BLASTX nr result
ID: Atropa21_contig00037679
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Atropa21_contig00037679
(570 letters)
Database: nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006347073.1| PREDICTED: RNA polymerase-associated protein... 185 8e-45
ref|XP_004232840.1| PREDICTED: RNA polymerase-associated protein... 182 7e-44
ref|XP_003635274.1| PREDICTED: uncharacterized protein LOC100854... 110 2e-22
gb|ESW31293.1| hypothetical protein PHAVU_002G226300g [Phaseolus... 105 6e-21
ref|XP_003529309.1| PREDICTED: RNA polymerase-associated protein... 105 8e-21
ref|XP_003542767.1| PREDICTED: RNA polymerase-associated protein... 105 1e-20
ref|XP_004149150.1| PREDICTED: RNA polymerase-associated protein... 103 3e-20
gb|EOY28313.1| PAF1 complex component isoform 1 [Theobroma cacao... 100 3e-19
ref|XP_002519028.1| RNA polymerase-associated protein RTF1, puta... 97 3e-18
ref|XP_002316628.2| plus-3 domain-containing family protein [Pop... 96 5e-18
gb|EXB82802.1| RNA polymerase-associated protein RTF1-like prote... 95 1e-17
ref|XP_004505022.1| PREDICTED: RNA polymerase-associated protein... 94 2e-17
gb|EMJ18830.1| hypothetical protein PRUPE_ppa002666mg [Prunus pe... 92 7e-17
ref|XP_002888111.1| At1g61040/T7P1_17 [Arabidopsis lyrata subsp.... 92 7e-17
ref|NP_176299.1| Paf1C-like transcription factor [Arabidopsis th... 92 1e-16
ref|XP_002305685.1| plus-3 domain-containing family protein [Pop... 91 2e-16
ref|XP_004304724.1| PREDICTED: RNA polymerase-associated protein... 91 2e-16
gb|AAM10312.1| At1g61040/T7P1_17 [Arabidopsis thaliana] 89 6e-16
ref|XP_006392066.1| hypothetical protein EUTSA_v10023338mg [Eutr... 89 8e-16
ref|XP_004293522.1| PREDICTED: RNA polymerase-associated protein... 89 8e-16
>ref|XP_006347073.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Solanum
tuberosum]
Length = 652
Score = 185 bits (469), Expect = 8e-45
Identities = 109/189 (57%), Positives = 116/189 (61%)
Frame = -3
Query: 568 TGGRNRPPQSSRRHHKXXXXXXXXXXXXXXXXXXXRYLGRKLSGSQVPLKKRLDPPERXX 389
TGGRNRPPQSSRRHHK Y GRKLSGSQVPLKKRLDP ER
Sbjct: 18 TGGRNRPPQSSRRHHKSSYSDDGSDSRDDDSDDGRGYSGRKLSGSQVPLKKRLDPQER-- 75
Query: 388 XXXXXXXXXXXXXXXXXXXXXXXXXXXDLYKDDDDRQKLAEMTELQREMTLAERAAKKSD 209
DLYKDDDDRQKLA+MTEL+REM L +RAAKKSD
Sbjct: 76 DDDHSSHGEGNDGDGYGNESDDDSIGSDLYKDDDDRQKLAQMTELEREMILTDRAAKKSD 135
Query: 208 RSLHDKMIKDRNPPRKQSSPPSHSRGXXXXXXXXXXXXXXXXALNEIRAKQAKRARQQDP 29
RSLHDKMIKDR PRKQSSPPSHSRG ALNEIRAK+A+ +QQDP
