BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atropa21_contig00038833
         (995 letters)

Database: nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAT38744.1| Putative gag-pol polyprotein, identical [Solanum ...   340   7e-91
gb|AAT38724.1| Putative retrotransposon protein, identical [Sola...   338   1e-90
gb|AAV31171.1| Putative polyprotein, identical [Solanum tuberosum]    331   3e-88
gb|ABI34354.1| Retrotransposon gag protein [Solanum demissum]         292   2e-76
ref|XP_006364939.1| PREDICTED: uncharacterized protein LOC102581...   290   8e-76
gb|AAT39297.2| Gag-pol protein, putative [Solanum demissum]           289   1e-75
gb|EOY19264.1| Uncharacterized protein TCM_044274 [Theobroma cacao]   257   6e-66
gb|ABI34339.1| Polyprotein, 3'-partial, putative [Solanum demissum]   246   1e-62
gb|AAT66771.2| Putative polyprotein, identical [Solanum demissum]     245   2e-62
dbj|BAL46523.1| hypothetical protein [Gentiana scabra x Gentiana...   235   2e-59
gb|EOY00215.1| DNA/RNA polymerases superfamily protein [Theobrom...   233   9e-59
gb|AAD20658.1| putative retroelement pol polyprotein [Arabidopsi...   233   9e-59
gb|EOY00082.1| DNA/RNA polymerases superfamily protein [Theobrom...   232   1e-58
emb|CAC44142.1| putative polyprotein [Cicer arietinum]                231   3e-58
gb|EOY26510.1| DNA/RNA polymerases superfamily protein [Theobrom...   228   4e-57
gb|EOY14138.1| Uncharacterized protein TCM_033423 [Theobroma cacao]   227   5e-57
gb|ABA97771.1| retrotransposon protein, putative, Ty3-gypsy subc...   221   4e-55
gb|AAD22153.1|AF061282_6 polyprotein [Sorghum bicolor]                220   8e-55
gb|ABB47020.1| retrotransposon protein, putative, Ty3-gypsy subc...   219   1e-54
emb|CAE05310.2| OSJNBa0056L23.8 [Oryza sativa Japonica Group]         219   1e-54

>gb|AAT38744.1| Putative gag-pol polyprotein, identical [Solanum demissum]
          Length = 1515

 Score =  340 bits (871), Expect = 7e-91
 Identities = 177/341 (51%), Positives = 232/341 (68%), Gaps = 12/341 (3%)
 Frame = +2

Query: 8    NYLYEIHINIYTNHKSLQYIFK*RELNLS*MRWLKLIKDYNVDVLYHPRKANMVVNYPSI 187
            +YLY +H++I+T+HKSLQY+   +ELNL   RWL+L+KDY++ +LYHP KAN+V +  S 
Sbjct: 1009 HYLYGVHVDIFTDHKSLQYVLTQKELNLRQRRWLELLKDYDLSILYHPGKANVVADSLSR 1068

Query: 188  RYMRSQAHIKEDNRTMIKEICRLASLGV*FLDSEDSGIIV*N*SESSLLAVVRRSILVIP 367
              M S  HI+E  R + K++ RLA LGV F DS + GI V + +ESSL++ V+      P
Sbjct: 1069 LSMGSTTHIEEGRRELAKDMHRLACLGVRFTDSTEGGIAVTSKAESSLMSEVKEKQDQDP 1128

Query: 368  IYCS*KV------------GDDSTLRYQGSLCVLDANGIREQIMAEAHTSRYSIHIGFTK 511
            I    K             G D  LRYQG LCV   +G++E++M EAH+SRYS+H G TK
Sbjct: 1129 ILLELKANVQKQRVLAFEQGGDGVLRYQGRLCVPMVDGLQERVMEEAHSSRYSVHPGSTK 1188

Query: 512  MYHDFK*IYWWNDMKRNVVDIVAKCLNCQQVKVKY*RSSGLAPNIDILV*K*DITNIDFL 691
            MY D +  YWWN MK+ + + VAKC NCQQVKV++ R  GLA NI++   K ++ N+DF+
Sbjct: 1189 MYRDLREFYWWNGMKKGIAEFVAKCPNCQQVKVEHQRPGGLAQNIELPEWKWEMINMDFI 1248

Query: 692  TGLPCSA*MHDLISVIVDRLTKSAHFL*IKTIDSTEDQAQLYIRKIVKLHNIPVSIILDC 871
            TGLP S   HD I VIVDR+TKSAHFL ++T  S ED A+LYI++IV+LH +P+SII D 
Sbjct: 1249 TGLPRSRRQHDSIWVIVDRMTKSAHFLPVRTTHSAEDYAKLYIQEIVRLHGVPISIISDR 1308

Query: 872  DTQFTAFFWKSLKKEFGIKVNLSTTFQPQTDGHVERTIHTL 994
              QFTA FWKS +K  G KV+LST F PQTDG  ERTI TL
Sbjct: 1309 GAQFTAQFWKSFQKGLGSKVSLSTAFHPQTDGQAERTIQTL 1349


>gb|AAT38724.1| Putative retrotransposon protein, identical [Solanum demissum]
          Length = 1602

 Score =  338 bits (868), Expect = 1e-90
 Identities = 177/341 (51%), Positives = 231/341 (67%), Gaps = 12/341 (3%)
 Frame = +2

Query: 8    NYLYEIHINIYTNHKSLQYIFK*RELNLS*MRWLKLIKDYNVDVLYHPRKANMVVNYPSI 187
            +YLY +H++I+T+HKSLQY+   + LNL   RWL+L+KDY++ +LYHP KAN+V +  S 
Sbjct: 1015 HYLYGVHVDIFTDHKSLQYVLTQKALNLRQRRWLELLKDYDLSILYHPGKANVVADSLSR 1074

Query: 188  RYMRSQAHIKEDNRTMIKEICRLASLGV*FLDSEDSGIIV*N*SESSLLAVVRRSILVIP 367
              M S  HI+E  R + K++ RLA LGV F DS + GI V + +ESSL++ V+      P
Sbjct: 1075 LSMGSTTHIEEGRRELAKDMHRLACLGVRFTDSTEGGIAVTSKAESSLMSEVKEKQDQDP 1134

Query: 368  IYCS*KV------------GDDSTLRYQGSLCVLDANGIREQIMAEAHTSRYSIHIGFTK 511
            I    K             G D  LRYQG LCV   +G++E++M EAH+SRYS+H G TK
Sbjct: 1135 ILLELKANVQKQRVLAFEQGGDGVLRYQGRLCVPMVDGLQERVMEEAHSSRYSVHPGSTK 1194

Query: 512  MYHDFK*IYWWNDMKRNVVDIVAKCLNCQQVKVKY*RSSGLAPNIDILV*K*DITNIDFL 691
            MY D +  YWWN MK+ + + VAKC NCQQVKV++ R  GLA NI++   K ++ N+DF+
Sbjct: 1195 MYRDLREFYWWNGMKKGIAEFVAKCPNCQQVKVEHQRPGGLAQNIELPEWKWEMINMDFI 1254

Query: 692  TGLPCSA*MHDLISVIVDRLTKSAHFL*IKTIDSTEDQAQLYIRKIVKLHNIPVSIILDC 871
            TGLP S   HD I VIVDR+TKSAHFL +KT  S ED A+LYI++IV+LH +P+SII D 
Sbjct: 1255 TGLPRSRRQHDSIWVIVDRMTKSAHFLPVKTTHSAEDYAKLYIQEIVRLHGVPISIISDR 1314

Query: 872  DTQFTAFFWKSLKKEFGIKVNLSTTFQPQTDGHVERTIHTL 994
              QFTA FWKS +K  G KV+LST F PQTDG  ERTI TL
Sbjct: 1315 GAQFTAQFWKSFQKGLGSKVSLSTAFHPQTDGQAERTIQTL 1355


