BLASTX nr result

ID: Atropa21_contig00036265 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atropa21_contig00036265
         (920 letters)

Database: nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006356601.1| PREDICTED: cleavage stimulation factor subun...   158   3e-36
ref|XP_006356598.1| PREDICTED: cleavage stimulation factor subun...   158   3e-36
ref|XP_004248746.1| PREDICTED: cleavage stimulation factor subun...   153   1e-34
ref|XP_004248745.1| PREDICTED: cleavage stimulation factor subun...   153   1e-34
gb|EOY19418.1| Tetratricopeptide repeat (TPR)-like superfamily p...   100   8e-19
gb|EOY19416.1| Tetratricopeptide repeat-like superfamily protein...   100   8e-19
ref|XP_002303484.1| suppressor of forked family protein [Populus...   100   8e-19
ref|XP_002265193.1| PREDICTED: cleavage stimulation factor subun...    99   2e-18
ref|XP_002519397.1| plant RNA cleavage stimulation factor, putat...    92   3e-16
gb|EOY19419.1| Tetratricopeptide repeat-like superfamily protein...    91   6e-16
gb|EOY19417.1| Tetratricopeptide repeat-like superfamily protein...    91   6e-16
ref|XP_004165274.1| PREDICTED: LOW QUALITY PROTEIN: cleavage sti...    89   2e-15
ref|XP_004144686.1| PREDICTED: cleavage stimulation factor subun...    89   2e-15
gb|EXB59942.1| Cleavage stimulation factor subunit 3 [Morus nota...    84   1e-13
ref|XP_004489637.1| PREDICTED: LOW QUALITY PROTEIN: cleavage sti...    81   5e-13
ref|XP_003618920.1| mRNA 3'-end-processing protein rna14 [Medica...    80   1e-12
gb|ESW23484.1| hypothetical protein PHAVU_004G051000g [Phaseolus...    79   3e-12
gb|EMJ28185.1| hypothetical protein PRUPE_ppa002118mg [Prunus pe...    79   3e-12
ref|XP_006604052.1| PREDICTED: cleavage stimulation factor subun...    74   6e-11
ref|XP_004300057.1| PREDICTED: cleavage stimulation factor subun...    74   1e-10

>ref|XP_006356601.1| PREDICTED: cleavage stimulation factor subunit 3-like isoform X4
           [Solanum tuberosum]
          Length = 601

 Score =  158 bits (399), Expect = 3e-36
 Identities = 79/88 (89%), Positives = 82/88 (93%)
 Frame = +3

Query: 3   CLQSNIPSATGKSGTASLPLQSGPAPSTSDLSDSSKFRSRDRQPGKRKDMDRQEDEVSMT 182
           CLQSNIP+ATGKSGTASLPLQSG APSTSDLSDSSKFR RDRQPGKRKDMDRQED+ S T
Sbjct: 492 CLQSNIPAATGKSGTASLPLQSGAAPSTSDLSDSSKFRPRDRQPGKRKDMDRQEDDESTT 551

Query: 183 AQSQPLPRDVFKIRQLQKTRVGNSSRVT 266
            QSQPLPRD+FKIRQLQK RVGNSSRVT
Sbjct: 552 IQSQPLPRDLFKIRQLQKNRVGNSSRVT 579


>ref|XP_006356598.1| PREDICTED: cleavage stimulation factor subunit 3-like isoform X1
           [Solanum tuberosum] gi|565380421|ref|XP_006356599.1|
           PREDICTED: cleavage stimulation factor subunit 3-like
           isoform X2 [Solanum tuberosum]
           gi|565380423|ref|XP_006356600.1| PREDICTED: cleavage
           stimulation factor subunit 3-like isoform X3 [Solanum
           tuberosum]
          Length = 741

 Score =  158 bits (399), Expect = 3e-36
 Identities = 79/88 (89%), Positives = 82/88 (93%)
 Frame = +3

