BLASTX nr result

ID: Atropa21_contig00037916 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atropa21_contig00037916
         (1288 letters)

Database: nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006362709.1| PREDICTED: putative ribonuclease H protein A...    73   2e-10
ref|XP_006347119.1| PREDICTED: putative ribonuclease H protein A...    70   2e-09
ref|XP_006337991.1| PREDICTED: putative ribonuclease H protein A...    70   2e-09
ref|XP_006355601.1| PREDICTED: putative ribonuclease H protein A...    69   4e-09
ref|XP_006352964.1| PREDICTED: putative ribonuclease H protein A...    69   4e-09
ref|XP_006350483.1| PREDICTED: putative ribonuclease H protein A...    67   2e-08
ref|XP_006354966.1| PREDICTED: putative ribonuclease H protein A...    66   4e-08
ref|XP_006352585.1| PREDICTED: uncharacterized protein LOC102588...    64   1e-07
ref|XP_006345709.1| PREDICTED: putative ribonuclease H protein A...    61   9e-07
ref|XP_006353602.1| PREDICTED: putative ribonuclease H protein A...    61   1e-06
emb|CAN75374.1| hypothetical protein VITISV_029152 [Vitis vinifera]    47   2e-06
ref|XP_006356729.1| PREDICTED: putative ribonuclease H protein A...    60   3e-06
ref|XP_006345710.1| PREDICTED: putative ribonuclease H protein A...    59   3e-06
emb|CAN78577.1| hypothetical protein VITISV_020585 [Vitis vinifera]    59   6e-06

>ref|XP_006362709.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
           tuberosum]
          Length = 217

 Score = 73.2 bits (178), Expect = 2e-10
 Identities = 39/104 (37%), Positives = 56/104 (53%)
 Frame = -2

Query: 660 KAETISHLFLHCPVTVLLTILLIRFGSYFGTFWALNGPCLVIQLIF*RCSSIGTNMSWKI 481
           + ET++HLFLHC  T  L  + I+        W   G  + +   + R  + G N   K 
Sbjct: 102 QVETVNHLFLHCKWTDQLWQMFIQKRKIK---WTKPGSIIEVLQCWNRDGNAGKNE--KR 156

Query: 480 WNKIPACI*WIVWRERKKRSSEDSYNSMLKIKANCICLYYYSCK 349
           W  +PACI W +W+ER +R  E   N++ KIK NC+ LYY+ CK
Sbjct: 157 WRIVPACIWWTIWKERNQRCFEGKQNNIQKIKTNCLGLYYFWCK 200



 Score = 67.8 bits (164), Expect = 9e-09
 Identities = 35/89 (39%), Positives = 49/89 (55%)
 Frame = -1

Query: 787 WKSKAPCKVSYFTWLVAKEAALSHDNLRKRWLLLCSRCHLWNKGRNHKXXXXXXXXXXXX 608
           W+++ P KV+YFTWL+AK+A L+H+NL KR   L S C+L  +                 
Sbjct: 59  WRTEIPYKVNYFTWLLAKQAVLTHENLNKRKPNLRSSCYLCEE------QVETVNHLFLH 112

Query: 607 XXLTDQIWQLFWNFLGIKWTMPGNTADFL 521
              TDQ+WQ+F     IKWT PG+  + L
Sbjct: 113 CKWTDQLWQMFIQKRKIKWTKPGSIIEVL 141


>ref|XP_006347119.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
           tuberosum]
          Length = 450

 Score = 69.7 bits (169), Expect = 2e-09
 Identities = 36/89 (40%), Positives = 47/89 (52%)
 Frame = -1

Query: 787 WKSKAPCKVSYFTWLVAKEAALSHDNLRKRWLLLCSRCHLWNKGRNHKXXXXXXXXXXXX 608
           WK + P KVS F WL+AKEAAL+ DN+ KR + LCSRC L  +                 
Sbjct: 292 WKCRIPHKVSCFIWLLAKEAALTQDNVMKRGITLCSRCFLCGE------TLETVNHLFLH 345