>gb|AAV31171.1| Putative polyprotein, identical [Solanum tuberosum]
          Length = 1487

 Score =  331 bits (848), Expect = 3e-88
 Identities = 170/332 (51%), Positives = 232/332 (69%), Gaps = 3/332 (0%)
 Frame = +2

Query: 8    NYLYEIHINIYTNHKSLQYIFK*RELNLS*MRWLKLIKDYNVDVLYHPRKANMVVNYPSI 187
            +YLY +H++++T+HKSLQY+   +ELNL   RWL+L+KDY++ +LYHP KAN+V +  S 
Sbjct: 915  HYLYGVHVDVFTDHKSLQYVLTQKELNLRQRRWLELLKDYDLSILYHPGKANVVADSLSR 974

Query: 188  RYMRSQAHIKEDNRTMIKEICRLASLGV*FLDSEDSGIIV*N*SESSLLA---VVRRSIL 358
              M +  HI+E+ R + K++ RLA LGV  +DS   GI V N +ESSL++   V ++ +L
Sbjct: 975  LSMGNTTHIEEEKRELAKDVHRLACLGVRLIDSAKGGISVTNEAESSLVSEANVQKQRVL 1034

Query: 359  VIPIYCS*KVGDDSTLRYQGSLCVLDANGIREQIMAEAHTSRYSIHIGFTKMYHDFK*IY 538
                    + G D  LRYQG LCV   +G++++IM EAH+SRYSIH GFTKMY D + +Y
Sbjct: 1035 AF------EQGGDGVLRYQGRLCVPMVDGLQKRIMEEAHSSRYSIHPGFTKMYRDLREVY 1088

Query: 539  WWNDMKRNVVDIVAKCLNCQQVKVKY*RSSGLAPNIDILV*K*DITNIDFLTGLPCSA*M 718
            WWN MK+ + + VAKC NCQQVKV++ R  GLA  I++L  K ++ N+DF+TGLP S   
Sbjct: 1089 WWNGMKKGIAEFVAKCPNCQQVKVEHQRLGGLAQRIELLELKWEMINMDFITGLPRSRRQ 1148

Query: 719  HDLISVIVDRLTKSAHFL*IKTIDSTEDQAQLYIRKIVKLHNIPVSIILDCDTQFTAFFW 898
            HD I VIVDR+TKSAHFL +KT +S ED A+LYI+++V+LH +P+SII +   Q    FW
Sbjct: 1149 HDSIWVIVDRMTKSAHFLPVKTTNSAEDYAKLYIQEVVRLHGVPISIISNRGAQ----FW 1204

Query: 899  KSLKKEFGIKVNLSTTFQPQTDGHVERTIHTL 994
            K  +K  G+ VNLST F PQTDG  ERTI TL
Sbjct: 1205 KFFQKGLGLNVNLSTAFHPQTDGQAERTIQTL 1236


>gb|ABI34354.1| Retrotransposon gag protein [Solanum demissum]
          Length = 4543

 Score =  292 bits (747), Expect = 2e-76
 Identities = 162/341 (47%), Positives = 211/341 (61%), Gaps = 12/341 (3%)
 Frame = +2

Query: 8    NYLYEIHINIYTNHKSLQYIFK*RELNLS*MRWLKLIKDYNVDVLYHPRKANMVVNYPSI 187
            +YLY +H++I+T+HKSLQY+   +ELNL   RWL+L+KDY + +LYHP KAN+V +  S 
Sbjct: 791  HYLYGVHVDIFTDHKSLQYVLTQKELNLRQRRWLELLKDYVLSILYHPGKANVVADSLSR 850

Query: 188  RYMRSQAHIKEDNRTMIKEICRLASLGV*FLDSEDSGIIV*N*SESSLLAVVRRSILVIP 367
              M S AHI+E  R + K++ RLA LGV F DS   GI V N +ESSL+  V++     P
Sbjct: 851  LSMGSTAHIEEGRRELTKDVHRLACLGVRFTDSAKGGIAVANRAESSLVLEVKKKQDQDP 910

Query: 368  IYCS*KV------------GDDSTLRYQGSLCVLDANGIREQIMAEAHTSRYSIHIGFTK 511
            I    K             G D  LRYQG LCV   +G++E+IM EAH+SRYS+H G TK
Sbjct: 911  ILLELKANVQKQRVLAFEQGGDGALRYQGRLCVPMVDGLQEKIMEEAHSSRYSVHPGSTK 970

Query: 512  MYHDFK*IYWWNDMKRNVVDIVAKCLNCQQVKVKY*RSSGLAPNIDILV*K*DITNIDFL 691
            MY D + +YWWN MK+ + + VAKC NCQQVKV++ R  GLA  I++   K ++ N+DF+
Sbjct: 971  MYRDLREVYWWNGMKKGIAEFVAKCPNCQQVKVEHQRPGGLAQRIELPEWKWEMINMDFI 1030

Query: 692  TGLPCSA*MHDLISVIVDRLTKSAHFL*IKTIDSTEDQAQLYIRKIVKLHNIPVSIILDC 871
            TGLP S   HD I VIVDR+TKSAHFL +KT ++TED A+LY+++I              
Sbjct: 1031 TGLPRSRRQHDSIWVIVDRMTKSAHFLPVKTTNTTEDYAKLYVQEI-------------- 1076

Query: 872  DTQFTAFFWKSLKKEFGIKVNLSTTFQPQTDGHVERTIHTL 994
                         K  G KVNLST F PQTDG  E TI  L
Sbjct: 1077 -------------KGLGSKVNLSTAFHPQTDGQAEHTIQIL 1104



 Score =  292 bits (747), Expect = 2e-76
 Identities = 162/341 (47%), Positives = 211/341 (61%), Gaps = 12/341 (3%)
 Frame = +2

Query: 8    NYLYEIHINIYTNHKSLQYIFK*RELNLS*MRWLKLIKDYNVDVLYHPRKANMVVNYPSI 187
            +YLY +H++I+T+HKSLQY+   +ELNL   RWL+L+KDY + +LYHP KAN+V +  S 
Sbjct: 2301 HYLYGVHVDIFTDHKSLQYVLTQKELNLRQRRWLELLKDYVLSILYHPGKANVVADSLSR 2360

Query: 188  RYMRSQAHIKEDNRTMIKEICRLASLGV*FLDSEDSGIIV*N*SESSLLAVVRRSILVIP 367
              M S AHI+E  R + K++ RLA LGV F DS   GI V N +ESSL+  V++     P
Sbjct: 2361 LSMGSTAHIEEGRRELTKDVHRLACLGVRFTDSAKGGIAVANRAESSLVLEVKKKQDQDP 2420

Query: 368  IYCS*KV------------GDDSTLRYQGSLCVLDANGIREQIMAEAHTSRYSIHIGFTK 511
            I    K             G D  LRYQG LCV   +G++E+IM EAH+SRYS+H G TK
Sbjct: 2421 ILLELKANVQKQRVLAFEQGGDGALRYQGRLCVPMVDGLQEKIMEEAHSSRYSVHPGSTK 2480

Query: 512  MYHDFK*IYWWNDMKRNVVDIVAKCLNCQQVKVKY*RSSGLAPNIDILV*K*DITNIDFL 691
            MY D + +YWWN MK+ + + VAKC NCQQVKV++ R  GLA  I++   K ++ N+DF+
Sbjct: 2481 MYRDLREVYWWNGMKKGIAEFVAKCPNCQQVKVEHQRPGGLAQRIELPEWKWEMINMDFI 2540

Query: 692  TGLPCSA*MHDLISVIVDRLTKSAHFL*IKTIDSTEDQAQLYIRKIVKLHNIPVSIILDC 871
            TGLP S   HD I VIVDR+TKSAHFL +KT ++TED A+LY+++I              
Sbjct: 2541 TGLPRSRRQHDSIWVIVDRMTKSAHFLPVKTTNTTEDYAKLYVQEI-------------- 2586

