRC*CTKFLYYSGRVQLIKSFLFEMQTY*GQIFLLTKKVINLATSICRTFL 499
PL+DK+V +I+ + L Y+GR+QL+ S +F + Y F K V+ +ICR FL
Sbjct: 159 PLIDKIVGKIKHWTARLLSYAGRLQLVNSVMFALTNYWLNCFPFPKSVLQKIEAICRIFL 218
Query: 500 W 502
W
Sbjct: 219 W 219
Score = 47.8 bits (112), Expect(3) = 4e-25
Identities = 20/43 (46%), Positives = 29/43 (67%)
Frame = +1
Query: 1 VMQYLNRSLKQLSHNPSFKYHPRCGKLKLVHICFADQFI*CSR 129
VM+ LNR L ++ + F YHP+C KLK+ ++CFAD + SR
Sbjct: 41 VMECLNRYLYKMQKDGDFNYHPKCDKLKITNLCFADDLLLFSR 83
>ref|XP_006584238.1| PREDICTED: uncharacterized protein LOC102664824 [Glycine max]
Length = 939
Score = 59.3 bits (142), Expect(3) = 8e-25
Identities = 29/74 (39%), Positives = 44/74 (59%)
Frame = +3
Query: 105 GSIYLMLKAFNHFSVLSGLQANMEKSSLYMTGTTQVFRDQILEEMHFTLGKIPFKYLGVP 284
GS+ +ML FN F GL N K ++Y ++Q+L F GK+PF+YLG+P
Sbjct: 529 GSVQIMLDKFNTFLRSMGLHVNPSKCNIYCGSVDINVKEQLLLISGFKEGKMPFRYLGIP 588
Query: 285 LSSRKITVQHVCLL 326
LSS+K+ ++H +L
Sbjct: 589 LSSKKLNIKHYQVL 602
Score = 52.4 bits (124), Expect(3) = 8e-25
Identities = 22/43 (51%), Positives = 30/43 (69%)
Frame = +1
Query: 1 VMQYLNRSLKQLSHNPSFKYHPRCGKLKLVHICFADQFI*CSR 129
VM+YLNR L QL P+F YH +C K+K+ ++CFAD + SR
Sbjct: 483 VMEYLNRILSQLDKIPNFNYHSKCEKMKITNLCFADDLLLFSR 525
Score = 47.8 bits (112), Expect(3) = 8e-25
Identities = 27/60 (45%), Positives = 35/60 (58%)
Frame = +2
Query: 323 LVDKMVARIRC*CTKFLYYSGRVQLIKSFLFEMQTY*GQIFLLTKKVINLATSICRTFLW 502
L+DK+V RI L Y+GRVQLI+S +F + Q L K VI +ICR+FLW
Sbjct: 602 LIDKIVGRITHWSAGLLSYAGRVQLIQSVIFATINFWMQCLPLPKFVIMRINAICRSFLW 661
>emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1114
Score = 67.0 bits (162), Expect(2) = 3e-22
Identities = 33/73 (45%), Positives = 44/73 (60%)
Frame = +2
Query: 284 LVIKKDYSATCMPLVDKMVARIRC*CTKFLYYSGRVQLIKSFLFEMQTY*GQIFLLTKKV 463
L KK + C PL+DK+ R + L Y+GR+QL+K+ L+ MQ Y GQIF L KK+
Sbjct: 764 LASKKLNFSQCKPLIDKITTRAQGWVAHLLSYAGRLQLVKTILYSMQNYWGQIFPLPKKL 823
Query: 464 INLATSICRTFLW 502
I + CR FLW
Sbjct: 824 IKAVETTCRKFLW 836
Score = 63.5 bits (153), Expect(2) = 3e-22
Identities = 29/65 (44%), Positives = 44/65 (67%)
Frame = +3
Query: 108 SIYLMLKAFNHFSVLSGLQANMEKSSLYMTGTTQVFRDQILEEMHFTLGKIPFKYLGVPL 287
SI ++ AFN FS SGLQA++EKS +Y G +Q+ + + +G +PF+YLGVPL
Sbjct: 705 SISKIMAAFNSFSKASGLQASIEKSCIYFGGVCHEEAEQLADRIQMPIGSLPFRYLGVPL 764
Query: 288 SSRKI 302
+S+K+
Sbjct: 765 ASKKL 769
>ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298394 [Fragaria vesca
subsp. vesca]
Length = 958
Score = 53.9 bits (128), Expect(3) = 4e-19
