BLASTX nr result
ID: Atropa21_contig00037679
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Atropa21_contig00037679 (570 letters) Database: nr 37,332,560 sequences; 13,225,080,153 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_006347073.1| PREDICTED: RNA polymerase-associated protein... 185 8e-45 ref|XP_004232840.1| PREDICTED: RNA polymerase-associated protein... 182 7e-44 ref|XP_003635274.1| PREDICTED: uncharacterized protein LOC100854... 110 2e-22 gb|ESW31293.1| hypothetical protein PHAVU_002G226300g [Phaseolus... 105 6e-21 ref|XP_003529309.1| PREDICTED: RNA polymerase-associated protein... 105 8e-21 ref|XP_003542767.1| PREDICTED: RNA polymerase-associated protein... 105 1e-20 ref|XP_004149150.1| PREDICTED: RNA polymerase-associated protein... 103 3e-20 gb|EOY28313.1| PAF1 complex component isoform 1 [Theobroma cacao... 100 3e-19 ref|XP_002519028.1| RNA polymerase-associated protein RTF1, puta... 97 3e-18 ref|XP_002316628.2| plus-3 domain-containing family protein [Pop... 96 5e-18 gb|EXB82802.1| RNA polymerase-associated protein RTF1-like prote... 95 1e-17 ref|XP_004505022.1| PREDICTED: RNA polymerase-associated protein... 94 2e-17 gb|EMJ18830.1| hypothetical protein PRUPE_ppa002666mg [Prunus pe... 92 7e-17 ref|XP_002888111.1| At1g61040/T7P1_17 [Arabidopsis lyrata subsp.... 92 7e-17 ref|NP_176299.1| Paf1C-like transcription factor [Arabidopsis th... 92 1e-16 ref|XP_002305685.1| plus-3 domain-containing family protein [Pop... 91 2e-16 ref|XP_004304724.1| PREDICTED: RNA polymerase-associated protein... 91 2e-16 gb|AAM10312.1| At1g61040/T7P1_17 [Arabidopsis thaliana] 89 6e-16 ref|XP_006392066.1| hypothetical protein EUTSA_v10023338mg [Eutr... 89 8e-16 ref|XP_004293522.1| PREDICTED: RNA polymerase-associated protein... 89 8e-16 >ref|XP_006347073.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Solanum tuberosum] Length = 652 Score = 185 bits (469), Expect = 8e-45 Identities = 109/189 (57%), Positives = 116/189 (61%) Frame = -3 Query: 568 TGGRNRPPQSSRRHHKXXXXXXXXXXXXXXXXXXXRYLGRKLSGSQVPLKKRLDPPERXX 389 TGGRNRPPQSSRRHHK Y GRKLSGSQVPLKKRLDP ER Sbjct: 18 TGGRNRPPQSSRRHHKSSYSDDGSDSRDDDSDDGRGYSGRKLSGSQVPLKKRLDPQER-- 75 Query: 388 XXXXXXXXXXXXXXXXXXXXXXXXXXXDLYKDDDDRQKLAEMTELQREMTLAERAAKKSD 209 DLYKDDDDRQKLA+MTEL+REM L +RAAKKSD Sbjct: 76 DDDHSSHGEGNDGDGYGNESDDDSIGSDLYKDDDDRQKLAQMTELEREMILTDRAAKKSD 135 Query: 208 RSLHDKMIKDRNPPRKQSSPPSHSRGXXXXXXXXXXXXXXXXALNEIRAKQAKRARQQDP 29 RSLHDKMIKDR PRKQSSPPSHSRG ALNEIRAK+A+ +QQDP Sbjct: 136 RSLHDKMIKDRAQPRKQSSPPSHSRGMRSSTRALDRAADRDDALNEIRAKRAR--QQQDP 193 Query: 28 EGQWKLRDA 2 EGQ+KLRDA Sbjct: 194 EGQFKLRDA 202 >ref|XP_004232840.