BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atropa21_contig00037635
         (678 letters)

Database: nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006343535.1| PREDICTED: uncharacterized protein LOC102578...    97   9e-36
gb|AAU10819.1| putative polyprotein [Oryza sativa Japonica Group...    84   4e-30
gb|AAO23093.1| putative polyprotein [Oryza sativa Japonica Group...    72   2e-25
gb|EMS54188.1| Putative late blight resistance protein-like prot...    84   1e-21
ref|XP_004966848.1| PREDICTED: uncharacterized protein LOC101777...    94   4e-17
emb|CAN78447.1| hypothetical protein VITISV_026810 [Vitis vinifera]    69   7e-17
gb|EEC82022.1| hypothetical protein OsI_25984 [Oryza sativa Indi...    91   4e-16
gb|ABW81031.1| LTRGag-pol-polymerase 3 [Arabidopsis lyrata subsp...    89   1e-15
gb|AEJ07955.1| putative polyprotein [Sorghum propinquum]               87   5e-15
ref|XP_004986808.1| PREDICTED: uncharacterized protein LOC101773...    85   2e-14
gb|AAT93988.1| putative polyprotein [Oryza sativa Japonica Group]      85   2e-14
gb|ABA93844.2| retrotransposon protein, putative, unclassified [...    84   3e-14
gb|AAM74347.1|AC115686_14 Putative retroelement [Oryza sativa Ja...    82   2e-13
gb|AAM08751.1|AC025098_18 Putative copia-type polyprotein [Oryza...    78   3e-12
dbj|BAA78426.1| polyprotein [Arabidopsis thaliana]                     78   3e-12
dbj|BAA78424.1| polyprotein [Arabidopsis thaliana] gi|404433798|...    78   3e-12
dbj|BAM42650.1| Polyprotein [Arabidopsis thaliana]                     78   3e-12
dbj|BAM42649.1| Polyprotein [Arabidopsis thaliana]                     78   3e-12
dbj|BAM42647.1| polyprotein [Arabidopsis thaliana] gi|403406144|...    78   3e-12
dbj|BAM42646.1| polyprotein [Arabidopsis thaliana]                     78   3e-12

>ref|XP_006343535.1| PREDICTED: uncharacterized protein LOC102578284 [Solanum tuberosum]
          Length = 614

 Score = 96.7 bits (239), Expect(2) = 9e-36
 Identities = 44/88 (50%), Positives = 62/88 (70%)
 Frame = +1

Query: 13  PFNLNKVLYAPNIIKNLISYRKFSIDNYVSIELDPFDFSMKDLRTGIPLTRCNSIGDLYP 192
           P  LN VL+AP+++KNL+S RKF+ DN VS+E DPF F +KD +TG P+ RC S G LYP
Sbjct: 433 PLQLNNVLHAPHLVKNLVSIRKFTTDNSVSVEFDPFGFPVKDFQTGRPVMRCESRGKLYP 492

Query: 193 LSLNSAAKVNYPTSLTAVSPSTWHNRSG 276
           ++   A    +P++  A++PS WH+R G
Sbjct: 493 ITNPRA----FPSTFAALAPSLWHDRLG 516



 Score = 80.5 bits (197), Expect(2) = 9e-36
 Identities = 39/79 (49%), Positives = 52/79 (65%), Gaps = 1/79 (1%)
 Frame = +3

Query: 270 VGHPRLKVFNSFHNFNFINYNS-ESS*DCYSCPLGKYVRLLFNSSHSITYSPFDIIHADL 446
           +GHP   V NS      I  N  + S  C+SCPLGK+V+L F +S+S T  PFDIIH+DL
Sbjct: 515 LGHPGAPVLNSLRKNKLIECNQIKDSRICHSCPLGKHVKLSFYASNSSTIMPFDIIHSDL 574

Query: 447 WTSPIPSILGHKYYLILLD 503
           WTS + S  GH+YY++ +D
Sbjct: 575 WTSLVLSSSGHRYYVLFVD 593


>gb|AAU10819.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|53981353|gb|AAV24907.1| hypothetical protein [Oryza
            sativa Japonica Group]
          Length = 1679

 Score = 84.3 bits (207), Expect(2) = 4e-30
 Identities = 49/111 (44%), Positives = 65/111 (58%), Gaps = 4/111 (3%)
 Frame = +3

Query: 351  CYSCPLGKYVRLLFNSSHSITYSPFDIIHADLWTSPIPSILGHKYYLILLD----*FFSL 518
            C++C LG++VRL F SS S   + F++ H DLWTSP+ S  G KYYL++LD      ++ 
Sbjct: 728  CHACQLGRHVRLPFASSTSRASTNFELFHCDLWTSPVVSASGFKYYLVILDDCSHYVWTF 787

Query: 519  YLGVSSQT*ITSVLYISLFKTYVNT*F*KSIKSVQCDNRCEFGNSNFHQFF 671
             L   S T  T    +S F  YV T F  +I+S+QCDN  EF NS    FF
Sbjct: 788  PLRFKSDTFTT----LSHFFAYVKTQFATNIRSIQCDNGREFDNSAARTFF 834



 Score = 73.9 bits (180), Expect(2) = 4e-30
 Identities = 44/92 (47%), Positives = 55/92 (59%), Gaps = 2/92 (2%)
 Frame = +1

Query: 7   NHPFNLNKVLYAPNIIKNLISYRKFSIDNYVSIELDPFDFSMKDLRTGIPLTRCNSIGDL 186
           N  F L  +L +P IIKNLIS R+F IDN+ S+E DPF FS+KDLRT   + R NS G L
Sbjct: 613 NCSFTLRDILCSPAIIKNLISVRRFVIDNWCSVEFDPFGFSVKDLRTRTVIARFNSSGPL 672

