BLASTX nr result
ID: Atropa21_contig00037780
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Atropa21_contig00037780
(519 letters)
Database: nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006359825.1| PREDICTED: pentatricopeptide repeat-containi... 127 2e-27
ref|XP_004237781.1| PREDICTED: pentatricopeptide repeat-containi... 120 2e-25
gb|EXC35161.1| hypothetical protein L484_022712 [Morus notabilis] 74 2e-11
ref|XP_006368282.1| pentatricopeptide repeat-containing family p... 70 2e-10
ref|XP_002326772.1| predicted protein [Populus trichocarpa] 70 2e-10
ref|XP_002272860.1| PREDICTED: pentatricopeptide repeat-containi... 68 1e-09
emb|CAN75780.1| hypothetical protein VITISV_012424 [Vitis vinifera] 68 1e-09
ref|XP_006290409.1| hypothetical protein CARUB_v10019081mg [Caps... 66 6e-09
gb|EOY26249.1| Pentatricopeptide repeat-containing protein, puta... 65 9e-09
gb|EMJ21852.1| hypothetical protein PRUPE_ppa003671mg [Prunus pe... 65 9e-09
ref|XP_002531020.1| pentatricopeptide repeat-containing protein,... 64 3e-08
ref|XP_006440940.1| hypothetical protein CICLE_v10019823mg [Citr... 63 4e-08
ref|XP_003553908.2| PREDICTED: pentatricopeptide repeat-containi... 63 5e-08
ref|XP_006485771.1| PREDICTED: pentatricopeptide repeat-containi... 62 6e-08
gb|ESW23095.1| hypothetical protein PHAVU_004G017900g [Phaseolus... 62 1e-07
ref|XP_004308198.1| PREDICTED: pentatricopeptide repeat-containi... 62 1e-07
ref|XP_002878376.1| pentatricopeptide repeat-containing protein ... 60 3e-07
ref|XP_006402489.1| hypothetical protein EUTSA_v10006474mg [Eutr... 60 4e-07
ref|XP_004143709.1| PREDICTED: pentatricopeptide repeat-containi... 58 1e-06
ref|NP_191695.1| pentatricopeptide repeat-containing protein [Ar... 57 3e-06
>ref|XP_006359825.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g61360-like isoform X1 [Solanum tuberosum]
gi|565388118|ref|XP_006359826.1| PREDICTED:
pentatricopeptide repeat-containing protein
At3g61360-like isoform X2 [Solanum tuberosum]
gi|565388120|ref|XP_006359827.1| PREDICTED:
pentatricopeptide repeat-containing protein
At3g61360-like isoform X3 [Solanum tuberosum]
gi|565388122|ref|XP_006359828.1| PREDICTED:
pentatricopeptide repeat-containing protein
At3g61360-like isoform X4 [Solanum tuberosum]
Length = 504
Score = 127 bits (319), Expect = 2e-27
Identities = 64/84 (76%), Positives = 72/84 (85%)
Frame = +1
Query: 268 MAVVISKRRDKFGQIRRVVGQLNDRFWLSSWLHSVSETKDEIETIARIINDHPFPVEPLQ 447
MAVVIS R DKFG++ RVVG RFW SS +HSVSETKDE+ETIARIINDHPFPV+PLQ
Sbjct: 1 MAVVISTRIDKFGRVLRVVGH---RFWSSSLVHSVSETKDEVETIARIINDHPFPVQPLQ 57
Query: 448 PTLQRHISPSILSTTFAENVLGRL 519
PTL+RH+S SILST F ENV+GRL
Sbjct: 58 PTLKRHVSSSILSTMFVENVIGRL 81
>ref|XP_004237781.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g61360-like [Solanum lycopersicum]
Length = 504
Score = 120 bits (301), Expect = 2e-25
Identities = 62/84 (73%), Positives = 70/84 (83%)
Frame = +1
Query: 268 MAVVISKRRDKFGQIRRVVGQLNDRFWLSSWLHSVSETKDEIETIARIINDHPFPVEPLQ 447