Sbjct: 136 RSLHDKMIKDRAQPRKQSSPPSHSRGMRSSTRALDRAADRDDALNEIRAKRAR--QQQDP 193
Query: 28 EGQWKLRDA 2
EGQ+KLRDA
Sbjct: 194 EGQFKLRDA 202
>ref|XP_004232840.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform 1
[Solanum lycopersicum] gi|460374083|ref|XP_004232841.1|
PREDICTED: RNA polymerase-associated protein RTF1
homolog isoform 2 [Solanum lycopersicum]
Length = 645
Score = 182 bits (461), Expect = 7e-44
Identities = 107/189 (56%), Positives = 115/189 (60%)
Frame = -3
Query: 568 TGGRNRPPQSSRRHHKXXXXXXXXXXXXXXXXXXXRYLGRKLSGSQVPLKKRLDPPERXX 389
TGGRNRPP SS+RHHK Y GRKLSGSQVPLKKRLDP ER
Sbjct: 18 TGGRNRPPHSSKRHHKSSYSDDGSDSRDDDSDDGRGYSGRKLSGSQVPLKKRLDPQER-- 75
Query: 388 XXXXXXXXXXXXXXXXXXXXXXXXXXXDLYKDDDDRQKLAEMTELQREMTLAERAAKKSD 209
DLYKDDDDRQKLA+MTEL+REM L +RAAKKSD
Sbjct: 76 DDDHSSHGEGNDGDGYGNESDDDSIGSDLYKDDDDRQKLAQMTELEREMILTDRAAKKSD 135
Query: 208 RSLHDKMIKDRNPPRKQSSPPSHSRGXXXXXXXXXXXXXXXXALNEIRAKQAKRARQQDP 29
RSLHDKMIKDR PRKQSSPPSHSRG ALNEIRAK+A+ +QQDP
Sbjct: 136 RSLHDKMIKDRAQPRKQSSPPSHSRGMRSSTRALDRAADRDDALNEIRAKRAR--QQQDP 193
Query: 28 EGQWKLRDA 2
EGQ+KLRDA
Sbjct: 194 EGQFKLRDA 202
>ref|XP_003635274.1| PREDICTED: uncharacterized protein LOC100854406 [Vitis vinifera]
Length = 493
Score = 110 bits (275), Expect = 2e-22
Identities = 78/196 (39%), Positives = 95/196 (48%), Gaps = 7/196 (3%)
Frame = -3
Query: 568 TGGRNR---PPQSSRRHHKXXXXXXXXXXXXXXXXXXXRYLGRKLSGSQVPLKKRLDPPE 398
T GRNR PP SRR + Y RK SGSQVPLKKRLDP E
Sbjct: 17 TAGRNRHSLPP--SRRRREGSYSDDGSDSKDDDSDEDRGYSSRKPSGSQVPLKKRLDPTE 74
Query: 397 RXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLYKDDDDRQKLAEMTELQREMTLAERAAK 218
R DLYK++DDRQ+LA++TEL+REM L +RA K
Sbjct: 75 RDDDHGSPEEGDDDGSDHEGDSSDDSDVGSDLYKNEDDRQQLAQLTELEREMILTDRATK 134
Query: 217 KSDRSLHDKMI----KDRNPPRKQSSPPSHSRGXXXXXXXXXXXXXXXXALNEIRAKQAK 50
K+D+ LH+K+ K++ RK+S P SRG ALNE+R AK
Sbjct: 135 KTDKKLHEKLRSKRGKEKTQSRKESPPLQLSRGVRSSARSADRAAAKDDALNELR---AK 191
Query: 49 RARQQDPEGQWKLRDA 2
R + QDPE KLRDA
Sbjct: 192 RLKHQDPEAHRKLRDA 207
>gb|ESW31293.1| hypothetical protein PHAVU_002G226300g [Phaseolus vulgaris]
Length = 654
Score = 105 bits (263), Expect = 6e-21
Identities = 82/199 (41%), Positives = 94/199 (47%), Gaps = 10/199 (5%)
Frame = -3
Query: 568 TGGRNR---PPQSSRRHHKXXXXXXXXXXXXXXXXXXXRYLGRKLSGSQVPLKKRLDPPE 398
T GRNR PP SRR H Y RK SGSQVPLKKRLDP E
Sbjct: 17 TSGRNRHSLPP--SRRRHDGAYSDGGSDSRDDDSDDELNYASRKPSGSQVPLKKRLDPSE 74
Query: 397 RXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD--LYKDDDDRQKLAEMTELQREMTLAERA 224