Query: 187 YPLSLNSAAKVNYPTSLTAVSPS--TWHNRSG 276
           Y L  ++       T+L A S +   WH R G
Sbjct: 673 YSLH-HALPPPPAATALLANSSTDLLWHRRLG 703


>gb|AAO23093.1| putative polyprotein [Oryza sativa Japonica Group]
           gi|108709048|gb|ABF96843.1| retrotransposon protein,
           putative, Ty1-copia subclass [Oryza sativa Japonica
           Group]
          Length = 594

 Score = 72.0 bits (175), Expect(2) = 2e-25
 Identities = 33/80 (41%), Positives = 51/80 (63%)
 Frame = +3

Query: 270 VGHPRLKVFNSFHNFNFINYNSESS*DCYSCPLGKYVRLLFNSSHSITYSPFDIIHADLW 449
           +GHP      +  + + I  +  ++  C++C LGK+ RL FN S S T SPF+++H D+W
Sbjct: 487 LGHPGPTAVTTLQHLSAIPRSKTNNSLCHACQLGKHTRLPFNKSTSSTSSPFELVHCDVW 546

Query: 450 TSPIPSILGHKYYLILLD*F 509
           TS + SI G K+YL+L+D F
Sbjct: 547 TSLVMSISGFKFYLVLVDDF 566



 Score = 70.5 bits (171), Expect(2) = 2e-25
 Identities = 41/90 (45%), Positives = 55/90 (61%), Gaps = 3/90 (3%)
 Frame = +1

Query: 16  FNLNKVLYAPNIIKNLISYRKFSIDNYVSIELDPFDFSMKDLRTGIPLTRCNSIGDLYPL 195
           F+L  VL AP++++NL+S R+F+ DN  SIE D F FS+KD +T   + RCNS G+LY L
Sbjct: 404 FDLRHVLVAPSLVRNLLSIRQFTRDNKCSIEFDEFGFSIKDPQTRRVILRCNSHGELYTL 463

Query: 196 ---SLNSAAKVNYPTSLTAVSPSTWHNRSG 276
              + + AA  N  TS T      WH R G
Sbjct: 464 PAAAPSIAAHYNLATSST-----LWHRRLG 488


>gb|EMS54188.1| Putative late blight resistance protein-like protein R1B-14
           [Triticum urartu]
          Length = 770

 Score = 83.6 bits (205), Expect(2) = 1e-21
 Identities = 44/109 (40%), Positives = 69/109 (63%), Gaps = 2/109 (1%)
 Frame = +3

Query: 351 CYSCPLGKYVRLLFNSSHSITYSPFDIIHADLWTSPIPSILGHKYYLILLD*F--FSLYL 524
           C++C +GK+V L F +S + +  PF+++H DLWTSP PS+ G KYYL+LL+ +  F    
Sbjct: 591 CHACQMGKHVHLPFGTSSTRSSFPFELLHCDLWTSPTPSVFGFKYYLVLLNDYSHFICTF 650

Query: 525 GVSSQT*ITSVLYISLFKTYVNT*F*KSIKSVQCDNRCEFGNSNFHQFF 671
            + +++ +   L+++ F+ YV T F   I+ +QCDN  EF NS    FF
Sbjct: 651 PIRAKSDV-HALFVN-FQRYVFTHFSLPIRFLQCDNGREFDNSRNRAFF 697



 Score = 46.2 bits (108), Expect(2) = 1e-21
 Identities = 26/60 (43%), Positives = 37/60 (61%)
 Frame = +1

Query: 97  VSIELDPFDFSMKDLRTGIPLTRCNSIGDLYPLSLNSAAKVNYPTSLTAVSPSTWHNRSG 276
           VSIE DPF  S+KDL+T + + R NS GDLY  ++++A+  +    L +V    WH R G
Sbjct: 508 VSIEFDPFGLSVKDLQTKMEIARFNSSGDLY--TVDNASSSSSHAMLASV--GLWHRRLG 563


>ref|XP_004966848.1| PREDICTED: uncharacterized protein LOC101777861 [Setaria italica]
          Length = 2179

 Score = 94.0 bits (232), Expect = 4e-17
 Identities = 62/167 (37%), Positives = 92/167 (55%), Gaps = 4/167 (2%)
 Frame = +3

Query: 183  PLSTLTQFCCQSQLSHISHCRLSINVAQ*VGHPRLKVFNSFHNFNFINYNSESS*DCYSC 362
            P ST       +  + + H RL       +GH  L    S +  +   +N++    C++C
Sbjct: 555  PSSTTAALTTATSSTSLWHRRLGH-----LGHAALFQLISSNVISCNKHNTDHV--CHAC 607

Query: 363  PLGKYVRLLFNSSHSITYSPFDIIHADLWTSPIPSILGHKYYLILLD----*FFSLYLGV 530
             LG++VRL F+ S+S    PFD+IH DLWTSP+ S+ G+KYYL++LD      ++  L +
Sbjct: 608  QLGRHVRLPFSVSNSRAIHPFDLIHCDLWTSPVVSVSGYKYYLVILDDCTHYTWTFPLRL 667

Query: 531  SSQT*ITSVLYISLFKTYVNT*F*KSIKSVQCDNRCEFGNSNFHQFF 671
             S+T       IS F +YV T F  +IK+VQCDN  EF +S+   FF
Sbjct: 668  KSET----FGVISNFFSYVRTQFDSTIKAVQCDNGREFDHSSARTFF 710



 Score = 90.9 bits (224), Expect = 3e-16
 Identities = 65/197 (32%), Positives = 97/197 (49%), Gaps = 9/197 (4%)
 Frame = +1

Query: 1    TTNHPFNLNKVLYAPNIIKNLISYRKFSIDNYVSIELDPFDFSMKDLRTGIPLTRCNSIG 180
            TT  P  L+ VL +PNIIKNLIS R+F+IDN  SIE DPF  S+KDL+T   + RCNS G
Sbjct: 487  TTRRPLVLSNVLVSPNIIKNLISVRRFTIDNNCSIEFDPFGLSVKDLQTRSVIARCNSTG 546