Identities = 24/68 (35%), Positives = 43/68 (63%)
Frame = +3
Query: 108 SIYLMLKAFNHFSVLSGLQANMEKSSLYMTGTTQVFRDQILEEMHFTLGKIPFKYLGVPL 287
S+ + AF++F LS L+AN+ +S +++ G D +L+ +F+LG P +YLG+PL
Sbjct: 539 SVRTLHDAFSNFESLSSLKANVSESKIFLAGVDGNSSDSVLQVTNFSLGTCPVRYLGIPL 598
Query: 288 SSRKITVQ 311
+ K+ +Q
Sbjct: 599 ITSKLRMQ 606
Score = 48.5 bits (114), Expect(3) = 4e-19
Identities = 27/73 (36%), Positives = 39/73 (53%)
Frame = +2
Query: 284 LVIKKDYSATCMPLVDKMVARIRC*CTKFLYYSGRVQLIKSFLFEMQTY*GQIFLLTKKV 463
L+ K C PL+D++ RI+ K L ++GR+QLI+S L +Q Y +L KKV
Sbjct: 598 LITSKLRMQDCSPLLDRIETRIKSWENKVLSFAGRLQLIQSVLSSIQVYWASHLILPKKV 657
Query: 464 INLATSICRTFLW 502
+ R FLW
Sbjct: 658 LKDIEKRLRCFLW 670
Score = 37.7 bits (86), Expect(3) = 4e-19
Identities = 13/30 (43%), Positives = 22/30 (73%)
Frame = +1
Query: 28 KQLSHNPSFKYHPRCGKLKLVHICFADQFI 117
++++ +P F+YH RC +L L H+CFAD +
Sbjct: 501 RRINCSPCFRYHWRCDQLNLSHLCFADDLL 530
>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 1223
Score = 56.2 bits (134), Expect(3) = 8e-18
Identities = 22/66 (33%), Positives = 47/66 (71%)
Frame = +3
Query: 108 SIYLMLKAFNHFSVLSGLQANMEKSSLYMTGTTQVFRDQILEEMHFTLGKIPFKYLGVPL 287
SI ++K F+ F+ SGL+ ++EKS++Y+ G + R+++ + F+ G++P +YLG+PL
Sbjct: 717 SIERIIKVFDEFAKWSGLRISLEKSTVYLAGLSATARNEVADRFPFSSGQLPVRYLGLPL 776
Query: 288 SSRKIT 305
+++++
Sbjct: 777 ITKRLS 782
Score = 47.4 bits (111), Expect(3) = 8e-18
Identities = 24/73 (32%), Positives = 41/73 (56%)
Frame = +2
Query: 284 LVIKKDYSATCMPLVDKMVARIRC*CTKFLYYSGRVQLIKSFLFEMQTY*GQIFLLTKKV 463
L+ K+ + C+PL++++ RI ++FL Y+GR+ LI S L+ + + F L +K
Sbjct: 776 LITKRLSTTDCLPLLEQVRKRIGSWTSRFLSYAGRLNLISSVLWSICNFWLAAFRLPRKC 835
Query: 464 INLATSICRTFLW 502
I +C FLW
Sbjct: 836 IRELEKMCSAFLW 848
Score = 32.0 bits (71), Expect(3) = 8e-18
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 4 MQYLNRSLKQLSHNPSFKYHPRCGKLKLVHICFADQFI 117
M L++ L + + F YHP+C + L H+ FAD +
Sbjct: 671 MDVLSKMLDKAAAARHFGYHPKCKTMGLTHLSFADDLM 708
>ref|XP_006579104.1| PREDICTED: uncharacterized protein LOC102661523 [Glycine max]
Length = 947
Score = 52.4 bits (124), Expect(3) = 1e-17
Identities = 23/69 (33%), Positives = 41/69 (59%)
Frame = +3
Query: 108 SIYLMLKAFNHFSVLSGLQANMEKSSLYMTGTTQVFRDQILEEMHFTLGKIPFKYLGVPL 287
S+ +ML N FS +GL N K +Y G +++I + + G++P +YLGVPL
Sbjct: 530 SVEMMLHVINKFSATTGLVVNPNKCRIYFGGVDGTTKNKIQQISSYEEGQLPVRYLGVPL 589
Query: 288 SSRKITVQH 314
+S+K+ +++
Sbjct: 590 TSKKLNIKY 598
Score = 43.1 bits (100), Expect(3) = 1e-17
Identities = 21/62 (33%), Positives = 35/62 (56%)
