BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atropa21_contig00041764
         (602 letters)

Database: nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004238386.1| PREDICTED: RNA pseudourine synthase 2, chlor...   327   2e-87
ref|XP_006342081.1| PREDICTED: RNA pseudouridine synthase 2, chl...   321   1e-85
ref|XP_002301949.1| pseudouridine synthase family protein [Popul...   263   3e-68
ref|XP_003634352.1| PREDICTED: RNA pseudourine synthase 2, chlor...   262   6e-68
ref|XP_002887624.1| T4O12.25 [Arabidopsis lyrata subsp. lyrata] ...   258   7e-67
ref|XP_006302277.1| hypothetical protein CARUB_v10020321mg [Caps...   255   6e-66
ref|XP_006435255.1| hypothetical protein CICLE_v10001736mg [Citr...   253   2e-65
ref|XP_006435254.1| hypothetical protein CICLE_v10001736mg [Citr...   253   2e-65
ref|XP_004161095.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudour...   253   2e-65
ref|XP_004143077.1| PREDICTED: RNA pseudourine synthase 2, chlor...   253   2e-65
ref|XP_006473714.1| PREDICTED: RNA pseudouridine synthase 2, chl...   253   3e-65
ref|NP_177732.2| RNA pseudourine synthase 2 [Arabidopsis thalian...   252   6e-65
ref|NP_974151.1| RNA pseudourine synthase 2 [Arabidopsis thalian...   252   6e-65
ref|XP_006390244.1| hypothetical protein EUTSA_v10018588mg [Eutr...   248   7e-64
ref|XP_002519370.1| ribosomal pseudouridine synthase, putative [...   248   7e-64
gb|EOY15126.1| Pseudouridine synthase family protein isoform 2, ...   244   2e-62
gb|EOY15125.1| Pseudouridine synthase family protein isoform 1 [...   244   2e-62
gb|ESW08114.1| hypothetical protein PHAVU_009G019500g [Phaseolus...   243   2e-62
gb|EXB81509.1| RNA pseudourine synthase 2 [Morus notabilis]           241   1e-61
ref|XP_003523282.1| PREDICTED: RNA pseudouridine synthase 2, chl...   239   4e-61

>ref|XP_004238386.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Solanum
           lycopersicum]
          Length = 436

 Score =  327 bits (838), Expect = 2e-87
 Identities = 170/210 (80%), Positives = 178/210 (84%), Gaps = 11/210 (5%)
 Frame = -3

Query: 597 SKFPGESDSDDLPGEITGRRYNYSGVKIEETVDVNTGKIRLDSWVSSRINGVSRARVQSS 418
           +KFPG+SDSDD P EI GRR NYSGVK+EETVD  TGK+RLDSWVSSRI+GVSRARVQSS
Sbjct: 33  TKFPGDSDSDDSPDEIPGRRSNYSGVKLEETVDSKTGKLRLDSWVSSRIDGVSRARVQSS 92

Query: 417 IRSGLVSVNGRVTDKVSHMVKGGDNVNCTIADLKPLRAEPEDIPLDIVYEDEHVLVVNKP 238
           IRSGLVSVNGRVTDKVSHMVKGGD V+CTIADLKPLRAEPEDIPLDIVYEDEHVLVVNKP
Sbjct: 93  IRSGLVSVNGRVTDKVSHMVKGGDKVDCTIADLKPLRAEPEDIPLDIVYEDEHVLVVNKP 152

Query: 237 AHMVVHPAPGNATGTLVSGILHHCSLPTVSFPGEXXXXXXXXXXXXXLNM---------- 88
           AHMVVHPAPGNATGTLVSGILHHCSLPTVSFPGE             LN+          
Sbjct: 153 AHMVVHPAPGNATGTLVSGILHHCSLPTVSFPGEEVLSDGEDASDDELNIFSPNRSPNYD 212

Query: 87  -SSIMYESSVRPGIVHRLDKGTSGLLVVAK 1
            SS+M ESSVRPGIVHRLDKGTSGLLVVAK
Sbjct: 213 DSSVMCESSVRPGIVHRLDKGTSGLLVVAK 242


>ref|XP_006342081.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like
           [Solanum tuberosum]
          Length = 431

 Score =  321 bits (822), Expect = 1e-85
 Identities = 167/210 (79%), Positives = 177/210 (84%), Gaps = 11/210 (5%)
 Frame = -3

Query: 597 SKFPGESDSDDLPGEITGRRYNYSGVKIEETVDVNTGKIRLDSWVSSRINGVSRARVQSS 418
           +KFPG+SDSDD P EI GRR NYSGVK+EETVD  TGK+RLDSWVSSRI+GVSRARVQSS
Sbjct: 33  TKFPGDSDSDDSPDEIPGRRSNYSGVKLEETVDGKTGKLRLDSWVSSRIDGVSRARVQSS 92