Query: 181  DLYPLSLNSAAKVNYPTSLTAVSPSTWHNRSGTQD*KFXXXXXXXXXXXXXXXXXXXXXH 360
            DLYP     ++     T+ T+ S S WH R G                           H
Sbjct: 547  DLYPFFPAPSSTTAALTTATS-STSLWHRRLGHLG---HAALFQLISSNVISCNKHNTDH 602

Query: 361  VP*ANMLDCYL-IHLTVSHILPLILYMRIYGRLLFLAFWVTNIIS-----FY*I---NFS 513
            V  A  L  ++ +  +VS+   +  +      L+    W + ++S     +Y +   + +
Sbjct: 603  VCHACQLGRHVRLPFSVSNSRAIHPF-----DLIHCDLWTSPVVSVSGYKYYLVILDDCT 657

Query: 514  HFIWVYPLKLKSQVYSI 564
            H+ W +PL+LKS+ + +
Sbjct: 658  HYTWTFPLRLKSETFGV 674


>emb|CAN78447.1| hypothetical protein VITISV_026810 [Vitis vinifera]
          Length = 1171

 Score = 68.6 bits (166), Expect(2) = 7e-17
 Identities = 44/137 (32%), Positives = 70/137 (51%), Gaps = 4/137 (2%)
 Frame = +3

Query: 270 VGHPRLKVFNSFHNFNFINYNSESS*--DCYSCPLGKYVRLLFNSSHSITYSPFDIIHAD 443
           +GHP   +FNS  + N ++    S+    C +C LGK  +L F  S   +  P  +IH+D
Sbjct: 464 LGHPSSVIFNSLFHSNKLSVKGSSTKLEFCSACQLGKAKQLPFPESSRQSSVPLALIHSD 523

Query: 444 LWTSPIPSILGHKYYLILLD*F--FSLYLGVSSQT*ITSVLYISLFKTYVNT*F*KSIKS 617
           +W SP+ S  G  YY++ +D +  +S    +  ++ + +      FKT     F  SIK 
Sbjct: 524 VWVSPVQSTGGCSYYVLFIDDYSRYSWLYPLHRKSDVFATFV--KFKTIAEKLFSTSIKQ 581

Query: 618 VQCDNRCEFGNSNFHQF 668
           +Q DN  EF ++ F QF
Sbjct: 582 IQTDNGGEFTSNQFKQF 598



 Score = 45.1 bits (105), Expect(2) = 7e-17
 Identities = 33/95 (34%), Positives = 45/95 (47%), Gaps = 8/95 (8%)
 Frame = +1

Query: 16  FNLNKVLYAPNIIKNLISYRKFSIDNYVSIELDPFDFSMKDLRTGIPLTRCNSIGDLYPL 195
           F+LNK+L+ P    NLIS  +F +DN     L    F +K+  TG  L +      LYPL
Sbjct: 375 FHLNKILHCPQAATNLISINQFCLDNNCYFILTANGFVVKENLTGRILLQGVVENGLYPL 434

Query: 196 SLNSAAKVNYPTSLTAVSPS--------TWHNRSG 276
               A    +  SLT +S +        TWH+R G
Sbjct: 435 ----AGCKTFHKSLTCLSTTIGVRANADTWHSRLG 465


>gb|EEC82022.1| hypothetical protein OsI_25984 [Oryza sativa Indica Group]
          Length = 964

 Score = 90.5 bits (223), Expect = 4e-16
 Identities = 49/111 (44%), Positives = 70/111 (63%), Gaps = 4/111 (3%)
 Frame = +3

Query: 351  CYSCPLGKYVRLLFNSSHSITYSPFDIIHADLWTSPIPSILGHKYYLILLD----*FFSL 518
            C++C LG++ RL FN+S +   S FD+IH DLWTSP+ S+ G+KYYL++LD      ++ 
Sbjct: 728  CHACQLGRHCRLPFNTSFTRATSNFDLIHCDLWTSPVSSVSGYKYYLVILDDCSHFVWTF 787

Query: 519  YLGVSSQT*ITSVLYISLFKTYVNT*F*KSIKSVQCDNRCEFGNSNFHQFF 671
             L + S T  T    ++ F  YV T F K+IKS+QCDN  +F N+    FF
Sbjct: 788  PLRLKSDTFRT----LTNFFAYVKTQFSKTIKSIQCDNGGKFDNTAARTFF 834



 Score = 62.8 bits (151), Expect = 1e-07
 Identities = 59/211 (27%), Positives = 92/211 (43%), Gaps = 23/211 (10%)
 Frame = +1

Query: 16   FNLNKVLYAPNIIKNLISYRKFSIDNYVSIELDPFDFSMKDLRTGIPLTRCNSIGDLYPL 195
            F LN VL +P IIKNLI  R+F+ DN VS+E D     +KD  +   +  CNS GDLY  
Sbjct: 621  FVLNNVLVSPEIIKNLIVVRRFARDNDVSVEFDKDGLDVKDFHSRNMIVWCNSFGDLY-- 678

Query: 196  SLNSAAKVNYPTSLTAVSPSTWHNRSGTQD*KFXXXXXXXXXXXXXXXXXXXXXHVP*AN 375
             L    +++Y  +    S   WH+R G                            +  ++
Sbjct: 679  -LVRPTELHYALA-ARESSVLWHHRLG-------------------HLGSEALTRLARSS 717

Query: 376  MLDCYLIHLTVSHILPLILYMRI-----YGR------LLFLAFWVTNIIS-----FY*I- 504
            ++  Y   L+V H   L  + R+     + R      L+    W + + S     +Y + 
Sbjct: 718  VIPPYR-ELSVCHACQLGRHCRLPFNTSFTRATSNFDLIHCDLWTSPVSSVSGYKYYLVI 776