Query: 872  DTQFTAFFWKSLKKEFGIKVNLSTTFQPQTDGHVERTIHTL 994
                         K  G KVNLST F PQTDG  E TI  L
Sbjct: 2587 -------------KGLGSKVNLSTAFHPQTDGQAEHTIQIL 2614



 Score =  292 bits (747), Expect = 2e-76
 Identities = 162/341 (47%), Positives = 211/341 (61%), Gaps = 12/341 (3%)
 Frame = +2

Query: 8    NYLYEIHINIYTNHKSLQYIFK*RELNLS*MRWLKLIKDYNVDVLYHPRKANMVVNYPSI 187
            +YLY +H++I+T+HKSLQY+   +ELNL   RWL+L+KDY + +LYHP KAN+V +  S 
Sbjct: 3811 HYLYGVHVDIFTDHKSLQYVLTQKELNLRQRRWLELLKDYVLSILYHPGKANVVADSLSR 3870

Query: 188  RYMRSQAHIKEDNRTMIKEICRLASLGV*FLDSEDSGIIV*N*SESSLLAVVRRSILVIP 367
              M S AHI+E  R + K++ RLA LGV F DS   GI V N +ESSL+  V++     P
Sbjct: 3871 LSMGSTAHIEEGRRELTKDVHRLACLGVRFTDSAKGGIAVANRAESSLVLEVKKKQDQDP 3930

Query: 368  IYCS*KV------------GDDSTLRYQGSLCVLDANGIREQIMAEAHTSRYSIHIGFTK 511
            I    K             G D  LRYQG LCV   +G++E+IM EAH+SRYS+H G TK
Sbjct: 3931 ILLELKANVQKQRVLAFEQGGDGALRYQGRLCVPMVDGLQEKIMEEAHSSRYSVHPGSTK 3990

Query: 512  MYHDFK*IYWWNDMKRNVVDIVAKCLNCQQVKVKY*RSSGLAPNIDILV*K*DITNIDFL 691
            MY D + +YWWN MK+ + + VAKC NCQQVKV++ R  GLA  I++   K ++ N+DF+
Sbjct: 3991 MYRDLREVYWWNGMKKGIAEFVAKCPNCQQVKVEHQRPGGLAQRIELPEWKWEMINMDFI 4050

Query: 692  TGLPCSA*MHDLISVIVDRLTKSAHFL*IKTIDSTEDQAQLYIRKIVKLHNIPVSIILDC 871
            TGLP S   HD I VIVDR+TKSAHFL +KT ++TED A+LY+++I              
Sbjct: 4051 TGLPRSRRQHDSIWVIVDRMTKSAHFLPVKTTNTTEDYAKLYVQEI-------------- 4096

Query: 872  DTQFTAFFWKSLKKEFGIKVNLSTTFQPQTDGHVERTIHTL 994
                         K  G KVNLST F PQTDG  E TI  L
Sbjct: 4097 -------------KGLGSKVNLSTAFHPQTDGQAEHTIQIL 4124


>ref|XP_006364939.1| PREDICTED: uncharacterized protein LOC102581051 [Solanum tuberosum]
          Length = 1946

 Score =  290 bits (741), Expect = 8e-76
 Identities = 158/341 (46%), Positives = 219/341 (64%), Gaps = 12/341 (3%)
 Frame = +2

Query: 8    NYLYEIHINIYTNHKSLQYIFK*RELNLS*MRWLKLIKDYNVDVLYHPRKANMVVNYPSI 187
            +YLY +H++++T+HKSLQY+F  ++LNL   RWL+ +KDY++ V YHP KAN+V +  S 
Sbjct: 1360 HYLYGVHVDVFTDHKSLQYVFTQKDLNLRQRRWLEFLKDYDMSVHYHPGKANVVADALSR 1419

Query: 188  RYMRSQAHIKEDNRTMIKEICRLASLGV*FLDSEDSGIIV*N*SESSLLAVV------RR 349
              M S AH+   +R M +E+ RLA LGV   +  + G++V + + SSL+  V        
Sbjct: 1420 VSMGSLAHVDIGDREMAREVHRLARLGVRLEEVGNGGVVVVDGARSSLVDEVIAKQDLDS 1479

Query: 350  SILVIP-IYCS*KV-----GDDSTLRYQGSLCVLDANGIREQIMAEAHTSRYSIHIGFTK 511
            S+L +  +    KV     G D  LRYQG LCV   +G+RE+I+ EAH S YSIH G TK
Sbjct: 1480 SLLELKALVKEGKVEVFSQGGDGALRYQGRLCVPCVDGLREKILEEAHNSSYSIHPGSTK 1539

Query: 512  MYHDFK*IYWWNDMKRNVVDIVAKCLNCQQVKVKY*RSSGLAPNIDILV*K*DITNIDFL 691
            MY D + +YWW  MK+++   V+ C +CQQVK ++ R  GL  +I+I   K +  N+DF+
Sbjct: 1540 MYRDLRDVYWWGGMKKDIAKFVSGCHSCQQVKAEHQRPGGLTQDIEIPTWKWEEINMDFV 1599

Query: 692  TGLPCSA*MHDLISVIVDRLTKSAHFL*IKTIDSTEDQAQLYIRKIVKLHNIPVSIILDC 871
             GLP +      I V+VDR+TKSAHFL +KT    ED A+LYI  +V+LH IP+SII D 
Sbjct: 1600 VGLPKTRKGFGSIWVVVDRMTKSAHFLPVKTTYGAEDYARLYIHDLVRLHGIPLSIISDR 1659

Query: 872  DTQFTAFFWKSLKKEFGIKVNLSTTFQPQTDGHVERTIHTL 994
             TQFT+ FWKS ++  G +V L+T F PQTDG  ERTI TL
Sbjct: 1660 GTQFTSHFWKSFQRGLGTRVKLTTAFHPQTDGQAERTIQTL 1700


>gb|AAT39297.2| Gag-pol protein, putative [Solanum demissum]
          Length = 1554

 Score =  289 bits (739), Expect = 1e-75
 Identities = 159/341 (46%), Positives = 205/341 (60%), Gaps = 12/341 (3%)
 Frame = +2

Query: 8    NYLYEIHINIYTNHKSLQYIFK*RELNLS*MRWLKLIKDYNVDVLYHPRKANMVVNYPSI 187
            ++LY +H++I+T+HKSLQY+   +ELNL   RWL+L+KDYN+ +LY P            
Sbjct: 1063 HHLYGVHVDIFTDHKSLQYVLTQKELNLRQRRWLELLKDYNLSILYRP------------ 1110

Query: 188  RYMRSQAHIKEDNRTMIKEICRLASLGV*FLDSEDSGIIV*N*SESSLLAVVRRSILVIP 367
                                                GI V N +ESSL++ V+      P
Sbjct: 1111 ------------------------------------GIAVANRAESSLVSEVKEKQDQDP 1134

Query: 368  IYCS*KV------------GDDSTLRYQGSLCVLDANGIREQIMAEAHTSRYSIHIGFTK 511
            I+   K             G D  LRYQG LCV   +G++E+IM EAH+SRYSIH G TK
Sbjct: 1135 IFLEFKANVQKQRVLAFEQGGDGVLRYQGRLCVPMVDGLQERIMEEAHSSRYSIHPGSTK 1194

Query: 512  MYHDFK*IYWWNDMKRNVVDIVAKCLNCQQVKVKY*RSSGLAPNIDILV*K*DITNIDFL 691
            MYHD + +YWWN MK+ + + VAKC NCQQVKV++ R  GLA  I +   K ++ N+DF+
Sbjct: 1195 MYHDLREVYWWNGMKKGIAEFVAKCPNCQQVKVEHQRPVGLAQRIKLPEWKWEMINMDFI 1254