Frame = +2
Query: 317 MPLVDKMVARIRC*CTKFLYYSGRVQLIKSFLFEMQTY*GQIFLLTKKVINLATSICRTF 496
+PL+DK+ RIR +K L +GRVQ++ + + + Q + VI S+CR+F
Sbjct: 600 LPLIDKITTRIRHWTSKLLNMTGRVQMVNCTITAIVQFWMQCLPIPMSVIKKIDSMCRSF 659
Query: 497 LW 502
+W
Sbjct: 660 VW 661
Score = 39.3 bits (90), Expect(3) = 1e-17
Identities = 16/39 (41%), Positives = 26/39 (66%)
Frame = +1
Query: 1 VMQYLNRSLKQLSHNPSFKYHPRCGKLKLVHICFADQFI 117
+M+YLNR L +L + +F +H +C KL + H+ FAD +
Sbjct: 483 MMEYLNRLLVKLQLDLNFNHHAKCEKLGITHLTFADDVL 521
>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
72.31) [Arabidopsis thaliana]
Length = 928
Score = 55.5 bits (132), Expect(3) = 8e-17
Identities = 25/66 (37%), Positives = 44/66 (66%)
Frame = +3
Query: 108 SIYLMLKAFNHFSVLSGLQANMEKSSLYMTGTTQVFRDQILEEMHFTLGKIPFKYLGVPL 287
SI ++K F+ SGL+ +MEKS++Y+ G +I+++ F +GK+P +YLG+PL
Sbjct: 605 SIDGIVKVLYEFAKWSGLKISMEKSTMYLAGVQASVYQEIVQKFSFDVGKLPVRYLGLPL 664
Query: 288 SSRKIT 305
S+++T
Sbjct: 665 VSKRLT 670
Score = 45.4 bits (106), Expect(3) = 8e-17
Identities = 22/73 (30%), Positives = 41/73 (56%)
Frame = +2
Query: 284 LVIKKDYSATCMPLVDKMVARIRC*CTKFLYYSGRVQLIKSFLFEMQTY*GQIFLLTKKV 463
LV K+ ++ C+PL++++ +I ++FL ++GR+ LI S L+ + + F L +
Sbjct: 664 LVSKRLTASDCLPLIEQLRKKIEAWTSRFLSFAGRLNLISSTLWSICNFWMAAFRLPRAC 723
Query: 464 INLATSICRTFLW 502
I +C FLW
Sbjct: 724 IREIDKLCSAFLW 736
Score = 31.2 bits (69), Expect(3) = 8e-17
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +1
Query: 4 MQYLNRSLKQLSHNPSFKYHPRCGKLKLVHICFADQFI 117
M L++ L + F YHP+C + L H+ FAD +
Sbjct: 559 MDVLSKMLDKAVGARQFGYHPKCRAIGLTHLSFADDLM 596
>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1216
Score = 50.8 bits (120), Expect(3) = 4e-16
Identities = 22/62 (35%), Positives = 39/62 (62%)
Frame = +3
Query: 120 MLKAFNHFSVLSGLQANMEKSSLYMTGTTQVFRDQILEEMHFTLGKIPFKYLGVPLSSRK 299
++K N F+ GL+ MEK++LY+ G + R + F +GK+P +YLG+PL +++
Sbjct: 442 IVKVLNQFAAKLGLKICMEKTTLYLAGVSDHSRQLMSSRYSFGVGKLPVRYLGLPLVTKR 501
Query: 300 IT 305
+T
Sbjct: 502 LT 503
Score = 39.7 bits (91), Expect(3) = 4e-16
Identities = 22/73 (30%), Positives = 39/73 (53%)
Frame = +2
Query: 284 LVIKKDYSATCMPLVDKMVARIRC*CTKFLYYSGRVQLIKSFLFEMQTY*GQIFLLTKKV 463
LV K+ ++ PL+D++ RI +++L ++GR+ LI S L+ + + F L ++
Sbjct: 497 LVTKRLTTSDYSPLIDQIRRRIGMWTSRYLSFAGRLSLINSVLWSITNFWMNAFRLPREC 556
Query: 464 INLATSICRTFLW 502
IN I LW
Sbjct: 557 INEINRISSALLW 569
Score = 39.3 bits (90), Expect(3) = 4e-16
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = +1
Query: 4 MQYLNRSLKQLSHNPSFKYHPRCGKLKLVHICFADQFI 117