Query: 505  --NFSHFIWVYPLKLKSQVY----SIFRYLK 579
              + SHF+W +PL+LKS  +    + F Y+K
Sbjct: 777  LDDCSHFVWTFPLRLKSDTFRTLTNFFAYVK 807


>gb|ABW81031.1| LTRGag-pol-polymerase 3 [Arabidopsis lyrata subsp. lyrata]
          Length = 1296

 Score = 89.0 bits (219), Expect = 1e-15
 Identities = 45/105 (42%), Positives = 63/105 (60%)
 Frame = +3

Query: 351 CYSCPLGKYVRLLFNSSHSITYSPFDIIHADLWTSPIPSILGHKYYLILLD*FFSLYLGV 530
           C +C LGK+ RL F +S++I  S F+I+H+D+WTSP+PSI G KYYLI LD +       
Sbjct: 529 CQACQLGKHTRLPFFNSNTIASSLFEIVHSDIWTSPVPSISGLKYYLIFLDQYSHFVWAY 588

Query: 531 SSQT*ITSVLYISLFKTYVNT*F*KSIKSVQCDNRCEFGNSNFHQ 665
                  +++    F TYV T F +  KS+QCDN  E+ N  F +
Sbjct: 589 PLHRKSDTLVKYINFSTYVQTQFNRQFKSLQCDNDREYDNRAFKE 633



 Score = 81.6 bits (200), Expect = 2e-13
 Identities = 65/225 (28%), Positives = 93/225 (41%), Gaps = 24/225 (10%)
 Frame = +1

Query: 16   FNLNKVLYAPNIIKNLISYRKFSIDNYVSIELDPFDFSMKDLRTGIPLTRCNSIGDLYPL 195
            F+L  VL  P I+KNL+S RKF  DN+ +IE DPF FS+KDL+T   L RC+S G LY +
Sbjct: 416  FSLRNVLVCPAIVKNLVSVRKFVTDNWCTIEFDPFGFSVKDLKTRNKLLRCDSSGPLYSV 475

Query: 196  SLNSAAKVNYPTSLTAVSPSTWHNRSGTQD*KFXXXXXXXXXXXXXXXXXXXXXHVP*AN 375
            + +S    ++  + T      WH R G                            VP  +
Sbjct: 476  TPSSYPSSHHALAATTSDSFIWHRRLG-----------HPSSTLLSHLLSSLSISVPKTD 524

Query: 376  MLD-CYLIHLTVSHILPLILYMRIYGRLLFLA---FWVTNI-----ISFY*I---NFSHF 519
            +   C    L     LP      I   L  +     W + +     + +Y I    +SHF
Sbjct: 525  LTSLCQACQLGKHTRLPFFNSNTIASSLFEIVHSDIWTSPVPSISGLKYYLIFLDQYSHF 584

Query: 520  IWVYPLKLKSQV------YSIF------RYLKHMSTPNSKKASNR 618
            +W YPL  KS        +S +      R  K +   N ++  NR
Sbjct: 585  VWAYPLHRKSDTLVKYINFSTYVQTQFNRQFKSLQCDNDREYDNR 629


>gb|AEJ07955.1| putative polyprotein [Sorghum propinquum]
          Length = 826

 Score = 87.0 bits (214), Expect = 5e-15
 Identities = 50/111 (45%), Positives = 68/111 (61%), Gaps = 4/111 (3%)
 Frame = +3

Query: 351 CYSCPLGKYVRLLFNSSHSITYSPFDIIHADLWTSPIPSILGHKYYLILLD----*FFSL 518
           C++C LG++ RL F++S S   + FD+IH DLW SPI S+ G+KYYLI+LD      ++ 
Sbjct: 627 CHACQLGRHTRLPFSTSTSRATNNFDLIHCDLWASPIVSVSGYKYYLIILDDRSHYIWTF 686

Query: 519 YLGVSSQT*ITSVLYISLFKTYVNT*F*KSIKSVQCDNRCEFGNSNFHQFF 671
            L + S T  T    ++ F  +V T F  +IKSVQCDN  EF NS    FF
Sbjct: 687 PLRLKSDTFST----VANFFAHVRTQFGTTIKSVQCDNGREFDNSMSRTFF 733



 Score = 86.7 bits (213), Expect = 6e-15
 Identities = 66/199 (33%), Positives = 89/199 (44%), Gaps = 9/199 (4%)
 Frame = +1

Query: 22   LNKVLYAPNIIKNLISYRKFSIDNYVSIELDPFDFSMKDLRTGIPLTRCNSIGDLYPLSL 201
            LNKVL +P+IIKNLIS R+F+ DN   IE DPF  S+KDL+T   + RCNS GDLYP   
Sbjct: 520  LNKVLVSPHIIKNLISIRRFTTDNNCFIEFDPFGLSVKDLQTRNVIARCNSSGDLYPFFP 579

Query: 202  NSAAKVNYPTSLTAVSPSTWHNRSGTQD*KFXXXXXXXXXXXXXXXXXXXXXHVP*ANML 381
             + +     T+L A   S WH R G    +                      H       
Sbjct: 580  PATS----ATALLAAPASLWHRRLGHLGREALSQLVSSSAISCNKDDDYHLCHA------ 629

Query: 382  DCYLIHLTVSHILPLILYMRIYGRLLFLAFWVTNIIS-----FY*I---NFSHFIWVYPL 537
             C L   T                L+    W + I+S     +Y I   + SH+IW +PL
Sbjct: 630  -CQLGRHTRLPFSTSTSRATNNFDLIHCDLWASPIVSVSGYKYYLIILDDRSHYIWTFPL 688

Query: 538  KLKSQVYS-IFRYLKHMST 591
            +LKS  +S +  +  H+ T
Sbjct: 689  RLKSDTFSTVANFFAHVRT 707


>ref|XP_004986808.1| PREDICTED: uncharacterized protein LOC101773259 [Setaria italica]
          Length = 1950