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform 1 [Solanum lycopersicum] gi|460374083|ref|XP_004232841.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform 2 [Solanum lycopersicum] Length = 645 Score = 182 bits (461), Expect = 7e-44 Identities = 107/189 (56%), Positives = 115/189 (60%) Frame = -3 Query: 568 TGGRNRPPQSSRRHHKXXXXXXXXXXXXXXXXXXXRYLGRKLSGSQVPLKKRLDPPERXX 389 TGGRNRPP SS+RHHK Y GRKLSGSQVPLKKRLDP ER Sbjct: 18 TGGRNRPPHSSKRHHKSSYSDDGSDSRDDDSDDGRGYSGRKLSGSQVPLKKRLDPQER-- 75 Query: 388 XXXXXXXXXXXXXXXXXXXXXXXXXXXDLYKDDDDRQKLAEMTELQREMTLAERAAKKSD 209 DLYKDDDDRQKLA+MTEL+REM L +RAAKKSD Sbjct: 76 DDDHSSHGEGNDGDGYGNESDDDSIGSDLYKDDDDRQKLAQMTELEREMILTDRAAKKSD 135 Query: 208 RSLHDKMIKDRNPPRKQSSPPSHSRGXXXXXXXXXXXXXXXXALNEIRAKQAKRARQQDP 29 RSLHDKMIKDR PRKQSSPPSHSRG ALNEIRAK+A+ +QQDP Sbjct: 136 RSLHDKMIKDRAQPRKQSSPPSHSRGMRSSTRALDRAADRDDALNEIRAKRAR--QQQDP 193 Query: 28 EGQWKLRDA 2 EGQ+KLRDA Sbjct: 194 EGQFKLRDA 202 >ref|XP_003635274.1| PREDICTED: uncharacterized protein LOC100854406 [Vitis vinifera] Length = 493 Score = 110 bits (275), Expect = 2e-22 Identities = 78/196 (39%), Positives = 95/196 (48%), Gaps = 7/196 (3%) Frame = -3 Query: 568 TGGRNR---PPQSSRRHHKXXXXXXXXXXXXXXXXXXXRYLGRKLSGSQVPLKKRLDPPE 398 T GRNR PP SRR + Y RK SGSQVPLKKRLDP E Sbjct: 17 TAGRNRHSLPP--SRRRREGSYSDDGSDSKDDDSDEDRGYSSRKPSGSQVPLKKRLDPTE 74 Query: 397 RXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLYKDDDDRQKLAEMTELQREMTLAERAAK 218 R DLYK++DDRQ+LA++TEL+REM L +RA K Sbjct: 75 RDDDHGSPEEGDDDGSDHEGDSSDDSDVGSDLYKNEDDRQQLAQLTELEREMILTDRATK 134 Query: 217 KSDRSLHDKMI----KDRNPPRKQSSPPSHSRGXXXXXXXXXXXXXXXXALNEIRAKQAK 50 K+D+ LH+K+ K++ RK+S P SRG ALNE+R AK Sbjct: 135 KTDKKLHEKLRSKRGKEKTQSRKESPPLQLSRGVRSSARSADRAAAKDDALNELR---AK 191 Query: 49 RARQQDPEGQWKLRDA 2 R + QDPE KLRDA Sbjct: 192 RLKHQDPEAHRKLRDA 207 >gb|ESW31293.1| hypothetical protein PHAVU_002G226300g [Phaseolus vulgaris] Length = 654 Score = 105 bits (263), Expect = 6e-21 Identities = 82/199 (41%), Positives = 94/199 (47%), Gaps = 10/199 (5%) Frame = -3 Query: 568 TGGRNR---PPQSSRRHHKXXXXXXXXXXXXXXXXXXXRYLGRKLSGSQVPLKKRLDPPE 398 T GRNR PP SRR H Y RK SGSQVPLKKRLDP E Sbjct: 17 TSGRNRHSLPP--SRRRHDGAYSDGGSDSRDDDSDDELNYASRKPSGSQVPLKKRLDPSE 74 Query: 397 RXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD--LYKDDDDRQKLAEMTELQREMTLAERA 224 R LYKD+DDR+KL+EMTELQREM L++RA Sbjct: 75 RDDDLGSQEEADDDDGHSDHDGDSSDESNIGDDLYKDEDDRRKLSEMTELQREMILSDRA 134 Query: 223 AKKSDRSLHDKMIKDR-----NPPRKQSSPPSHSRGXXXXXXXXXXXXXXXXALNEIRAK 59 KK D++L K+ R + PRKQS P S SR ALNE+R Sbjct: 135 TKKDDKNLLGKIASKREKGKVSVPRKQSPPMSSSR--MRASARSADRSAKNDALNELR-- 190 Query: 58 QAKRARQQDPEGQWKLRDA 2 AKR +QQDPE KLR+A Sbjct: 191 -AKRLKQQDPEAHRKLREA 208 >ref|XP_003529309.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform X1 [Glycine max] gi|571466984|ref|XP_006583809.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform X2 [Glycine max] Length = 656 Score = 105 bits (262), Expect = 8e-21 Identities = 81/196 (41%), Positives = 93/196 (47%), Gaps = 7/196 (3%) Frame = -3 Query: 568 TGGRNRPP-QSSRRHHKXXXXXXXXXXXXXXXXXXXRYLGRKLSGSQVPLKKRLDPPER- 395 T GRNR SSRR H Y RK SGSQVPLKKRLDP ER Sbjct: 17 TAGRNRHSLPSSRRRHDGAYSDGGSDSRDEDSDDELNYASRKPSGSQVPLKKRLDPTERD 76 Query: 394 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLYKDDDDRQKLAEMTELQREMTLAERAAKK 215 DLYKD+DDR+KL+EMTELQREM L++RA KK Sbjct: 77 DDLGSQEEADDDGRSDCDGDSSDESNIGDDLYKDEDDRRKLSEMTELQREMILSDRATKK 136 Query: 214 SDRSLHDKMIKDRNP-----PRKQSSPPSHSRGXXXXXXXXXXXXXXXXALNEIRAKQAK 50 D++L K+ R PRKQS P S SR ALNE+R AK Sbjct: 137 DDKNLLGKIASKREKGKVAVPRKQSPPMSSSR--MRASARSADRSAKNDALNELR---AK 191 Query: 49 RARQQDPEGQWKLRDA 2 R +QQDPE +LR+A Sbjct: 192 RLKQQDPEAHRRLREA 207 >ref|XP_003542767.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Glycine max] Length = 656 Score = 105 bits (261), Expect = 1e-20 Identities = 82/198 (41%), Positives = 94/198 (47%), Gaps = 9/198 (4%) Frame = -3 Query: 568 TGGRNR---PPQSSRRHHKXXXXXXXXXXXXXXXXXXXRYLGRKLSGSQVPLKKRLDPPE 398 T GRNR PP SRR H Y RK SGSQVPLKKRLDP E Sbjct: 17 TAGRNRHSLPP--SRRRHDGAYSDGGSDSRDDDSDDELNYASRKPSGSQVPLKKRLDPTE 74 Query: 397 R-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLYKDDDDRQKLAEMTELQREMTLAERAA 221 R DLYKD+DDR+KL+EMTELQREM L++RA Sbjct: 75 RDDDLGSQEEADDDGRSDHDGDSSDESNIGDDLYKDEDDRRKLSEMTELQREMILSDRAT 134 Query: 220 KKSDRSLHDKMIKDRN-----PPRKQSSPPSHSRGXXXXXXXXXXXXXXXXALNEIRAKQ 56 KK D++L K+ R PRKQS P S SR ALNE+R Sbjct: 135 KKDDKNLLGKIASKREKGKAAAPRKQSPPMSSSR--MRASARSADRSAKNDALNELR--- 189 Query: 55 AKRARQQDPEGQWKLRDA 2 AKR +QQDPE +LR+A Sbjct: 190 AKRLKQQDPEAHRRLREA 207 >ref|XP_004149150.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Cucumis sativus] gi|449517636|ref|XP_004165851.