BLASTX nr result

ID: Atropa21_contig00037679 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atropa21_contig00037679
         (570 letters)

Database: nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006347073.1| PREDICTED: RNA polymerase-associated protein...   185   8e-45
ref|XP_004232840.1| PREDICTED: RNA polymerase-associated protein...   182   7e-44
ref|XP_003635274.1| PREDICTED: uncharacterized protein LOC100854...   110   2e-22
gb|ESW31293.1| hypothetical protein PHAVU_002G226300g [Phaseolus...   105   6e-21
ref|XP_003529309.1| PREDICTED: RNA polymerase-associated protein...   105   8e-21
ref|XP_003542767.1| PREDICTED: RNA polymerase-associated protein...   105   1e-20
ref|XP_004149150.1| PREDICTED: RNA polymerase-associated protein...   103   3e-20
gb|EOY28313.1| PAF1 complex component isoform 1 [Theobroma cacao...   100   3e-19
ref|XP_002519028.1| RNA polymerase-associated protein RTF1, puta...    97   3e-18
ref|XP_002316628.2| plus-3 domain-containing family protein [Pop...    96   5e-18
gb|EXB82802.1| RNA polymerase-associated protein RTF1-like prote...    95   1e-17
ref|XP_004505022.1| PREDICTED: RNA polymerase-associated protein...    94   2e-17
gb|EMJ18830.1| hypothetical protein PRUPE_ppa002666mg [Prunus pe...    92   7e-17
ref|XP_002888111.1| At1g61040/T7P1_17 [Arabidopsis lyrata subsp....    92   7e-17
ref|NP_176299.1| Paf1C-like transcription factor [Arabidopsis th...    92   1e-16
ref|XP_002305685.1| plus-3 domain-containing family protein [Pop...    91   2e-16
ref|XP_004304724.1| PREDICTED: RNA polymerase-associated protein...    91   2e-16
gb|AAM10312.1| At1g61040/T7P1_17 [Arabidopsis thaliana]                89   6e-16
ref|XP_006392066.1| hypothetical protein EUTSA_v10023338mg [Eutr...    89   8e-16
ref|XP_004293522.1| PREDICTED: RNA polymerase-associated protein...    89   8e-16

>ref|XP_006347073.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Solanum
           tuberosum]
          Length = 652

 Score =  185 bits (469), Expect = 8e-45
 Identities = 109/189 (57%), Positives = 116/189 (61%)
 Frame = -3

Query: 568 TGGRNRPPQSSRRHHKXXXXXXXXXXXXXXXXXXXRYLGRKLSGSQVPLKKRLDPPERXX 389
           TGGRNRPPQSSRRHHK                    Y GRKLSGSQVPLKKRLDP ER  
Sbjct: 18  TGGRNRPPQSSRRHHKSSYSDDGSDSRDDDSDDGRGYSGRKLSGSQVPLKKRLDPQER-- 75

Query: 388 XXXXXXXXXXXXXXXXXXXXXXXXXXXDLYKDDDDRQKLAEMTELQREMTLAERAAKKSD 209
                                      DLYKDDDDRQKLA+MTEL+REM L +RAAKKSD
Sbjct: 76  DDDHSSHGEGNDGDGYGNESDDDSIGSDLYKDDDDRQKLAQMTELEREMILTDRAAKKSD 135

Query: 208 RSLHDKMIKDRNPPRKQSSPPSHSRGXXXXXXXXXXXXXXXXALNEIRAKQAKRARQQDP 29
           RSLHDKMIKDR  PRKQSSPPSHSRG                ALNEIRAK+A+  +QQDP
Sbjct: 136 RSLHDKMIKDRAQPRKQSSPPSHSRGMRSSTRALDRAADRDDALNEIRAKRAR--QQQDP 193

Query: 28  EGQWKLRDA 2
           EGQ+KLRDA
Sbjct: 194 EGQFKLRDA 202


>ref|XP_004232840.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform 1
           [Solanum lycopersicum] gi|460374083|ref|XP_004232841.1|
           PREDICTED: RNA polymerase-associated protein RTF1
           homolog isoform 2 [Solanum lycopersicum]
          Length = 645

 Score =  182 bits (461), Expect = 7e-44
 Identities = 107/189 (56%), Positives = 115/189 (60%)
 Frame = -3