Query: 607 XXLTDQIWQLFWNFLGIKWTMPGNTADFL 521
              T Q+W++F +  GI WTMP    + L
Sbjct: 346 CKYTRQLWRIFLSLKGISWTMPRRVTEAL 374


>ref|XP_006337991.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
           tuberosum]
          Length = 556

 Score = 69.7 bits (169), Expect = 2e-09
 Identities = 36/89 (40%), Positives = 47/89 (52%)
 Frame = -1

Query: 787 WKSKAPCKVSYFTWLVAKEAALSHDNLRKRWLLLCSRCHLWNKGRNHKXXXXXXXXXXXX 608
           WK + P KVS F WL+AKEAAL+ DN+ KR + LCSRC L  +                 
Sbjct: 398 WKCRIPHKVSCFIWLLAKEAALTQDNVMKRGITLCSRCFLCGE------TLETVNHLFLH 451

Query: 607 XXLTDQIWQLFWNFLGIKWTMPGNTADFL 521
              T Q+W++F +  GI WTMP    + L
Sbjct: 452 CKYTRQLWRIFLSLKGISWTMPRRVTEAL 480


>ref|XP_006355601.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
           tuberosum]
          Length = 399

 Score = 68.9 bits (167), Expect = 4e-09
 Identities = 37/92 (40%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
 Frame = -1

Query: 787 WKSKAPCKVSYFTWLVAKEAALSHDNLRKRWLLLCSRCHLWNKGR---NHKXXXXXXXXX 617
           WK + P KVS F WL+AKEAAL+ DN+ KR + LCSRC L  +     NH          
Sbjct: 241 WKGRIPYKVSCFIWLLAKEAALTQDNVMKRGITLCSRCFLCGETSETVNH---------L 291

Query: 616 XXXXXLTDQIWQLFWNFLGIKWTMPGNTADFL 521
                 T Q+W++F +  GI W MP    + L
Sbjct: 292 FLHCKFTQQLWRVFLSLKGISWAMPRRITEAL 323



 Score = 58.5 bits (140), Expect = 6e-06
 Identities = 36/105 (34%), Positives = 49/105 (46%)
 Frame = -2

Query: 666 GTKAETISHLFLHCPVTVLLTILLIRFGSYFGTFWALNGPCLVIQLIF*RCSSIGTNMSW 487
           G  +ET++HLFLHC  T  L  + +   S  G  WA+          +     +  + + 
Sbjct: 282 GETSETVNHLFLHCKFTQQLWRVFL---SLKGISWAMPRRITEALKSWEEAGVLAKDRTR 338

Query: 486 KIWNKIPACI*WIVWRERKKRSSEDSYNSMLKIKANCICLYYYSC 352
             W  IPA I W  W+ER  R  E   NSM K+K NCI L  + C
Sbjct: 339 --WRIIPASIWWATWKERNSRCFESVENSMQKVKLNCILLLCFWC 381


>ref|XP_006352964.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
           tuberosum]
          Length = 323

 Score = 68.9 bits (167), Expect = 4e-09
 Identities = 37/92 (40%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
 Frame = -1

Query: 787 WKSKAPCKVSYFTWLVAKEAALSHDNLRKRWLLLCSRCHLWNKGR---NHKXXXXXXXXX 617
           WK + P KVS F WL+AKEAAL+ DN+ KR + LCSRC L  +     NH          
Sbjct: 165 WKGRIPYKVSCFIWLLAKEAALTQDNVMKRGITLCSRCFLCGETSETVNH---------L 215

Query: 616 XXXXXLTDQIWQLFWNFLGIKWTMPGNTADFL 521
                 T Q+W++F +  GI W MP    + L
Sbjct: 216 FLHCKFTQQLWRVFLSLKGISWAMPRRITEAL 247



 Score = 58.5 bits (140), Expect = 6e-06
 Identities = 36/105 (34%), Positives = 49/105 (46%)
 Frame = -2

Query: 666 GTKAETISHLFLHCPVTVLLTILLIRFGSYFGTFWALNGPCLVIQLIF*RCSSIGTNMSW 487
           G  +ET++HLFLHC  T  L  + +   S  G  WA+          +     +  + + 
Sbjct: 206 GETSETVNHLFLHCKFTQQLWRVFL---SLKGISWAMPRRITEALKSWEEAGVLAKDRTR 262

