BLASTX nr result

ID: Atropa21_contig00039866 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atropa21_contig00039866
         (948 letters)

Database: nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAT39281.2| Integrase core domain containing protein [Solanum...    52   6e-13
emb|CAN75700.1| hypothetical protein VITISV_035987 [Vitis vinifera]    50   1e-11
gb|AAT38708.1| Putative polyprotein, identical [Solanum demissum]      47   3e-10
ref|XP_004247314.1| PREDICTED: uncharacterized protein LOC101256...    58   2e-08
ref|XP_004237641.1| PREDICTED: uncharacterized protein LOC101258...    58   3e-08
emb|CAN74166.1| hypothetical protein VITISV_007721 [Vitis vinifera]    44   6e-08
emb|CAN83506.1| hypothetical protein VITISV_027576 [Vitis vinifera]    42   6e-06

>gb|AAT39281.2| Integrase core domain containing protein [Solanum demissum]
          Length = 1760

 Score = 52.4 bits (124), Expect(2) = 6e-13
 Identities = 30/62 (48%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
 Frame = +2

Query: 158 TSIEFFPPNFLVKDLTVLTTFLCGPNKAGL*EWPSLS---RPTINVAIAGPSLHMWLRRL 328
           TSIEFFP ++ VKDL+       G N+ GL EWP  S    P  NV +    LH+W RRL
Sbjct: 390 TSIEFFPFSYCVKDLSTGAPLFRGQNRDGLYEWPLGSAHHTPQCNVVV---PLHLWHRRL 446

Query: 329 GH 334
           GH
Sbjct: 447 GH 448



 Score = 48.9 bits (115), Expect(2) = 6e-13
 Identities = 23/42 (54%), Positives = 30/42 (71%)
 Frame = +1

Query: 28  SQTGTTHLRA*NNAFKLPNVLCAPAIKCKLISISQFCKDNLT 153
           S TG T+L A N  FKL N LC+ +IK  L+S+S+FC+DN T
Sbjct: 349 SHTGNTNLSASNQQFKLLNTLCSHSIKNNLLSVSKFCRDNHT 390


>emb|CAN75700.1| hypothetical protein VITISV_035987 [Vitis vinifera]
          Length = 1099

 Score = 50.1 bits (118), Expect(2) = 1e-11
 Identities = 27/64 (42%), Positives = 36/64 (56%)
 Frame = +2

Query: 161 SIEFFPPNFLVKDLTVLTTFLCGPNKAGL*EWPSLSRPTINVAIAGPSLHMWLRRLGHTI 340
           SIEF P  FLVKD+   TT L G  K G+ EWP +S P +  +    +L  W +RLGH  
Sbjct: 474 SIEFLPTAFLVKDIQTRTTLLKGNTKDGVYEWP-ISPPLLAFSSRKTTLSEWHQRLGHPT 532

Query: 341 LEFI 352
            + +
Sbjct: 533 FKIL 536



 Score = 46.6 bits (109), Expect(2) = 1e-11
 Identities = 23/45 (51%), Positives = 28/45 (62%)
 Frame = +1

Query: 13  SNYSKSQTGTTHLRA*NNAFKLPNVLCAPAIKCKLISISQFCKDN 147
           S  S +  G++ L   +N FKL NVLC P +K  LISISQFC  N
Sbjct: 427 SGLSITHIGSSSLHTTHNTFKLNNVLCVPTMKKNLISISQFCTSN 471


>gb|AAT38708.1| Putative polyprotein, identical [Solanum demissum]
          Length = 878

 Score = 47.0 bits (110), Expect(2) = 3e-10
 Identities = 21/48 (43%), Positives = 30/48 (62%)
 Frame = +1

Query: 10  DSNYSKSQTGTTHLRA*NNAFKLPNVLCAPAIKCKLISISQFCKDNLT 153
           D     +  G T ++A N+ F + N LCAP+IK  LIS+++ C DNLT
Sbjct: 275 DKTIPITNAGLTQIKASNSNFMISNTLCAPSIKKNLISVAKICTDNLT 322



 Score = 45.1 bits (105), Expect(2) = 3e-10
 Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
 Frame = +2

Query: 155 VTSIEFFPPNFLVKDLTVLTTFLCGPNKAGL*EWPSLSR--PTINVAIAGPSLHMWLRRL 328
           +TSI F P +FL+KDL      + G NK GL EWP  +   P+ N      S  +W RRL
Sbjct: 321 LTSINFLPHSFLMKDLKTRRLLVQGRNKHGLYEWPQRNHVSPSANFTSTKVSRQLWHRRL 380