Query: 3   CLQSNIPSATGKSGTASLPLQSGPAPSTSDLSDSSKFRSRDRQPGKRKDMDRQEDEVSMT 182
           CLQSNIP+ATGKSGTASLPLQSG APSTSDLSDSSKFR RDRQPGKRKDMDRQED+ S T
Sbjct: 632 CLQSNIPAATGKSGTASLPLQSGAAPSTSDLSDSSKFRPRDRQPGKRKDMDRQEDDESTT 691

Query: 183 AQSQPLPRDVFKIRQLQKTRVGNSSRVT 266
            QSQPLPRD+FKIRQLQK RVGNSSRVT
Sbjct: 692 IQSQPLPRDLFKIRQLQKNRVGNSSRVT 719


>ref|XP_004248746.1| PREDICTED: cleavage stimulation factor subunit 3-like isoform 2
           [Solanum lycopersicum]
          Length = 734

 Score =  153 bits (386), Expect = 1e-34
 Identities = 77/88 (87%), Positives = 80/88 (90%)
 Frame = +3

Query: 3   CLQSNIPSATGKSGTASLPLQSGPAPSTSDLSDSSKFRSRDRQPGKRKDMDRQEDEVSMT 182
           CLQSNIP+ATGKSGTASLPL SG APSTSDLSDSSKFR RDRQPGKRKDMDR ED+ S T
Sbjct: 625 CLQSNIPAATGKSGTASLPLLSGAAPSTSDLSDSSKFRPRDRQPGKRKDMDRPEDDESTT 684

Query: 183 AQSQPLPRDVFKIRQLQKTRVGNSSRVT 266
            QSQPLPRD+FKIRQLQK RVGNSSRVT
Sbjct: 685 MQSQPLPRDLFKIRQLQKNRVGNSSRVT 712


>ref|XP_004248745.1| PREDICTED: cleavage stimulation factor subunit 3-like isoform 1
           [Solanum lycopersicum]
          Length = 741

 Score =  153 bits (386), Expect = 1e-34
 Identities = 77/88 (87%), Positives = 80/88 (90%)
 Frame = +3

Query: 3   CLQSNIPSATGKSGTASLPLQSGPAPSTSDLSDSSKFRSRDRQPGKRKDMDRQEDEVSMT 182
           CLQSNIP+ATGKSGTASLPL SG APSTSDLSDSSKFR RDRQPGKRKDMDR ED+ S T
Sbjct: 632 CLQSNIPAATGKSGTASLPLLSGAAPSTSDLSDSSKFRPRDRQPGKRKDMDRPEDDESTT 691

Query: 183 AQSQPLPRDVFKIRQLQKTRVGNSSRVT 266
            QSQPLPRD+FKIRQLQK RVGNSSRVT
Sbjct: 692 MQSQPLPRDLFKIRQLQKNRVGNSSRVT 719


>gb|EOY19418.1| Tetratricopeptide repeat (TPR)-like superfamily protein isoform 3
           [Theobroma cacao]
          Length = 755

 Score =  100 bits (249), Expect = 8e-19
 Identities = 57/97 (58%), Positives = 70/97 (72%), Gaps = 11/97 (11%)
 Frame = +3

Query: 3   CLQSNIPSATGKSGTASLPLQ--SGPAPSTSDLSDSSK---------FRSRDRQPGKRKD 149
           CLQS++P+   K  TA LP Q  +GPAPSTSDLS SSK         FR RDR  GKRKD
Sbjct: 641 CLQSDLPTGQTKKLTA-LPSQRTTGPAPSTSDLSGSSKSHPIPSSSSFRPRDRHLGKRKD 699

Query: 150 MDRQEDEVSMTAQSQPLPRDVFKIRQLQKTRVGNSSR 260
           +DRQE++ + T QSQPLPRDVF+IRQ+QK R G++S+
Sbjct: 700 LDRQEEDETTTVQSQPLPRDVFRIRQIQKARGGSASQ 736