 Score = 85.1 bits (209), Expect = 2e-14
 Identities = 50/132 (37%), Positives = 71/132 (53%), Gaps = 4/132 (3%)
 Frame = +3

Query: 264  Q*VGHPRLKVFNSFHNFNFINYNSESS*DCYSCPLGKYVRLLFNSSHSITYSPFDIIHAD 443
            Q +GHP        +  + ++ N      C+SC LGK+ RL F+SSHSIT++PF+++H D
Sbjct: 1130 QRLGHPAPAALERLNKIHVVSCNKVDRSLCHSCQLGKHTRLPFSSSHSITHAPFELVHCD 1189

Query: 444  LWTSPIPSILGHKYYLILLD*F----FSLYLGVSSQT*ITSVLYISLFKTYVNT*F*KSI 611
            +WTSPI S+ G  YYL+ LD +    +   LG  S+     V   +L KT     F   +
Sbjct: 1190 VWTSPINSLSGFSYYLVCLDDYSHYCWVFPLGKKSEVHQHIVELAALAKTQ----FSLPL 1245

Query: 612  KSVQCDNRCEFG 647
            K VQ DN    G
Sbjct: 1246 KCVQADNASHKG 1257



 Score = 84.0 bits (206), Expect = 4e-14
 Identities = 65/200 (32%), Positives = 92/200 (46%), Gaps = 14/200 (7%)
 Frame = +1

Query: 1    TTNHPFNLNKVLYAPNIIKNLISYRKFSIDNYVSIELDPFDFSMKDLRTGIPLTRCNSIG 180
            TTN  F LN +L AP+I++NL+S R+F+ DN  S E D   FS+KDLRTG  + RCNS G
Sbjct: 1046 TTN--FALNNILVAPSIVRNLLSVRQFTRDNSCSFEFDAHGFSVKDLRTGRVILRCNSDG 1103

Query: 181  DLYPLSLNSAAKVNYPTSLTAVSPSTWHNRSGTQD*KFXXXXXXXXXXXXXXXXXXXXXH 360
            DLY +   +    ++  +  A S + WH R G                           H
Sbjct: 1104 DLYTMPAGTPVAPSH--AFLAASSTLWHQRLG--------------HPAPAALERLNKIH 1147

Query: 361  VP*ANMLD---CYLIHLTVSHILPLILYMRIYG---RLLFLAFWVTNI-----ISFY*I- 504
            V   N +D   C+   L     LP      I      L+    W + I      S+Y + 
Sbjct: 1148 VVSCNKVDRSLCHSCQLGKHTRLPFSSSHSITHAPFELVHCDVWTSPINSLSGFSYYLVC 1207

Query: 505  --NFSHFIWVYPLKLKSQVY 558
              ++SH+ WV+PL  KS+V+
Sbjct: 1208 LDDYSHYCWVFPLGKKSEVH 1227


>gb|AAT93988.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1480

 Score = 84.7 bits (208), Expect = 2e-14
 Identities = 46/134 (34%), Positives = 69/134 (51%)
 Frame = +3

Query: 270 VGHPRLKVFNSFHNFNFINYNSESS*DCYSCPLGKYVRLLFNSSHSITYSPFDIIHADLW 449
           +GHP      + H    ++    ++  C++C LGK+ RL F+ S S T SPF+++H D+W
Sbjct: 494 LGHPSPAAVQTLHKLAILSCTRSNNKLCHACHLGKHTRLSFSKSSSSTSSPFELVHCDVW 553

Query: 450 TSPIPSILGHKYYLILLD*FFSLYLGVSSQT*ITSVLYISLFKTYVNT*F*KSIKSVQCD 629
           TSP+ S+ G KYYL++LD F         +       ++  F  YV T F   I+  Q D
Sbjct: 554 TSPVLSLSGFKYYLVVLDDFTHFCWTFPLRHKSDVHQHLLEFVAYVKTQFSLPIRCFQAD 613

Query: 630 NRCEFGNSNFHQFF 671
           N  +F N     FF
Sbjct: 614 NGTKFVNHATTSFF 627



 Score = 70.5 bits (171), Expect = 5e-10
 Identities = 57/204 (27%), Positives = 88/204 (43%), Gaps = 12/204 (5%)
 Frame = +1

Query: 16  FNLNKVLYAPNIIKNLISYRKFSIDNYVSIELDPFDFSMKDLRTGIPLTRCNSIGDLYPL 195
           F L  +L AP++++NL+  R+F+ DN  S E D F FS+KDL T   + RCNS GDLY L
Sbjct: 411 FALKNILVAPSLVRNLLFVRQFTRDNKCSFEFDEFGFSVKDLPTRRVILRCNSRGDLYTL 470

Query: 196 SLNSAAKVNYPTSLTAVSPSTWHNRSGTQD*KFXXXXXXXXXXXXXXXXXXXXXHVP*AN 375
                A   +  S  A S + WH+R G                               +N
Sbjct: 471 PTTVPAITAH--SFLAKSSTLWHHRLG-----------HPSPAAVQTLHKLAILSCTRSN 517

Query: 376 MLDCYLIHLTVSHILPLILYMRIYG---RLLFLAFWVTNIIS-----FY*I---NFSHFI 522
              C+  HL     L              L+    W + ++S     +Y +   +F+HF 
Sbjct: 518 NKLCHACHLGKHTRLSFSKSSSSTSSPFELVHCDVWTSPVLSLSGFKYYLVVLDDFTHFC 577

Query: 523 WVYPLKLKSQVYS-IFRYLKHMST 591
           W +PL+ KS V+  +  ++ ++ T
Sbjct: 578 WTFPLRHKSDVHQHLLEFVAYVKT 601


>gb|ABA93844.2| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group]
          Length = 1099

 Score = 84.3 bits (207), Expect = 3e-14
 Identities = 45/111 (40%), Positives = 69/111 (62%), Gaps = 4/111 (3%)
 Frame = +3