R LYKD+DDR+KL+EMTELQREM L++RA
Sbjct: 75 RDDDLGSQEEADDDDGHSDHDGDSSDESNIGDDLYKDEDDRRKLSEMTELQREMILSDRA 134
Query: 223 AKKSDRSLHDKMIKDR-----NPPRKQSSPPSHSRGXXXXXXXXXXXXXXXXALNEIRAK 59
KK D++L K+ R + PRKQS P S SR ALNE+R
Sbjct: 135 TKKDDKNLLGKIASKREKGKVSVPRKQSPPMSSSR--MRASARSADRSAKNDALNELR-- 190
Query: 58 QAKRARQQDPEGQWKLRDA 2
AKR +QQDPE KLR+A
Sbjct: 191 -AKRLKQQDPEAHRKLREA 208
>ref|XP_003529309.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform
X1 [Glycine max] gi|571466984|ref|XP_006583809.1|
PREDICTED: RNA polymerase-associated protein RTF1
homolog isoform X2 [Glycine max]
Length = 656
Score = 105 bits (262), Expect = 8e-21
Identities = 81/196 (41%), Positives = 93/196 (47%), Gaps = 7/196 (3%)
Frame = -3
Query: 568 TGGRNRPP-QSSRRHHKXXXXXXXXXXXXXXXXXXXRYLGRKLSGSQVPLKKRLDPPER- 395
T GRNR SSRR H Y RK SGSQVPLKKRLDP ER
Sbjct: 17 TAGRNRHSLPSSRRRHDGAYSDGGSDSRDEDSDDELNYASRKPSGSQVPLKKRLDPTERD 76
Query: 394 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLYKDDDDRQKLAEMTELQREMTLAERAAKK 215
DLYKD+DDR+KL+EMTELQREM L++RA KK
Sbjct: 77 DDLGSQEEADDDGRSDCDGDSSDESNIGDDLYKDEDDRRKLSEMTELQREMILSDRATKK 136
Query: 214 SDRSLHDKMIKDRNP-----PRKQSSPPSHSRGXXXXXXXXXXXXXXXXALNEIRAKQAK 50
D++L K+ R PRKQS P S SR ALNE+R AK
Sbjct: 137 DDKNLLGKIASKREKGKVAVPRKQSPPMSSSR--MRASARSADRSAKNDALNELR---AK 191
Query: 49 RARQQDPEGQWKLRDA 2
R +QQDPE +LR+A
Sbjct: 192 RLKQQDPEAHRRLREA 207
>ref|XP_003542767.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Glycine
max]
Length = 656
Score = 105 bits (261), Expect = 1e-20
Identities = 82/198 (41%), Positives = 94/198 (47%), Gaps = 9/198 (4%)
Frame = -3
Query: 568 TGGRNR---PPQSSRRHHKXXXXXXXXXXXXXXXXXXXRYLGRKLSGSQVPLKKRLDPPE 398
T GRNR PP SRR H Y RK SGSQVPLKKRLDP E
Sbjct: 17 TAGRNRHSLPP--SRRRHDGAYSDGGSDSRDDDSDDELNYASRKPSGSQVPLKKRLDPTE 74
Query: 397 R-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLYKDDDDRQKLAEMTELQREMTLAERAA 221
R DLYKD+DDR+KL+EMTELQREM L++RA
Sbjct: 75 RDDDLGSQEEADDDGRSDHDGDSSDESNIGDDLYKDEDDRRKLSEMTELQREMILSDRAT 134
Query: 220 KKSDRSLHDKMIKDRN-----PPRKQSSPPSHSRGXXXXXXXXXXXXXXXXALNEIRAKQ 56
KK D++L K+ R PRKQS P S SR ALNE+R
Sbjct: 135 KKDDKNLLGKIASKREKGKAAAPRKQSPPMSSSR--MRASARSADRSAKNDALNELR--- 189
Query: 55 AKRARQQDPEGQWKLRDA 2
AKR +QQDPE +LR+A
Sbjct: 190 AKRLKQQDPEAHRRLREA 207
>ref|XP_004149150.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Cucumis
sativus] gi|449517636|ref|XP_004165851.1| PREDICTED: RNA