M L+R L + + F YHPRC L L H+CFAD +
Sbjct: 392 MDVLSRMLDKAAGAREFGYHPRCKTLGLTHLCFADDLM 429
>gb|AAF87143.1|AC002423_8 T23E23.16 [Arabidopsis thaliana]
Length = 653
Score = 54.7 bits (130), Expect(3) = 4e-16
Identities = 24/66 (36%), Positives = 45/66 (68%)
Frame = +3
Query: 108 SIYLMLKAFNHFSVLSGLQANMEKSSLYMTGTTQVFRDQILEEMHFTLGKIPFKYLGVPL 287
SI +++ F+ F+ SGL+ +MEKS++Y+ G T+ +I F +G++P +YLG+PL
Sbjct: 244 SIDGIVEVFDIFAKFSGLKISMEKSTIYLAGVTEDVYHEIQNRYQFDVGQLPVRYLGLPL 303
Query: 288 SSRKIT 305
++++T
Sbjct: 304 VTKRLT 309
Score = 40.4 bits (93), Expect(3) = 4e-16
Identities = 23/73 (31%), Positives = 38/73 (52%)
Frame = +2
Query: 284 LVIKKDYSATCMPLVDKMVARIRC*CTKFLYYSGRVQLIKSFLFEMQTY*GQIFLLTKKV 463
LV K+ + PL++ + +I T++L Y+GR+ LI S L+ + + F L ++
Sbjct: 303 LVTKRLTATDYSPLLEHIKKKIGTWTTRYLSYAGRLNLITSVLWSICNFWLAAFRLPREC 362
Query: 464 INLATSICRTFLW 502
I IC FLW
Sbjct: 363 IREIDKICSAFLW 375
Score = 34.7 bits (78), Expect(3) = 4e-16
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 4 MQYLNRSLKQLSHNPSFKYHPRCGKLKLVHICFADQFI 117
M L++ L Q + F YH RC +L L H+ FAD +
Sbjct: 198 MDVLSKLLDQAASAKKFGYHSRCKELSLTHLSFADDLM 235
>gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]
Length = 740
Score = 55.1 bits (131), Expect(3) = 5e-16
Identities = 24/66 (36%), Positives = 44/66 (66%)
Frame = +3
Query: 108 SIYLMLKAFNHFSVLSGLQANMEKSSLYMTGTTQVFRDQILEEMHFTLGKIPFKYLGVPL 287
S+ ++ F F+ SGL ++EKS+LY+ G +++ R+ IL F G++P +YLG+PL
Sbjct: 290 SVEGVINIFKEFAGKSGLHISLEKSTLYLAGVSELNRNNILSAFPFASGQLPVRYLGLPL 349
Query: 288 SSRKIT 305
++++T
Sbjct: 350 LTKQMT 355
Score = 38.1 bits (87), Expect(3) = 5e-16
Identities = 21/73 (28%), Positives = 36/73 (49%)
Frame = +2
Query: 284 LVIKKDYSATCMPLVDKMVARIRC*CTKFLYYSGRVQLIKSFLFEMQTY*GQIFLLTKKV 463
L+ K+ +A PL+DK+ ++I + L Y+GR+ LI S + + + + L
Sbjct: 349 LLTKQMTTADYSPLLDKVRSKISSWTARSLSYAGRLALINSVIVSLSNFWMSAYRLPAGC 408
Query: 464 INLATSICRTFLW 502
I +C FLW
Sbjct: 409 IKEIEKLCSAFLW 421
Score = 36.2 bits (82), Expect(3) = 5e-16
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 4 MQYLNRSLKQLSHNPSFKYHPRCGKLKLVHICFADQFI 117
M L+ + + + + YHP+C KL L H+CFAD +
Sbjct: 244 MNVLSHMIDVAAVHRNIGYHPKCKKLSLTHLCFADDLM 281
>gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thaliana]
gi|20197043|gb|AAM14892.1| putative reverse transcriptase
[Arabidopsis thaliana]
Length = 1412
Score = 48.1 bits (113), Expect(3) = 1e-15
Identities = 22/63 (34%), Positives = 37/63 (58%)
Frame = +3
Query: 120 MLKAFNHFSVLSGLQANMEKSSLYMTGTTQVFRDQILEEMHFTLGKIPFKYLGVPLSSRK 299