Query: 568 TGGRNRPPQSSRRHHKXXXXXXXXXXXXXXXXXXXRYLGRKLSGSQVPLKKRLDPPERXX 389
           TGGRNRPP SS+RHHK                    Y GRKLSGSQVPLKKRLDP ER  
Sbjct: 18  TGGRNRPPHSSKRHHKSSYSDDGSDSRDDDSDDGRGYSGRKLSGSQVPLKKRLDPQER-- 75

Query: 388 XXXXXXXXXXXXXXXXXXXXXXXXXXXDLYKDDDDRQKLAEMTELQREMTLAERAAKKSD 209
                                      DLYKDDDDRQKLA+MTEL+REM L +RAAKKSD
Sbjct: 76  DDDHSSHGEGNDGDGYGNESDDDSIGSDLYKDDDDRQKLAQMTELEREMILTDRAAKKSD 135

Query: 208 RSLHDKMIKDRNPPRKQSSPPSHSRGXXXXXXXXXXXXXXXXALNEIRAKQAKRARQQDP 29
           RSLHDKMIKDR  PRKQSSPPSHSRG                ALNEIRAK+A+  +QQDP
Sbjct: 136 RSLHDKMIKDRAQPRKQSSPPSHSRGMRSSTRALDRAADRDDALNEIRAKRAR--QQQDP 193

Query: 28  EGQWKLRDA 2
           EGQ+KLRDA
Sbjct: 194 EGQFKLRDA 202


>ref|XP_003635274.1| PREDICTED: uncharacterized protein LOC100854406 [Vitis vinifera]
          Length = 493

 Score =  110 bits (275), Expect = 2e-22
 Identities = 78/196 (39%), Positives = 95/196 (48%), Gaps = 7/196 (3%)
 Frame = -3

Query: 568 TGGRNR---PPQSSRRHHKXXXXXXXXXXXXXXXXXXXRYLGRKLSGSQVPLKKRLDPPE 398
           T GRNR   PP  SRR  +                    Y  RK SGSQVPLKKRLDP E
Sbjct: 17  TAGRNRHSLPP--SRRRREGSYSDDGSDSKDDDSDEDRGYSSRKPSGSQVPLKKRLDPTE 74

Query: 397 RXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLYKDDDDRQKLAEMTELQREMTLAERAAK 218
           R                             DLYK++DDRQ+LA++TEL+REM L +RA K
Sbjct: 75  RDDDHGSPEEGDDDGSDHEGDSSDDSDVGSDLYKNEDDRQQLAQLTELEREMILTDRATK 134

Query: 217 KSDRSLHDKMI----KDRNPPRKQSSPPSHSRGXXXXXXXXXXXXXXXXALNEIRAKQAK 50
           K+D+ LH+K+     K++   RK+S P   SRG                ALNE+R   AK
Sbjct: 135 KTDKKLHEKLRSKRGKEKTQSRKESPPLQLSRGVRSSARSADRAAAKDDALNELR---AK 191

Query: 49  RARQQDPEGQWKLRDA 2
           R + QDPE   KLRDA
Sbjct: 192 RLKHQDPEAHRKLRDA 207


>gb|ESW31293.1| hypothetical protein PHAVU_002G226300g [Phaseolus vulgaris]
          Length = 654

 Score =  105 bits (263), Expect = 6e-21
 Identities = 82/199 (41%), Positives = 94/199 (47%), Gaps = 10/199 (5%)
 Frame = -3

Query: 568 TGGRNR---PPQSSRRHHKXXXXXXXXXXXXXXXXXXXRYLGRKLSGSQVPLKKRLDPPE 398
           T GRNR   PP  SRR H                     Y  RK SGSQVPLKKRLDP E
Sbjct: 17  TSGRNRHSLPP--SRRRHDGAYSDGGSDSRDDDSDDELNYASRKPSGSQVPLKKRLDPSE 74

Query: 397 RXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD--LYKDDDDRQKLAEMTELQREMTLAERA 224
           R                                LYKD+DDR+KL+EMTELQREM L++RA
Sbjct: 75  RDDDLGSQEEADDDDGHSDHDGDSSDESNIGDDLYKDEDDRRKLSEMTELQREMILSDRA 134

Query: 223 AKKSDRSLHDKMIKDR-----NPPRKQSSPPSHSRGXXXXXXXXXXXXXXXXALNEIRAK 59
            KK D++L  K+   R     + PRKQS P S SR                 ALNE+R  
Sbjct: 135 TKKDDKNLLGKIASKREKGKVSVPRKQSPPMSSSR--MRASARSADRSAKNDALNELR-- 190