polymerase-associated protein RTF1 homolog [Cucumis
sativus]
Length = 660
Score = 103 bits (257), Expect = 3e-20
Identities = 77/196 (39%), Positives = 94/196 (47%), Gaps = 9/196 (4%)
Frame = -3
Query: 562 GRNR---PPQSSRRHHKXXXXXXXXXXXXXXXXXXXRYLGRKLSGSQVPLKKRLDPPERX 392
GRNR PP SRR + Y RK SGSQVPLKKRLDP ER
Sbjct: 19 GRNRHSHPP--SRRQREGSYSDAGSDSRDDDSDDDRGYASRKPSGSQVPLKKRLDPTERD 76
Query: 391 XXXXXXXXXXXXXXXXXXXXXXXXXXXXD--LYKDDDDRQKLAEMTELQREMTLAERAAK 218
LYKDDDDR+KLA M+ELQREM L++RA+K
Sbjct: 77 DDGGSQEEGEDEDVGSEREGDSSDESDVGDDLYKDDDDRRKLAGMSELQREMILSDRASK 136
Query: 217 KSDRSLHD----KMIKDRNPPRKQSSPPSHSRGXXXXXXXXXXXXXXXXALNEIRAKQAK 50
K+D+ L++ KM K ++ P ++ +PP S ALNE+R AK
Sbjct: 137 KNDKHLYESLRAKMDKGKSAPSRKETPPLPSSRIRSSARSADRAAAKDDALNELR---AK 193
Query: 49 RARQQDPEGQWKLRDA 2
R +QQDPE KLRDA
Sbjct: 194 RLKQQDPEAHRKLRDA 209
>gb|EOY28313.1| PAF1 complex component isoform 1 [Theobroma cacao]
gi|508781058|gb|EOY28314.1| PAF1 complex component
isoform 1 [Theobroma cacao]
Length = 660
Score = 100 bits (249), Expect = 3e-19
Identities = 76/199 (38%), Positives = 93/199 (46%), Gaps = 10/199 (5%)
Frame = -3
Query: 568 TGGRNR---PPQSSRRHHKXXXXXXXXXXXXXXXXXXXRYLGRKLSGSQVPLKKRLDPPE 398
TGGRNR PP SRR + Y RK SGSQVPLKKRLDP E
Sbjct: 17 TGGRNRHSLPP--SRRRREGSYSDGGSDSRDDDSDDDHGYASRKPSGSQVPLKKRLDPAE 74
Query: 397 RXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD--LYKDDDDRQKLAEMTELQREMTLAERA 224
R LYK++DDR+KLA+MTEL+RE+ L+ERA
Sbjct: 75 RDDDQGSQEEGDYDDGVSVHEGDSSDESDVGDDLYKNEDDRRKLAQMTELERELILSERA 134
Query: 223 AKKSDRSLHDKMIKDR-----NPPRKQSSPPSHSRGXXXXXXXXXXXXXXXXALNEIRAK 59
K+ D+ +K+ R + RK++ P SRG ALNE+R
Sbjct: 135 DKRGDKKFTEKIRSKRENDRPSRSRKETPPLPSSRGVRSSARSADRAAAKDDALNELR-- 192
Query: 58 QAKRARQQDPEGQWKLRDA 2
AKR +QQDPE KLRDA
Sbjct: 193 -AKRLKQQDPEAHRKLRDA 210
>ref|XP_002519028.1| RNA polymerase-associated protein RTF1, putative [Ricinus communis]
gi|223541691|gb|EEF43239.1| RNA polymerase-associated
protein RTF1, putative [Ricinus communis]
Length = 660
Score = 97.1 bits (240), Expect = 3e-18
Identities = 74/199 (37%), Positives = 93/199 (46%), Gaps = 10/199 (5%)
Frame = -3
Query: 568 TGGRNR---PPQSSRRHHKXXXXXXXXXXXXXXXXXXXRYLGRKLSGSQVPLKKRLDPPE 398
T GRNR PP SRR + Y RK SGSQVPLKKRLDP E
Sbjct: 17 TSGRNRNALPP--SRRRREGSYSDGGSDSRDDDSDDDRGYSSRKPSGSQVPLKKRLDPTE 74
Query: 397 RXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD--LYKDDDDRQKLAEMTELQREMTLAERA 224
R LYK++DDR+KLA+M+EL+REM L+ERA
Sbjct: 75 RDDDQGSQDEGDYDDGNSDREGDSSDGSDVGEDLYKNEDDRRKLAQMSELEREMILSERA 134