Query: 351 CYSCPLGKYVRLLFNSSHSITYSPFDIIHADLWTSPIPSILGHKYYLILLD*F----FSL 518
           C++  LG++VRL F SS +   + F+++H DLWTSP+PS+ G KYYL++LD +    ++ 
Sbjct: 529 CHAYQLGRHVRLPFTSSFTRASAKFELVHCDLWTSPVPSVYGFKYYLVILDDYSHYVWTF 588

Query: 519 YLGVSSQT*ITSVLYISLFKTYVNT*F*KSIKSVQCDNRCEFGNSNFHQFF 671
            L + S+T  T    IS F  +V T F  +I+++QCDN  +F N     FF
Sbjct: 589 PLRLKSETFDT----ISHFFAFVKTQFSTTIRNIQCDNGRKFDNLTARTFF 635


>gb|AAM74347.1|AC115686_14 Putative retroelement [Oryza sativa Japonica Group]
          Length = 1250

 Score = 81.6 bits (200), Expect = 2e-13
 Identities = 46/126 (36%), Positives = 62/126 (49%)
 Frame = +3

Query: 270 VGHPRLKVFNSFHNFNFINYNSESS*DCYSCPLGKYVRLLFNSSHSITYSPFDIIHADLW 449
           +GHP      + H    +         C++C LGK+ RL F+ S S T SPF+++H D+W
Sbjct: 495 LGHPSSAAIQTLHKLAILPCTKIDHSLCHACKLGKHTRLPFSRSQSSTSSPFELVHCDVW 554

Query: 450 TSPIPSILGHKYYLILLD*FFSLYLGVSSQT*ITSVLYISLFKTYVNT*F*KSIKSVQCD 629
           TSP+ S  G KYYL++LD F         +       +I  F  YV T F  SIK  Q D
Sbjct: 555 TSPVLSTSGFKYYLVVLDDFSHFCWTFPLRHKSDVHQHIVEFVAYVTTQFGSSIKCFQAD 614

Query: 630 NRCEFG 647
           N    G
Sbjct: 615 NASHKG 620



 Score = 80.9 bits (198), Expect = 3e-13
 Identities = 64/212 (30%), Positives = 99/212 (46%), Gaps = 20/212 (9%)
 Frame = +1

Query: 16  FNLNKVLYAPNIIKNLISYRKFSIDNYVSIELDPFDFSMKDLRTGIPLTRCNSIGDLYPL 195
           F+L  +L AP++++NL+S R+F+ DN  SIE D F FS+K LRT   + RCNS GDLY L
Sbjct: 412 FDLKNILVAPSLVRNLLSIRQFTRDNNCSIEFDEFGFSVKGLRTRRVILRCNSRGDLYTL 471

Query: 196 SLNSAAKVNYPTSLTAVSPSTWHNRSGTQD*KFXXXXXXXXXXXXXXXXXXXXXHVP*AN 375
            +  AA      S  A S + WH R G                            +    
Sbjct: 472 PI--AAPAIAAHSFLAQSSTLWHRRLG-------------------HPSSAAIQTLHKLA 510

Query: 376 MLDCYLIHLTVSHILPLILYMRI-YGR----------LLFLAFWVTNIIS-----FY*I- 504
           +L C  I  ++ H   L  + R+ + R          L+    W + ++S     +Y + 
Sbjct: 511 ILPCTKIDHSLCHACKLGKHTRLPFSRSQSSTSSPFELVHCDVWTSPVLSTSGFKYYLVV 570

Query: 505 --NFSHFIWVYPLKLKSQVYS-IFRYLKHMST 591
             +FSHF W +PL+ KS V+  I  ++ +++T
Sbjct: 571 LDDFSHFCWTFPLRHKSDVHQHIVEFVAYVTT 602


>gb|AAM08751.1|AC025098_18 Putative copia-type polyprotein [Oryza sativa Japonica Group]
          Length = 1803

 Score = 77.8 bits (190), Expect = 3e-12
 Identities = 63/204 (30%), Positives = 95/204 (46%), Gaps = 14/204 (6%)
 Frame = +1

Query: 1   TTNHPFNLNKVLYAPNIIKNLISYRKFSIDNYVSIELDPFDFSMKDLRTGIPLTRCNSIG 180
           T++   +L+ VL +P +IKNLIS +K + DN VSIE DP  FS+KDL+T +   RC+S G
Sbjct: 417 TSSTDLHLHNVLVSPPLIKNLISVKKLTRDNNVSIEFDPTGFSIKDLQTQVVKLRCDSPG 476

Query: 181 DLYPLSLNSAAKVNYPTSLTAV-SPST--WHNRSGTQD*KFXXXXXXXXXXXXXXXXXXX 351
           DLYPL L S      P +L+A  SPS   WH R G                         
Sbjct: 477 DLYPLRLPS------PHALSATSSPSVEHWHLRLGHP----GSASLSKVLGSFDFQCNKS 526

Query: 352 XXHVP*ANMLDCYLIHLTVSHILP--------LILYMRIYGRLLFLAFWVTNIISFY*I- 504
             H        C   H+  +  LP        L  +  ++  +     +  +   +Y + 
Sbjct: 527 APH-------HCSACHVGTNVRLPFHSSSSQTLFPFQLVHTDVWTSPIYSNSGYKYYVVF 579

Query: 505 --NFSHFIWVYPLKLKSQVYSIFR 570
             +F+H+IW +P++ KS+V+   R
Sbjct: 580 LDDFTHYIWTFPVRNKSEVFHTVR 603



 Score = 67.4 bits (163), Expect = 4e-09
 Identities = 46/130 (35%), Positives = 67/130 (51%), Gaps = 5/130 (3%)
 Frame = +3