Query: 58  QAKRARQQDPEGQWKLRDA 2
            AKR +QQDPE   KLR+A
Sbjct: 191 -AKRLKQQDPEAHRKLREA 208


>ref|XP_003529309.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform
           X1 [Glycine max] gi|571466984|ref|XP_006583809.1|
           PREDICTED: RNA polymerase-associated protein RTF1
           homolog isoform X2 [Glycine max]
          Length = 656

 Score =  105 bits (262), Expect = 8e-21
 Identities = 81/196 (41%), Positives = 93/196 (47%), Gaps = 7/196 (3%)
 Frame = -3

Query: 568 TGGRNRPP-QSSRRHHKXXXXXXXXXXXXXXXXXXXRYLGRKLSGSQVPLKKRLDPPER- 395
           T GRNR    SSRR H                     Y  RK SGSQVPLKKRLDP ER 
Sbjct: 17  TAGRNRHSLPSSRRRHDGAYSDGGSDSRDEDSDDELNYASRKPSGSQVPLKKRLDPTERD 76

Query: 394 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLYKDDDDRQKLAEMTELQREMTLAERAAKK 215
                                        DLYKD+DDR+KL+EMTELQREM L++RA KK
Sbjct: 77  DDLGSQEEADDDGRSDCDGDSSDESNIGDDLYKDEDDRRKLSEMTELQREMILSDRATKK 136

Query: 214 SDRSLHDKMIKDRNP-----PRKQSSPPSHSRGXXXXXXXXXXXXXXXXALNEIRAKQAK 50
            D++L  K+   R       PRKQS P S SR                 ALNE+R   AK
Sbjct: 137 DDKNLLGKIASKREKGKVAVPRKQSPPMSSSR--MRASARSADRSAKNDALNELR---AK 191

Query: 49  RARQQDPEGQWKLRDA 2
           R +QQDPE   +LR+A
Sbjct: 192 RLKQQDPEAHRRLREA 207


>ref|XP_003542767.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Glycine
           max]
          Length = 656

 Score =  105 bits (261), Expect = 1e-20
 Identities = 82/198 (41%), Positives = 94/198 (47%), Gaps = 9/198 (4%)
 Frame = -3

Query: 568 TGGRNR---PPQSSRRHHKXXXXXXXXXXXXXXXXXXXRYLGRKLSGSQVPLKKRLDPPE 398
           T GRNR   PP  SRR H                     Y  RK SGSQVPLKKRLDP E
Sbjct: 17  TAGRNRHSLPP--SRRRHDGAYSDGGSDSRDDDSDDELNYASRKPSGSQVPLKKRLDPTE 74

Query: 397 R-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLYKDDDDRQKLAEMTELQREMTLAERAA 221
           R                              DLYKD+DDR+KL+EMTELQREM L++RA 
Sbjct: 75  RDDDLGSQEEADDDGRSDHDGDSSDESNIGDDLYKDEDDRRKLSEMTELQREMILSDRAT 134

Query: 220 KKSDRSLHDKMIKDRN-----PPRKQSSPPSHSRGXXXXXXXXXXXXXXXXALNEIRAKQ 56
           KK D++L  K+   R       PRKQS P S SR                 ALNE+R   
Sbjct: 135 KKDDKNLLGKIASKREKGKAAAPRKQSPPMSSSR--MRASARSADRSAKNDALNELR--- 189

Query: 55  AKRARQQDPEGQWKLRDA 2
           AKR +QQDPE   +LR+A
Sbjct: 190 AKRLKQQDPEAHRRLREA 207


>ref|XP_004149150.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Cucumis
           sativus] gi|449517636|ref|XP_004165851.1| PREDICTED: RNA
           polymerase-associated protein RTF1 homolog [Cucumis
           sativus]
          Length = 660

 Score =  103 bits (257), Expect = 3e-20
 Identities = 77/196 (39%), Positives = 94/196 (47%), Gaps = 9/196 (4%)
 Frame = -3

Query: 562 GRNR---PPQSSRRHHKXXXXXXXXXXXXXXXXXXXRYLGRKLSGSQVPLKKRLDPPERX 392
           GRNR   PP  SRR  +                    Y  RK SGSQVPLKKRLDP ER 
Sbjct: 19  GRNRHSHPP--SRRQREGSYSDAGSDSRDDDSDDDRGYASRKPSGSQVPLKKRLDPTERD 76