Query: 223 AKKSDRSLHDKMIKDRNP-----PRKQSSPPSHSRGXXXXXXXXXXXXXXXXALNEIRAK 59
KK D++L +++ R RK++ P SRG ALNE++
Sbjct: 135 DKKGDKNLTERIRSKRESERTTRSRKETPPLPSSRGVRTSARSADRAAAKDDALNELK-- 192
Query: 58 QAKRARQQDPEGQWKLRDA 2
A+R +QQDPE KLRDA
Sbjct: 193 -ARRLKQQDPEAHRKLRDA 210
>ref|XP_002316628.2| plus-3 domain-containing family protein [Populus trichocarpa]
gi|550327599|gb|EEE97240.2| plus-3 domain-containing
family protein [Populus trichocarpa]
Length = 664
Score = 96.3 bits (238), Expect = 5e-18
Identities = 73/193 (37%), Positives = 89/193 (46%), Gaps = 7/193 (3%)
Frame = -3
Query: 559 RNRPPQSSRRHHKXXXXXXXXXXXXXXXXXXXRYLGRKLSGSQVPLKKRLDPPERXXXXX 380
RN P S RR + Y RK SGSQVPLKKRL+ ER
Sbjct: 22 RNSLPPSRRRKQEGSYSDGGSDSRDDGSDDDRGYASRKPSGSQVPLKKRLETNERDDEGG 81
Query: 379 XXXXXXXXXXXXXXXXXXXXXXXXD--LYKDDDDRQKLAEMTELQREMTLAERAAKKSDR 206
LYKD+DDRQKLA+M+EL RE+ LA+RA KK D+
Sbjct: 82 SQEEGDYDDGGSDREGESSDGSDIGDDLYKDEDDRQKLAQMSELDRELILADRADKKGDK 141
Query: 205 SLHDKM--IKDRNPP---RKQSSPPSHSRGXXXXXXXXXXXXXXXXALNEIRAKQAKRAR 41
L +K+ +D + P RK++ P SRG ALNE+R AKR +
Sbjct: 142 HLTEKIRSKRDNDKPTRSRKETPPLPSSRGVRSSARSADRAAAKDDALNELR---AKRLK 198
Query: 40 QQDPEGQWKLRDA 2
QQDPE KLRDA
Sbjct: 199 QQDPEAHRKLRDA 211
>gb|EXB82802.1| RNA polymerase-associated protein RTF1-like protein [Morus
notabilis]
Length = 658
Score = 95.1 bits (235), Expect = 1e-17
Identities = 76/197 (38%), Positives = 91/197 (46%), Gaps = 8/197 (4%)
Frame = -3
Query: 568 TGGRNR---PPQSSRRHHKXXXXXXXXXXXXXXXXXXXRYLGRKLSGSQVPLKKRLDPPE 398
+ GRNR PP SRR + Y RK SGSQVPLKKRLDP E
Sbjct: 17 SAGRNRHSIPP--SRRRREGSYSDGGSDSRDDDSDDDRGYANRKPSGSQVPLKKRLDPTE 74
Query: 397 RXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLYKDDDDRQKLAEMTELQREMTLAERAAK 218
LYKDDDDR+KLAEMTELQREM L +RA+K
Sbjct: 75 MDDDQGSEEEGDDDRGSDREGDSESDVGSD-LYKDDDDRRKLAEMTELQREMILLDRASK 133
Query: 217 KSDRSLHDKM-----IKDRNPPRKQSSPPSHSRGXXXXXXXXXXXXXXXXALNEIRAKQA 53
K D++L +K+ K + ++ +P SR ALNE+R A
Sbjct: 134 KEDKNLKEKLRPKWDNKGKATQSRKETPLPSSR-VRSSARSADRAAAKDDALNELR---A 189
Query: 52 KRARQQDPEGQWKLRDA 2
KR +QQDPE KLRDA
Sbjct: 190 KRLKQQDPEAHGKLRDA 206
>ref|XP_004505022.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform
X1 [Cicer arietinum] gi|502142571|ref|XP_004505023.1|
PREDICTED: RNA polymerase-associated protein RTF1
homolog isoform X2 [Cicer arietinum]
Length = 658
Score = 94.4 bits (233), Expect = 2e-17
Identities = 77/197 (39%), Positives = 92/197 (46%), Gaps = 10/197 (5%)