M VVIS R DKFG++ RVVGQ RF SS +HSVSETKDE+ETIARIINDHPFPV+PLQ
Sbjct: 1 MVVVISTRIDKFGRVLRVVGQ---RFLSSSLVHSVSETKDEVETIARIINDHPFPVQPLQ 57
Query: 448 PTLQRHISPSILSTTFAENVLGRL 519
P L+RH+S SILST F ENV+GRL
Sbjct: 58 PMLKRHVSSSILSTMFVENVIGRL 81
>gb|EXC35161.1| hypothetical protein L484_022712 [Morus notabilis]
Length = 548
Score = 74.3 bits (181), Expect = 2e-11
Identities = 36/49 (73%), Positives = 40/49 (81%)
Frame = +1
Query: 373 SETKDEIETIARIINDHPFPVEPLQPTLQRHISPSILSTTFAENVLGRL 519
SETK EIE I RIINDHPFP +PLQPTL +HI ++LS TF ENVLGRL
Sbjct: 38 SETKIEIERITRIINDHPFPDQPLQPTLLQHIPLAVLSNTFVENVLGRL 86
>ref|XP_006368282.1| pentatricopeptide repeat-containing family protein [Populus
trichocarpa] gi|550346186|gb|ERP64851.1|
pentatricopeptide repeat-containing family protein
[Populus trichocarpa]
Length = 512
Score = 70.5 bits (171), Expect = 2e-10
Identities = 34/64 (53%), Positives = 44/64 (68%)
Frame = +1
Query: 328 QLNDRFWLSSWLHSVSETKDEIETIARIINDHPFPVEPLQPTLQRHISPSILSTTFAENV 507
Q+ R +++ + S E+E IARIINDHPFP +PL PTL HI P++L+T F ENV
Sbjct: 19 QIPKRLFVALSPTATSTQSIEVERIARIINDHPFPNQPLHPTLTHHIPPTLLTTAFVENV 78
Query: 508 LGRL 519
LGRL
Sbjct: 79 LGRL 82
>ref|XP_002326772.1| predicted protein [Populus trichocarpa]
Length = 512
Score = 70.5 bits (171), Expect = 2e-10
Identities = 34/64 (53%), Positives = 44/64 (68%)
Frame = +1
Query: 328 QLNDRFWLSSWLHSVSETKDEIETIARIINDHPFPVEPLQPTLQRHISPSILSTTFAENV 507
Q+ R +++ + S E+E IARIINDHPFP +PL PTL HI P++L+T F ENV
Sbjct: 19 QIPKRLFVALSPTATSTQSIEVERIARIINDHPFPNQPLHPTLTHHIPPTLLTTAFVENV 78
Query: 508 LGRL 519
LGRL
Sbjct: 79 LGRL 82
>ref|XP_002272860.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61360
[Vitis vinifera] gi|296081020|emb|CBI18524.3| unnamed
protein product [Vitis vinifera]
Length = 513
Score = 67.8 bits (164), Expect = 1e-09
Identities = 39/85 (45%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Frame = +1
Query: 268 MAVVISKRRDKFGQI-RRVVGQLNDRFWLSSWLHSVSETKDEIETIARIINDHPFPVEPL 444
M ++ +KR ++ QI +++ LN F S H E K EI+ + RIINDHPFP PL
Sbjct: 1 MLLLRTKRSNQPYQIPQKLTLFLNIAFKSSGQSHPSLEIKSEIDRVTRIINDHPFPDHPL 60
Query: 445 QPTLQRHISPSILSTTFAENVLGRL 519
TL +H+ +LS TF ENVLGRL
Sbjct: 61 HSTLIQHVPKHLLSNTFVENVLGRL 85
>emb|CAN75780.1| hypothetical protein VITISV_012424 [Vitis vinifera]
Length = 515
Score = 67.8 bits (164), Expect = 1e-09
Identities = 39/85 (45%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Frame = +1
Query: 268 MAVVISKRRDKFGQI-RRVVGQLNDRFWLSSWLHSVSETKDEIETIARIINDHPFPVEPL 444
M ++ +KR ++ QI +++ LN F S H E K EI+ + RIINDHPFP PL
Sbjct: 1 MLLLRTKRSNQPYQIPQKLTLFLNIAFKSSGQSHPSLEIKSEIDRVTRIINDHPFPDHPL 60
Query: 445 QPTLQRHISPSILSTTFAENVLGRL 519
TL +H+ +LS TF ENVLGRL
Sbjct: 61 HSTLIQHVPKHLLSNTFVENVLGRL 85
>ref|XP_006290409.1| hypothetical protein CARUB_v10019081mg [Capsella rubella]
gi|482559116|gb|EOA23307.1| hypothetical protein
CARUB_v10019081mg [Capsella rubella]
Length = 495
Score = 65.9 bits (159), Expect = 6e-09