Query: 417 IRSGLVSVNGRVTDKVSHMVKGGDNVNCTIADLKPLRAEPEDIPLDIVYEDEHVLVVNKP 238
           IRSGLVSVNGRVTDKVSHMVKGGD V+CTIADLKPLRAEPEDIPLDIV+EDEHVLVVNKP
Sbjct: 93  IRSGLVSVNGRVTDKVSHMVKGGDKVDCTIADLKPLRAEPEDIPLDIVFEDEHVLVVNKP 152

Query: 237 AHMVVHPAPGNATGTLVSGILHHCSLPTVSFPGEXXXXXXXXXXXXXLNM---------- 88
           AHMVVHPAPGNATGTLVSGILHHCSLPT+SF GE             LN+          
Sbjct: 153 AHMVVHPAPGNATGTLVSGILHHCSLPTISFLGEEVLSDAEDASDDELNVFSGNRSPNYD 212

Query: 87  -SSIMYESSVRPGIVHRLDKGTSGLLVVAK 1
            SS+M ESSVRPGIVHRLDKGTSGLLVVAK
Sbjct: 213 DSSVMCESSVRPGIVHRLDKGTSGLLVVAK 242


>ref|XP_002301949.1| pseudouridine synthase family protein [Populus trichocarpa]
           gi|222843675|gb|EEE81222.1| pseudouridine synthase
           family protein [Populus trichocarpa]
          Length = 444

 Score =  263 bits (672), Expect = 3e-68
 Identities = 134/182 (73%), Positives = 151/182 (82%)
 Frame = -3

Query: 546 GRRYNYSGVKIEETVDVNTGKIRLDSWVSSRINGVSRARVQSSIRSGLVSVNGRVTDKVS 367
           G+R NYSGVK+EE+VD  +GK RLDSW+SSRI+G+SRARVQSSI+SGLVSVNG+V DKVS
Sbjct: 73  GQRINYSGVKLEESVDSKSGKSRLDSWISSRISGISRARVQSSIKSGLVSVNGKVIDKVS 132

Query: 366 HMVKGGDNVNCTIADLKPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLV 187
           H VK GD VNC I++L+PLRAEPE+IPLDIVYEDE+VLVVNKPAHMVVHPAPGNATGTLV
Sbjct: 133 HNVKAGDKVNCVISELQPLRAEPENIPLDIVYEDENVLVVNKPAHMVVHPAPGNATGTLV 192

Query: 186 SGILHHCSLPTVSFPGEXXXXXXXXXXXXXLNMSSIMYESSVRPGIVHRLDKGTSGLLVV 7
           +GILHHCSLPTVS   E               + S  Y +SVRPGIVHRLDKGTSGLLVV
Sbjct: 193 NGILHHCSLPTVS-SQEVLSGAEDVSDDDDEGLCSSSYAASVRPGIVHRLDKGTSGLLVV 251

Query: 6   AK 1
           AK
Sbjct: 252 AK 253


>ref|XP_003634352.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Vitis
           vinifera] gi|302141717|emb|CBI18920.3| unnamed protein
           product [Vitis vinifera]
          Length = 433

 Score =  262 bits (669), Expect = 6e-68
 Identities = 137/200 (68%), Positives = 161/200 (80%), Gaps = 7/200 (3%)
 Frame = -3

Query: 579 SDSDDLP-GEITGRRYNYSGVKIEETV-DVNT--GKIRLDSWVSSRINGVSRARVQSSIR 412
           S+S D P   ++GRR NY+GV++EETV DVN+  GK+RLDSW+SSRI G+SRARVQSSIR
Sbjct: 41  SNSTDEPLVSVSGRRTNYAGVRLEETVVDVNSDSGKLRLDSWISSRIIGISRARVQSSIR 100

Query: 411 SGLVSVNGRVTDKVSHMVKGGDNVNCTIADLKPLRAEPEDIPLDIVYEDEHVLVVNKPAH 232
           SGLVSVN R+ DKVSH+++ GD VNCTI++L+PLRAEPEDIPLDIVYEDEHVLVVNKPAH
Sbjct: 101 SGLVSVNDRIVDKVSHVIRAGDKVNCTISELQPLRAEPEDIPLDIVYEDEHVLVVNKPAH 160

Query: 231 MVVHPAPGNATGTLVSGILHHCSLPTVSFP---GEXXXXXXXXXXXXXLNMSSIMYESSV 61
           MVVHPAPGNA+GTLV+GILHHCSLPTV+ P    E                +    E+++
Sbjct: 161 MVVHPAPGNASGTLVNGILHHCSLPTVALPNRDSEEDDISDDEFNSFAAGQNCGTCETNI 220

