BLASTX nr result
ID: Atropa21_contig00040125
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Atropa21_contig00040125
(480 letters)
Database: nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006362709.1| PREDICTED: putative ribonuclease H protein A... 60 9e-14
ref|XP_006365287.1| PREDICTED: uncharacterized protein LOC102597... 50 3e-11
ref|XP_006337991.1| PREDICTED: putative ribonuclease H protein A... 49 5e-09
ref|XP_006347119.1| PREDICTED: putative ribonuclease H protein A... 49 5e-09
ref|XP_006354966.1| PREDICTED: putative ribonuclease H protein A... 44 2e-07
ref|XP_006355601.1| PREDICTED: putative ribonuclease H protein A... 45 5e-07
ref|XP_006352964.1| PREDICTED: putative ribonuclease H protein A... 45 5e-07
ref|XP_006353602.1| PREDICTED: putative ribonuclease H protein A... 47 1e-06
ref|XP_006345709.1| PREDICTED: putative ribonuclease H protein A... 45 2e-06
ref|XP_006345710.1| PREDICTED: putative ribonuclease H protein A... 44 6e-06
>ref|XP_006362709.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
tuberosum]
Length = 217
Score = 60.5 bits (145), Expect(2) = 9e-14
Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Frame = +2
Query: 2 WLASKGGSYPVKATILQ*NQSSNQETNWPWKMLWRTKAAPNELALNGKKQKRLV*LK*HY 181
W +GG + VK+ + + Q WPW+M+WRT+ K+ V +
Sbjct: 26 WKGERGGEFTVKSAYRELRSTEEQHAGWPWRMIWRTEIPYKVNYFTWLLAKQAVLTHENL 85
Query: 182 REEVTQSAVSIFFCEDSLETRNHL-LNCKFTCQIW 283
+ S + CE+ +ET NHL L+CK+T Q+W
Sbjct: 86 NKRKPNLRSSCYLCEEQVETVNHLFLHCKWTDQLW 120
Score = 41.6 bits (96), Expect(2) = 9e-14
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Frame = +3
Query: 372 KQTWKTIPLCI---IWLERNNRCYEGRIQHLSFVKYRCL 479
++ W+ +P CI IW ERN RC+EG+ ++ +K CL
Sbjct: 154 EKRWRIVPACIWWTIWKERNQRCFEGKQNNIQKIKTNCL 192
>ref|XP_006365287.1| PREDICTED: uncharacterized protein LOC102597191 [Solanum tuberosum]
Length = 305
Score = 49.7 bits (117), Expect(2) = 3e-11
Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Frame = +3
Query: 339 SWQGQRIEKITKQTWKTIPLCI---IWLERNNRCYEGRIQHLSFVKYRC 476
SW +++K K+ W IP CI IWLERN RC++G L +K RC
Sbjct: 228 SWSLWKVDKAIKKIWIMIPACIFWSIWLERNKRCFDGESTALGILKTRC 276
Score = 43.9 bits (102), Expect(2) = 3e-11
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
Frame = +2
Query: 20 GSYPVKATILQ*NQSSNQETNWPWKMLWRTKAAPNELALNGKKQKRLV*LK*HYREEVTQ 199
G Y VK Q + NWPWK++WRTK P + + + ++ Q
Sbjct: 117 GVYTVKEGYQQLCSRNPVIANWPWKLIWRTKLPPKVVFFTWIALYEACLTQDNIKKRKIQ 176
Query: 200 SAVSIFFCEDSLETRNH-LLNCKFTCQIWP-FSCI 298
+ C+ ET H LL+C+ ++W F C+
Sbjct: 177 FPNRCYMCKKEAETPRHLLLHCEVASELWSMFFCL 211
>ref|XP_006337991.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
tuberosum]
Length = 556
Score = 48.9 bits (115), Expect(2) = 5e-09
Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 1/106 (0%)
Frame = +2
Query: 2 WLASKGGSYPVKATILQ*NQSSNQETNWPWKMLWRTKAAPNELALNGKKQKRLV*LK*HY 181
W + G + V + ++SS Q WPWK +W+ + K + +
Sbjct: 365 WKGNNRGEFKVHSAYRLMDESSQQSPIWPWKQVWKCRIPHKVSCFIWLLAKEAALTQDNV 424
Query: 182 REEVTQSAVSIFFCEDSLETRNHL-LNCKFTCQIWPFSCIFLEFFG 316
+ F C ++LET NHL L+CK+T Q+W IFL G
Sbjct: 425 MKRGITLCSRCFLCGETLETVNHLFLHCKYTRQLWR---IFLSLKG 467
Score = 37.0 bits (84), Expect(2) = 5e-09