Query: 486 KIWNKIPACI*WIVWRERKKRSSEDSYNSMLKIKANCICLYYYSC 352
             W  IPA I W  W+ER  R  E   NSM K+K NCI L  + C
Sbjct: 263 --WRIIPASIWWATWKERNSRCFESVENSMQKVKLNCILLLCFWC 305


>ref|XP_006350483.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
           tuberosum]
          Length = 258

 Score = 67.0 bits (162), Expect = 2e-08
 Identities = 35/89 (39%), Positives = 44/89 (49%)
 Frame = -1

Query: 787 WKSKAPCKVSYFTWLVAKEAALSHDNLRKRWLLLCSRCHLWNKGRNHKXXXXXXXXXXXX 608
           WK K P KV  FTWLV KEA L+ +NL KR + +C RC    +                 
Sbjct: 176 WKVKIPYKVVVFTWLVVKEAVLTQENLMKRGIQMCPRCCFCEQ------VAETINHLFLH 229

Query: 607 XXLTDQIWQLFWNFLGIKWTMPGNTADFL 521
             +  Q+W LF +F GI WT+PG   D L
Sbjct: 230 CKVVGQLWNLFTSFRGISWTVPGENRDRL 258


>ref|XP_006354966.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
           tuberosum]
          Length = 397

 Score = 65.9 bits (159), Expect = 4e-08
 Identities = 34/89 (38%), Positives = 44/89 (49%)
 Frame = -1

Query: 787 WKSKAPCKVSYFTWLVAKEAALSHDNLRKRWLLLCSRCHLWNKGRNHKXXXXXXXXXXXX 608
           WK K P KV  FTWLV KEA L+ +NL KR + +C RC    +                 
Sbjct: 239 WKVKIPYKVVVFTWLVVKEAVLTQENLMKRGIQMCPRCCFCEQ------VAETINHLFLH 292

Query: 607 XXLTDQIWQLFWNFLGIKWTMPGNTADFL 521
             +  ++W LF +F GI WT+PG T   L
Sbjct: 293 CKVVGKLWNLFTSFRGISWTVPGRTGQAL 321



 Score = 61.2 bits (147), Expect = 9e-07
 Identities = 40/103 (38%), Positives = 54/103 (52%), Gaps = 1/103 (0%)
 Frame = -2

Query: 657 AETISHLFLHCPVTVLLTILLIRFGSYFGTFWALNGPCLVIQLIF*RCSSIGTNMS-WKI 481
           AETI+HLFLHC V   L  L   F S+ G  W + G        +    S  T+ S WKI
Sbjct: 283 AETINHLFLHCKVVGKLWNL---FTSFRGISWTVPGRTGQALESWNMEGSGSTDKSRWKI 339

Query: 480 WNKIPACI*WIVWRERKKRSSEDSYNSMLKIKANCICLYYYSC 352
              +PA I W +W+ER  R+ ++  + + KIK NCI  + Y C
Sbjct: 340 ---VPAVIWWTIWKERNSRNFDNKSSPLHKIKMNCIITFCYWC 379


>ref|XP_006352585.1| PREDICTED: uncharacterized protein LOC102588593 [Solanum tuberosum]
          Length = 255

 Score = 63.9 bits (154), Expect = 1e-07
 Identities = 39/108 (36%), Positives = 54/108 (50%), Gaps = 2/108 (1%)
 Frame = -2

Query: 666 GTKAETISHLFLHCPVTVLLTILLIRFGSYFGTFWALNGPCLVIQLIF*RCSSIGTNMSW 487
           G +AE  SHLFLHC     L  + +      G  W +  P   ++L+  +   +G     
Sbjct: 137 GEEAEVNSHLFLHCRTAANLWNMFL---CILGVNWVM--PKTTLELLR-QWEGVGRRRRS 190