Frame = -3
Query: 562 GRNR---PPQSSRRHHKXXXXXXXXXXXXXXXXXXXRYLGRKLSGSQVPLKKRLDPPERX 392
GRNR PP SRR Y RK SGSQVPLKKRLDP ER
Sbjct: 20 GRNRHSIPP--SRRRRDGSYSDGGSDSRDDDSDDELNYPSRKPSGSQVPLKKRLDPTERD 77
Query: 391 XXXXXXXXXXXXXXXXXXXXXXXXXXXXD--LYKDDDDRQKLAEMTELQREMTLAERAAK 218
LYKD+DDR+KL+EM+ELQREM L++RA+K
Sbjct: 78 DDLGSQEEADDDDGRSDREGDSSDESNIGDDLYKDEDDRRKLSEMSELQREMILSDRASK 137
Query: 217 KSDRSLHDKMIKDRNPPR-----KQSSPPSHSRGXXXXXXXXXXXXXXXXALNEIRAKQA 53
K D+SL K+ R + KQS P S SR ALNE+R A
Sbjct: 138 KDDKSLLGKIASKREKGKAIMTGKQSPPLSSSR--MRASARSADRSAKNVALNELR---A 192
Query: 52 KRARQQDPEGQWKLRDA 2
KR +QQDPE + +LR+A
Sbjct: 193 KRLKQQDPEARRRLREA 209
>gb|EMJ18830.1| hypothetical protein PRUPE_ppa002666mg [Prunus persica]
Length = 646
Score = 92.4 bits (228), Expect = 7e-17
Identities = 65/154 (42%), Positives = 80/154 (51%), Gaps = 1/154 (0%)
Frame = -3
Query: 460 YLGRKLSGSQVPLKKRLDPPERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD-LYKDDDD 284
Y RK SG+QVPLKKRLDP E LYKD+DD
Sbjct: 54 YASRKPSGTQVPLKKRLDPTEMDDEQGSQEEGDYNDSGSDRGGDSNESDVGSDLYKDEDD 113
Query: 283 RQKLAEMTELQREMTLAERAAKKSDRSLHDKMIKDRNPPRKQSSPPSHSRGXXXXXXXXX 104
R+KLAEM+ELQRE+ L++RA KK D+SL K++ P+K+ +PP S
Sbjct: 114 RRKLAEMSELQRELILSDRAQKKDDKSL-----KEKFRPKKE-TPPLPSSRVRSSARSAD 167
Query: 103 XXXXXXXALNEIRAKQAKRARQQDPEGQWKLRDA 2
ALNE+R AKR +QQDPE KLRDA
Sbjct: 168 RAAAKDDALNELR---AKRLKQQDPEAHRKLRDA 198
>ref|XP_002888111.1| At1g61040/T7P1_17 [Arabidopsis lyrata subsp. lyrata]
gi|297333952|gb|EFH64370.1| At1g61040/T7P1_17
[Arabidopsis lyrata subsp. lyrata]
Length = 643
Score = 92.4 bits (228), Expect = 7e-17
Identities = 71/194 (36%), Positives = 87/194 (44%), Gaps = 5/194 (2%)
Frame = -3
Query: 568 TGGRNRPPQSSRRHHKXXXXXXXXXXXXXXXXXXXRYLGRKLSGSQVPLKKRLDPPERXX 389
+ GR+R P SSRR + Y RK SGSQVPLKKRL+
Sbjct: 17 SAGRSRHPPSSRR--REGSYSDGSSDSRDDSDEDRGYASRKPSGSQVPLKKRLEAEREDR 74
Query: 388 XXXXXXXXXXXXXXXXXXXXXXXXXXXDLYKDDDDRQKLAEMTELQREMTLAERAAKKSD 209
DLYK+++DRQKLA MTE QREM LAERA KK D
Sbjct: 75 AARVEGGYGDGPSDREGDSSEESDFGDDLYKNEEDRQKLAGMTEFQREMILAERADKKGD 134
Query: 208 RSLHDKMIKDRN-----PPRKQSSPPSHSRGXXXXXXXXXXXXXXXXALNEIRAKQAKRA 44
++ +K+ R +K++ P SRG ALNE+R AKR
Sbjct: 135 KNFTEKLRSKRENEKTPVSKKETQPLPASRGVRSSARSADRAAAKDDALNELR---AKRM 191
Query: 43 RQQDPEGQWKLRDA 2
+QQDP KLRDA
Sbjct: 192 KQQDPAALRKLRDA 205
>ref|NP_176299.1| Paf1C-like transcription factor [Arabidopsis thaliana]
gi|12323334|gb|AAG51642.1|AC018908_8 unknown protein;
78902-80833 [Arabidopsis thaliana]
