BLASTX nr result
ID: Atropa21_contig00037848
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Atropa21_contig00037848
(493 letters)
Database: nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006367640.1| PREDICTED: putative ribonuclease H protein A... 60 4e-19
ref|XP_006356603.1| PREDICTED: putative ribonuclease H protein A... 79 8e-13
ref|XP_006358721.1| PREDICTED: uncharacterized protein LOC102596... 77 3e-12
gb|EOY02236.1| Uncharacterized protein TCM_011923 [Theobroma cacao] 49 3e-06
ref|XP_004244918.1| PREDICTED: putative ribonuclease H protein A... 37 6e-06
>ref|XP_006367640.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
tuberosum]
Length = 1035
Score = 59.7 bits (143), Expect(3) = 4e-19
Identities = 28/61 (45%), Positives = 39/61 (63%)
Frame = +1
Query: 307 KSAWDYIRLRGKETDNFKNM*MKGLPLKIFFFTWRCWKFKIPVDDVFKKMNYNTVSRCWC 486
KSA+ IR R +E + + M +KG+P+KI FF WR W+ KI D K+M VS+C+C
Sbjct: 477 KSAYHRIRGRKEEEEWRRYMWIKGMPIKISFFLWRVWRRKIATYDNLKRMKIPVVSKCYC 536
Query: 487 C 489
C
Sbjct: 537 C 537
Score = 43.1 bits (100), Expect(3) = 4e-19
Identities = 19/35 (54%), Positives = 21/35 (60%)
Frame = +1
Query: 1 IQAR*LVEHQIWWQTKMENSLLWFDNSIGLGSLYF 105
I R VEH IWWQ K NS WFDN G+LY+
Sbjct: 375 ISIREEVEHDIWWQIKAGNSSFWFDNWTRQGALYY 409
Score = 37.0 bits (84), Expect(3) = 4e-19
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = +2
Query: 101 IFLSLGDFYDDRIQNVHQMTENGRWDSSRLAIVLPYDIV*CIIRNITP-LRDKGIDNP*W 277
++ + GD + V N WD ++L +L ++V II NI P ++GID W
Sbjct: 407 LYYTEGDCAQEEELEVQYFITNDGWDETKLKDLLSEEMVEHIILNIRPKTSEEGIDKAWW 466
Query: 278 LLNNGGAFTVR 310
N G FTV+
Sbjct: 467 CGNLTGLFTVK 477
>ref|XP_006356603.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
tuberosum]
Length = 885
Score = 78.6 bits (192), Expect = 8e-13
Identities = 57/173 (32%), Positives = 79/173 (45%), Gaps = 10/173 (5%)
Frame = +1
Query: 1 IQAR*LVEHQIWWQTKMENSLLWFDNSIGLGSLYFFVSWRFL***NSECTSNDREWKVG* 180
I R VEH+IWWQ K NS WFDN G+LY E + + E +V
Sbjct: 405 ISIREEVEHEIWWQIKAGNSSFWFDNWTKQGALYHI-----------EENAKEEEVEVKE 453
Query: 181 F---------KIGNSVTI*HSLMYHKKYYPPKR*RN**SIVASE*WRCIYS-KSAWDYIR 330
F K+ ++++ + + PP + + I++ KSAW R
Sbjct: 454 FCTGEGWDKEKLLQNLSLEMTDHIMENISPPNTLFGNDVVWWMANAQGIFTVKSAWQITR 513
Query: 331 LRGKETDNFKNM*MKGLPLKIFFFTWRCWKFKIPVDDVFKKMNYNTVSRCWCC 489
+ + + + + K LP KI FF WR WK +I DD KKM N VSRCWCC
Sbjct: 514 NKQEVRRDCEVIWNKELPFKINFFMWRVWKRRIATDDNLKKMRINIVSRCWCC 566