Query: 391 XXXXXXXXXXXXXXXXXXXXXXXXXXXXD--LYKDDDDRQKLAEMTELQREMTLAERAAK 218
                                          LYKDDDDR+KLA M+ELQREM L++RA+K
Sbjct: 77  DDGGSQEEGEDEDVGSEREGDSSDESDVGDDLYKDDDDRRKLAGMSELQREMILSDRASK 136

Query: 217 KSDRSLHD----KMIKDRNPPRKQSSPPSHSRGXXXXXXXXXXXXXXXXALNEIRAKQAK 50
           K+D+ L++    KM K ++ P ++ +PP  S                  ALNE+R   AK
Sbjct: 137 KNDKHLYESLRAKMDKGKSAPSRKETPPLPSSRIRSSARSADRAAAKDDALNELR---AK 193

Query: 49  RARQQDPEGQWKLRDA 2
           R +QQDPE   KLRDA
Sbjct: 194 RLKQQDPEAHRKLRDA 209


>gb|EOY28313.1| PAF1 complex component isoform 1 [Theobroma cacao]
           gi|508781058|gb|EOY28314.1| PAF1 complex component
           isoform 1 [Theobroma cacao]
          Length = 660

 Score =  100 bits (249), Expect = 3e-19
 Identities = 76/199 (38%), Positives = 93/199 (46%), Gaps = 10/199 (5%)
 Frame = -3

Query: 568 TGGRNR---PPQSSRRHHKXXXXXXXXXXXXXXXXXXXRYLGRKLSGSQVPLKKRLDPPE 398
           TGGRNR   PP  SRR  +                    Y  RK SGSQVPLKKRLDP E
Sbjct: 17  TGGRNRHSLPP--SRRRREGSYSDGGSDSRDDDSDDDHGYASRKPSGSQVPLKKRLDPAE 74

Query: 397 RXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD--LYKDDDDRQKLAEMTELQREMTLAERA 224
           R                                LYK++DDR+KLA+MTEL+RE+ L+ERA
Sbjct: 75  RDDDQGSQEEGDYDDGVSVHEGDSSDESDVGDDLYKNEDDRRKLAQMTELERELILSERA 134

Query: 223 AKKSDRSLHDKMIKDR-----NPPRKQSSPPSHSRGXXXXXXXXXXXXXXXXALNEIRAK 59
            K+ D+   +K+   R     +  RK++ P   SRG                ALNE+R  
Sbjct: 135 DKRGDKKFTEKIRSKRENDRPSRSRKETPPLPSSRGVRSSARSADRAAAKDDALNELR-- 192

Query: 58  QAKRARQQDPEGQWKLRDA 2
            AKR +QQDPE   KLRDA
Sbjct: 193 -AKRLKQQDPEAHRKLRDA 210


>ref|XP_002519028.1| RNA polymerase-associated protein RTF1, putative [Ricinus communis]
           gi|223541691|gb|EEF43239.1| RNA polymerase-associated
           protein RTF1, putative [Ricinus communis]
          Length = 660

 Score = 97.1 bits (240), Expect = 3e-18
 Identities = 74/199 (37%), Positives = 93/199 (46%), Gaps = 10/199 (5%)
 Frame = -3

Query: 568 TGGRNR---PPQSSRRHHKXXXXXXXXXXXXXXXXXXXRYLGRKLSGSQVPLKKRLDPPE 398
           T GRNR   PP  SRR  +                    Y  RK SGSQVPLKKRLDP E
Sbjct: 17  TSGRNRNALPP--SRRRREGSYSDGGSDSRDDDSDDDRGYSSRKPSGSQVPLKKRLDPTE 74

Query: 397 RXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD--LYKDDDDRQKLAEMTELQREMTLAERA 224
           R                                LYK++DDR+KLA+M+EL+REM L+ERA
Sbjct: 75  RDDDQGSQDEGDYDDGNSDREGDSSDGSDVGEDLYKNEDDRRKLAQMSELEREMILSERA 134

Query: 223 AKKSDRSLHDKMIKDRNP-----PRKQSSPPSHSRGXXXXXXXXXXXXXXXXALNEIRAK 59
            KK D++L +++   R        RK++ P   SRG                ALNE++  
Sbjct: 135 DKKGDKNLTERIRSKRESERTTRSRKETPPLPSSRGVRTSARSADRAAAKDDALNELK-- 192