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Cucumis sativus] Length = 660 Score = 103 bits (257), Expect = 3e-20 Identities = 77/196 (39%), Positives = 94/196 (47%), Gaps = 9/196 (4%) Frame = -3 Query: 562 GRNR---PPQSSRRHHKXXXXXXXXXXXXXXXXXXXRYLGRKLSGSQVPLKKRLDPPERX 392 GRNR PP SRR + Y RK SGSQVPLKKRLDP ER Sbjct: 19 GRNRHSHPP--SRRQREGSYSDAGSDSRDDDSDDDRGYASRKPSGSQVPLKKRLDPTERD 76 Query: 391 XXXXXXXXXXXXXXXXXXXXXXXXXXXXD--LYKDDDDRQKLAEMTELQREMTLAERAAK 218 LYKDDDDR+KLA M+ELQREM L++RA+K Sbjct: 77 DDGGSQEEGEDEDVGSEREGDSSDESDVGDDLYKDDDDRRKLAGMSELQREMILSDRASK 136 Query: 217 KSDRSLHD----KMIKDRNPPRKQSSPPSHSRGXXXXXXXXXXXXXXXXALNEIRAKQAK 50 K+D+ L++ KM K ++ P ++ +PP S ALNE+R AK Sbjct: 137 KNDKHLYESLRAKMDKGKSAPSRKETPPLPSSRIRSSARSADRAAAKDDALNELR---AK 193 Query: 49 RARQQDPEGQWKLRDA 2 R +QQDPE KLRDA Sbjct: 194 RLKQQDPEAHRKLRDA 209 >gb|EOY28313.1| PAF1 complex component isoform 1 [Theobroma cacao] gi|508781058|gb|EOY28314.1| PAF1 complex component isoform 1 [Theobroma cacao] Length = 660 Score = 100 bits (249), Expect = 3e-19 Identities = 76/199 (38%), Positives = 93/199 (46%), Gaps = 10/199 (5%) Frame = -3 Query: 568 TGGRNR---PPQSSRRHHKXXXXXXXXXXXXXXXXXXXRYLGRKLSGSQVPLKKRLDPPE 398 TGGRNR PP SRR + Y RK SGSQVPLKKRLDP E Sbjct: 17 TGGRNRHSLPP--SRRRREGSYSDGGSDSRDDDSDDDHGYASRKPSGSQVPLKKRLDPAE 74 Query: 397 RXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD--LYKDDDDRQKLAEMTELQREMTLAERA 224 R LYK++DDR+KLA+MTEL+RE+ L+ERA Sbjct: 75 RDDDQGSQEEGDYDDGVSVHEGDSSDESDVGDDLYKNEDDRRKLAQMTELERELILSERA 134 Query: 223 AKKSDRSLHDKMIKDR-----NPPRKQSSPPSHSRGXXXXXXXXXXXXXXXXALNEIRAK 59 K+ D+ +K+ R + RK++ P SRG ALNE+R Sbjct: 135 DKRGDKKFTEKIRSKRENDRPSRSRKETPPLPSSRGVRSSARSADRAAAKDDALNELR-- 192 Query: 58 QAKRARQQDPEGQWKLRDA 2 AKR +QQDPE KLRDA Sbjct: 193 -AKRLKQQDPEAHRKLRDA 210 >ref|XP_002519028.1| RNA polymerase-associated protein RTF1, putative [Ricinus communis] gi|223541691|gb|EEF43239.1| RNA polymerase-associated protein RTF1, putative [Ricinus communis] Length = 660 Score = 97.1 bits (240), Expect = 3e-18 Identities = 74/199 (37%), Positives = 93/199 (46%), Gaps = 10/199 (5%) Frame = -3 Query: 568 TGGRNR---PPQSSRRHHKXXXXXXXXXXXXXXXXXXXRYLGRKLSGSQVPLKKRLDPPE 398 T GRNR PP SRR + Y RK SGSQVPLKKRLDP E Sbjct: 17 TSGRNRNALPP--SRRRREGSYSDGGSDSRDDDSDDDRGYSSRKPSGSQVPLKKRLDPTE 74 Query: 397 RXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD--LYKDDDDRQKLAEMTELQREMTLAERA 224 R LYK++DDR+KLA+M+EL+REM L+ERA Sbjct: 75 