Query: 270 VGHPRL----KVFNSFHNFNFINYNSESS*DCYSCPLGKYVRLLFNSSHSITYSPFDIIH 437
           +GHP      KV  SF        N  +   C +C +G  VRL F+SS S T  PF ++H
Sbjct: 504 LGHPGSASLSKVLGSFD----FQCNKSAPHHCSACHVGTNVRLPFHSSSSQTLFPFQLVH 559

Query: 438 ADLWTSPIPSILGHKYYLILLD*FFSLYLGVSSQT*ITSVLY-ISLFKTYVNT*F*KSIK 614
            D+WTSPI S  G+KYY++ LD  F+ Y+        + V + +  F  Y +T F   + 
Sbjct: 560 TDVWTSPIYSNSGYKYYVVFLD-DFTHYIWTFPVRNKSEVFHTVRSFFAYAHTQFGLPVL 618

Query: 615 SVQCDNRCEF 644
           ++Q DN  E+
Sbjct: 619 ALQTDNGKEY 628


>dbj|BAA78426.1| polyprotein [Arabidopsis thaliana]
          Length = 1475

 Score = 77.8 bits (190), Expect = 3e-12
 Identities = 60/207 (28%), Positives = 93/207 (44%), Gaps = 12/207 (5%)
 Frame = +1

Query: 1   TTNHPFNLNKVLYAPNIIKNLISYRKFSIDNYVSIELDPFDFSMKDLRTGIPLTRCNSIG 180
           T++   +LNKVLY PNI KNLIS  +    N VS+E  P  F +KDL TG+PL +  +  
Sbjct: 378 TSSRSLDLNKVLYVPNINKNLISVYRLCNTNRVSVEFFPASFQVKDLNTGVPLLQGKTKD 437

Query: 181 DLYPLSLNSAAKVN-YPTSLTAVSPSTWHNRSGTQD*KFXXXXXXXXXXXXXXXXXXXXX 357
           +LY   + S+  V+ + +  +  + S+WH+R G                           
Sbjct: 438 ELYEWPIASSQAVSMFASPCSKATHSSWHSRLGHPSLAILNSVISNHSLPVLN------- 490

Query: 358 HVP*ANMLDCYLIHLTVSHILPLILYMRIYGR---LLFLAFWVTNIIS-----FY*I--- 504
             P   +L C    +  SH +P         +    ++   W + I+S     +Y I   
Sbjct: 491 --PSHKLLSCSDCFINKSHKVPFSNSTITSSKPLEYIYSDVWSSPILSIDNYRYYVIFVD 548

Query: 505 NFSHFIWVYPLKLKSQVYSIFRYLKHM 585
           +F+ + W+YPLK KSQV   F   K +
Sbjct: 549 HFTRYTWLYPLKQKSQVKDTFIIFKSL 575


>dbj|BAA78424.1| polyprotein [Arabidopsis thaliana] gi|404433798|dbj|BAM44533.1|
           polyprotein [Arabidopsis thaliana]
          Length = 1330

 Score = 77.8 bits (190), Expect = 3e-12
 Identities = 60/207 (28%), Positives = 93/207 (44%), Gaps = 12/207 (5%)
 Frame = +1

Query: 1   TTNHPFNLNKVLYAPNIIKNLISYRKFSIDNYVSIELDPFDFSMKDLRTGIPLTRCNSIG 180
           T++   +LNKVLY PNI KNLIS  +    N VS+E  P  F +KDL TG+PL +  +  
Sbjct: 233 TSSRSLDLNKVLYVPNIHKNLISVYRLCNTNRVSVEFFPASFQVKDLNTGVPLLQGKTKD 292

Query: 181 DLYPLSLNSAAKVN-YPTSLTAVSPSTWHNRSGTQD*KFXXXXXXXXXXXXXXXXXXXXX 357
           +LY   + S+  V+ + +  +  + S+WH+R G                           
Sbjct: 293 ELYEWPIASSQAVSMFASPCSKATHSSWHSRLGHPSLAILNSVISNHSLPVLN------- 345

Query: 358 HVP*ANMLDCYLIHLTVSHILPLILYMRIYGR---LLFLAFWVTNIIS-----FY*I--- 504
             P   +L C    +  SH +P         +    ++   W + I+S     +Y I   
Sbjct: 346 --PSHKLLSCSDCFINKSHKVPFSNSTITSSKPLEYIYSDVWSSPILSIDNYRYYVIFVD 403

Query: 505 NFSHFIWVYPLKLKSQVYSIFRYLKHM 585
           +F+ + W+YPLK KSQV   F   K +
Sbjct: 404 HFTRYTWLYPLKQKSQVKDTFIIFKSL 430


>dbj|BAM42650.1| Polyprotein [Arabidopsis thaliana]
          Length = 1475

 Score = 77.8 bits (190), Expect = 3e-12
 Identities = 60/207 (28%), Positives = 93/207 (44%), Gaps = 12/207 (5%)
 Frame = +1

Query: 1   TTNHPFNLNKVLYAPNIIKNLISYRKFSIDNYVSIELDPFDFSMKDLRTGIPLTRCNSIG 180
           T++   +LNKVLY PNI KNLIS  +    N VS+E  P  F +KDL TG+PL +  +  
Sbjct: 378 TSSRSLDLNKVLYVPNIHKNLISVYRLCNTNRVSVEFFPASFQVKDLNTGVPLLQGKTKD 437

Query: 181 DLYPLSLNSAAKVN-YPTSLTAVSPSTWHNRSGTQD*KFXXXXXXXXXXXXXXXXXXXXX 357
           +LY   + S+  V+ + +  +  + S+WH+R G                           
Sbjct: 438 ELYEWPIASSQAVSMFASPCSKATHSSWHSRLGHPSLAILNSVISNHSLPVLN------- 490