Query: 486 KI--WNKIPACI*WIVWRERKKRSSEDSYNSMLKIKANCICLYYYSCK 349
           K   W  IPACI W +W+ER +RS +   NS  KIK N + L Y+ CK
Sbjct: 191 KEDWWKCIPACIWWTLWKERNERSHDGKLNSTQKIKMNSLSLLYFWCK 238



 Score = 58.5 bits (140), Expect = 6e-06
 Identities = 28/89 (31%), Positives = 43/89 (48%)
 Frame = -1

Query: 787 WKSKAPCKVSYFTWLVAKEAALSHDNLRKRWLLLCSRCHLWNKGRNHKXXXXXXXXXXXX 608
           WK K P KVS FTWL  ++A L+H+ +++R + +CSRC +  +                 
Sbjct: 96  WKIKIPHKVSGFTWLAIRKACLTHEVIQRRGIQICSRCFMCGE------EAEVNSHLFLH 149

Query: 607 XXLTDQIWQLFWNFLGIKWTMPGNTADFL 521
                 +W +F   LG+ W MP  T + L
Sbjct: 150 CRTAANLWNMFLCILGVNWVMPKTTLELL 178


>ref|XP_006345709.1| PREDICTED: putative ribonuclease H protein At1g65750-like isoform
           X1 [Solanum tuberosum]
          Length = 284

 Score = 61.2 bits (147), Expect = 9e-07
 Identities = 35/103 (33%), Positives = 50/103 (48%)
 Frame = -2

Query: 657 AETISHLFLHCPVTVLLTILLIRFGSYFGTFWALNGPCLVIQLIF*RCSSIGTNMSWKIW 478
           +ET SHLFLHC  T  +  L +   +     W +      +   + R  S  +   W  W
Sbjct: 170 SETNSHLFLHCNYTAQIWNLFLNISNLN---WTMPERTSNVLKSWVRRGSTKSQKRW--W 224

Query: 477 NKIPACI*WIVWRERKKRSSEDSYNSMLKIKANCICLYYYSCK 349
             IP+CI W VW+ER  R  ++  NS+ K+K NCI    + CK
Sbjct: 225 RLIPSCIWWSVWKERNSRCFDNRSNSIHKVKWNCIVSLLFLCK 267



 Score = 58.2 bits (139), Expect = 7e-06
 Identities = 33/89 (37%), Positives = 40/89 (44%)
 Frame = -1

Query: 787 WKSKAPCKVSYFTWLVAKEAALSHDNLRKRWLLLCSRCHLWNKGRNHKXXXXXXXXXXXX 608
           WK   P KV  FTWLV K A L+ + L+K+   L  RC L N                  
Sbjct: 126 WKGDIPTKVKCFTWLVIKRACLTQEVLQKKGRQLVPRCFLCN------LTSETNSHLFLH 179

Query: 607 XXLTDQIWQLFWNFLGIKWTMPGNTADFL 521
              T QIW LF N   + WTMP  T++ L
Sbjct: 180 CNYTAQIWNLFLNISNLNWTMPERTSNVL 208


>ref|XP_006353602.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
           tuberosum]
          Length = 517

 Score = 60.8 bits (146), Expect = 1e-06
 Identities = 36/103 (34%), Positives = 50/103 (48%)
 Frame = -2

Query: 657 AETISHLFLHCPVTVLLTILLIRFGSYFGTFWALNGPCLVIQLIF*RCSSIGTNMSWKIW 478
           +ET SHLFLHC  T  +  L +   S     W +      +   + R  S  +   W  W
Sbjct: 403 SETNSHLFLHCNYTAQIWNLFL---SISNLNWTMPERTSNVLKSWVRRGSTKSQKRW--W 457

Query: 477 NKIPACI*WIVWRERKKRSSEDSYNSMLKIKANCICLYYYSCK 349
             IP+CI W VW+ER  R  ++  NS+ K+K NCI    + CK
Sbjct: 458 RLIPSCIWWSVWKERNNRCFDNRSNSIHKVKWNCIVSLLFWCK 500


>emb|CAN75374.1| hypothetical protein VITISV_029152 [Vitis vinifera]
          Length = 655

 Score = 47.4 bits (111), Expect(2) = 2e-06
 Identities = 25/95 (26%), Positives = 45/95 (47%)
 Frame = -2