Query: 60  RPGIVHRLDKGTSGLLVVAK 1
           RPGIVHRLDKGTSGLLVVAK
Sbjct: 221 RPGIVHRLDKGTSGLLVVAK 240


>ref|XP_002887624.1| T4O12.25 [Arabidopsis lyrata subsp. lyrata]
            gi|297333465|gb|EFH63883.1| T4O12.25 [Arabidopsis lyrata
            subsp. lyrata]
          Length = 930

 Score =  258 bits (660), Expect = 7e-67
 Identities = 134/189 (70%), Positives = 149/189 (78%), Gaps = 2/189 (1%)
 Frame = -3

Query: 561  PGEITGRRYNYSGVKIEETVDVNTGKIRLDSWVSSRINGVSRARVQSSIRSGLVSVNGRV 382
            P EI   R N +G++IEETVD   GKIRLDSW+SSR+NGVSRARVQSSIR GLV+VNGRV
Sbjct: 558  PTEIIIPRVNNAGLRIEETVDALKGKIRLDSWISSRVNGVSRARVQSSIRLGLVTVNGRV 617

Query: 381  TDKVSHMVKGGDNVNCTIADLKPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNA 202
             DKVSH VK GD VNCTI++L+PL+AE EDIPLDIVYED+HVLVVNKPAHMVVHPAPGN 
Sbjct: 618  VDKVSHNVKAGDEVNCTISELQPLKAEAEDIPLDIVYEDKHVLVVNKPAHMVVHPAPGNP 677

Query: 201  TGTLVSGILHHCSLPTVSFPGEXXXXXXXXXXXXXLNM--SSIMYESSVRPGIVHRLDKG 28
            TGTLV+GILHHCSLP VS+                  M  SS  Y +SVRPGIVHRLDKG
Sbjct: 678  TGTLVNGILHHCSLPCVSYSNAEDDDSDEETFSDDEEMTTSSSSYAASVRPGIVHRLDKG 737

Query: 27   TSGLLVVAK 1
            T+GLLVVAK
Sbjct: 738  TTGLLVVAK 746


>ref|XP_006302277.1| hypothetical protein CARUB_v10020321mg [Capsella rubella]
           gi|482570987|gb|EOA35175.1| hypothetical protein
           CARUB_v10020321mg [Capsella rubella]
          Length = 432

 Score =  255 bits (652), Expect = 6e-66
 Identities = 133/188 (70%), Positives = 149/188 (79%), Gaps = 1/188 (0%)
 Frame = -3

Query: 561 PGEITGRRYNYSGVKIEETVDVNTGKIRLDSWVSSRINGVSRARVQSSIRSGLVSVNGRV 382
           P E    R N +G++IEETVD   GKIRLDSW+SSRINGVSRARVQSSIR GLV+VNGRV
Sbjct: 56  PTESILPRVNNAGLRIEETVDDLKGKIRLDSWISSRINGVSRARVQSSIRLGLVTVNGRV 115

Query: 381 TDKVSHMVKGGDNVNCTIADLKPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNA 202
            DKVSH VK GD VNCTI++L+PL+AE EDIPLDIVYED+HVLVVNKPAHMVVHPAPGN 
Sbjct: 116 VDKVSHNVKAGDEVNCTISELQPLKAEAEDIPLDIVYEDKHVLVVNKPAHMVVHPAPGNP 175

Query: 201 TGTLVSGILHHCSLPTVSFPGEXXXXXXXXXXXXXLNM-SSIMYESSVRPGIVHRLDKGT 25
           TGTLV+GILHHCSLP+V++                  M SS  Y +SVRPGIVHRLDKGT
Sbjct: 176 TGTLVNGILHHCSLPSVAYSSPEDDDSDDESFSDGEEMTSSSSYAASVRPGIVHRLDKGT 235

Query: 24  SGLLVVAK 1
           +GLLVVAK
Sbjct: 236 TGLLVVAK 243


>ref|XP_006435255.1| hypothetical protein CICLE_v10001736mg [Citrus clementina]
           gi|557537377|gb|ESR48495.1| hypothetical protein
           CICLE_v10001736mg [Citrus clementina]
          Length = 341

 Score =  253 bits (647), Expect = 2e-65
 Identities = 128/178 (71%), Positives = 148/178 (83%)
 Frame = -3

Query: 534 NYSGVKIEETVDVNTGKIRLDSWVSSRINGVSRARVQSSIRSGLVSVNGRVTDKVSHMVK 355
           NY+GV++EETVD   GK+RLD+W+SSRI+G+SRARVQSSIRSGLVSVNG+V  KVSH VK
Sbjct: 54  NYAGVQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSVNGQVVSKVSHNVK 113

Query: 354 GGDNVNCTIADLKPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVSGIL 175
           GGD VNCTI++L+PLRAE EDIPLDIVYED++VLVVNKPAHMVVHPAPGNATGTLV+GIL
Sbjct: 114 GGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGIL 173

Query: 174 HHCSLPTVSFPGEXXXXXXXXXXXXXLNMSSIMYESSVRPGIVHRLDKGTSGLLVVAK 1
           HHCSLPT++   +                SSI   +S+RPGIVHRLDKGTSGLLVVAK
Sbjct: 174 HHCSLPTLASSNQEAFSDAEDISDDEEFSSSIS-GASIRPGIVHRLDKGTSGLLVVAK 230


>ref|XP_006435254.1| hypothetical protein CICLE_v10001736mg [Citrus clementina]
           gi|557537376|gb|ESR48494.1| hypothetical protein
           CICLE_v10001736mg [Citrus clementina]
          Length = 324

 Score =  253 bits (647), Expect = 2e-65
 Identities = 128/178 (71%), Positives = 148/178 (83%)
 Frame = -3

Query: 534 NYSGVKIEETVDVNTGKIRLDSWVSSRINGVSRARVQSSIRSGLVSVNGRVTDKVSHMVK 355
           NY+GV++EETVD   GK+RLD+W+SSRI+G+SRARVQSSIRSGLVSVNG+V  KVSH VK
Sbjct: 54  NYAGVQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSVNGQVVSKVSHNVK 113

Query: 354 GGDNVNCTIADLKPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVSGIL 175
           GGD VNCTI++L+PLRAE EDIPLDIVYED++VLVVNKPAHMVVHPAPGNATGTLV+GIL
Sbjct: 114 GGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGIL 173

Query: 174 HHCSLPTVSFPGEXXXXXXXXXXXXXLNMSSIMYESSVRPGIVHRLDKGTSGLLVVAK 1
           HHCSLPT++   +                SSI   +S+RPGIVHRLDKGTSGLLVVAK
Sbjct: 174 HHCSLPTLASSNQEAFSDAEDISDDEEFSSSIS-GASIRPGIVHRLDKGTSGLLVVAK 230


>ref|XP_004161095.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudourine synthase 2,
           chloroplastic-like [Cucumis sativus]
          Length = 452

 Score =  253 bits (647), Expect = 2e-65
 Identities = 132/195 (67%), Positives = 152/195 (77%), Gaps = 2/195 (1%)
 Frame = -3

Query: 579 SDSDDLPGEITGRRYNYSGVKIEETVDVNTGKIRLDSWVSSRINGVSRARVQSSIRSGLV 400
           SD D+     + R  NY+G ++EETVDVN GK+RLDSW+S RING+SRARVQSSIR+GLV
Sbjct: 45  SDYDEYSEAQSERIANYAGTRLEETVDVNPGKVRLDSWISCRINGISRARVQSSIRAGLV 104

Query: 399 SVNGRVTDKVSHMVKGGDNVNCTIADLKPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVH 220
           SVNGRV DKVSH VK GD +NCTI++L+PLRAEPEDI LDIVYEDEHVLVVNKPAHMVVH
Sbjct: 105 SVNGRVIDKVSHNVKAGDVINCTISELQPLRAEPEDIDLDIVYEDEHVLVVNKPAHMVVH 164

Query: 219 PAPGNATGTLVSGILHHCSLPTV--SFPGEXXXXXXXXXXXXXLNMSSIMYESSVRPGIV 46
           PAPGNATGTLV+ IL+HCSLP V  S                 + + S + E+ +RPGIV
Sbjct: 165 PAPGNATGTLVNAILNHCSLPMVATSTGENESDSDVSDDEFSSIGVFSRVSEAPIRPGIV 224

Query: 45  HRLDKGTSGLLVVAK 1
           HRLDKGTSGLLVVAK
Sbjct: 225 HRLDKGTSGLLVVAK 239


>ref|XP_004143077.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Cucumis
           sativus]
          Length = 453

 Score =  253 bits (647), Expect = 2e-65
 Identities = 132/195 (67%), Positives = 152/195 (77%), Gaps = 2/195 (1%)
 Frame = -3

Query: 579 SDSDDLPGEITGRRYNYSGVKIEETVDVNTGKIRLDSWVSSRINGVSRARVQSSIRSGLV 400
           SD D+     + R  NY+G ++EETVDVN GK+RLDSW+S RING+SRARVQSSIR+GLV
Sbjct: 45  SDYDEYSEAQSERIANYAGTRLEETVDVNPGKVRLDSWISCRINGISRARVQSSIRAGLV 104