Query: 692  TGLPCSA*MHDLISVIVDRLTKSAHFL*IKTIDSTEDQAQLYIRKIVKLHNIPVSIILDC 871
            TGLP S   HD I VIVD++TKSAHFL ++T +  ED A+LY+++IV+LH IP+SII D 
Sbjct: 1255 TGLPKSHRQHDSIWVIVDQMTKSAHFLPVRTTNIAEDYAKLYVQEIVRLHGIPISIISDR 1314

Query: 872  DTQFTAFFWKSLKKEFGIKVNLSTTFQPQTDGHVERTIHTL 994
              QFTA FWKS KK  G KVNLST F PQTDG  ERTIHTL
Sbjct: 1315 GAQFTAQFWKSFKKGLGSKVNLSTAFYPQTDGQAERTIHTL 1355


>gb|EOY19264.1| Uncharacterized protein TCM_044274 [Theobroma cacao]
          Length = 860

 Score =  257 bits (656), Expect = 6e-66
 Identities = 143/341 (41%), Positives = 207/341 (60%), Gaps = 12/341 (3%)
 Frame = +2

Query: 8    NYLYEIHINIYTNHKSLQYIFK*RELNLS*MRWLKLIKDYNVDVLYHPRKANMVVNYPSI 187
            +YLY     IY +HKSL+YIF+ R+LNL   RW++L+KDY+  +LYHP KAN+V +  S 
Sbjct: 308  HYLYGETCEIYMDHKSLKYIFQQRDLNLRQRRWMELLKDYDCTILYHPGKANVVADALSR 367

Query: 188  RYMRSQAHIKEDNRTMIKEICRLASLGV*FLDSEDSGIIV*N*SESSLLAVVRRS----- 352
            + M S AHI    R++++EI  L  +GV    +E S ++        L+  ++ +     
Sbjct: 368  KSMGSLAHISIGRRSLVREIHSLGDIGVRLEVAETSALLAHFRVRPILMDKIKEAQSKDE 427

Query: 353  ----ILVIPIYCS*KV---GDDSTLRYQGSLCVLDANGIREQIMAEAHTSRYSIHIGFTK 511
                 L  P     K+   G D  LRY   L V D +G+R +I+ EAH + Y +H G TK
Sbjct: 428  FVIKALEDPQGRKGKMFTKGTDGVLRYGTRLYVPDGDGLRREILEEAHMAAYVVHPGATK 487

Query: 512  MYHDFK*IYWWNDMKRNVVDIVAKCLNCQQVKVKY*RSSGLAPNIDILV*K*DITNIDFL 691
            MY D K +YWW  +KR+V + V+KCL CQQVK ++ + +GL   + +   K +   +DF+
Sbjct: 488  MYQDLKEVYWWEGLKRDVAEFVSKCLVCQQVKAEHQKPAGLLQPLPVPEWKWEHIAMDFV 547

Query: 692  TGLPCSA*MHDLISVIVDRLTKSAHFL*IKTIDSTEDQAQLYIRKIVKLHNIPVSIILDC 871
            TGLP ++  +D I ++VDRLTKSAHFL +KT       A++Y+ +IV+LH IP+SI+ D 
Sbjct: 548  TGLPRTSGGYDSIWIVVDRLTKSAHFLPVKTTYGAAQYARVYVDEIVRLHGIPISIVSDR 607

Query: 872  DTQFTAFFWKSLKKEFGIKVNLSTTFQPQTDGHVERTIHTL 994
              QFT+ FW  L++  G K++ ST F PQTDG  ERTI TL
Sbjct: 608  GAQFTSRFWGKLQEALGTKLDFSTAFHPQTDGQSERTIKTL 648


>gb|ABI34339.1| Polyprotein, 3'-partial, putative [Solanum demissum]
          Length = 1475

 Score =  246 bits (627), Expect = 1e-62
 Identities = 142/343 (41%), Positives = 205/343 (59%), Gaps = 14/343 (4%)
 Frame = +2

Query: 8    NYLYEIHINIYTNHKSLQYIFK*RELNLS*MRWLKLIKDYNVDVLYHPRKANMVVNYPSI 187
            +YLY +   IYT+H+SLQYI   R+LN    RW++L+KDY++ +LYHP KAN+V +  S 
Sbjct: 1027 HYLYGVRCEIYTDHRSLQYIMSQRDLNSRQRRWIELLKDYDLSILYHPGKANVVADALSR 1086

Query: 188  RY--MRSQAHIKEDNRTMIKEICRLASLGV*FLDSEDSGIIV*N*SESSLLAVVR----R 349
            +   M S A +  + R +  +I  LA+  V    S+   ++     +SSLL  +R     
Sbjct: 1087 KAVSMGSLAFLSVEERPLAMDIQFLANSMVRLDISDSRRVLAHMGVQSSLLDRIRGCQFE 1146

Query: 350  SILVIPIYCS*KVGD--------DSTLRYQGSLCVLDANGIREQIMAEAHTSRYSIHIGF 505
               ++ +      GD        D  LR+ G +CV     + + I++E H SRYSIH G 
Sbjct: 1147 DEALVALRDRVLAGDGGQASLYPDGVLRFAGRICVPRVGDLIQLILSEGHESRYSIHPGT 1206

Query: 506  TKMYHDFK*IYWWNDMKRNVVDIVAKCLNCQQVKVKY*RSSGLAPNIDILV*K*DITNID 685
            TKMY D +  YWW+ M+R++ D V++CL CQQVK ++ R  G+   + I   K +   +D
Sbjct: 1207 TKMYRDLRQHYWWSGMRRDIADFVSRCLCCQQVKAEHLRPGGVFKRLPIPEWKWERITMD 1266

Query: 686  FLTGLPCSA*MHDLISVIVDRLTKSAHFL*IKTIDSTEDQAQLYIRKIVKLHNIPVSIIL 865
            F+ GLP +    D I VIVDRLTKSAHFL ++   S E  A++YIR++V+LH +PVSII 
Sbjct: 1267 FIVGLPRTPRGVDSIWVIVDRLTKSAHFLPVQCSFSAERLARIYIREVVRLHGVPVSIIS 1326

Query: 866  DCDTQFTAFFWKSLKKEFGIKVNLSTTFQPQTDGHVERTIHTL 994
            D  +QFT+ FW++ + E G +V+LST F PQTDG  ERTI  L
Sbjct: 1327 DRGSQFTSNFWRTFQDELGTRVDLSTAFHPQTDGQSERTIQVL 1369


>gb|AAT66771.2| Putative polyprotein, identical [Solanum demissum]
          Length = 1771

 Score =  245 bits (626), Expect = 2e-62
 Identities = 141/343 (41%), Positives = 206/343 (60%), Gaps = 14/343 (4%)
 Frame = +2

Query: 8    NYLYEIHINIYTNHKSLQYIFK*RELNLS*MRWLKLIKDYNVDVLYHPRKANMVVNYPSI 187
            +YLY +   IYT+H+SLQYI   R+LN    RW++L+KDY++ +LYHP KAN+V +  S 
Sbjct: 1183 HYLYGVRCEIYTDHRSLQYIMSQRDLNSRQRRWIELLKDYDLSILYHPGKANVVADALSR 1242

Query: 188  RY--MRSQAHIKEDNRTMIKEICRLASLGV*FLDSEDSGIIV*N*SESSLLAVVR----- 346
            +   M S A +  + R +  +I  LA+  V    S+   ++     +SSLL  +R     
Sbjct: 1243 KAVSMGSLAFLSVEERPLALDIQSLANSMVRLDISDSRCVLAFMRVQSSLLDRIRGCQFE 1302

Query: 347  -------RSILVIPIYCS*KVGDDSTLRYQGSLCVLDANGIREQIMAEAHTSRYSIHIGF 505
                   R  ++        +  D  L++ G +CV     + + I++EAH SRYSIH G 
Sbjct: 1303 DDTLVALRDRVLADDGGQATLDPDGVLKFAGRICVPRVGDLIQLILSEAHESRYSIHPGT 1362