Query: 654 ETISHLFLHCPVTVLLTILLIRFGSYFGTFWALNGPCLVIQLIF*RCSSIGTNMSWKIWN 475
           ETI+H+ +HCP   +L  L+    + F   W L     V  ++     S       KIW 
Sbjct: 539 ETINHILIHCPKAKVLWNLMF---TMFRVNWVLQ--LTVKDILLGWSDSFVDKKRGKIWR 593

Query: 474 KIPACI*WIVWRERKKRSSEDSYNSMLKIKANCIC 370
             P C+ W +W+ R + + ++   S+ ++K + +C
Sbjct: 594 AAPLCLFWTMWKARNRIAFDNEALSIQRLKTSFVC 628



 Score = 32.3 bits (72), Expect(2) = 2e-06
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -1

Query: 787 WKSKAPCKVSYFTWLVAKEAALSHDNLRKRWLLLCSRCHL 668
           W    P KV +F W  +    L+ D+L++R   L ++C L
Sbjct: 494 WSPCVPTKVGFFAWEASWGKVLTQDHLKRRGWSLANKCFL 533


>ref|XP_006356729.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
           tuberosum]
          Length = 330

 Score = 59.7 bits (143), Expect = 3e-06
 Identities = 33/80 (41%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
 Frame = -1

Query: 787 WKSKAPCKVSYFTWLVAKEAALSHDNLRKRWLLLCSRCHLWNKGR---NHKXXXXXXXXX 617
           WK + P KVS F WL+AKEAAL+ DN+ KR + LCSRC L  +     NH          
Sbjct: 259 WKGRIPYKVSCFIWLLAKEAALTQDNVMKRGITLCSRCFLCGETSETVNH---------L 309

Query: 616 XXXXXLTDQIWQLFWNFLGI 557
                 T Q+W++F +  GI
Sbjct: 310 FLHCKFTQQLWRVFLSLKGI 329


>ref|XP_006345710.1| PREDICTED: putative ribonuclease H protein At1g65750-like isoform
           X2 [Solanum tuberosum]
          Length = 284

 Score = 59.3 bits (142), Expect = 3e-06
 Identities = 35/103 (33%), Positives = 49/103 (47%)
 Frame = -2

Query: 657 AETISHLFLHCPVTVLLTILLIRFGSYFGTFWALNGPCLVIQLIF*RCSSIGTNMSWKIW 478
           +ET SHLFLHC  T  +  L +   +   T      P     ++       GT    + W
Sbjct: 170 SETNSHLFLHCNYTAQIWNLFLSISNLNWTM-----PERTSNVLKSWVRRGGTKSQKRWW 224

Query: 477 NKIPACI*WIVWRERKKRSSEDSYNSMLKIKANCICLYYYSCK 349
             IP+CI W VW+ER  R  ++  NS+ K+K NCI    + CK
Sbjct: 225 RLIPSCIWWSVWKERNSRCFDNRSNSIHKVKWNCIVSLLFWCK 267


>emb|CAN78577.1| hypothetical protein VITISV_020585 [Vitis vinifera]
          Length = 1848

 Score = 58.5 bits (140), Expect = 6e-06
 Identities = 37/106 (34%), Positives = 55/106 (51%), Gaps = 1/106 (0%)
 Frame = -2

Query: 660  KAETISHLFLHCPVTVLLTILLIRFGSYFGTFWALNGPCLVIQ-LIF*RCSSIGTNMSWK 484
            K ETI HL LHC  T +L  LL    S FG  W +  PC V + L+  + SS+G     K
Sbjct: 1730 KEETIDHLLLHCSKTRVLWELLF---SLFGVSWVM--PCSVRETLLSWQTSSVGKKHR-K 1783

Query: 483  IWNKIPACI*WIVWRERKKRSSEDSYNSMLKIKANCICLYYYSCKI 346
            +W   P  I W VW+ R + + +D   S+ ++K + +C  +   K+
Sbjct: 1784 VWRAAPLHIFWTVWKARNRLAFKDDVISIQRLKYSFLCSLWSEAKL 1829


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