Query: 399 SVNGRVTDKVSHMVKGGDNVNCTIADLKPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVH 220
           SVNGRV DKVSH VK GD +NCTI++L+PLRAEPEDI LDIVYEDEHVLVVNKPAHMVVH
Sbjct: 105 SVNGRVIDKVSHNVKAGDVINCTISELQPLRAEPEDIDLDIVYEDEHVLVVNKPAHMVVH 164

Query: 219 PAPGNATGTLVSGILHHCSLPTV--SFPGEXXXXXXXXXXXXXLNMSSIMYESSVRPGIV 46
           PAPGNATGTLV+ IL+HCSLP V  S                 + + S + E+ +RPGIV
Sbjct: 165 PAPGNATGTLVNAILNHCSLPMVATSTGENESDSDVSDDEFSSIGVFSRVSEAPIRPGIV 224

Query: 45  HRLDKGTSGLLVVAK 1
           HRLDKGTSGLLVVAK
Sbjct: 225 HRLDKGTSGLLVVAK 239


>ref|XP_006473714.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like [Citrus
           sinensis]
          Length = 421

 Score =  253 bits (646), Expect = 3e-65
 Identities = 127/178 (71%), Positives = 148/178 (83%)
 Frame = -3

Query: 534 NYSGVKIEETVDVNTGKIRLDSWVSSRINGVSRARVQSSIRSGLVSVNGRVTDKVSHMVK 355
           NY+GV++EETVD   GK+RLD+W+SSRI+G+SRARVQSSIRSGLVS+NG+V  KVSH VK
Sbjct: 54  NYAGVQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVK 113

Query: 354 GGDNVNCTIADLKPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVSGIL 175
           GGD VNCTI++L+PLRAE EDIPLDIVYED++VLVVNKPAHMVVHPAPGNATGTLV+GIL
Sbjct: 114 GGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGIL 173

Query: 174 HHCSLPTVSFPGEXXXXXXXXXXXXXLNMSSIMYESSVRPGIVHRLDKGTSGLLVVAK 1
           HHCSLPT++   +                SSI   +S+RPGIVHRLDKGTSGLLVVAK
Sbjct: 174 HHCSLPTLASSNQEAFSDAEDISDDEEFSSSIS-GASIRPGIVHRLDKGTSGLLVVAK 230


>ref|NP_177732.2| RNA pseudourine synthase 2 [Arabidopsis thaliana]
           gi|332197668|gb|AEE35789.1| RNA pseudourine synthase 2
           [Arabidopsis thaliana]
          Length = 313

 Score =  252 bits (643), Expect = 6e-65
 Identities = 131/190 (68%), Positives = 147/190 (77%), Gaps = 3/190 (1%)
 Frame = -3

Query: 561 PGEITGRRYNYSGVKIEETVDVNTGKIRLDSWVSSRINGVSRARVQSSIRSGLVSVNGRV 382
           P EI   R N +G++IEE VD   GKIRLDSW+SSRINGVSRARVQSSIR GLV+VNGRV
Sbjct: 56  PTEIIIPRVNNAGLRIEEIVDAAKGKIRLDSWISSRINGVSRARVQSSIRLGLVTVNGRV 115

Query: 381 TDKVSHMVKGGDNVNCTIADLKPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNA 202
            DKVSH VK GD VNCTI++L+PL+AE EDIPLDIVYED+HVLVVNKPAHMVVHPAPGN 
Sbjct: 116 VDKVSHNVKSGDEVNCTISELQPLKAEAEDIPLDIVYEDKHVLVVNKPAHMVVHPAPGNP 175

Query: 201 TGTLVSGILHHCSLPTVSFPG---EXXXXXXXXXXXXXLNMSSIMYESSVRPGIVHRLDK 31
           TGTLV+GILHHCSLP V +     +             +  S   Y +SVRPGIVHRLDK
Sbjct: 176 TGTLVNGILHHCSLPCVDYSNSEEDDDSDEETFSDDEEMTTSPSSYAASVRPGIVHRLDK 235

Query: 30  GTSGLLVVAK 1
           GT+GLLVVAK
Sbjct: 236 GTTGLLVVAK 245


>ref|NP_974151.1| RNA pseudourine synthase 2 [Arabidopsis thaliana]
           gi|122215273|sp|Q3ECD0.1|PUS2_ARATH RecName: Full=RNA
           pseudouridine synthase 2, chloroplastic; AltName:
           Full=RNA pseudouridylate synthase 2; AltName:
           Full=RNA-uridine isomerase 2; Flags: Precursor
           gi|332197669|gb|AEE35790.1| RNA pseudourine synthase 2
           [Arabidopsis thaliana]
          Length = 430

 Score =  252 bits (643), Expect = 6e-65
 Identities = 131/190 (68%), Positives = 147/190 (77%), Gaps = 3/190 (1%)
 Frame = -3