Query: 506  TKMYHDFK*IYWWNDMKRNVVDIVAKCLNCQQVKVKY*RSSGLAPNIDILV*K*DITNID 685
             KMY D +  YWW+ M+R++ D V++CL CQQVK ++ R  G    + I   K +   +D
Sbjct: 1363 AKMYRDLRQHYWWSGMRRDIADFVSRCLCCQQVKAEHLRPGGEFQRLPIPEWKWERITMD 1422

Query: 686  FLTGLPCSA*MHDLISVIVDRLTKSAHFL*IKTIDSTEDQAQLYIRKIVKLHNIPVSIIL 865
            F+ GLP ++   D I VIVDRLTKSAHFL + T  S E  A++YIR++V+LH +PVSII 
Sbjct: 1423 FVVGLPRTSRGVDSIWVIVDRLTKSAHFLPVHTTFSAERLARIYIREVVRLHGVPVSIIS 1482

Query: 866  DCDTQFTAFFWKSLKKEFGIKVNLSTTFQPQTDGHVERTIHTL 994
            D  +QFT+ FW++ ++E G +V+LST+F PQTDG  ERTI  L
Sbjct: 1483 DRGSQFTSSFWRAFQEELGTRVHLSTSFHPQTDGQSERTIQVL 1525


>dbj|BAL46523.1| hypothetical protein [Gentiana scabra x Gentiana triflora]
          Length = 1152

 Score =  235 bits (599), Expect = 2e-59
 Identities = 137/342 (40%), Positives = 197/342 (57%), Gaps = 13/342 (3%)
 Frame = +2

Query: 8    NYLYEIHINIYTNHKSLQYIFK*RELNLS*MRWLKLIKDYNVDVLYHPRKANMVVNYPSI 187
            +YLY +   I+T+HKSL++ F    LN+   RWL+ +KDY++D+ YHP KAN+V +  S 
Sbjct: 564  HYLYGVKARIFTDHKSLKFFFTQENLNMRQRRWLEFVKDYDLDIQYHPGKANVVADALSR 623

Query: 188  RYMRSQAHIKEDNRTMIKEICRLASLGV*FLDSE-DSGIIV*N*SESSLLAVVRRSILVI 364
            R + +   ++E        I +L SL +  ++ E ++       + S LL  +R      
Sbjct: 624  RPVNAITTLQE-------VIHQLDSLQIQVVEREGEAQCFAPLMARSELLDDIRAKQDED 676

Query: 365  PIYCS*K------------VGDDSTLRYQGSLCVLDANGIREQIMAEAHTSRYSIHIGFT 508
            P+    K            +  +  L Y   LCV D +G+R+Q+M EAH   +++H G T
Sbjct: 677  PVLVDLKRVAREKPTVGYQLDKNGHLWYGDRLCVPDVDGLRQQVMDEAHKIAFAVHPGST 736

Query: 509  KMYHDFK*IYWWNDMKRNVVDIVAKCLNCQQVKVKY*RSSGLAPNIDILV*K*DITNIDF 688
            KMY D K  YWW  MK N+ + VAKC  CQ+VK ++ R  GL   +++   K +   +DF
Sbjct: 737  KMYRDLKERYWWLGMKLNIAEFVAKCDTCQRVKAEHRRPGGLLKPLEVPEWKWENITMDF 796

Query: 689  LTGLPCSA*MHDLISVIVDRLTKSAHFL*IKTIDSTEDQAQLYIRKIVKLHNIPVSIILD 868
            +TGLP +   HD+I VIVDRLTKSAHFL  K     +   QLY+  IV+LH +P+SI+ D
Sbjct: 797  ITGLPRTKSGHDMIWVIVDRLTKSAHFLPCKVDMPIKKFTQLYLDNIVRLHGVPLSIVSD 856

Query: 869  CDTQFTAFFWKSLKKEFGIKVNLSTTFQPQTDGHVERTIHTL 994
             D++F + FWK L+K F  K +LST F PQTDG  ERTI TL
Sbjct: 857  RDSRFISHFWKGLQKAFETKTDLSTAFHPQTDGQSERTIQTL 898


>gb|EOY00215.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
          Length = 1537

 Score =  233 bits (594), Expect = 9e-59
 Identities = 138/341 (40%), Positives = 195/341 (57%), Gaps = 12/341 (3%)
 Frame = +2

Query: 8    NYLYEIHINIYTNHKSLQYIFK*RELNLS*MRWLKLIKDYNVDVLYHPRKANMVVNYPSI 187
            +YLY     I+ +HKSL+Y+   +ELNL   +WL+LIKDY++ + YHPRKAN+V +  S 
Sbjct: 941  HYLYGERCRIFYDHKSLKYLLTQKELNLRQRQWLELIKDYDLVIDYHPRKANVVADALSR 1000

Query: 188  RYMRSQAHIKEDNRTMIKEICRLASLGV*FLDSEDSGIIV*N*SESSLLAVVRR------ 349
            +   S A ++    +M+ E   + SLG+   + ED  ++       SLL  +R       
Sbjct: 1001 KSSSSLATLRSSYFSMLLE---MKSLGIQLNNGEDGTLLASFVVRPSLLNQIRELQKSDD 1057

Query: 350  ------SILVIPIYCS*KVGDDSTLRYQGSLCVLDANGIREQIMAEAHTSRYSIHIGFTK 511
                    L        ++ DD TL  +  +CV   + +R  I+ EAH S Y++H G TK
Sbjct: 1058 WLKQEVQKLQDGKASEFRLSDDGTLMLRDRICVPKDDQLRRAILEEAHYSAYALHPGSTK 1117

Query: 512  MYHDFK*IYWWNDMKRNVVDIVAKCLNCQQVKVKY*RSSGLAPNIDILV*K*DITNIDFL 691
            MY   K  YWW  M+R++ + VAKCL CQQ+K ++ + SG    + I   K +   +DF+
Sbjct: 1118 MYRTIKESYWWPGMERDIAEFVAKCLTCQQIKAEHQKPSGTLQPLSIPEWKWEHVTMDFV 1177

Query: 692  TGLPCSA*MHDLISVIVDRLTKSAHFL*IKTIDSTEDQAQLYIRKIVKLHNIPVSIILDC 871
             GLP +    D I VIVDRLTKSAHFL I +  S E  A+LYI +IV+LH +PVSI+ D 
Sbjct: 1178 LGLPRTQSGKDAIWVIVDRLTKSAHFLAIHSTYSIERLARLYIDEIVRLHGVPVSIVSDR 1237

Query: 872  DTQFTAFFWKSLKKEFGIKVNLSTTFQPQTDGHVERTIHTL 994
            D +FT+ FW   ++  G K+  ST F PQTDG  ERTI TL
Sbjct: 1238 DLRFTSRFWPKFQEALGTKLRFSTAFHPQTDGQSERTIQTL 1278


>gb|AAD20658.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1611

 Score =  233 bits (594), Expect = 9e-59
 Identities = 141/338 (41%), Positives = 197/338 (58%), Gaps = 9/338 (2%)
 Frame = +2

Query: 8    NYLYEIHINIYTNHKSLQYIFK*RELNLS*MRWLKLIKDYNVDVLYHPRKANMVVNYPSI 187
            +YLY   + IYT+HKSL+YIF   ELNL   RW++L+ DYN+D+ YHP KAN V +  S 
Sbjct: 1010 SYLYGAKVQIYTDHKSLKYIFTQPELNLRQRRWMELVADYNLDIAYHPGKANQVADALSR 1069

Query: 188  RYMRSQAHIKEDNRTMIKEICRLASLGV*FLDSEDSGIIV*N*SESSLLAVVRRSI---- 355
            R  RS+    E  R+ +  +  + +L V  L  E   + +    ++ LL+ +R +     
Sbjct: 1070 R--RSEV---EAERSQVDLVNMMGTLHVNALSKEVEPLGLGAADQADLLSRIRLAQERDE 1124