RDDDQGSQDEGDYDDGNSDREGDSSDGSDVGEDLYKNEDDRRKLAQMSELEREMILSERA 134 Query: 223 AKKSDRSLHDKMIKDRNP-----PRKQSSPPSHSRGXXXXXXXXXXXXXXXXALNEIRAK 59 KK D++L +++ R RK++ P SRG ALNE++ Sbjct: 135 DKKGDKNLTERIRSKRESERTTRSRKETPPLPSSRGVRTSARSADRAAAKDDALNELK-- 192 Query: 58 QAKRARQQDPEGQWKLRDA 2 A+R +QQDPE KLRDA Sbjct: 193 -ARRLKQQDPEAHRKLRDA 210 >ref|XP_002316628.2| plus-3 domain-containing family protein [Populus trichocarpa] gi|550327599|gb|EEE97240.2| plus-3 domain-containing family protein [Populus trichocarpa] Length = 664 Score = 96.3 bits (238), Expect = 5e-18 Identities = 73/193 (37%), Positives = 89/193 (46%), Gaps = 7/193 (3%) Frame = -3 Query: 559 RNRPPQSSRRHHKXXXXXXXXXXXXXXXXXXXRYLGRKLSGSQVPLKKRLDPPERXXXXX 380 RN P S RR + Y RK SGSQVPLKKRL+ ER Sbjct: 22 RNSLPPSRRRKQEGSYSDGGSDSRDDGSDDDRGYASRKPSGSQVPLKKRLETNERDDEGG 81 Query: 379 XXXXXXXXXXXXXXXXXXXXXXXXD--LYKDDDDRQKLAEMTELQREMTLAERAAKKSDR 206 LYKD+DDRQKLA+M+EL RE+ LA+RA KK D+ Sbjct: 82 SQEEGDYDDGGSDREGESSDGSDIGDDLYKDEDDRQKLAQMSELDRELILADRADKKGDK 141 Query: 205 SLHDKM--IKDRNPP---RKQSSPPSHSRGXXXXXXXXXXXXXXXXALNEIRAKQAKRAR 41 L +K+ +D + P RK++ P SRG ALNE+R AKR + Sbjct: 142 HLTEKIRSKRDNDKPTRSRKETPPLPSSRGVRSSARSADRAAAKDDALNELR---AKRLK 198 Query: 40 QQDPEGQWKLRDA 2 QQDPE KLRDA Sbjct: 199 QQDPEAHRKLRDA 211 >gb|EXB82802.1| RNA polymerase-associated protein RTF1-like protein [Morus notabilis] Length = 658 Score = 95.1 bits (235), Expect = 1e-17 Identities = 76/197 (38%), Positives = 91/197 (46%), Gaps = 8/197 (4%) Frame = -3 Query: 568 TGGRNR---PPQSSRRHHKXXXXXXXXXXXXXXXXXXXRYLGRKLSGSQVPLKKRLDPPE 398 + GRNR PP SRR + Y RK SGSQVPLKKRLDP E Sbjct: 17 SAGRNRHSIPP--SRRRREGSYSDGGSDSRDDDSDDDRGYANRKPSGSQVPLKKRLDPTE 74 Query: 397 RXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLYKDDDDRQKLAEMTELQREMTLAERAAK 218 LYKDDDDR+KLAEMTELQREM L +RA+K Sbjct: 75 MDDDQGSEEEGDDDRGSDREGDSESDVGSD-LYKDDDDRRKLAEMTELQREMILLDRASK 133 Query: 217 KSDRSLHDKM-----IKDRNPPRKQSSPPSHSRGXXXXXXXXXXXXXXXXALNEIRAKQA 53 K D++L +K+ K + ++ +P SR ALNE+R A Sbjct: 134 KEDKNLKEKLRPKWDNKGKATQSRKETPLPSSR-VRSSARSADRAAAKDDALNELR---A 189 Query: 52 KRARQQDPEGQWKLRDA 2 KR +QQDPE KLRDA Sbjct: 190 KRLKQQDPEAHGKLRDA 206 >ref|XP_004505022.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform X1 [Cicer arietinum] gi|502142571|ref|XP_004505023.