Query: 561 PGEITGRRYNYSGVKIEETVDVNTGKIRLDSWVSSRINGVSRARVQSSIRSGLVSVNGRV 382
           P EI   R N +G++IEE VD   GKIRLDSW+SSRINGVSRARVQSSIR GLV+VNGRV
Sbjct: 56  PTEIIIPRVNNAGLRIEEIVDAAKGKIRLDSWISSRINGVSRARVQSSIRLGLVTVNGRV 115

Query: 381 TDKVSHMVKGGDNVNCTIADLKPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNA 202
            DKVSH VK GD VNCTI++L+PL+AE EDIPLDIVYED+HVLVVNKPAHMVVHPAPGN 
Sbjct: 116 VDKVSHNVKSGDEVNCTISELQPLKAEAEDIPLDIVYEDKHVLVVNKPAHMVVHPAPGNP 175

Query: 201 TGTLVSGILHHCSLPTVSFPG---EXXXXXXXXXXXXXLNMSSIMYESSVRPGIVHRLDK 31
           TGTLV+GILHHCSLP V +     +             +  S   Y +SVRPGIVHRLDK
Sbjct: 176 TGTLVNGILHHCSLPCVDYSNSEEDDDSDEETFSDDEEMTTSPSSYAASVRPGIVHRLDK 235

Query: 30  GTSGLLVVAK 1
           GT+GLLVVAK
Sbjct: 236 GTTGLLVVAK 245


>ref|XP_006390244.1| hypothetical protein EUTSA_v10018588mg [Eutrema salsugineum]
           gi|557086678|gb|ESQ27530.1| hypothetical protein
           EUTSA_v10018588mg [Eutrema salsugineum]
          Length = 432

 Score =  248 bits (634), Expect = 7e-64
 Identities = 127/181 (70%), Positives = 144/181 (79%), Gaps = 1/181 (0%)
 Frame = -3

Query: 540 RYNYSGVKIEETVDVNT-GKIRLDSWVSSRINGVSRARVQSSIRSGLVSVNGRVTDKVSH 364
           R N +G+K+EETV+     KIRLDSW+SSR++GVSRARVQSSIR GLVSVNGRV DKVSH
Sbjct: 63  RVNNAGLKLEETVEAAVKAKIRLDSWISSRVHGVSRARVQSSIRLGLVSVNGRVVDKVSH 122

Query: 363 MVKGGDNVNCTIADLKPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVS 184
            VK GD VNCTI++L+PL+AEPEDIPLDIVYED+H+LVVNKPAHMVVHPAPGN TGTLV+
Sbjct: 123 NVKAGDEVNCTISELQPLKAEPEDIPLDIVYEDKHLLVVNKPAHMVVHPAPGNPTGTLVN 182

Query: 183 GILHHCSLPTVSFPGEXXXXXXXXXXXXXLNMSSIMYESSVRPGIVHRLDKGTSGLLVVA 4
           GILHHCSLP V++                   SS    +SVRPGIVHRLDKGTSGLLVVA
Sbjct: 183 GILHHCSLPCVAYSNPEDDSDEETLSDDEEMTSSSSLAASVRPGIVHRLDKGTSGLLVVA 242

Query: 3   K 1
           K
Sbjct: 243 K 243


>ref|XP_002519370.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
           gi|223541437|gb|EEF42987.1| ribosomal pseudouridine
           synthase, putative [Ricinus communis]
          Length = 399

 Score =  248 bits (634), Expect = 7e-64
 Identities = 125/181 (69%), Positives = 144/181 (79%), Gaps = 3/181 (1%)
 Frame = -3

Query: 534 NYSGVKIEETVDV---NTGKIRLDSWVSSRINGVSRARVQSSIRSGLVSVNGRVTDKVSH 364
           NY G+++EETV V    + K+RLDSW+SSRI+G+SRARVQSSI+SGLVSVNGRV DKVSH
Sbjct: 52  NYGGIRLEETVQVVHAKSVKLRLDSWISSRISGISRARVQSSIKSGLVSVNGRVVDKVSH 111

Query: 363 MVKGGDNVNCTIADLKPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVS 184
            VK GD V CTI++L+PLRAEPED+PLDIVYEDEH+LVVNKP HMVVHPAPGN TGTLV+
Sbjct: 112 NVKFGDKVTCTISELQPLRAEPEDMPLDIVYEDEHLLVVNKPPHMVVHPAPGNPTGTLVN 171