Query: 356  ----LVIPIYCS*KVGDDSTLRYQGSLCVLDANGIREQIMAEAHTSRYSIHIGFTKMYHD 523
                         +  ++ T+   G +CV +   ++E+I+ EAH S++SIH G  KMY D
Sbjct: 1125 EIKGWAQNNKTEYQTSNNGTIVVNGRVCVPNDRALKEEILREAHQSKFSIHPGSNKMYRD 1184

Query: 524  FK*IYWWNDMKRNVVDIVAKCLNCQQVKVKY*RSSGLAPNIDILV*K*DITNIDFLTGLP 703
             K  Y W  MK++V   VAKC  CQ VK ++   SGL  N+ I   K D   +DF+TGLP
Sbjct: 1185 LKRYYHWVGMKKDVARWVAKCPTCQLVKAEHQVPSGLLQNLPIPEWKWDHITMDFVTGLP 1244

Query: 704  CSA*M-HDLISVIVDRLTKSAHFL*IKTIDSTEDQAQLYIRKIVKLHNIPVSIILDCDTQ 880
                  H+ + V+VDRLTKSAHF+ I   D  E  A+ YI +IV+LH IPVSI+ D DT+
Sbjct: 1245 TGIKSKHNAVWVVVDRLTKSAHFMAISDKDGAEIIAEKYIDEIVRLHGIPVSIVSDRDTR 1304

Query: 881  FTAFFWKSLKKEFGIKVNLSTTFQPQTDGHVERTIHTL 994
            FT+ FWK+ +K  G +VNLST + PQTD   ERTI TL
Sbjct: 1305 FTSKFWKAFQKALGTRVNLSTAYHPQTDEQSERTIQTL 1342


>gb|EOY00082.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
          Length = 1515

 Score =  232 bits (592), Expect = 1e-58
 Identities = 138/341 (40%), Positives = 196/341 (57%), Gaps = 12/341 (3%)
 Frame = +2

Query: 8    NYLYEIHINIYTNHKSLQYIFK*RELNLS*MRWLKLIKDYNVDVLYHPRKANMVVNYPSI 187
            +YLY  H  I+T+HKSL+Y+   +ELNL   RWL+LIKDY++ + YH  KAN+V +  S 
Sbjct: 928  HYLYGEHCRIFTDHKSLKYLLTQKELNLRQRRWLELIKDYDLVIDYHLGKANVVADALSR 987

Query: 188  RYMRSQAHIKEDNRTMIKEICRLASLGV*FLDSEDSGIIV*N*SESSLLAVV-------- 343
            +   S A ++         +  + SLGV   + ED  ++       SLL  +        
Sbjct: 988  KSSSSLAALQS---CYFPALIEMKSLGVQLRNGEDGSLLANFIVRPSLLNQIKDIQRSDD 1044

Query: 344  --RRSI--LVIPIYCS*KVGDDSTLRYQGSLCVLDANGIREQIMAEAHTSRYSIHIGFTK 511
              R+ I  L        + G+D+ L ++  +CV + N +R+ IM EAH+S Y++H G TK
Sbjct: 1045 ELRKEIQKLTDGGVSEFRFGEDNVLMFKDRVCVPEGNQLRQAIMEEAHSSAYALHPGSTK 1104

Query: 512  MYHDFK*IYWWNDMKRNVVDIVAKCLNCQQVKVKY*RSSGLAPNIDILV*K*DITNIDFL 691
            MY   +  YWW  MKR+V + +AKCL CQQVK ++ R      ++ +   K +   +DF+
Sbjct: 1105 MYRTIRENYWWPGMKRDVAEFIAKCLVCQQVKAEHQRLVDTLQSLPVPEWKWEHVTMDFI 1164

Query: 692  TGLPCSA*MHDLISVIVDRLTKSAHFL*IKTIDSTEDQAQLYIRKIVKLHNIPVSIILDC 871
             GLP +    D I VIVDRLTKSAHFL + +  S E  AQLYI +IV+LH + VSI+ D 
Sbjct: 1165 LGLPRTQRGKDAIWVIVDRLTKSAHFLAVHSTYSIEKLAQLYIDEIVRLHGVSVSIVSDR 1224

Query: 872  DTQFTAFFWKSLKKEFGIKVNLSTTFQPQTDGHVERTIHTL 994
            D +FT+ FW   ++  G K+  ST F PQTDG  ERTI TL
Sbjct: 1225 DPRFTSRFWPKFQEALGTKLKFSTAFHPQTDGQSERTIQTL 1265


>emb|CAC44142.1| putative polyprotein [Cicer arietinum]
          Length = 655

 Score =  231 bits (590), Expect = 3e-58
 Identities = 131/339 (38%), Positives = 203/339 (59%), Gaps = 10/339 (2%)
 Frame = +2

Query: 8    NYLYEIHINIYTNHKSLQYIFK*RELNLS*MRWLKLIKDYNVDVLYHPRKANMVVNYPSI 187
            +YLY     ++++HKSL+Y+F  +ELN+   RW++ +KD++  + YHP KAN+V +  S 
Sbjct: 171  HYLYGCTFTVFSDHKSLKYLFDQKELNMRQRRWIETLKDFDFTLQYHPGKANVVADALSR 230

Query: 188  RYMRSQAHIKEDNRTMIKEICRLASLGV*F--------LDSEDSGII--V*N*SESSLLA 337
            R +   + I    + +  E  R   L V F        +    SG++  + N S+  +L 
Sbjct: 231  RSVSVSSLIMARQQELW-EAFRDLHLNVEFAPGILKFGMIKISSGLLEDIAN-SQDDVLI 288

Query: 338  VVRRSILVIPIYCS*KVGDDSTLRYQGSLCVLDANGIREQIMAEAHTSRYSIHIGFTKMY 517
              +R+++V       K+G D+ LR  G +CV +   +R+ I+ EAH S+ SIH G TKMY
Sbjct: 289  QEKRNLIVQGKTTEFKIGADNVLRCNGRICVPEITAMRKTILEEAHKSKLSIHPGATKMY 348

Query: 518  HDFK*IYWWNDMKRNVVDIVAKCLNCQQVKVKY*RSSGLAPNIDILV*K*DITNIDFLTG 697
             D +  YWW  MK++V + V+ CL CQ+ KV++ R +G+   +DI   K D  ++DF+TG
Sbjct: 349  QDLRQNYWWPGMKKHVAEYVSTCLTCQKAKVEHQRPAGMLQPLDIPEWKWDSISMDFITG 408

Query: 698  LPCSA*MHDLISVIVDRLTKSAHFL*IKTIDSTEDQAQLYIRKIVKLHNIPVSIILDCDT 877
            LP +   +D I VIVDRLTKSAHFL ++T    +   ++YI +IV+LH +P SI+ D D 
Sbjct: 409  LPKTRRKNDSIWVIVDRLTKSAHFLPVRTTYKVDQLTEIYIAEIVRLHGVPSSIVSDRDP 468

Query: 878  QFTAFFWKSLKKEFGIKVNLSTTFQPQTDGHVERTIHTL 994
            +FT+ FW +L +  G K+ LS+ + PQTDG  ERT  +L
Sbjct: 469  KFTSHFWGALHEALGTKLRLSSAYHPQTDGQTERTNQSL 507


>gb|EOY26510.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
          Length = 1290

 Score =  228 bits (580), Expect = 4e-57
 Identities = 136/341 (39%), Positives = 193/341 (56%), Gaps = 12/341 (3%)
 Frame = +2

Query: 8    NYLYEIHINIYTNHKSLQYIFK*RELNLS*MRWLKLIKDYNVDVLYHPRKANMVVNYPSI 187
            +YLY     I+ +HKSL+Y+   +ELNL   RWL+LIKDY++ + YHP KAN+V +  S 
Sbjct: 730  HYLYGERCRIFFDHKSLKYLLTQKELNLRQRRWLELIKDYDLVIDYHPGKANVVTDALSR 789