Query: 58  QAKRARQQDPEGQWKLRDA 2
            A+R +QQDPE   KLRDA
Sbjct: 193 -ARRLKQQDPEAHRKLRDA 210


>ref|XP_002316628.2| plus-3 domain-containing family protein [Populus trichocarpa]
           gi|550327599|gb|EEE97240.2| plus-3 domain-containing
           family protein [Populus trichocarpa]
          Length = 664

 Score = 96.3 bits (238), Expect = 5e-18
 Identities = 73/193 (37%), Positives = 89/193 (46%), Gaps = 7/193 (3%)
 Frame = -3

Query: 559 RNRPPQSSRRHHKXXXXXXXXXXXXXXXXXXXRYLGRKLSGSQVPLKKRLDPPERXXXXX 380
           RN  P S RR  +                    Y  RK SGSQVPLKKRL+  ER     
Sbjct: 22  RNSLPPSRRRKQEGSYSDGGSDSRDDGSDDDRGYASRKPSGSQVPLKKRLETNERDDEGG 81

Query: 379 XXXXXXXXXXXXXXXXXXXXXXXXD--LYKDDDDRQKLAEMTELQREMTLAERAAKKSDR 206
                                      LYKD+DDRQKLA+M+EL RE+ LA+RA KK D+
Sbjct: 82  SQEEGDYDDGGSDREGESSDGSDIGDDLYKDEDDRQKLAQMSELDRELILADRADKKGDK 141

Query: 205 SLHDKM--IKDRNPP---RKQSSPPSHSRGXXXXXXXXXXXXXXXXALNEIRAKQAKRAR 41
            L +K+   +D + P   RK++ P   SRG                ALNE+R   AKR +
Sbjct: 142 HLTEKIRSKRDNDKPTRSRKETPPLPSSRGVRSSARSADRAAAKDDALNELR---AKRLK 198

Query: 40  QQDPEGQWKLRDA 2
           QQDPE   KLRDA
Sbjct: 199 QQDPEAHRKLRDA 211


>gb|EXB82802.1| RNA polymerase-associated protein RTF1-like protein [Morus
           notabilis]
          Length = 658

 Score = 95.1 bits (235), Expect = 1e-17
 Identities = 76/197 (38%), Positives = 91/197 (46%), Gaps = 8/197 (4%)
 Frame = -3

Query: 568 TGGRNR---PPQSSRRHHKXXXXXXXXXXXXXXXXXXXRYLGRKLSGSQVPLKKRLDPPE 398
           + GRNR   PP  SRR  +                    Y  RK SGSQVPLKKRLDP E
Sbjct: 17  SAGRNRHSIPP--SRRRREGSYSDGGSDSRDDDSDDDRGYANRKPSGSQVPLKKRLDPTE 74

Query: 397 RXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLYKDDDDRQKLAEMTELQREMTLAERAAK 218
                                          LYKDDDDR+KLAEMTELQREM L +RA+K
Sbjct: 75  MDDDQGSEEEGDDDRGSDREGDSESDVGSD-LYKDDDDRRKLAEMTELQREMILLDRASK 133

Query: 217 KSDRSLHDKM-----IKDRNPPRKQSSPPSHSRGXXXXXXXXXXXXXXXXALNEIRAKQA 53
           K D++L +K+      K +    ++ +P   SR                 ALNE+R   A
Sbjct: 134 KEDKNLKEKLRPKWDNKGKATQSRKETPLPSSR-VRSSARSADRAAAKDDALNELR---A 189

Query: 52  KRARQQDPEGQWKLRDA 2
           KR +QQDPE   KLRDA
Sbjct: 190 KRLKQQDPEAHGKLRDA 206


>ref|XP_004505022.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform
           X1 [Cicer arietinum] gi|502142571|ref|XP_004505023.1|
           PREDICTED: RNA polymerase-associated protein RTF1
           homolog isoform X2 [Cicer arietinum]
          Length = 658

 Score = 94.4 bits (233), Expect = 2e-17
 Identities = 77/197 (39%), Positives = 92/197 (46%), Gaps = 10/197 (5%)
 Frame = -3

Query: 562 GRNR---PPQSSRRHHKXXXXXXXXXXXXXXXXXXXRYLGRKLSGSQVPLKKRLDPPERX 392
           GRNR   PP  SRR                       Y  RK SGSQVPLKKRLDP ER 
Sbjct: 20  GRNRHSIPP--SRRRRDGSYSDGGSDSRDDDSDDELNYPSRKPSGSQVPLKKRLDPTERD 77