+L F F+ SGL ++EKS+L+M + IL F G +P +YLG+PL +++
Sbjct: 976 VLAIFKDFAAFSGLNISLEKSTLFMASISSETCASILARFPFDSGSLPVRYLGLPLMTKR 1035
Query: 300 ITV 308
+T+
Sbjct: 1036 MTL 1038
Score = 44.3 bits (103), Expect(3) = 1e-15
Identities = 24/73 (32%), Positives = 39/73 (53%)
Frame = +2
Query: 284 LVIKKDYSATCMPLVDKMVARIRC*CTKFLYYSGRVQLIKSFLFEMQTY*GQIFLLTKKV 463
L+ K+ A C+PL++K+ +RI +FL Y+GR+QL+ S + + + F L +
Sbjct: 1031 LMTKRMTLADCLPLLEKIRSRISSWKNRFLSYAGRLQLLNSVISSLTKFWISAFRLPRAC 1090
Query: 464 INLATSICRTFLW 502
I I FLW
Sbjct: 1091 IREIEQISAAFLW 1103
Score = 35.8 bits (81), Expect(3) = 1e-15
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 4 MQYLNRSLKQLSHNPSFKYHPRCGKLKLVHICFADQFI 117
M L+ L + + F YHPRC + L H+CFAD +
Sbjct: 926 MNVLSAMLDKGAVEKRFGYHPRCRNMGLTHLCFADDIM 963
>ref|XP_004239600.1| PREDICTED: uncharacterized protein LOC101264629 [Solanum
lycopersicum]
Length = 261
Score = 55.8 bits (133), Expect(2) = 2e-15
Identities = 25/59 (42%), Positives = 40/59 (67%)
Frame = +3
Query: 108 SIYLMLKAFNHFSVLSGLQANMEKSSLYMTGTTQVFRDQILEEMHFTLGKIPFKYLGVP 284
S+ + F+ FS S LQAN+ KSS+Y G Q ++QI++++ + + ++PFKYLGVP
Sbjct: 200 SVKAIQLCFSQFSQASRLQANLSKSSIYCGGVQQEVKNQIVQQLGYNMEELPFKYLGVP 258
Score = 52.0 bits (123), Expect(2) = 2e-15
Identities = 20/38 (52%), Positives = 27/38 (71%)
Frame = +1
Query: 4 MQYLNRSLKQLSHNPSFKYHPRCGKLKLVHICFADQFI 117
M+YL+R LK L + F+YHPRC KL + H+CFAD +
Sbjct: 154 MKYLSRLLKGLKEDKQFRYHPRCSKLDITHLCFADDLL 191
>gb|AAG51098.1|AC025295_6 hypothetical protein [Arabidopsis thaliana]
Length = 504
Score = 51.2 bits (121), Expect(3) = 2e-15
Identities = 21/66 (31%), Positives = 43/66 (65%)
Frame = +3
Query: 108 SIYLMLKAFNHFSVLSGLQANMEKSSLYMTGTTQVFRDQILEEMHFTLGKIPFKYLGVPL 287
SI ++ F+ F+ S L+ +MEKS++Y+ G + R ++++ F +G +P +YLG+PL
Sbjct: 47 SIEGIVDVFDTFAKCSDLKISMEKSTVYLAGLSHTTRQEVIDRFSFAVGTLPVRYLGLPL 106
Query: 288 SSRKIT 305
+++ +
Sbjct: 107 VTKQFS 112
Score = 41.6 bits (96), Expect(3) = 2e-15
Identities = 23/73 (31%), Positives = 37/73 (50%)
Frame = +2
Query: 284 LVIKKDYSATCMPLVDKMVARIRC*CTKFLYYSGRVQLIKSFLFEMQTY*GQIFLLTKKV 463
LV K+ S +PL+D + +I +FL Y+GR+ LI S L+ + + F L +
Sbjct: 106 LVTKQFSSTDYLPLIDHIKQKICSWSARFLSYTGRLNLISSILWSICNFWMGAFRLPRDC 165
Query: 464 INLATSICRTFLW 502
I +C +LW
Sbjct: 166 IREIDKMCSAYLW 178
Score = 34.7 bits (78), Expect(3) = 2e-15
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 4 MQYLNRSLKQLSHNPSFKYHPRCGKLKLVHICFADQFI 117
M L++ L + + F YHPRC ++ L H+ FAD +
Sbjct: 1 MDVLSKLLDKAAGQRKFGYHPRCKQIGLTHLSFADDLM 38
>emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thaliana]
gi|7267919|emb|CAB78261.1| putative reverse
transcriptase [Arabidopsis thaliana]
Length = 662
Score = 48.5 bits (114), Expect(3) = 7e-15
Identities = 19/64 (29%), Positives = 42/64 (65%)
Frame = +3
Query: 120 MLKAFNHFSVLSGLQANMEKSSLYMTGTTQVFRDQILEEMHFTLGKIPFKYLGVPLSSRK 299
+++ F+ F+ SGL+ +M K+++Y G ++ + ++ HF +G++P +YL +PL +++
Sbjct: 239 IVEVFDSFAKQSGLKISMAKTTIYFAGISKSVCKEFEDQFHFAVGRLPVRYLCLPLVTKR 298
Query: 300 ITVQ 311
T Q
Sbjct: 299 FTSQ 302
Score = 42.0 bits (97), Expect(3) = 7e-15
Identities = 22/73 (30%), Positives = 38/73 (52%)
Frame = +2
Query: 284 LVIKKDYSATCMPLVDKMVARIRC*CTKFLYYSGRVQLIKSFLFEMQTY*GQIFLLTKKV 463
LV K+ S PL++++ RI +FL Y+GR+ L+ S L+ + + F L ++
Sbjct: 294 LVTKRFTSQDYSPLLEQIKRRIGTWTARFLSYAGRLNLVSSVLWSICNFWLSAFRLPREC 353
Query: 464 INLATSICRTFLW 502
+ +C FLW
Sbjct: 354 VREIDKLCSAFLW 366
Score = 35.0 bits (79), Expect(3) = 7e-15
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +1
Query: 1 VMQYLNRSLKQLSHNPSFKYHPRCGKLKLVHICFADQFI 117
VM L++ L + + F YHP+C L L H+ FAD +
Sbjct: 188 VMDVLSKKLDRAAGLRKFGYHPKCKNLGLTHLSFADDIM 226
>gb|AAD15471.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1277
Score = 50.8 bits (120), Expect(3) = 8e-15
Identities = 23/66 (34%), Positives = 42/66 (63%)
Frame = +3
Query: 108 SIYLMLKAFNHFSVLSGLQANMEKSSLYMTGTTQVFRDQILEEMHFTLGKIPFKYLGVPL 287
S+ ++ F F+ SGL ++EKS+LY+ +++ R+ IL F G++P +YLG PL
Sbjct: 859 SVEGVINIFKDFAGKSGLHISLEKSTLYLAEVSELNRNNILSAFPFASGQLPVRYLGFPL 918
Query: 288 SSRKIT 305
++++T
Sbjct: 919 LTKQMT 924
Score = 38.1 bits (87), Expect(3) = 8e-15
Identities = 21/73 (28%), Positives = 36/73 (49%)
Frame = +2
Query: 284 LVIKKDYSATCMPLVDKMVARIRC*CTKFLYYSGRVQLIKSFLFEMQTY*GQIFLLTKKV 463
L+ K+ +A PL+DK+ ++I + L Y+GR+ LI S + + + + L
Sbjct: 918 LLTKQMTTADYSPLLDKVRSKISSWTARSLSYAGRLALINSVIVSLSNFWMSAYRLPAGC 977
Query: 464 INLATSICRTFLW 502
I +C FLW
Sbjct: 978 IKEIEKLCSAFLW 990
Score = 36.2 bits (82), Expect(3) = 8e-15
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 4 MQYLNRSLKQLSHNPSFKYHPRCGKLKLVHICFADQFI 117
M L+ + + + + YHP+C KL L H+CFAD +
Sbjct: 813 MNVLSHMIDVAAVHRNIGYHPKCKKLSLTHLCFADDLM 850
>dbj|BAB08270.1| non-LTR retroelement reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 489
Score = 50.1 bits (118), Expect(3) = 1e-14
Identities = 21/66 (31%), Positives = 42/66 (63%)
Frame = +3
Query: 108 SIYLMLKAFNHFSVLSGLQANMEKSSLYMTGTTQVFRDQILEEMHFTLGKIPFKYLGVPL 287