Query: 188  RYMRSQAHIKEDNRTMIKEICRLASLGV*FLDSEDSGIIV*N*SESSLLAVVRR------ 349
            +   S A ++     M+ E   + SLG+   + ED  ++       SLL  +R       
Sbjct: 790  KSSSSLATLRSSYFPMLLE---MKSLGIQLNNGEDGTLLASFVVRPSLLNQIRELQKFDD 846

Query: 350  ------SILVIPIYCS*KVGDDSTLRYQGSLCVLDANGIREQIMAEAHTSRYSIHIGFTK 511
                    L        ++ DD TL  +  +CV   + +R  I+ EAH+S Y++H G TK
Sbjct: 847  WLKQEVQKLQDGEASEFRLSDDGTLMLRDRICVPKDDQLRRAILEEAHSSAYALHPGSTK 906

Query: 512  MYHDFK*IYWWNDMKRNVVDIVAKCLNCQQVKVKY*RSSGLAPNIDILV*K*DITNIDFL 691
            MY   K  YWW  MKR++ + VAKCL CQQ+K ++ +SSG    + I   K +   +DF+
Sbjct: 907  MYQTIKESYWWPGMKRDIAEFVAKCLICQQIKAEHQKSSGTLQPLPIPEWKWEHVTMDFV 966

Query: 692  TGLPCSA*MHDLISVIVDRLTKSAHFL*IKTIDSTEDQAQLYIRKIVKLHNIPVSIILDC 871
             GLP +    D I VI+ RLTKSAHFL I +  S E  A+LYI ++V+LH +PVSI+ D 
Sbjct: 967  LGLPRTQSGKDAIWVIMGRLTKSAHFLAIHSTYSIERLARLYIDEVVRLHGVPVSIVSDR 1026

Query: 872  DTQFTAFFWKSLKKEFGIKVNLSTTFQPQTDGHVERTIHTL 994
            D +FT+ FW   ++  G K+  ST F PQ DG  ERTI TL
Sbjct: 1027 DPRFTSRFWPKFQEALGTKLRFSTAFHPQIDGQSERTIQTL 1067


>gb|EOY14138.1| Uncharacterized protein TCM_033423 [Theobroma cacao]
          Length = 809

 Score =  227 bits (579), Expect = 5e-57
 Identities = 136/341 (39%), Positives = 192/341 (56%), Gaps = 12/341 (3%)
 Frame = +2

Query: 8    NYLYEIHINIYTNHKSLQYIFK*RELNLS*MRWLKLIKDYNVDVLYHPRKANMVVNYPSI 187
            +YLY     I+++HKSL+Y+   +ELNL   RWL+LIKDY++ + YHP K N+V +  S 
Sbjct: 446  HYLYGERCRIFSDHKSLKYLLTQKELNLRQRRWLELIKDYDLVIDYHPGKENVVADALSR 505

Query: 188  RYMRSQAHIKEDNRTMIKEICRLASLGV*FLDSEDSGIIV*N*SESSLLAVVRR------ 349
            +   S A ++    +M+ E   + SLG+   + ED  ++       SLL  +R       
Sbjct: 506  KSSSSLATLQSSYFSMLLE---MKSLGIQLNNGEDGTLLASFVVRPSLLNQIRELQKSDD 562

Query: 350  ------SILVIPIYCS*KVGDDSTLRYQGSLCVLDANGIREQIMAEAHTSRYSIHIGFTK 511
                    L        ++ DD     +  +CV   + +R  I+ EAH+S Y++H G TK
Sbjct: 563  WLKQEVQKLQDGEASEFRLNDDGIFMLRDRICVPKDDQLRRAILEEAHSSAYALHPGSTK 622

Query: 512  MYHDFK*IYWWNDMKRNVVDIVAKCLNCQQVKVKY*RSSGLAPNIDILV*K*DITNIDFL 691
            MY   K  YWW  MKR++ + VAKCL CQQ+K ++ + SG    + I   K +   +DF+
Sbjct: 623  MYRTIKESYWWPGMKRDIAEFVAKCLTCQQIKAEHQKPSGTLQPLLIPEWKWEHVTMDFV 682

Query: 692  TGLPCSA*MHDLISVIVDRLTKSAHFL*IKTIDSTEDQAQLYIRKIVKLHNIPVSIILDC 871
             GLP +    D I VIVDRLTKSAHFL I +  S E  A+LYI +IV+LH +PVSI+ D 
Sbjct: 683  LGLPRTQSGKDAIWVIVDRLTKSAHFLAIHSTYSIERLARLYIDEIVRLHGVPVSIVSDR 742

Query: 872  DTQFTAFFWKSLKKEFGIKVNLSTTFQPQTDGHVERTIHTL 994
            D +FT+ FW    +  G K+  ST F PQTDG  ERTI TL
Sbjct: 743  DPRFTSRFWPKFHEALGTKLRFSTAFHPQTDGQSERTIQTL 783


>gb|ABA97771.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 2174

 Score =  221 bits (562), Expect = 4e-55
 Identities = 131/337 (38%), Positives = 193/337 (57%), Gaps = 12/337 (3%)
 Frame = +2

Query: 5    HNYLYEIHINIYTNHKSLQYIFK*RELNLS*MRWLKLIKDYNVDVLYHPRKANMVVNYPS 184
            H+YL+     +YT+HKSL+YIF   +LN+   RWL+LIKDY++ + YHP KAN+V +  S
Sbjct: 1587 HHYLFGTRTEVYTDHKSLKYIFTQPDLNMRQRRWLELIKDYDMGIHYHPGKANVVADALS 1646

Query: 185  IRYMRSQAHIKEDNRTMIKEICRLASLGV*FLDSEDSGIIV*N*SESSLLAVVRRSILVI 364
             +   +    ++    + KE  RL +LG+      D G +    ++ +L+  VR + +  
Sbjct: 1647 RKGYCNATEGRQLPLELCKEFERL-NLGI-----VDRGFVAALEAKPTLIDQVREAQIND 1700

Query: 365  PIYCS*KVG------------DDSTLRYQGSLCVLDANGIREQIMAEAHTSRYSIHIGFT 508
            P     K              +  T+     +CV D   +++ I+ EAH + YSIH G T
Sbjct: 1701 PDIQEIKKNMRRGKAIGFLEDEHGTVWLGERICVPDNKDLKDAILKEAHDTLYSIHPGST 1760

Query: 509  KMYHDFK*IYWWNDMKRNVVDIVAKCLNCQQVKVKY*RSSGLAPNIDILV*K*DITNIDF 688
            KMY D K  +WW  MKR + + VA C  CQ+VK ++ + +GL   + I   K +   +DF
Sbjct: 1761 KMYQDLKERFWWASMKREIAEYVAVCDVCQRVKAEHQKPAGLLQPLKIPEWKWEEIGMDF 1820

Query: 689  LTGLPCSA*MHDLISVIVDRLTKSAHFL*IKTIDSTEDQAQLYIRKIVKLHNIPVSIILD 868
            +TGLP ++  HD I VIVDRLTK AHF+ +KT  S    A+LY+ +IV LH +P  I+ D
Sbjct: 1821 ITGLPRTSSGHDSIWVIVDRLTKVAHFIPVKTTYSGSRLAELYMARIVCLHGVPKKIVSD 1880

Query: 869  CDTQFTAFFWKSLKKEFGIKVNLSTTFQPQTDGHVER 979
              +QFT+ FWK L++E G K+N ST + PQTDG  ER
Sbjct: 1881 RGSQFTSNFWKKLQEEMGSKLNFSTAYHPQTDGQTER 1917


>gb|AAD22153.1|AF061282_6 polyprotein [Sorghum bicolor]
          Length = 1484

 Score =  220 bits (560), Expect = 8e-55
 Identities = 130/332 (39%), Positives = 192/332 (57%), Gaps = 8/332 (2%)
 Frame = +2