Query: 391 XXXXXXXXXXXXXXXXXXXXXXXXXXXXD--LYKDDDDRQKLAEMTELQREMTLAERAAK 218
                                          LYKD+DDR+KL+EM+ELQREM L++RA+K
Sbjct: 78  DDLGSQEEADDDDGRSDREGDSSDESNIGDDLYKDEDDRRKLSEMSELQREMILSDRASK 137

Query: 217 KSDRSLHDKMIKDRNPPR-----KQSSPPSHSRGXXXXXXXXXXXXXXXXALNEIRAKQA 53
           K D+SL  K+   R   +     KQS P S SR                 ALNE+R   A
Sbjct: 138 KDDKSLLGKIASKREKGKAIMTGKQSPPLSSSR--MRASARSADRSAKNVALNELR---A 192

Query: 52  KRARQQDPEGQWKLRDA 2
           KR +QQDPE + +LR+A
Sbjct: 193 KRLKQQDPEARRRLREA 209


>gb|EMJ18830.1| hypothetical protein PRUPE_ppa002666mg [Prunus persica]
          Length = 646

 Score = 92.4 bits (228), Expect = 7e-17
 Identities = 65/154 (42%), Positives = 80/154 (51%), Gaps = 1/154 (0%)
 Frame = -3

Query: 460 YLGRKLSGSQVPLKKRLDPPERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD-LYKDDDD 284
           Y  RK SG+QVPLKKRLDP E                                LYKD+DD
Sbjct: 54  YASRKPSGTQVPLKKRLDPTEMDDEQGSQEEGDYNDSGSDRGGDSNESDVGSDLYKDEDD 113

Query: 283 RQKLAEMTELQREMTLAERAAKKSDRSLHDKMIKDRNPPRKQSSPPSHSRGXXXXXXXXX 104
           R+KLAEM+ELQRE+ L++RA KK D+SL     K++  P+K+ +PP  S           
Sbjct: 114 RRKLAEMSELQRELILSDRAQKKDDKSL-----KEKFRPKKE-TPPLPSSRVRSSARSAD 167

Query: 103 XXXXXXXALNEIRAKQAKRARQQDPEGQWKLRDA 2
                  ALNE+R   AKR +QQDPE   KLRDA
Sbjct: 168 RAAAKDDALNELR---AKRLKQQDPEAHRKLRDA 198


>ref|XP_002888111.1| At1g61040/T7P1_17 [Arabidopsis lyrata subsp. lyrata]
           gi|297333952|gb|EFH64370.1| At1g61040/T7P1_17
           [Arabidopsis lyrata subsp. lyrata]
          Length = 643

 Score = 92.4 bits (228), Expect = 7e-17
 Identities = 71/194 (36%), Positives = 87/194 (44%), Gaps = 5/194 (2%)
 Frame = -3

Query: 568 TGGRNRPPQSSRRHHKXXXXXXXXXXXXXXXXXXXRYLGRKLSGSQVPLKKRLDPPERXX 389
           + GR+R P SSRR  +                    Y  RK SGSQVPLKKRL+      
Sbjct: 17  SAGRSRHPPSSRR--REGSYSDGSSDSRDDSDEDRGYASRKPSGSQVPLKKRLEAEREDR 74

Query: 388 XXXXXXXXXXXXXXXXXXXXXXXXXXXDLYKDDDDRQKLAEMTELQREMTLAERAAKKSD 209
                                      DLYK+++DRQKLA MTE QREM LAERA KK D
Sbjct: 75  AARVEGGYGDGPSDREGDSSEESDFGDDLYKNEEDRQKLAGMTEFQREMILAERADKKGD 134

Query: 208 RSLHDKMIKDRN-----PPRKQSSPPSHSRGXXXXXXXXXXXXXXXXALNEIRAKQAKRA 44
           ++  +K+   R        +K++ P   SRG                ALNE+R   AKR 
Sbjct: 135 KNFTEKLRSKRENEKTPVSKKETQPLPASRGVRSSARSADRAAAKDDALNELR---AKRM 191

Query: 43  RQQDPEGQWKLRDA 2
           +QQDP    KLRDA
Sbjct: 192 KQQDPAALRKLRDA 205


>ref|NP_176299.1| Paf1C-like transcription factor [Arabidopsis thaliana]
           gi|12323334|gb|AAG51642.1|AC018908_8 unknown protein;
           78902-80833 [Arabidopsis thaliana]
           gi|332195649|gb|AEE33770.1| Paf1C-like transcription
           factor [Arabidopsis thaliana]
          Length = 643