Identities = 34/57 (59%), Positives = 37/57 (64%)
Frame = +1
Query: 349 LSSWLHSVSETKDEIETIARIINDHPFPVEPLQPTLQRHISPSILSTTFAENVLGRL 519
+SS L S S K EIE I RIINDHPFP P+QP L +HI S LS F VLGRL
Sbjct: 17 ISSSLSSTSRNKTEIERITRIINDHPFPNHPIQPILAKHIPLSSLSPEFVSEVLGRL 73
>gb|EOY26249.1| Pentatricopeptide repeat-containing protein, putative [Theobroma
cacao]
Length = 512
Score = 65.1 bits (157), Expect = 9e-09
Identities = 33/49 (67%), Positives = 36/49 (73%)
Frame = +1
Query: 373 SETKDEIETIARIINDHPFPVEPLQPTLQRHISPSILSTTFAENVLGRL 519
SE K EIE I RIINDHPFP EPLQPTL + I LS +F E+VLGRL
Sbjct: 39 SEIKTEIERITRIINDHPFPDEPLQPTLLQQIPRIALSVSFVESVLGRL 87
>gb|EMJ21852.1| hypothetical protein PRUPE_ppa003671mg [Prunus persica]
Length = 557
Score = 65.1 bits (157), Expect = 9e-09
Identities = 32/57 (56%), Positives = 40/57 (70%)
Frame = +1
Query: 349 LSSWLHSVSETKDEIETIARIINDHPFPVEPLQPTLQRHISPSILSTTFAENVLGRL 519
+SS SET E++ I RIIN+HP+P +PL PTL +HI P LST+F ENVLG L
Sbjct: 27 ISSQFLPSSETNIEVDRITRIINNHPYPDQPLLPTLLQHIPPHALSTSFVENVLGYL 83
>ref|XP_002531020.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223529395|gb|EEF31358.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 530
Score = 63.5 bits (153), Expect = 3e-08
Identities = 32/57 (56%), Positives = 41/57 (71%)
Frame = +1
Query: 349 LSSWLHSVSETKDEIETIARIINDHPFPVEPLQPTLQRHISPSILSTTFAENVLGRL 519
LS + HS+SE +E I +IIND+ FP E L PTL +H++P+ LST F ENVLGRL
Sbjct: 50 LSGFTHSISE----VERITKIINDNSFPNESLYPTLLKHLNPAALSTDFVENVLGRL 102
>ref|XP_006440940.1| hypothetical protein CICLE_v10019823mg [Citrus clementina]
gi|557543202|gb|ESR54180.1| hypothetical protein
CICLE_v10019823mg [Citrus clementina]
Length = 500
Score = 63.2 bits (152), Expect = 4e-08
Identities = 40/79 (50%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Frame = +1
Query: 286 KRRDKFGQIRRVVGQLNDRFWLSSWLHSVSETKDEIETIARIINDHPFPVEPLQPTLQRH 465
KR DKF I +DR L L S + EIE I RIINDHPFP +PL PTL +H
Sbjct: 8 KRSDKFPGI-------SDRLAL---LFSTTTQSSEIERITRIINDHPFPDQPLHPTLLQH 57
Query: 466 ISPSI-LSTTFAENVLGRL 519
+ + LS+T ENVLGRL
Sbjct: 58 LPQTTPLSSTLVENVLGRL 76
>ref|XP_003553908.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g61360-like [Glycine max]
Length = 616
Score = 62.8 bits (151), Expect = 5e-08
Identities = 27/51 (52%), Positives = 37/51 (72%)
Frame = +1
Query: 367 SVSETKDEIETIARIINDHPFPVEPLQPTLQRHISPSILSTTFAENVLGRL 519
S S+ +++T+ R INDHPFP++PLQPTL + PS ST+ EN+LGRL
Sbjct: 109 SCSQATVDVDTLTRTINDHPFPLQPLQPTLLHLLPPSTFSTSLVENILGRL 159
>ref|XP_006485771.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g61360-like [Citrus sinensis]
Length = 499
Score = 62.4 bits (150), Expect = 6e-08
Identities = 40/79 (50%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Frame = +1
Query: 286 KRRDKFGQIRRVVGQLNDRFWLSSWLHSVSETKDEIETIARIINDHPFPVEPLQPTLQRH 465
KR DKF I +DR L L S + EIE I RIINDHPFP +PL PTL +H
Sbjct: 8 KRCDKFPGI-------SDRLAL---LFSTTTQSSEIERITRIINDHPFPDQPLHPTLLQH 57
Query: 466 ISPSI-LSTTFAENVLGRL 519
+ + LS+T ENVLGRL