Query: 8    NYLYEIHINIYTNHKSLQYIFK*RELNLS*MRWLKLIKDYNVDVLYHPRKANMVVNYPSI 187
            +YL     +IYT+HKSL+YIF   +LNL   RWL+LIKDY+++V YHP KAN+V +  S 
Sbjct: 911  HYLIGHKSDIYTDHKSLKYIFTQTDLNLRQRRWLELIKDYDLEVHYHPGKANVVADALSR 970

Query: 188  RYMRSQAHIKEDNRTMIKEICRLASLGV*FLDSE-------DSGIIV*N*SESSLLAVVR 346
            +   ++     ++  +  E   L +LG+    +E       +  I+     +  L  + +
Sbjct: 971  KKYANELQATPESEELCAEFAYL-NLGMVVNATEIEITPTLEEEIVKGQLEDEKLKEIAQ 1029

Query: 347  RSIL-VIPIYCS*KVGDDSTLRYQGSLCVLDANGIREQIMAEAHTSRYSIHIGFTKMYHD 523
              +L   P +   ++ D+  L +   +CV +   IR+ I+ EAH S YSIH G TKMY D
Sbjct: 1030 NVVLGKAPGF---RIDDNGVLWFGKRICVPEVKAIRDTILREAHESAYSIHPGSTKMYLD 1086

Query: 524  FK*IYWWNDMKRNVVDIVAKCLNCQQVKVKY*RSSGLAPNIDILV*K*DITNIDFLTGLP 703
             +  YWW  +KR+V + VA C  CQ+VK ++ R +GL   + I   K +   +DF+ GLP
Sbjct: 1087 LRQKYWWYGLKRDVAEYVALCDTCQRVKAEHQRPAGLLQPMKIPEWKWEEVGMDFIVGLP 1146

Query: 704  CSA*MHDLISVIVDRLTKSAHFL*IKTIDSTEDQAQLYIRKIVKLHNIPVSIILDCDTQF 883
             +   +D I VIVDRLTK AHF+ +KT  S +  A+LY+ +IV LH +P  I+ D  TQF
Sbjct: 1147 RTQRGYDSIWVIVDRLTKVAHFIPVKTSYSGDRLAELYMERIVCLHGVPKKIVSDRGTQF 1206

Query: 884  TAFFWKSLKKEFGIKVNLSTTFQPQTDGHVER 979
            T+ FWK++    G K+N ST + PQTDG  ER
Sbjct: 1207 TSHFWKAVHDSLGTKLNFSTAYHPQTDGQTER 1238


>gb|ABB47020.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 989

 Score =  219 bits (559), Expect = 1e-54
 Identities = 130/336 (38%), Positives = 191/336 (56%), Gaps = 12/336 (3%)
 Frame = +2

Query: 8    NYLYEIHINIYTNHKSLQYIFK*RELNLS*MRWLKLIKDYNVDVLYHPRKANMVVNYPSI 187
            +YL+     +YT+HKSL+YIF   +LN+   RWL+LIKDY++ + YHP KAN+V +  S 
Sbjct: 617  HYLFGTRTEVYTDHKSLKYIFTQPDLNMRQRRWLELIKDYDMGIHYHPGKANVVADALSR 676

Query: 188  RYMRSQAHIKEDNRTMIKEICRLASLGV*FLDSEDSGIIV*N*SESSLLAVVRRSILVIP 367
            +   +    +E    + KE  RL  LG+        G +    ++ +L+  VR + +  P
Sbjct: 677  KGYCNATEGRELPLKLCKEFERL-KLGI-----VSRGFVAALEAKPTLIDQVREAQINDP 730

Query: 368  IYCS*KVG------------DDSTLRYQGSLCVLDANGIREQIMAEAHTSRYSIHIGFTK 511
                 K              +  T+R    +CV D   +++ I+ EAH + YSIH G TK
Sbjct: 731  DIQEIKKNMRRGKAIGFLEDEQGTVRLGERICVPDNKNLKDAILKEAHDTLYSIHPGSTK 790

Query: 512  MYHDFK*IYWWNDMKRNVVDIVAKCLNCQQVKVKY*RSSGLAPNIDILV*K*DITNIDFL 691
            MY D K  +WW  MKR + + +A C  CQ+VK ++ + +GL   + I   K +   +DF+
Sbjct: 791  MYQDLKERFWWASMKREIAEYIAVCDVCQRVKAEHQKPAGLLQPLKIPEWKWEEIGMDFI 850

Query: 692  TGLPCSA*MHDLISVIVDRLTKSAHFL*IKTIDSTEDQAQLYIRKIVKLHNIPVSIILDC 871
            TGLP ++  HD I VIVDRLTK AHF+ +KT  S    A+LY+ +IV LH +P  I+ D 
Sbjct: 851  TGLPRTSSGHDSIWVIVDRLTKVAHFIPVKTTYSGSRLAELYMARIVCLHGVPKKIVSDR 910

Query: 872  DTQFTAFFWKSLKKEFGIKVNLSTTFQPQTDGHVER 979
             +QFT+ FWK L++E G K+N ST + PQTDG  ER
Sbjct: 911  GSQFTSNFWKKLQEEMGSKLNFSTAYHPQTDGQTER 946


>emb|CAE05310.2| OSJNBa0056L23.8 [Oryza sativa Japonica Group]
          Length = 1472

 Score =  219 bits (558), Expect = 1e-54
 Identities = 131/336 (38%), Positives = 193/336 (57%), Gaps = 12/336 (3%)
 Frame = +2

Query: 8    NYLYEIHINIYTNHKSLQYIFK*RELNLS*MRWLKLIKDYNVDVLYHPRKANMVVNYPSI 187
            +YL+     +YT+HKSL+YIF   +LN+   RWL+LIKDY++ + YHP KAN+V + PS 
Sbjct: 886  HYLFGTRTEMYTDHKSLKYIFTQPDLNMRQRRWLELIKDYDMGIHYHPGKANVVADAPSR 945

Query: 188  RYMRSQAHIKEDNRTMIKEICRLASLGV*FLDSEDSGIIV*N*SESSLLAVVRRSILVIP 367
            +   +    ++    + KE  RL +LG+      + G +V   ++ +L+  VR + +  P
Sbjct: 946  KGYCNATEGRQLPLELCKEFERL-NLGI-----VNRGFVVALEAKPTLIDQVREAQINDP 999

Query: 368  IYCS*KVG------------DDSTLRYQGSLCVLDANGIREQIMAEAHTSRYSIHIGFTK 511
                 K              +  T+     +CV D   +++ I+ EA  + YSIH G TK
Sbjct: 1000 DIQEIKKNMRRGKAIGFLEDEQGTVWLGERICVPDNKDLKDAILKEARDTLYSIHPGSTK 1059

Query: 512  MYHDFK*IYWWNDMKRNVVDIVAKCLNCQQVKVKY*RSSGLAPNIDILV*K*DITNIDFL 691
            MY D K  +WW  MKR + + VA C  CQQVK ++ + +GL   + I   K +   +DF+
Sbjct: 1060 MYQDLKERFWWASMKREIAEYVAVCDVCQQVKAEHQKPAGLLQPLKIPEWKWEEIGMDFI 1119

Query: 692  TGLPCSA*MHDLISVIVDRLTKSAHFL*IKTIDSTEDQAQLYIRKIVKLHNIPVSIILDC 871
            TGLP ++  HD I VIVDRLTK AHF+ +KT  S    A+LY+ +IV LH +P  I+ D 
Sbjct: 1120 TGLPRTSSGHDSIWVIVDRLTKVAHFIPVKTTYSGSRLAELYMARIVCLHGVPKKIVSDR 1179

Query: 872  DTQFTAFFWKSLKKEFGIKVNLSTTFQPQTDGHVER 979
             +QFT+ FWK L++E G K+N ST + PQTDG  ER
Sbjct: 1180 GSQFTSNFWKKLQEEMGSKLNFSTAYHPQTDGQTER 1215