Query: 183 GILHHCSLPTVSFPGEXXXXXXXXXXXXXLNMSSIMYESSVRPGIVHRLDKGTSGLLVVA 4
           GILHHC+LPTV+   +                 S   ESS+RPGIVHRLDKGTSGLLVVA
Sbjct: 172 GILHHCNLPTVAISSQEVLSDAEDRSDDDERSYSSSCESSIRPGIVHRLDKGTSGLLVVA 231

Query: 3   K 1
           K
Sbjct: 232 K 232


>gb|EOY15126.1| Pseudouridine synthase family protein isoform 2, partial [Theobroma
           cacao]
          Length = 409

 Score =  244 bits (622), Expect = 2e-62
 Identities = 125/182 (68%), Positives = 144/182 (79%), Gaps = 2/182 (1%)
 Frame = -3

Query: 540 RYNYSGVKIEETVD-VNTGKIRLDSWVSSRINGVSRARVQSSIRSGLVSVNGRVTDKVSH 364
           R +Y+GV++EETVD    GK+RLDSW+SSRI G+SRARVQSSI+SGLV+VNGRV DKVSH
Sbjct: 47  RTSYTGVQLEETVDGTKQGKLRLDSWISSRIQGISRARVQSSIKSGLVTVNGRVVDKVSH 106

Query: 363 MVKGGDNVNCTIADLKPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVS 184
            ++ GD VNC I++L+PLRAEPEDIPLDIVYED+HVLVVNKP HMVVHPAPGNATGTLV+
Sbjct: 107 GLRHGDKVNCVISELQPLRAEPEDIPLDIVYEDDHVLVVNKPPHMVVHPAPGNATGTLVN 166

Query: 183 GILHHCSLPTVSFPGEXXXXXXXXXXXXXLNMS-SIMYESSVRPGIVHRLDKGTSGLLVV 7
           GILHHCSLPTV+   +                       +SVRPGIVHRLDKGTSGLLVV
Sbjct: 167 GILHHCSLPTVALSEKEVLSDTEDVSDDDEGFCYGASAAASVRPGIVHRLDKGTSGLLVV 226

Query: 6   AK 1
           AK
Sbjct: 227 AK 228


>gb|EOY15125.1| Pseudouridine synthase family protein isoform 1 [Theobroma cacao]
          Length = 433

 Score =  244 bits (622), Expect = 2e-62
 Identities = 125/182 (68%), Positives = 144/182 (79%), Gaps = 2/182 (1%)
 Frame = -3

Query: 540 RYNYSGVKIEETVD-VNTGKIRLDSWVSSRINGVSRARVQSSIRSGLVSVNGRVTDKVSH 364
           R +Y+GV++EETVD    GK+RLDSW+SSRI G+SRARVQSSI+SGLV+VNGRV DKVSH
Sbjct: 60  RTSYTGVQLEETVDGTKQGKLRLDSWISSRIQGISRARVQSSIKSGLVTVNGRVVDKVSH 119

Query: 363 MVKGGDNVNCTIADLKPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVS 184
            ++ GD VNC I++L+PLRAEPEDIPLDIVYED+HVLVVNKP HMVVHPAPGNATGTLV+
Sbjct: 120 GLRHGDKVNCVISELQPLRAEPEDIPLDIVYEDDHVLVVNKPPHMVVHPAPGNATGTLVN 179

Query: 183 GILHHCSLPTVSFPGEXXXXXXXXXXXXXLNMS-SIMYESSVRPGIVHRLDKGTSGLLVV 7
           GILHHCSLPTV+   +                       +SVRPGIVHRLDKGTSGLLVV
Sbjct: 180 GILHHCSLPTVALSEKEVLSDTEDVSDDDEGFCYGASAAASVRPGIVHRLDKGTSGLLVV 239

Query: 6   AK 1
           AK
Sbjct: 240 AK 241


>gb|ESW08114.1| hypothetical protein PHAVU_009G019500g [Phaseolus vulgaris]
          Length = 447

 Score =  243 bits (621), Expect = 2e-62
 Identities = 130/211 (61%), Positives = 153/211 (72%), Gaps = 12/211 (5%)
 Frame = -3

Query: 597 SKFPGESDSDDLPGEITGRRYNYSGVKIEETVD--VNTGKIRLDSWVSSRINGVSRARVQ 424
           S F G+SDSD   GE   R+ N+SG+++EE VD  + + K+RLDSW+SSRING+SRARVQ
Sbjct: 47  SGFTGDSDSD---GE---RKLNFSGLRLEEAVDSRIGSAKLRLDSWISSRINGISRARVQ 100

Query: 423 SSIRSGLVSVNGRVTDKVSHMVKGGDNVNCTIADLKPLRAEPEDIPLDIVYEDEHVLVVN 244
           SSI+SGLV VNGRV DK S  VK GD + CTIA+L+ LRA PE+IPLDIVYEDEHVLV+N
Sbjct: 101 SSIKSGLVHVNGRVVDKASFNVKAGDQIKCTIAELQKLRAVPENIPLDIVYEDEHVLVIN 160