Query: 358 HVP*ANMLDCYLIHLTVSHILPLILYMRIYGR---LLFLAFWVTNIIS-----FY*I--- 504
             P   +L C    +  SH +P         +    ++   W + I+S     +Y I   
Sbjct: 491 --PSHKLLSCSDCFINKSHKVPFSNSTITSSKPLEYIYSDVWSSPILSIDNYRYYVIFVD 548

Query: 505 NFSHFIWVYPLKLKSQVYSIFRYLKHM 585
           +F+ + W+YPLK KSQV   F   K +
Sbjct: 549 HFTRYTWLYPLKQKSQVKDTFIIFKSL 575


>dbj|BAM42649.1| Polyprotein [Arabidopsis thaliana]
          Length = 1475

 Score = 77.8 bits (190), Expect = 3e-12
 Identities = 60/207 (28%), Positives = 93/207 (44%), Gaps = 12/207 (5%)
 Frame = +1

Query: 1   TTNHPFNLNKVLYAPNIIKNLISYRKFSIDNYVSIELDPFDFSMKDLRTGIPLTRCNSIG 180
           T++   +LNKVLY PNI KNLIS  +    N VS+E  P  F +KDL TG+PL +  +  
Sbjct: 378 TSSRSLDLNKVLYVPNINKNLISVYRLCNTNRVSVEFFPASFQVKDLNTGVPLLQGKTKD 437

Query: 181 DLYPLSLNSAAKVN-YPTSLTAVSPSTWHNRSGTQD*KFXXXXXXXXXXXXXXXXXXXXX 357
           +LY   + S+  V+ + +  +  + S+WH+R G                           
Sbjct: 438 ELYEWPIASSQAVSMFASPCSKATHSSWHSRLGHPSLAILNSVISNHSLPVLN------- 490

Query: 358 HVP*ANMLDCYLIHLTVSHILPLILYMRIYGR---LLFLAFWVTNIIS-----FY*I--- 504
             P   +L C    +  SH +P         +    ++   W + I+S     +Y I   
Sbjct: 491 --PSHKLLSCSDCFINKSHKVPFSNSTITSSKPLEYIYSDVWSSPILSIDNYRYYVIFVD 548

Query: 505 NFSHFIWVYPLKLKSQVYSIFRYLKHM 585
           +F+ + W+YPLK KSQV   F   K +
Sbjct: 549 HFTRYTWLYPLKQKSQVKDTFIIFKSL 575


>dbj|BAM42647.1| polyprotein [Arabidopsis thaliana] gi|403406144|dbj|BAM42648.1|
           polyprotein [Arabidopsis thaliana]
          Length = 1475

 Score = 77.8 bits (190), Expect = 3e-12
 Identities = 60/207 (28%), Positives = 93/207 (44%), Gaps = 12/207 (5%)
 Frame = +1

Query: 1   TTNHPFNLNKVLYAPNIIKNLISYRKFSIDNYVSIELDPFDFSMKDLRTGIPLTRCNSIG 180
           T++   +LNKVLY PNI KNLIS  +    N VS+E  P  F +KDL TG+PL +  +  
Sbjct: 378 TSSRSLDLNKVLYVPNIHKNLISVYRLCNTNRVSVEFFPASFQVKDLNTGVPLLQGKTKD 437

Query: 181 DLYPLSLNSAAKVN-YPTSLTAVSPSTWHNRSGTQD*KFXXXXXXXXXXXXXXXXXXXXX 357
           +LY   + S+  V+ + +  +  + S+WH+R G                           
Sbjct: 438 ELYEWPIASSQAVSMFASPCSKATHSSWHSRLGHPSLAILNSVISNHSLPVLN------- 490

Query: 358 HVP*ANMLDCYLIHLTVSHILPLILYMRIYGR---LLFLAFWVTNIIS-----FY*I--- 504
             P   +L C    +  SH +P         +    ++   W + I+S     +Y I   
Sbjct: 491 --PSHKLLSCSDCFINKSHKVPFSNSTITSSKPLEYIYSDVWSSPILSIDNYRYYVIFVD 548

Query: 505 NFSHFIWVYPLKLKSQVYSIFRYLKHM 585
           +F+ + W+YPLK KSQV   F   K +
Sbjct: 549 HFTRYTWLYPLKQKSQVKDTFIIFKSL 575


>dbj|BAM42646.1| polyprotein [Arabidopsis thaliana]
          Length = 1475

 Score = 77.8 bits (190), Expect = 3e-12
 Identities = 60/207 (28%), Positives = 93/207 (44%), Gaps = 12/207 (5%)
 Frame = +1

Query: 1   TTNHPFNLNKVLYAPNIIKNLISYRKFSIDNYVSIELDPFDFSMKDLRTGIPLTRCNSIG 180
           T++   +LNKVLY PNI KNLIS  +    N VS+E  P  F +KDL TG+PL +  +  
Sbjct: 378 TSSRSLDLNKVLYVPNIHKNLISVYRLCNTNRVSVEFFPASFQVKDLNTGVPLLQGKTKD 437

Query: 181 DLYPLSLNSAAKVN-YPTSLTAVSPSTWHNRSGTQD*KFXXXXXXXXXXXXXXXXXXXXX 357
           +LY   + S+  V+ + +  +  + S+WH+R G                           
Sbjct: 438 ELYEWPIASSQAVSMFASPCSKATHSSWHSRLGHPSLAILNSVISNHSLPVLN------- 490

Query: 358 HVP*ANMLDCYLIHLTVSHILPLILYMRIYGR---LLFLAFWVTNIIS-----FY*I--- 504
             P   +L C    +  SH +P         +    ++   W + I+S     +Y I   
Sbjct: 491 --PSHKLLSCSDCFINKSHKVPFSNSTITSSKPLEYIYSDVWSSPILSIDNYRYYVIFVD 548

Query: 505 NFSHFIWVYPLKLKSQVYSIFRYLKHM 585
           +F+ + W+YPLK KSQV   F   K +
Sbjct: 549 HFTRYTWLYPLKQKSQVKDTFIIFKSL 575