>gb|EOY19416.1| Tetratricopeptide repeat-like superfamily protein isoform 1
           [Theobroma cacao]
          Length = 761

 Score =  100 bits (249), Expect = 8e-19
 Identities = 57/97 (58%), Positives = 70/97 (72%), Gaps = 11/97 (11%)
 Frame = +3

Query: 3   CLQSNIPSATGKSGTASLPLQ--SGPAPSTSDLSDSSK---------FRSRDRQPGKRKD 149
           CLQS++P+   K  TA LP Q  +GPAPSTSDLS SSK         FR RDR  GKRKD
Sbjct: 647 CLQSDLPTGQTKKLTA-LPSQRTTGPAPSTSDLSGSSKSHPIPSSSSFRPRDRHLGKRKD 705

Query: 150 MDRQEDEVSMTAQSQPLPRDVFKIRQLQKTRVGNSSR 260
           +DRQE++ + T QSQPLPRDVF+IRQ+QK R G++S+
Sbjct: 706 LDRQEEDETTTVQSQPLPRDVFRIRQIQKARGGSASQ 742


>ref|XP_002303484.1| suppressor of forked family protein [Populus trichocarpa]
           gi|222840916|gb|EEE78463.1| suppressor of forked family
           protein [Populus trichocarpa]
          Length = 769

 Score =  100 bits (249), Expect = 8e-19
 Identities = 55/98 (56%), Positives = 69/98 (70%), Gaps = 10/98 (10%)
 Frame = +3

Query: 3   CLQSNIP-SATGKSGTASLPLQSGPAPSTSDLSDSSK---------FRSRDRQPGKRKDM 152
           CLQS++P   TGKSGT   P+ SGPA  TSDLS SS+         F++RDRQ GKRKD 
Sbjct: 656 CLQSDVPVGKTGKSGTTQTPMLSGPA--TSDLSGSSRSRPVPSGSSFKTRDRQSGKRKDR 713

Query: 153 DRQEDEVSMTAQSQPLPRDVFKIRQLQKTRVGNSSRVT 266
           DRQE++ + T QSQPLPRDVF+IRQ+QK+R   ++  T
Sbjct: 714 DRQEEDETATVQSQPLPRDVFRIRQIQKSRAAATTSQT 751


>ref|XP_002265193.1| PREDICTED: cleavage stimulation factor subunit 3 [Vitis vinifera]
           gi|297736046|emb|CBI24084.3| unnamed protein product
           [Vitis vinifera]
          Length = 769

 Score = 99.4 bits (246), Expect = 2e-18
 Identities = 56/96 (58%), Positives = 68/96 (70%), Gaps = 10/96 (10%)
 Frame = +3

Query: 3   CLQSNIPSATGKSGTASLPLQSGPAPSTSDLSDSSKFRS----------RDRQPGKRKDM 152
           CLQSN+  +TG++G  S  L +GP PSTSDLS SSK             RDRQPGKRKD+
Sbjct: 658 CLQSNV--STGQTGL-STQLAAGPVPSTSDLSGSSKSHPVPSGSSFKPMRDRQPGKRKDL 714

Query: 153 DRQEDEVSMTAQSQPLPRDVFKIRQLQKTRVGNSSR 260
           DRQED+ + TAQS PLPRDVFKIRQ++K R G +S+
Sbjct: 715 DRQEDDETATAQSLPLPRDVFKIRQIRKARGGTTSQ 750


>ref|XP_002519397.1| plant RNA cleavage stimulation factor, putative [Ricinus communis]
           gi|223541464|gb|EEF43014.1| plant RNA cleavage
           stimulation factor, putative [Ricinus communis]
          Length = 767

 Score = 92.0 bits (227), Expect = 3e-16
 Identities = 52/92 (56%), Positives = 66/92 (71%), Gaps = 6/92 (6%)
 Frame = +3