Sbjct: 58 LPQTTPLSSTLVENVLGRL 76
>gb|ESW23095.1| hypothetical protein PHAVU_004G017900g [Phaseolus vulgaris]
Length = 605
Score = 61.6 bits (148), Expect = 1e-07
Identities = 28/51 (54%), Positives = 36/51 (70%)
Frame = +1
Query: 367 SVSETKDEIETIARIINDHPFPVEPLQPTLQRHISPSILSTTFAENVLGRL 519
S S+ +++T+ RIINDHPFP++PL TL + PS STT ENVLGRL
Sbjct: 125 SCSQVAVDVDTLTRIINDHPFPLQPLHATLLHLLPPSTFSTTLVENVLGRL 175
>ref|XP_004308198.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g61360-like [Fragaria vesca subsp. vesca]
Length = 499
Score = 61.6 bits (148), Expect = 1e-07
Identities = 30/57 (52%), Positives = 41/57 (71%)
Frame = +1
Query: 349 LSSWLHSVSETKDEIETIARIINDHPFPVEPLQPTLQRHISPSILSTTFAENVLGRL 519
LSS S E +I+ I +IIN+HP+P +PLQP L ++I P++LST+F ENVLG L
Sbjct: 28 LSSQCVSSVEADIDIDRITKIINNHPYPDQPLQPALLQNIPPTLLSTSFVENVLGHL 84
>ref|XP_002878376.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297324214|gb|EFH54635.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 498
Score = 60.1 bits (144), Expect = 3e-07
Identities = 31/56 (55%), Positives = 34/56 (60%)
Frame = +1
Query: 352 SSWLHSVSETKDEIETIARIINDHPFPVEPLQPTLQRHISPSILSTTFAENVLGRL 519
SS L S S + EIE I RIINDHPFP P+QP +HI S LS F VLG L
Sbjct: 21 SSSLSSTSRNRTEIELITRIINDHPFPNHPIQPIFTKHIPLSSLSPEFVSEVLGSL 76
>ref|XP_006402489.1| hypothetical protein EUTSA_v10006474mg [Eutrema salsugineum]
gi|557103588|gb|ESQ43942.1| hypothetical protein
EUTSA_v10006474mg [Eutrema salsugineum]
Length = 498
Score = 59.7 bits (143), Expect = 4e-07
Identities = 29/51 (56%), Positives = 33/51 (64%)
Frame = +1
Query: 367 SVSETKDEIETIARIINDHPFPVEPLQPTLQRHISPSILSTTFAENVLGRL 519
S S + EIE + RIINDHPFP P+QP L +HI S LS F VLGRL
Sbjct: 27 SSSRNRTEIERVTRIINDHPFPNHPIQPILAKHIPLSSLSPDFVSEVLGRL 77
>ref|XP_004143709.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g61360-like [Cucumis sativus]
gi|449520004|ref|XP_004167024.1| PREDICTED:
pentatricopeptide repeat-containing protein
At3g61360-like [Cucumis sativus]
Length = 504
Score = 58.2 bits (139), Expect = 1e-06
Identities = 29/53 (54%), Positives = 36/53 (67%)
Frame = +1
Query: 361 LHSVSETKDEIETIARIINDHPFPVEPLQPTLQRHISPSILSTTFAENVLGRL 519
LH S++ EIE IA+IINDHPFP +PL PTL I + S TF +VLG+L
Sbjct: 31 LHPSSKSTTEIERIAKIINDHPFPDQPLHPTLLHLIPSPLPSNTFLNDVLGQL 83
>ref|NP_191695.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75264589|sp|Q9M2C8.1|PP291_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At3g61360 gi|6850903|emb|CAB71066.1| putative protein
[Arabidopsis thaliana] gi|25054868|gb|AAN71923.1|
unknown protein [Arabidopsis thaliana]
gi|332646669|gb|AEE80190.1| pentatricopeptide
repeat-containing protein [Arabidopsis thaliana]
Length = 498
Score = 57.0 bits (136), Expect = 3e-06
Identities = 31/56 (55%), Positives = 34/56 (60%)
Frame = +1
Query: 352 SSWLHSVSETKDEIETIARIINDHPFPVEPLQPTLQRHISPSILSTTFAENVLGRL 519
SS L S S + EIE I IIN HPFP P+QP L +HI S LS F VLGRL
Sbjct: 21 SSSLSSTSINRTEIERITIIINGHPFPNHPIQPILAKHIPLSSLSPEFVSEVLGRL 76