BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atropa21_contig00037675
         (502 letters)

Database: nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAT38724.1| Putative retrotransposon protein, identical [Sola...    60   4e-07
gb|AAT38744.1| Putative gag-pol polyprotein, identical [Solanum ...    60   4e-07
gb|AAV31171.1| Putative polyprotein, identical [Solanum tuberosum]     58   1e-06
gb|AAT66771.2| Putative polyprotein, identical [Solanum demissum]      57   2e-06
gb|ADU56211.1| gag-pol polyprotein [Solanum lycopersicum]              53   5e-06

>gb|AAT38724.1| Putative retrotransposon protein, identical [Solanum demissum]
          Length = 1602

 Score = 59.7 bits (143), Expect = 4e-07
 Identities = 40/104 (38%), Positives = 57/104 (54%), Gaps = 5/104 (4%)
 Frame = -1

Query: 298  YWISL-RCLGRKIFLKSSEVIGYHL*YRFSSSNKCQTYRTIQTLKYILSACVLNF*S*MR 122
            +W S  + LG K+ L ++          F      Q  RTIQTL+ +L ACV++F S   
Sbjct: 1322 FWKSFQKGLGSKVSLSTA----------FHPQTDGQAERTIQTLEDMLRACVIDFKS--- 1368

Query: 121  *SFASH*VNCKYRY----HASIKTTPFENLYGRRYRSPIGWYEV 2
             ++  H    ++ Y    H+SI+  P+E LYGRR RSPIGW+EV
Sbjct: 1369 -NWDDHLPLIEFAYNNSYHSSIQMAPYEALYGRRCRSPIGWFEV 1411


>gb|AAT38744.1| Putative gag-pol polyprotein, identical [Solanum demissum]
          Length = 1515

 Score = 59.7 bits (143), Expect = 4e-07
 Identities = 40/104 (38%), Positives = 57/104 (54%), Gaps = 5/104 (4%)
 Frame = -1

Query: 298  YWISL-RCLGRKIFLKSSEVIGYHL*YRFSSSNKCQTYRTIQTLKYILSACVLNF*S*MR 122
            +W S  + LG K+ L ++          F      Q  RTIQTL+ +L ACV++F S   
Sbjct: 1316 FWKSFQKGLGSKVSLSTA----------FHPQTDGQAERTIQTLEDMLRACVIDFKS--- 1362

Query: 121  *SFASH*VNCKYRY----HASIKTTPFENLYGRRYRSPIGWYEV 2
             ++  H    ++ Y    H+SI+  P+E LYGRR RSPIGW+EV
Sbjct: 1363 -NWDDHLPLIEFAYNNSYHSSIQMAPYEALYGRRCRSPIGWFEV 1405


>gb|AAV31171.1| Putative polyprotein, identical [Solanum tuberosum]
          Length = 1487

 Score = 58.2 bits (139), Expect = 1e-06
 Identities = 32/69 (46%), Positives = 45/69 (65%), Gaps = 4/69 (5%)
 Frame = -1

Query: 196  QTYRTIQTLKYILSACVLNF*S*MR*SFASH*VNCKYRY----HASIKTTPFENLYGRRY 29
            Q  RTIQTL+ +L ACV++F    + ++  H    ++ Y    H+SI+  P+E LYGRR 
Sbjct: 1228 QAERTIQTLEDMLRACVIDF----KGNWDDHLPLIEFAYNNSYHSSIQMAPYEALYGRRC 1283

Query: 28   RSPIGWYEV 2
            RSPIGW+EV
Sbjct: 1284 RSPIGWFEV 1292


>gb|AAT66771.2| Putative polyprotein, identical [Solanum demissum]
          Length = 1771

 Score = 57.4 bits (137), Expect = 2e-06
 Identities = 32/76 (42%), Positives = 41/76 (53%)
 Frame = -1

Query: 232  HL*YRFSSSNKCQTYRTIQTLKYILSACVLNF*S*MR*SFASH*VNCKYRYHASIKTTPF 53
            HL   F      Q+ RTIQ L+ +L ACV++F                  YH+SI+  PF
Sbjct: 1505 HLSTSFHPQTDGQSERTIQVLEDMLRACVMDFGGQWEQFLPLAEFAYNNSYHSSIQMAPF 1564

Query: 52   ENLYGRRYRSPIGWYE 5
            E LYGRR RSP+GW+E
Sbjct: 1565 EALYGRRCRSPVGWFE 1580


>gb|ADU56211.1| gag-pol polyprotein [Solanum lycopersicum]
          Length = 367

 Score = 53.1 bits (126), Expect(2) = 5e-06
 Identities = 28/64 (43%), Positives = 37/64 (57%)
 Frame = -1

Query: 196 QTYRTIQTLKYILSACVLNF*S*MR*SFASH*VNCKYRYHASIKTTPFENLYGRRYRSPI 17
           Q+ RTIQ L+ ++ ACV+ F             +    YH+SI   PFE LYGRR RSPI
Sbjct: 97  QSERTIQVLEDMICACVIEFGGHWDSFLPLAEFSYNNSYHSSIDMAPFEALYGRRCRSPI 156

Query: 16  GWYE 5
           GW++
Sbjct: 157 GWFD 160



 Score = 22.7 bits (47), Expect(2) = 5e-06
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
 Frame = -2

Query: 360 AEDYAKLYIQKSFRFHRASMPIGLV*D---A*VAKYF*NLQK*LD--IIYSTVFHHQTN 199
           AE  AK+YI +  R H   +P+ ++ D      +K++  L   L   +  ST FH QT+
Sbjct: 39  AEKLAKIYISEIVRLH--GVPLSIISDRGTQFTSKFWKILHAELGTRLDLSTAFHPQTD 95