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Frame = +3
Query: 303 WSFLANAPRCETSWQGQRIEKITKQTWKTIPLCI---IWLERNNRCYEGRIQHLSFVKYR 473
W+ SW+ + W+ IP I IW ERN+RC+EG + VK
Sbjct: 470 WTMPRRVTEALYSWEEAGALAKDRTRWRIIPASIWWAIWKERNSRCFEGIENSVQDVKLN 529
Query: 474 CL 479
C+
Sbjct: 530 CI 531
>ref|XP_006347119.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
tuberosum]
Length = 450
Score = 48.9 bits (115), Expect(2) = 5e-09
Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 1/106 (0%)
Frame = +2
Query: 2 WLASKGGSYPVKATILQ*NQSSNQETNWPWKMLWRTKAAPNELALNGKKQKRLV*LK*HY 181
W + G + V + ++SS Q WPWK +W+ + K + +
Sbjct: 259 WKGNNRGEFKVHSAYRLMDESSQQSPIWPWKQVWKCRIPHKVSCFIWLLAKEAALTQDNV 318
Query: 182 REEVTQSAVSIFFCEDSLETRNHL-LNCKFTCQIWPFSCIFLEFFG 316
+ F C ++LET NHL L+CK+T Q+W IFL G
Sbjct: 319 MKRGITLCSRCFLCGETLETVNHLFLHCKYTRQLWR---IFLSLKG 361
Score = 37.0 bits (84), Expect(2) = 5e-09
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Frame = +3
Query: 303 WSFLANAPRCETSWQGQRIEKITKQTWKTIPLCI---IWLERNNRCYEGRIQHLSFVKYR 473
W+ SW+ + W+ IP I IW ERN+RC+EG + VK
Sbjct: 364 WTMPRRVTEALYSWEEAGALAKDRTRWRIIPASIWWAIWKERNSRCFEGIENSVQDVKLN 423
Query: 474 CL 479
C+
Sbjct: 424 CI 425
>ref|XP_006354966.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
tuberosum]
Length = 397
Score = 44.3 bits (103), Expect(2) = 2e-07
Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 1/95 (1%)
Frame = +2
Query: 2 WLASKGGSYPVKATILQ*NQSSNQETNWPWKMLWRTKAAPNELALNGKKQKRLV*LK*HY 181
W G + V + NQ +Q PWK++W+ K + K V + +
Sbjct: 206 WKCHNKGLFTVSSAYRNMNQMGSQVNFLPWKLIWKVKIPYKVVVFTWLVVKEAVLTQENL 265
Query: 182 REEVTQSAVSIFFCEDSLETRNHL-LNCKFTCQIW 283
+ Q FCE ET NHL L+CK ++W
Sbjct: 266 MKRGIQMCPRCCFCEQVAETINHLFLHCKVVGKLW 300
Score = 36.2 bits (82), Expect(2) = 2e-07
Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Frame = +3
Query: 279 FGLFLAYFWSFLANAPRCETSWQGQRIEKITKQTWKTIPLCI---IWLERNNRCYEGRIQ 449
F F W+ + SW + K WK +P I IW ERN+R ++ +
Sbjct: 303 FTSFRGISWTVPGRTGQALESWNMEGSGSTDKSRWKIVPAVIWWTIWKERNSRNFDNKSS 362
Query: 450 HLSFVKYRCL 479
L +K C+
Sbjct: 363 PLHKIKMNCI 372
>ref|XP_006355601.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
tuberosum]
Length = 399
Score = 44.7 bits (104), Expect(2) = 5e-07
Identities = 27/95 (28%), Positives = 39/95 (41%), Gaps = 1/95 (1%)
Frame = +2
Query: 2 WLASKGGSYPVKATILQ*NQSSNQETNWPWKMLWRTKAAPNELALNGKKQKRLV*LK*HY 181
W S G + V A Q S Q WPW+ +W+ + K + +
Sbjct: 208 WKGSSKGIFKVGAAYRLMEQPSQQIPIWPWRQIWKGRIPYKVSCFIWLLAKEAALTQDNV 267
Query: 182 REEVTQSAVSIFFCEDSLETRNHL-LNCKFTCQIW 283
+ F C ++ ET NHL L+CKFT Q+W
Sbjct: 268 MKRGITLCSRCFLCGETSETVNHLFLHCKFTQQLW 302
Score = 34.7 bits (78), Expect(2) = 5e-07
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Frame = +3
Query: 303 WSFLANAPRCETSWQGQRIEKITKQTWKTIPLCI---IWLERNNRCYEGRIQHLSFVKYR 473
W+ SW+ + + W+ IP I W ERN+RC+E + VK
Sbjct: 313 WAMPRRITEALKSWEEAGVLAKDRTRWRIIPASIWWATWKERNSRCFESVENSMQKVKLN 372
Query: 474 CL 479
C+
Sbjct: 373 CI 374
>ref|XP_006352964.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
tuberosum]
Length = 323
Score = 44.7 bits (104), Expect(2) = 5e-07