 Score = 91.7 bits (226), Expect = 1e-16
 Identities = 70/194 (36%), Positives = 87/194 (44%), Gaps = 5/194 (2%)
 Frame = -3

Query: 568 TGGRNRPPQSSRRHHKXXXXXXXXXXXXXXXXXXXRYLGRKLSGSQVPLKKRLDPPERXX 389
           + GR+R P SSRR  +                    Y  RK SGSQVPLKKRL+      
Sbjct: 17  SAGRSRHPPSSRR--REGSYSDGSSDSRDDSDEDRGYASRKPSGSQVPLKKRLEAEREDR 74

Query: 388 XXXXXXXXXXXXXXXXXXXXXXXXXXXDLYKDDDDRQKLAEMTELQREMTLAERAAKKSD 209
                                      DLYK+++DRQKLA MTE QREM L+ERA KK D
Sbjct: 75  AARVEGGYGDGPSDREGDSSEESDFGDDLYKNEEDRQKLAGMTEFQREMILSERADKKGD 134

Query: 208 RSLHDKMIKDRNP-----PRKQSSPPSHSRGXXXXXXXXXXXXXXXXALNEIRAKQAKRA 44
           ++  +K+   R        +K++ P   SRG                ALNE+R   AKR 
Sbjct: 135 KNFTEKLRSKRESEKTPVSKKETQPLPASRGVRSSARSADRAAAKDDALNELR---AKRM 191

Query: 43  RQQDPEGQWKLRDA 2
           +QQDP    KLRDA
Sbjct: 192 KQQDPAALRKLRDA 205


>ref|XP_002305685.1| plus-3 domain-containing family protein [Populus trichocarpa]
           gi|222848649|gb|EEE86196.1| plus-3 domain-containing
           family protein [Populus trichocarpa]
          Length = 662

 Score = 91.3 bits (225), Expect = 2e-16
 Identities = 65/159 (40%), Positives = 81/159 (50%), Gaps = 7/159 (4%)
 Frame = -3

Query: 460 YLGRKLSGSQVPLKKRLDPPERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD--LYKDDD 287
           Y  RK SGSQVPLKKRL+  ER                                LYKD+D
Sbjct: 55  YANRKPSGSQVPLKKRLETNERDGEEGSQDEGDYDGGGSDREGGSSDESDIGDDLYKDED 114

Query: 286 DRQKLAEMTELQREMTLAERAAKKSDRSLHDK--MIKDRNPP---RKQSSPPSHSRGXXX 122
           DR+KLA+M+EL RE+ LA+RA KK D+ L +K  + +D + P   RK++ P   SRG   
Sbjct: 115 DRKKLAQMSELDRELILADRADKKGDKHLTEKIRLKRDNDKPTRSRKETPPLPSSRGVRS 174

Query: 121 XXXXXXXXXXXXXALNEIRAKQAKRARQQDPEGQWKLRD 5
                        ALNE+R   AKR +QQDPE   KLRD
Sbjct: 175 SARSADRAAAKDDALNELR---AKRLKQQDPEAHRKLRD 210


>ref|XP_004304724.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Fragaria
           vesca subsp. vesca]
          Length = 619

 Score = 90.9 bits (224), Expect = 2e-16
 Identities = 65/157 (41%), Positives = 79/157 (50%), Gaps = 5/157 (3%)
 Frame = -3

Query: 460 YLGRKLSGSQVPLKKRLDPPE-RXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLYKDDDD 284
           Y  RK SGSQVPLKKRLDP E                               DLYKD+DD
Sbjct: 54  YASRKPSGSQVPLKKRLDPSEVDDERDSQDEGDYNDSGSDRGGESNESDVGSDLYKDEDD 113

Query: 283 RQKLAEMTELQREMTLAERAAKKSDRSLHDKM----IKDRNPPRKQSSPPSHSRGXXXXX 116
           R+KLAEM+ELQRE+ L++RA KK D+SL +K      K +    ++ +PP  S       
Sbjct: 114 RRKLAEMSELQRELILSDRAQKKDDKSLKEKFRPKWDKGKATQSRKVTPPLPSSRVRSSA 173

Query: 115 XXXXXXXXXXXALNEIRAKQAKRARQQDPEGQWKLRD 5
                      ALNE+R   AKR +QQDPE   KLRD
Sbjct: 174 RSADRAAAKDDALNELR---AKRLKQQDPEAHRKLRD 207