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform X2 [Cicer arietinum] Length = 658 Score = 94.4 bits (233), Expect = 2e-17 Identities = 77/197 (39%), Positives = 92/197 (46%), Gaps = 10/197 (5%) Frame = -3 Query: 562 GRNR---PPQSSRRHHKXXXXXXXXXXXXXXXXXXXRYLGRKLSGSQVPLKKRLDPPERX 392 GRNR PP SRR Y RK SGSQVPLKKRLDP ER Sbjct: 20 GRNRHSIPP--SRRRRDGSYSDGGSDSRDDDSDDELNYPSRKPSGSQVPLKKRLDPTERD 77 Query: 391 XXXXXXXXXXXXXXXXXXXXXXXXXXXXD--LYKDDDDRQKLAEMTELQREMTLAERAAK 218 LYKD+DDR+KL+EM+ELQREM L++RA+K Sbjct: 78 DDLGSQEEADDDDGRSDREGDSSDESNIGDDLYKDEDDRRKLSEMSELQREMILSDRASK 137 Query: 217 KSDRSLHDKMIKDRNPPR-----KQSSPPSHSRGXXXXXXXXXXXXXXXXALNEIRAKQA 53 K D+SL K+ R + KQS P S SR ALNE+R A Sbjct: 138 KDDKSLLGKIASKREKGKAIMTGKQSPPLSSSR--MRASARSADRSAKNVALNELR---A 192 Query: 52 KRARQQDPEGQWKLRDA 2 KR +QQDPE + +LR+A Sbjct: 193 KRLKQQDPEARRRLREA 209 >gb|EMJ18830.1| hypothetical protein PRUPE_ppa002666mg [Prunus persica] Length = 646 Score = 92.4 bits (228), Expect = 7e-17 Identities = 65/154 (42%), Positives = 80/154 (51%), Gaps = 1/154 (0%) Frame = -3 Query: 460 YLGRKLSGSQVPLKKRLDPPERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD-LYKDDDD 284 Y RK SG+QVPLKKRLDP E LYKD+DD Sbjct: 54 YASRKPSGTQVPLKKRLDPTEMDDEQGSQEEGDYNDSGSDRGGDSNESDVGSDLYKDEDD 113 Query: 283 RQKLAEMTELQREMTLAERAAKKSDRSLHDKMIKDRNPPRKQSSPPSHSRGXXXXXXXXX 104 R+KLAEM+ELQRE+ L++RA KK D+SL K++ P+K+ +PP S Sbjct: 114 RRKLAEMSELQRELILSDRAQKKDDKSL-----KEKFRPKKE-TPPLPSSRVRSSARSAD 167 Query: 103 XXXXXXXALNEIRAKQAKRARQQDPEGQWKLRDA 2 ALNE+R AKR +QQDPE KLRDA Sbjct: 168 RAAAKDDALNELR---AKRLKQQDPEAHRKLRDA 198 >ref|XP_002888111.1| At1g61040/T7P1_17 [Arabidopsis lyrata subsp. lyrata] gi|297333952|gb|EFH64370.1| At1g61040/T7P1_17 [Arabidopsis lyrata subsp. lyrata] Length = 643 Score = 92.4 bits (228), Expect = 7e-17 Identities = 71/194 (36%), Positives = 87/194 (44%), Gaps = 5/194 (2%) Frame = -3 Query: 568 TGGRNRPPQSSRRHHKXXXXXXXXXXXXXXXXXXXRYLGRKLSGSQVPLKKRLDPPERXX 389 + GR+R P SSRR + Y RK SGSQVPLKKRL+ Sbjct: 17 SAGRSRHPPSSRR--REGSYSDGSSDSRDDSDEDRGYASRKPSGSQVPLKKRLEAEREDR 74 Query: 388 XXXXXXXXXXXXXXXXXXXXXXXXXXXDLYKDDDDRQKLAEMTELQREMTLAERAAKKSD 209 DLYK+++DRQKLA MTE QREM LAERA KK D Sbjct: 75 AARVEGGYGDGPSDREGDSSEESDFGDDLYKNEEDRQKLAGMTEFQREMILAERADKKGD 134 Query: 208 RSLHDKMIKDRN-----PPRKQSSPPSHSRGXXXXXXXXXXXXXXXXALNEIRAKQAKRA 44 ++ +K+ R +K++ P SRG ALNE+R AKR Sbjct: 135 KNFTEKLRSKRENEKTPVSKKETQPLPASRGVRSSARSADRAAAKDDALNELR---AKRM 191 Query: 43 RQQDPEGQWKLRDA 2 +QQDP KLRDA Sbjct: 192 KQQDPAALRKLRDA 205 >ref|NP_176299.1| Paf1C-like transcription factor [Arabidopsis thaliana] gi|12323334|gb|AAG51642.1|AC018908_8 unknown protein; 78902-80833 [Arabidopsis