Identities = 27/95 (28%), Positives = 39/95 (41%), Gaps = 1/95 (1%)
Frame = +2
Query: 2 WLASKGGSYPVKATILQ*NQSSNQETNWPWKMLWRTKAAPNELALNGKKQKRLV*LK*HY 181
W S G + V A Q S Q WPW+ +W+ + K + +
Sbjct: 132 WKGSSKGIFKVGAAYRLMEQPSQQIPIWPWRQIWKGRIPYKVSCFIWLLAKEAALTQDNV 191
Query: 182 REEVTQSAVSIFFCEDSLETRNHL-LNCKFTCQIW 283
+ F C ++ ET NHL L+CKFT Q+W
Sbjct: 192 MKRGITLCSRCFLCGETSETVNHLFLHCKFTQQLW 226
Score = 34.7 bits (78), Expect(2) = 5e-07
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Frame = +3
Query: 303 WSFLANAPRCETSWQGQRIEKITKQTWKTIPLCI---IWLERNNRCYEGRIQHLSFVKYR 473
W+ SW+ + + W+ IP I W ERN+RC+E + VK
Sbjct: 237 WAMPRRITEALKSWEEAGVLAKDRTRWRIIPASIWWATWKERNSRCFESVENSMQKVKLN 296
Query: 474 CL 479
C+
Sbjct: 297 CI 298
>ref|XP_006353602.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
tuberosum]
Length = 517
Score = 47.0 bits (110), Expect(2) = 1e-06
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = +3
Query: 303 WSFLANAPRCETSWQGQRIEKITKQTWKTIPLCI---IWLERNNRCYEGRIQHLSFVKYR 473
W+ SW + K K+ W+ IP CI +W ERNNRC++ R + VK+
Sbjct: 431 WTMPERTSNVLKSWVRRGSTKSQKRWWRLIPSCIWWSVWKERNNRCFDNRSNSIHKVKWN 490
Query: 474 CL 479
C+
Sbjct: 491 CI 492
Score = 31.2 bits (69), Expect(2) = 1e-06
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Frame = +1
Query: 130 CFEWEEAKEACLTQVALQRRSYSICSKHIFL*RFIGNQKSSP*LQIHLPDLA----FFLH 297
CF W K ACLTQ LQ++ + + FL S L +H A FL
Sbjct: 369 CFTWLVIKRACLTQEVLQKKGRQLVPR-CFLCNLTSETNSH--LFLHCNYTAQIWNLFLS 425
Query: 298 IFGVFWLMPQ 327
I + W MP+
Sbjct: 426 ISNLNWTMPE 435
>ref|XP_006345709.1| PREDICTED: putative ribonuclease H protein At1g65750-like isoform
X1 [Solanum tuberosum]
Length = 284
Score = 45.1 bits (105), Expect(2) = 2e-06
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = +3
Query: 303 WSFLANAPRCETSWQGQRIEKITKQTWKTIPLCI---IWLERNNRCYEGRIQHLSFVKYR 473
W+ SW + K K+ W+ IP CI +W ERN+RC++ R + VK+
Sbjct: 198 WTMPERTSNVLKSWVRRGSTKSQKRWWRLIPSCIWWSVWKERNSRCFDNRSNSIHKVKWN 257
Query: 474 CL 479
C+
Sbjct: 258 CI 259
Score = 32.0 bits (71), Expect(2) = 2e-06
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Frame = +1
Query: 130 CFEWEEAKEACLTQVALQRRSYSICSKHIFL*RFIGNQKSSP*LQIHLPDLA----FFLH 297
CF W K ACLTQ LQ++ + + FL S L +H A FL+
Sbjct: 136 CFTWLVIKRACLTQEVLQKKGRQLVPR-CFLCNLTSETNSH--LFLHCNYTAQIWNLFLN 192
Query: 298 IFGVFWLMPQ 327
I + W MP+
Sbjct: 193 ISNLNWTMPE 202
>ref|XP_006345710.1| PREDICTED: putative ribonuclease H protein At1g65750-like isoform
X2 [Solanum tuberosum]
Length = 284
Score = 44.3 bits (103), Expect(2) = 6e-06
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = +3
Query: 303 WSFLANAPRCETSWQGQRIEKITKQTWKTIPLCI---IWLERNNRCYEGRIQHLSFVKYR 473
W+ SW + K K+ W+ IP CI +W ERN+RC++ R + VK+
Sbjct: 198 WTMPERTSNVLKSWVRRGGTKSQKRWWRLIPSCIWWSVWKERNSRCFDNRSNSIHKVKWN 257
Query: 474 CL 479
C+
Sbjct: 258 CI 259
Score = 31.2 bits (69), Expect(2) = 6e-06
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Frame = +1
Query: 130 CFEWEEAKEACLTQVALQRRSYSICSKHIFL*RFIGNQKSSP*LQIHLPDLA----FFLH 297
CF W K ACLTQ LQ++ + + FL S L +H A FL
Sbjct: 136 CFTWLVIKRACLTQEVLQKKGRQLVPR-CFLCNLTSETNSH--LFLHCNYTAQIWNLFLS 192
Query: 298 IFGVFWLMPQ 327
I + W MP+
Sbjct: 193 ISNLNWTMPE 202