>ref|XP_006358721.1| PREDICTED: uncharacterized protein LOC102596481 [Solanum tuberosum]
Length = 1135
Score = 76.6 bits (187), Expect = 3e-12
Identities = 53/179 (29%), Positives = 82/179 (45%), Gaps = 15/179 (8%)
Frame = +1
Query: 1 IQAR*LVEHQIWWQTKMENSLLWFDNSIGLGSLYFFVSWRFL***NSECTSNDREWKVG* 180
I R VEH IWWQ K NS WFDN G+L++ E + + + +V
Sbjct: 781 ITVREEVEHNIWWQIKAGNSSFWFDNWTKQGALWYV----------EENNAVEEKIEVKY 830
Query: 181 F---------KIGNSVTI*HSLMYHKKYYPPKR*RN**SIVASE*W-----RCIYS-KSA 315
F K+ N ++ + + PP + W + I++ KSA
Sbjct: 831 FTHQGAWDREKLLNKISEEMTDYIMESIKPPLE-----EYINDVAWWMGSTQGIFTVKSA 885
Query: 316 WDYIRLRGKETDNFKNM*MKGLPLKIFFFTWRCWKFKIPVDDVFKKMNYNTVSRCWCCT 492
W+ +R + + +++ + K +P K+ FF WR WK +I DD K+M VSRCWCC+
Sbjct: 886 WELMRHKQERRTDYQLIWTKDVPFKMNFFLWRLWKRRIATDDNLKRMKIQIVSRCWCCS 944
>gb|EOY02236.1| Uncharacterized protein TCM_011923 [Theobroma cacao]
Length = 1954
Score = 48.9 bits (115), Expect(2) = 3e-06
Identities = 24/62 (38%), Positives = 34/62 (54%)
Frame = +1
Query: 304 SKSAWDYIRLRGKETDNFKNM*MKGLPLKIFFFTWRCWKFKIPVDDVFKKMNYNTVSRCW 483
++SAW+ IRLR + K +PL I FF WR + IPVD K+ ++ S+C
Sbjct: 1594 TRSAWEAIRLRKSPNVLCSLLWHKSIPLSISFFLWRVFHNWIPVDIRLKEKGFHLASKCI 1653
Query: 484 CC 489
CC
Sbjct: 1654 CC 1655
Score = 27.7 bits (60), Expect(2) = 3e-06
Identities = 16/58 (27%), Positives = 26/58 (44%)
Frame = +2
Query: 137 IQNVHQMTENGRWDSSRLAIVLPYDIV*CIIRNITPLRDKGIDNP*WLLNNGGAFTVR 310
+ VH WD +L + LP ++V I++ P+ D W L + G F+ R
Sbjct: 1540 MSTVHNFFNGHNWDVDKLNLYLPMNLVDEILQ--IPIDRSQDDVAYWSLTSNGEFSTR 1595
>ref|XP_004244918.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
lycopersicum]
Length = 1010
Score = 37.4 bits (85), Expect(3) = 6e-06
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +1
Query: 310 SAWDYIRLRGKETDNFKNM*MKGLPLKIFFFTWRCWKFKIPVDDVFKKMNYN-TVSRCWC 486
SAW+ IR + + + K +P K+ FF W+ + K+P +D MN+ C+C
Sbjct: 640 SAWNIIRKKNISDPINQFIWHKNIPFKVSFFIWKALRNKLPTND--SLMNFGMDEQECYC 697
Query: 487 C 489
C
Sbjct: 698 C 698
Score = 32.3 bits (72), Expect(3) = 6e-06
Identities = 14/54 (25%), Positives = 30/54 (55%)
Frame = +2
Query: 146 VHQMTENGRWDSSRLAIVLPYDIV*CIIRNITPLRDKGIDNP*WLLNNGGAFTV 307
+ ++TENG+W ++ ++P +V I+ + +++ D W L + G FT+
Sbjct: 585 IAELTENGKWKERQVRQLVPPLLVPNILDTVIQAKNEKSDYAIWTLEDKGKFTI 638
Score = 24.6 bits (52), Expect(3) = 6e-06
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +1
Query: 19 VEHQIWWQTKMENSLLWFDNSIGLGSL 99
VE I W N W+DN IG G++
Sbjct: 544 VEKYIKWNIHTGNCSFWWDNWIGDGAV 570