>gb|AAM10312.1| At1g61040/T7P1_17 [Arabidopsis thaliana]
          Length = 643

 Score = 89.4 bits (220), Expect = 6e-16
 Identities = 69/194 (35%), Positives = 86/194 (44%), Gaps = 5/194 (2%)
 Frame = -3

Query: 568 TGGRNRPPQSSRRHHKXXXXXXXXXXXXXXXXXXXRYLGRKLSGSQVPLKKRLDPPERXX 389
           + GR+  P SSRR  +                    Y  RK SGSQVPLKKRL+      
Sbjct: 17  SAGRSSHPPSSRR--REGSYSDGSSDSRDDSDEDRGYASRKPSGSQVPLKKRLEAEREDR 74

Query: 388 XXXXXXXXXXXXXXXXXXXXXXXXXXXDLYKDDDDRQKLAEMTELQREMTLAERAAKKSD 209
                                      DLYK+++DRQKLA MTE QREM L+ERA KK D
Sbjct: 75  AARVEGGYGDGPSDREGDSSEESDFGDDLYKNEEDRQKLAGMTEFQREMILSERADKKGD 134

Query: 208 RSLHDKMIKDRNP-----PRKQSSPPSHSRGXXXXXXXXXXXXXXXXALNEIRAKQAKRA 44
           ++  +K+   R        +K++ P   SRG                ALNE+R   AKR 
Sbjct: 135 KNFTEKLRSKRESEKTPVSKKETQPLPASRGVRSSARSADRAAAKDDALNELR---AKRM 191

Query: 43  RQQDPEGQWKLRDA 2
           +QQDP    KLRDA
Sbjct: 192 KQQDPAALRKLRDA 205


>ref|XP_006392066.1| hypothetical protein EUTSA_v10023338mg [Eutrema salsugineum]
           gi|557088572|gb|ESQ29352.1| hypothetical protein
           EUTSA_v10023338mg [Eutrema salsugineum]
          Length = 644

 Score = 89.0 bits (219), Expect = 8e-16
 Identities = 64/158 (40%), Positives = 78/158 (49%), Gaps = 5/158 (3%)
 Frame = -3

Query: 460 YLGRKLSGSQVPLKKRLDPPERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLYKDDDDR 281
           Y  RK SGSQVPLKKRL+                                 DLYK+++DR
Sbjct: 53  YASRKPSGSQVPLKKRLEAEREDRAARDEAGYGDGPSDREGDSSEESDFGDDLYKNEEDR 112

Query: 280 QKLAEMTELQREMTLAERAAKKSDRS----LHDKMIKDRNP-PRKQSSPPSHSRGXXXXX 116
           QKLA MTE QREM LAERA KK D++    L  K  K++ P  +K++ P   SRG     
Sbjct: 113 QKLAGMTEFQREMILAERADKKGDKNFTEKLRSKREKEKTPVSKKETQPLPASRGVRSSA 172

Query: 115 XXXXXXXXXXXALNEIRAKQAKRARQQDPEGQWKLRDA 2
                      ALNE+R   AKR +QQ+P    KLRDA
Sbjct: 173 RSADRAAAKDDALNELR---AKRMKQQEPASLRKLRDA 207


>ref|XP_004293522.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Fragaria
           vesca subsp. vesca]
          Length = 657

 Score = 89.0 bits (219), Expect = 8e-16
 Identities = 64/157 (40%), Positives = 79/157 (50%), Gaps = 5/157 (3%)
 Frame = -3

Query: 460 YLGRKLSGSQVPLKKRLDPPE-RXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLYKDDDD 284
           Y  RK SGSQVPLKKRLDP E                               DLYKD++D
Sbjct: 54  YASRKPSGSQVPLKKRLDPSEVGDEHDSQDEGDYNDSGSDRGGESNESDVGSDLYKDEND 113

Query: 283 RQKLAEMTELQREMTLAERAAKKSDRSLHDKM----IKDRNPPRKQSSPPSHSRGXXXXX 116
           R+KLAEM+ELQRE+ L++RA KK D+SL +K      K +    ++ +PP  S       
Sbjct: 114 RRKLAEMSELQRELILSDRAQKKDDKSLKEKFRPKWDKGKATQSRKVTPPLPSSRVRSSA 173

Query: 115 XXXXXXXXXXXALNEIRAKQAKRARQQDPEGQWKLRD 5
                      ALNE+R   AKR +QQDPE   KLRD
Sbjct: 174 RSADRAAAKDDALNELR---AKRLKQQDPEAHRKLRD 207


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