gi|332195649|gb|AEE33770.1| Paf1C-like transcription
factor [Arabidopsis thaliana]
Length = 643
Score = 91.7 bits (226), Expect = 1e-16
Identities = 70/194 (36%), Positives = 87/194 (44%), Gaps = 5/194 (2%)
Frame = -3
Query: 568 TGGRNRPPQSSRRHHKXXXXXXXXXXXXXXXXXXXRYLGRKLSGSQVPLKKRLDPPERXX 389
+ GR+R P SSRR + Y RK SGSQVPLKKRL+
Sbjct: 17 SAGRSRHPPSSRR--REGSYSDGSSDSRDDSDEDRGYASRKPSGSQVPLKKRLEAEREDR 74
Query: 388 XXXXXXXXXXXXXXXXXXXXXXXXXXXDLYKDDDDRQKLAEMTELQREMTLAERAAKKSD 209
DLYK+++DRQKLA MTE QREM L+ERA KK D
Sbjct: 75 AARVEGGYGDGPSDREGDSSEESDFGDDLYKNEEDRQKLAGMTEFQREMILSERADKKGD 134
Query: 208 RSLHDKMIKDRNP-----PRKQSSPPSHSRGXXXXXXXXXXXXXXXXALNEIRAKQAKRA 44
++ +K+ R +K++ P SRG ALNE+R AKR
Sbjct: 135 KNFTEKLRSKRESEKTPVSKKETQPLPASRGVRSSARSADRAAAKDDALNELR---AKRM 191
Query: 43 RQQDPEGQWKLRDA 2
+QQDP KLRDA
Sbjct: 192 KQQDPAALRKLRDA 205
>ref|XP_002305685.1| plus-3 domain-containing family protein [Populus trichocarpa]
gi|222848649|gb|EEE86196.1| plus-3 domain-containing
family protein [Populus trichocarpa]
Length = 662
Score = 91.3 bits (225), Expect = 2e-16
Identities = 65/159 (40%), Positives = 81/159 (50%), Gaps = 7/159 (4%)
Frame = -3
Query: 460 YLGRKLSGSQVPLKKRLDPPERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD--LYKDDD 287
Y RK SGSQVPLKKRL+ ER LYKD+D
Sbjct: 55 YANRKPSGSQVPLKKRLETNERDGEEGSQDEGDYDGGGSDREGGSSDESDIGDDLYKDED 114
Query: 286 DRQKLAEMTELQREMTLAERAAKKSDRSLHDK--MIKDRNPP---RKQSSPPSHSRGXXX 122
DR+KLA+M+EL RE+ LA+RA KK D+ L +K + +D + P RK++ P SRG
Sbjct: 115 DRKKLAQMSELDRELILADRADKKGDKHLTEKIRLKRDNDKPTRSRKETPPLPSSRGVRS 174
Query: 121 XXXXXXXXXXXXXALNEIRAKQAKRARQQDPEGQWKLRD 5
ALNE+R AKR +QQDPE KLRD
Sbjct: 175 SARSADRAAAKDDALNELR---AKRLKQQDPEAHRKLRD 210
>ref|XP_004304724.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Fragaria
vesca subsp. vesca]
Length = 619
Score = 90.9 bits (224), Expect = 2e-16
Identities = 65/157 (41%), Positives = 79/157 (50%), Gaps = 5/157 (3%)
Frame = -3
Query: 460 YLGRKLSGSQVPLKKRLDPPE-RXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLYKDDDD 284
Y RK SGSQVPLKKRLDP E DLYKD+DD
Sbjct: 54 YASRKPSGSQVPLKKRLDPSEVDDERDSQDEGDYNDSGSDRGGESNESDVGSDLYKDEDD 113
Query: 283 RQKLAEMTELQREMTLAERAAKKSDRSLHDKM----IKDRNPPRKQSSPPSHSRGXXXXX 116
R+KLAEM+ELQRE+ L++RA KK D+SL +K K + ++ +PP S
Sbjct: 114 RRKLAEMSELQRELILSDRAQKKDDKSLKEKFRPKWDKGKATQSRKVTPPLPSSRVRSSA 173
Query: 115 XXXXXXXXXXXALNEIRAKQAKRARQQDPEGQWKLRD 5
ALNE+R AKR +QQDPE KLRD
Sbjct: 174 RSADRAAAKDDALNELR---AKRLKQQDPEAHRKLRD 207