thaliana] gi|332195649|gb|AEE33770.1| Paf1C-like transcription factor [Arabidopsis thaliana] Length = 643 Score = 91.7 bits (226), Expect = 1e-16 Identities = 70/194 (36%), Positives = 87/194 (44%), Gaps = 5/194 (2%) Frame = -3 Query: 568 TGGRNRPPQSSRRHHKXXXXXXXXXXXXXXXXXXXRYLGRKLSGSQVPLKKRLDPPERXX 389 + GR+R P SSRR + Y RK SGSQVPLKKRL+ Sbjct: 17 SAGRSRHPPSSRR--REGSYSDGSSDSRDDSDEDRGYASRKPSGSQVPLKKRLEAEREDR 74 Query: 388 XXXXXXXXXXXXXXXXXXXXXXXXXXXDLYKDDDDRQKLAEMTELQREMTLAERAAKKSD 209 DLYK+++DRQKLA MTE QREM L+ERA KK D Sbjct: 75 AARVEGGYGDGPSDREGDSSEESDFGDDLYKNEEDRQKLAGMTEFQREMILSERADKKGD 134 Query: 208 RSLHDKMIKDRNP-----PRKQSSPPSHSRGXXXXXXXXXXXXXXXXALNEIRAKQAKRA 44 ++ +K+ R +K++ P SRG ALNE+R AKR Sbjct: 135 KNFTEKLRSKRESEKTPVSKKETQPLPASRGVRSSARSADRAAAKDDALNELR---AKRM 191 Query: 43 RQQDPEGQWKLRDA 2 +QQDP KLRDA Sbjct: 192 KQQDPAALRKLRDA 205 >ref|XP_002305685.1| plus-3 domain-containing family protein [Populus trichocarpa] gi|222848649|gb|EEE86196.1| plus-3 domain-containing family protein [Populus trichocarpa] Length = 662 Score = 91.3 bits (225), Expect = 2e-16 Identities = 65/159 (40%), Positives = 81/159 (50%), Gaps = 7/159 (4%) Frame = -3 Query: 460 YLGRKLSGSQVPLKKRLDPPERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD--LYKDDD 287 Y RK SGSQVPLKKRL+ ER LYKD+D Sbjct: 55 YANRKPSGSQVPLKKRLETNERDGEEGSQDEGDYDGGGSDREGGSSDESDIGDDLYKDED 114 Query: 286 DRQKLAEMTELQREMTLAERAAKKSDRSLHDK--MIKDRNPP---RKQSSPPSHSRGXXX 122 DR+KLA+M+EL RE+ LA+RA KK D+ L +K + +D + P RK++ P SRG Sbjct: 115 DRKKLAQMSELDRELILADRADKKGDKHLTEKIRLKRDNDKPTRSRKETPPLPSSRGVRS 174 Query: 121 XXXXXXXXXXXXXALNEIRAKQAKRARQQDPEGQWKLRD 5 ALNE+R AKR +QQDPE KLRD Sbjct: 175 SARSADRAAAKDDALNELR---AKRLKQQDPEAHRKLRD 210 >ref|XP_004304724.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Fragaria vesca subsp. vesca] Length = 619 Score = 90.9 bits (224), Expect = 2e-16 Identities = 65/157 (41%), Positives = 79/157 (50%), Gaps = 5/157 (3%) Frame = -3 Query: 460 YLGRKLSGSQVPLKKRLDPPE-RXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLYKDDDD 284 Y RK SGSQVPLKKRLDP E DLYKD+DD Sbjct: 54 YASRKPSGSQVPLKKRLDPSEVDDERDSQDEGDYNDSGSDRGGESNESDVGSDLYKDEDD 113 Query: 283 RQKLAEMTELQREMTLAERAAKKSDRSLHDKM----IKDRNPPRKQSSPPSHSRGXXXXX 116 R+KLAEM+ELQRE+ L++RA KK D+SL +K K + ++ +PP S Sbjct: 114 RRKLAEMSELQRELILSDRAQKKDDKSLKEKFRPKWDKGKATQSRKVTPPLPSSRVRSSA 173 Query: 115 XXXXXXXXXXXALNEIRAKQAKRARQQDPEGQWKLRD 5 ALNE+R AKR +QQDPE KLRD Sbjct: 174 