SI +++ F F+ SGL+ +MEKS++Y G + +++ F +G +P +YLG+PL
Sbjct: 99 SIEGIVEVFETFAKCSGLRISMEKSTVYFAGLSHTSPQEVMAHFPFAVGTLPVRYLGLPL 158
Query: 288 SSRKIT 305
+++++
Sbjct: 159 VTKQLS 164
Score = 40.4 bits (93), Expect(3) = 1e-14
Identities = 22/73 (30%), Positives = 38/73 (52%)
Frame = +2
Query: 284 LVIKKDYSATCMPLVDKMVARIRC*CTKFLYYSGRVQLIKSFLFEMQTY*GQIFLLTKKV 463
LV K+ S +PL++ + +I +FL Y+GR+ LI S L+ + + F L ++
Sbjct: 158 LVTKQLSSTDYLPLIEHIKKKIGSWSARFLSYAGRLNLISSVLWSICNFWMGAFRLPREC 217
Query: 464 INLATSICRTFLW 502
I +C +LW
Sbjct: 218 IREIDKMCSAYLW 230
Score = 34.3 bits (77), Expect(3) = 1e-14
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 4 MQYLNRSLKQLSHNPSFKYHPRCGKLKLVHICFADQFI 117
M L++ L + + F YHPRC ++ L H+ FAD +
Sbjct: 53 MNVLSKLLDKATGQRRFGYHPRCKQMGLTHLSFADDLM 90
>ref|XP_002331075.1| predicted protein [Populus trichocarpa]
Length = 517
Score = 54.7 bits (130), Expect(2) = 2e-14
Identities = 27/63 (42%), Positives = 39/63 (61%)
Frame = +2
Query: 314 CMPLVDKMVARIRC*CTKFLYYSGRVQLIKSFLFEMQTY*GQIFLLTKKVINLATSICRT 493
C LVD++ +++R + L Y+GRVQLI S LF +Q Y +FLL +VI I ++
Sbjct: 73 CKGLVDRITSKVRHWTCRTLSYAGRVQLINSVLFSIQVYWASLFLLPGQVIKNVEQIMKS 132
Query: 494 FLW 502
FLW
Sbjct: 133 FLW 135
Score = 49.7 bits (117), Expect(2) = 2e-14
Identities = 23/54 (42%), Positives = 34/54 (62%)
Frame = +3
Query: 141 FSVLSGLQANMEKSSLYMTGTTQVFRDQILEEMHFTLGKIPFKYLGVPLSSRKI 302
F LSGL N KS ++++G R+QI+ + F G++P KYLGVPL S ++
Sbjct: 15 FQDLSGLYPNPNKSDIFLSGVLNAEREQIIHILGFREGELPMKYLGVPLLSSRL 68
>ref|XP_006584200.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Glycine
max]
Length = 239
Score = 52.4 bits (124), Expect(3) = 3e-14
Identities = 27/69 (39%), Positives = 36/69 (52%)
Frame = +3
Query: 108 SIYLMLKAFNHFSVLSGLQANMEKSSLYMTGTTQVFRDQILEEMHFTLGKIPFKYLGVPL 287
S+ M HF +SGL N +KS++Y G I + F LG PF+YLGVPL
Sbjct: 40 SVSTMFAKLQHFCRVSGLSINSDKSAIYSAGIRPHELSHIQQLTGFNLGGFPFRYLGVPL 99
Query: 288 SSRKITVQH 314
S ++ V H
Sbjct: 100 LSSRLNVCH 108
Score = 36.2 bits (82), Expect(3) = 3e-14
Identities = 18/61 (29%), Positives = 36/61 (59%)
Frame = +2
Query: 320 PLVDKMVARIRC*CTKFLYYSGRVQLIKSFLFEMQTY*GQIFLLTKKVINLATSICRTFL 499
PL+ K+ I+ K L Y+G+++LI++ + + + +IF L++ V++ + C FL
Sbjct: 111 PLLSKITGLIQGWSRKSLSYAGKLELIRAVIQGIVNFWMKIFPLSQSVLDRINASCCNFL 170
Query: 500 W 502
W
Sbjct: 171 W 171
Score = 35.0 bits (79), Expect(3) = 3e-14
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 25 LKQLSHNPSFKYHPRCGKLKLVHICFADQFI*CSR 129
+ L + +FK+HP C ++L H+ FAD + SR
Sbjct: 1 MSNLKDDANFKFHPNCAGIQLFHLAFADDIMFLSR 35