>ref|XP_004247314.1| PREDICTED: uncharacterized protein LOC101256706 [Solanum
           lycopersicum]
          Length = 391

 Score = 58.2 bits (139), Expect(2) = 2e-08
 Identities = 27/41 (65%), Positives = 33/41 (80%)
 Frame = +1

Query: 28  SQTGTTHLRA*NNAFKLPNVLCAPAIKCKLISISQFCKDNL 150
           S TG+T L A NN FKL + LCAP+IK KLIS+S+FC+DNL
Sbjct: 246 SHTGSTKLNASNNVFKLTHTLCAPSIKRKLISVSKFCQDNL 286



 Score = 27.7 bits (60), Expect(2) = 2e-08
 Identities = 12/14 (85%), Positives = 13/14 (92%)
 Frame = +2

Query: 161 SIEFFPPNFLVKDL 202
           SIEFFP NF+VKDL
Sbjct: 288 SIEFFPFNFVVKDL 301


>ref|XP_004237641.1| PREDICTED: uncharacterized protein LOC101258251 [Solanum
           lycopersicum]
          Length = 368

 Score = 57.8 bits (138), Expect(2) = 3e-08
 Identities = 27/41 (65%), Positives = 32/41 (78%)
 Frame = +1

Query: 28  SQTGTTHLRA*NNAFKLPNVLCAPAIKCKLISISQFCKDNL 150
           S TG+T L A NN FKL   LCAP+IK KLIS+S+FC+DNL
Sbjct: 260 SHTGSTKLNASNNVFKLTRTLCAPSIKRKLISVSKFCQDNL 300



 Score = 27.7 bits (60), Expect(2) = 3e-08
 Identities = 12/14 (85%), Positives = 13/14 (92%)
 Frame = +2

Query: 161 SIEFFPPNFLVKDL 202
           SIEFFP NF+VKDL
Sbjct: 302 SIEFFPFNFVVKDL 315


>emb|CAN74166.1| hypothetical protein VITISV_007721 [Vitis vinifera]
          Length = 631

 Score = 44.3 bits (103), Expect(2) = 6e-08
 Identities = 25/64 (39%), Positives = 34/64 (53%)
 Frame = +2

Query: 161 SIEFFPPNFLVKDLTVLTTFLCGPNKAGL*EWPSLSRPTINVAIAGPSLHMWLRRLGHTI 340
           SIEF P   LVKD+    T L G  K G+ EWP +S P +  +    +L  W +RLGH  
Sbjct: 96  SIEFLPTALLVKDIQTGITLLKGNTKDGVNEWP-VSPPLLAFSSLKTTLSEWHQRLGHPA 154

Query: 341 LEFI 352
            + +
Sbjct: 155 FKIL 158



 Score = 40.0 bits (92), Expect(2) = 6e-08
 Identities = 22/45 (48%), Positives = 27/45 (60%)
 Frame = +1

Query: 13  SNYSKSQTGTTHLRA*NNAFKLPNVLCAPAIKCKLISISQFCKDN 147
           S  S + TG++ L   +N FKL NVL  P +K  LISISQF   N
Sbjct: 49  SGLSITHTGSSSLHTTHNTFKLNNVLYVPTMKKNLISISQFGTSN 93


>emb|CAN83506.1| hypothetical protein VITISV_027576 [Vitis vinifera]
          Length = 1172

 Score = 42.4 bits (98), Expect(2) = 6e-06
 Identities = 25/58 (43%), Positives = 30/58 (51%)
 Frame = +2

Query: 161 SIEFFPPNFLVKDLTVLTTFLCGPNKAGL*EWPSLSRPTINVAIAGPSLHMWLRRLGH 334
           SI F P +FLVKDL    T L G  K G+ EW  +S P +  +    S   W  RLGH
Sbjct: 315 SITFLPSSFLVKDLRTGATLLKGKTKDGVYEW-LVSSPLLAFSSVKTSSSEWHHRLGH 371



 Score = 35.0 bits (79), Expect(2) = 6e-06
 Identities = 18/40 (45%), Positives = 22/40 (55%)
 Frame = +1

Query: 28  SQTGTTHLRA*NNAFKLPNVLCAPAIKCKLISISQFCKDN 147
           + TG+  L   N  F L NVLC P +K  LISIS+    N
Sbjct: 273 THTGSLSLHTSNAQFSLTNVLCVPGMKKNLISISKLXISN 312


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