RSADRAAAKDDALNELR---AKRLKQQDPEAHRKLRD 207 >gb|AAM10312.1| At1g61040/T7P1_17 [Arabidopsis thaliana] Length = 643 Score = 89.4 bits (220), Expect = 6e-16 Identities = 69/194 (35%), Positives = 86/194 (44%), Gaps = 5/194 (2%) Frame = -3 Query: 568 TGGRNRPPQSSRRHHKXXXXXXXXXXXXXXXXXXXRYLGRKLSGSQVPLKKRLDPPERXX 389 + GR+ P SSRR + Y RK SGSQVPLKKRL+ Sbjct: 17 SAGRSSHPPSSRR--REGSYSDGSSDSRDDSDEDRGYASRKPSGSQVPLKKRLEAEREDR 74 Query: 388 XXXXXXXXXXXXXXXXXXXXXXXXXXXDLYKDDDDRQKLAEMTELQREMTLAERAAKKSD 209 DLYK+++DRQKLA MTE QREM L+ERA KK D Sbjct: 75 AARVEGGYGDGPSDREGDSSEESDFGDDLYKNEEDRQKLAGMTEFQREMILSERADKKGD 134 Query: 208 RSLHDKMIKDRNP-----PRKQSSPPSHSRGXXXXXXXXXXXXXXXXALNEIRAKQAKRA 44 ++ +K+ R +K++ P SRG ALNE+R AKR Sbjct: 135 KNFTEKLRSKRESEKTPVSKKETQPLPASRGVRSSARSADRAAAKDDALNELR---AKRM 191 Query: 43 RQQDPEGQWKLRDA 2 +QQDP KLRDA Sbjct: 192 KQQDPAALRKLRDA 205 >ref|XP_006392066.1| hypothetical protein EUTSA_v10023338mg [Eutrema salsugineum] gi|557088572|gb|ESQ29352.1| hypothetical protein EUTSA_v10023338mg [Eutrema salsugineum] Length = 644 Score = 89.0 bits (219), Expect = 8e-16 Identities = 64/158 (40%), Positives = 78/158 (49%), Gaps = 5/158 (3%) Frame = -3 Query: 460 YLGRKLSGSQVPLKKRLDPPERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLYKDDDDR 281 Y RK SGSQVPLKKRL+ DLYK+++DR Sbjct: 53 YASRKPSGSQVPLKKRLEAEREDRAARDEAGYGDGPSDREGDSSEESDFGDDLYKNEEDR 112 Query: 280 QKLAEMTELQREMTLAERAAKKSDRS----LHDKMIKDRNP-PRKQSSPPSHSRGXXXXX 116 QKLA MTE QREM LAERA KK D++ L K K++ P +K++ P SRG Sbjct: 113 QKLAGMTEFQREMILAERADKKGDKNFTEKLRSKREKEKTPVSKKETQPLPASRGVRSSA 172 Query: 115 XXXXXXXXXXXALNEIRAKQAKRARQQDPEGQWKLRDA 2 ALNE+R AKR +QQ+P KLRDA Sbjct: 173 RSADRAAAKDDALNELR---AKRMKQQEPASLRKLRDA 207 >ref|XP_004293522.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Fragaria vesca subsp. vesca] Length = 657 Score = 89.0 bits (219), Expect = 8e-16 Identities = 64/157 (40%), Positives = 79/157 (50%), Gaps = 5/157 (3%) Frame = -3 Query: 460 YLGRKLSGSQVPLKKRLDPPE-RXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLYKDDDD 284 Y RK SGSQVPLKKRLDP E DLYKD++D Sbjct: 54 YASRKPSGSQVPLKKRLDPSEVGDEHDSQDEGDYNDSGSDRGGESNESDVGSDLYKDEND 113 Query: 283 RQKLAEMTELQREMTLAERAAKKSDRSLHDKM----IKDRNPPRKQSSPPSHSRGXXXXX 116 R+KLAEM+ELQRE+ L++RA KK D+SL +K K + ++ +PP S Sbjct: 114 RRKLAEMSELQRELILSDRAQKKDDKSLKEKFRPKWDKGKATQSRKVTPPLPSSRVRSSA 173 Query: 115 XXXXXXXXXXXALNEIRAKQAKRARQQDPEGQWKLRD 5 ALNE+R AKR +QQDPE KLRD Sbjct: 174 RSADRAAAKDDALNELR---AKRLKQQDPEAHRKLRD 207