>gb|AAM10312.1| At1g61040/T7P1_17 [Arabidopsis thaliana]
Length = 643
Score = 89.4 bits (220), Expect = 6e-16
Identities = 69/194 (35%), Positives = 86/194 (44%), Gaps = 5/194 (2%)
Frame = -3
Query: 568 TGGRNRPPQSSRRHHKXXXXXXXXXXXXXXXXXXXRYLGRKLSGSQVPLKKRLDPPERXX 389
+ GR+ P SSRR + Y RK SGSQVPLKKRL+
Sbjct: 17 SAGRSSHPPSSRR--REGSYSDGSSDSRDDSDEDRGYASRKPSGSQVPLKKRLEAEREDR 74
Query: 388 XXXXXXXXXXXXXXXXXXXXXXXXXXXDLYKDDDDRQKLAEMTELQREMTLAERAAKKSD 209
DLYK+++DRQKLA MTE QREM L+ERA KK D
Sbjct: 75 AARVEGGYGDGPSDREGDSSEESDFGDDLYKNEEDRQKLAGMTEFQREMILSERADKKGD 134
Query: 208 RSLHDKMIKDRNP-----PRKQSSPPSHSRGXXXXXXXXXXXXXXXXALNEIRAKQAKRA 44
++ +K+ R +K++ P SRG ALNE+R AKR
Sbjct: 135 KNFTEKLRSKRESEKTPVSKKETQPLPASRGVRSSARSADRAAAKDDALNELR---AKRM 191
Query: 43 RQQDPEGQWKLRDA 2
+QQDP KLRDA
Sbjct: 192 KQQDPAALRKLRDA 205
>ref|XP_006392066.1| hypothetical protein EUTSA_v10023338mg [Eutrema salsugineum]
gi|557088572|gb|ESQ29352.1| hypothetical protein
EUTSA_v10023338mg [Eutrema salsugineum]
Length = 644
Score = 89.0 bits (219), Expect = 8e-16
Identities = 64/158 (40%), Positives = 78/158 (49%), Gaps = 5/158 (3%)
Frame = -3
Query: 460 YLGRKLSGSQVPLKKRLDPPERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLYKDDDDR 281
Y RK SGSQVPLKKRL+ DLYK+++DR
Sbjct: 53 YASRKPSGSQVPLKKRLEAEREDRAARDEAGYGDGPSDREGDSSEESDFGDDLYKNEEDR 112
Query: 280 QKLAEMTELQREMTLAERAAKKSDRS----LHDKMIKDRNP-PRKQSSPPSHSRGXXXXX 116
QKLA MTE QREM LAERA KK D++ L K K++ P +K++ P SRG
Sbjct: 113 QKLAGMTEFQREMILAERADKKGDKNFTEKLRSKREKEKTPVSKKETQPLPASRGVRSSA 172
Query: 115 XXXXXXXXXXXALNEIRAKQAKRARQQDPEGQWKLRDA 2
ALNE+R AKR +QQ+P KLRDA
Sbjct: 173 RSADRAAAKDDALNELR---AKRMKQQEPASLRKLRDA 207
>ref|XP_004293522.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Fragaria
vesca subsp. vesca]
Length = 657
Score = 89.0 bits (219), Expect = 8e-16
Identities = 64/157 (40%), Positives = 79/157 (50%), Gaps = 5/157 (3%)
Frame = -3
Query: 460 YLGRKLSGSQVPLKKRLDPPE-RXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLYKDDDD 284
Y RK SGSQVPLKKRLDP E DLYKD++D
Sbjct: 54 YASRKPSGSQVPLKKRLDPSEVGDEHDSQDEGDYNDSGSDRGGESNESDVGSDLYKDEND 113
Query: 283 RQKLAEMTELQREMTLAERAAKKSDRSLHDKM----IKDRNPPRKQSSPPSHSRGXXXXX 116
R+KLAEM+ELQRE+ L++RA KK D+SL +K K + ++ +PP S
Sbjct: 114 RRKLAEMSELQRELILSDRAQKKDDKSLKEKFRPKWDKGKATQSRKVTPPLPSSRVRSSA 173
Query: 115 XXXXXXXXXXXALNEIRAKQAKRARQQDPEGQWKLRD 5
ALNE+R AKR +QQDPE KLRD
Sbjct: 174 RSADRAAAKDDALNELR---AKRLKQQDPEAHRKLRD 207