Query: 243 KPAHMVVHPAPGNATGTLVSGILHHCSLPTVSFPGEXXXXXXXXXXXXXLNMSSIMYE-- 70
           KPAHMVVHPAPGN +GTLV+GILHHC+LP V F  E              +  S+     
Sbjct: 161 KPAHMVVHPAPGNTSGTLVNGILHHCNLPNVEFSKEEGLSDTEDCDDEVNSYGSLASSCE 220

Query: 69  --------SSVRPGIVHRLDKGTSGLLVVAK 1
                   SS+RPGIVHRLDKGTSGLLVVAK
Sbjct: 221 GSHSRPSMSSIRPGIVHRLDKGTSGLLVVAK 251


>gb|EXB81509.1| RNA pseudourine synthase 2 [Morus notabilis]
          Length = 369

 Score =  241 bits (615), Expect = 1e-61
 Identities = 124/202 (61%), Positives = 155/202 (76%), Gaps = 3/202 (1%)
 Frame = -3

Query: 597 SKFPGESDSDDLPGEITGRRYNYSGVKIEETVDVNTGKIRLDSWVSSRINGVSRARVQSS 418
           S F G S SD     + G R N++GV++E TV V++GK+RLDSW+SSR++G+SRARVQSS
Sbjct: 53  SSFTGASISDRNEEVLAGVRPNFAGVRLEATVAVDSGKVRLDSWISSRVSGISRARVQSS 112

Query: 417 IRSGLVSVNGRVTDKVSHMVKGGDNVNCTIADLKPLRAEPEDIPLDIVYEDEHVLVVNKP 238
           IR GLV VNG+V DKVS  VK GD ++CTI++L+PL+AE EDIPL+IV+ED+ VLVVNKP
Sbjct: 113 IRLGLVRVNGQVVDKVSQNVKTGDKIDCTISELQPLKAEAEDIPLEIVHEDDSVLVVNKP 172

Query: 237 AHMVVHPAPGNATGTLVSGILHHCSLPTVSFPGE---XXXXXXXXXXXXXLNMSSIMYES 67
            HMVVHPAPGNA GTLV+GILHHCSLPT++F  +                ++M + +  +
Sbjct: 173 PHMVVHPAPGNAKGTLVNGILHHCSLPTIAFSHQESLSDDEDTCDDEFRGMSMDASISGA 232

Query: 66  SVRPGIVHRLDKGTSGLLVVAK 1
           SVRPGIVHRLDKGTSGLLVVAK
Sbjct: 233 SVRPGIVHRLDKGTSGLLVVAK 254


>ref|XP_003523282.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like isoform
           X1 [Glycine max] gi|571448797|ref|XP_006577958.1|
           PREDICTED: RNA pseudouridine synthase 2,
           chloroplastic-like isoform X2 [Glycine max]
          Length = 450

 Score =  239 bits (610), Expect = 4e-61
 Identities = 127/209 (60%), Positives = 151/209 (72%), Gaps = 14/209 (6%)
 Frame = -3

Query: 585 GESDSDDLPGEITGRRYNYSGVKIEETVD--VNTGKIRLDSWVSSRINGVSRARVQSSIR 412
           G+SDSD  P      + N+SGV++EE VD  + +GK+RLD+W+SSRING+SRARVQSSI+
Sbjct: 52  GDSDSDGEP------KLNFSGVRLEEAVDSRIGSGKLRLDNWISSRINGISRARVQSSIK 105

Query: 411 SGLVSVNGRVTDKVSHMVKGGDNVNCTIADLKPLRAEPEDIPLDIVYEDEHVLVVNKPAH 232
           SGLV VNGRV DKVS  VK GD + CTIA+L+ LRA P++IPLDIVYEDEHVLV+NKPAH
Sbjct: 106 SGLVHVNGRVVDKVSFNVKSGDEIKCTIAELQNLRAVPQNIPLDIVYEDEHVLVINKPAH 165

Query: 231 MVVHPAPGNATGTLVSGILHHCSLPTVSF------------PGEXXXXXXXXXXXXXLNM 88
           MVVHPAPGN +GTLV+GILHHC+LP V F              E             LN 
Sbjct: 166 MVVHPAPGNTSGTLVNGILHHCNLPNVEFSKDEALSDTEDSDDEFNSYISLASSCEGLNS 225

Query: 87  SSIMYESSVRPGIVHRLDKGTSGLLVVAK 1
              +  +S+RPGIVHRLDKGTSGLLVVAK
Sbjct: 226 RLSVASNSIRPGIVHRLDKGTSGLLVVAK 254