Query: 3   CLQSNIPSAT-GKSGTASLPLQSGPAPSTSDLSDSSKFR-----SRDRQPGKRKDMDRQE 164
           CLQS + +   GK GT S  + + PAP+TSDLS SSK R     SRDRQ GKRKD++RQE
Sbjct: 658 CLQSELTNGQMGKLGT-SPAVPAPPAPATSDLSGSSKSRPVLKPSRDRQSGKRKDIERQE 716

Query: 165 DEVSMTAQSQPLPRDVFKIRQLQKTRVGNSSR 260
           ++ + T QSQPLPRD+F+IR  QK RVG +S+
Sbjct: 717 EDETATVQSQPLPRDIFRIRHSQKARVGTASQ 748


>gb|EOY19419.1| Tetratricopeptide repeat-like superfamily protein isoform 4
           [Theobroma cacao]
          Length = 657

 Score = 90.9 bits (224), Expect = 6e-16
 Identities = 56/105 (53%), Positives = 69/105 (65%), Gaps = 19/105 (18%)
 Frame = +3

Query: 3   CLQSNIPSATGKSGTASLPLQ--SGPAPSTSDLSDSSK---------FRSRDRQPGKRKD 149
           CLQS++P+   K  TA LP Q  +GPAPSTSDLS SSK         FR RDR  GKRKD
Sbjct: 535 CLQSDLPTGQTKKLTA-LPSQRTTGPAPSTSDLSGSSKSHPIPSSSSFRPRDRHLGKRKD 593

Query: 150 MDR--------QEDEVSMTAQSQPLPRDVFKIRQLQKTRVGNSSR 260
           +D         QE++ + T QSQPLPRDVF+IRQ+QK R G++S+
Sbjct: 594 LDSKFPAVFMGQEEDETTTVQSQPLPRDVFRIRQIQKARGGSASQ 638


>gb|EOY19417.1| Tetratricopeptide repeat-like superfamily protein isoform 2
           [Theobroma cacao]
          Length = 717

 Score = 90.9 bits (224), Expect = 6e-16
 Identities = 56/105 (53%), Positives = 69/105 (65%), Gaps = 19/105 (18%)
 Frame = +3

Query: 3   CLQSNIPSATGKSGTASLPLQ--SGPAPSTSDLSDSSK---------FRSRDRQPGKRKD 149
           CLQS++P+   K  TA LP Q  +GPAPSTSDLS SSK         FR RDR  GKRKD
Sbjct: 595 CLQSDLPTGQTKKLTA-LPSQRTTGPAPSTSDLSGSSKSHPIPSSSSFRPRDRHLGKRKD 653

Query: 150 MDR--------QEDEVSMTAQSQPLPRDVFKIRQLQKTRVGNSSR 260
           +D         QE++ + T QSQPLPRDVF+IRQ+QK R G++S+
Sbjct: 654 LDSKFPAVFMGQEEDETTTVQSQPLPRDVFRIRQIQKARGGSASQ 698


>ref|XP_004165274.1| PREDICTED: LOW QUALITY PROTEIN: cleavage stimulation factor subunit
           3-like [Cucumis sativus]
          Length = 460

 Score = 89.4 bits (220), Expect = 2e-15
 Identities = 48/96 (50%), Positives = 61/96 (63%), Gaps = 10/96 (10%)
 Frame = +3

Query: 3   CLQSNIPSAT-GKSGTASLPLQSGPAPSTSDLSDSSKFRS---------RDRQPGKRKDM 152
           CL+S++P+    KSG     +  GP P+TSDLS SSK  +         RD+Q GKRKD 
Sbjct: 346 CLESDLPTVPLVKSGATPAQVSGGPVPTTSDLSGSSKSHAFSNSSLKHTRDKQSGKRKDY 405

Query: 153 DRQEDEVSMTAQSQPLPRDVFKIRQLQKTRVGNSSR 260
           DRQED  S T QSQP+P+D F+IRQ+QK R   SS+
Sbjct: 406 DRQEDNESTTVQSQPMPKDXFRIRQIQKARGATSSQ 441


>ref|XP_004144686.1| PREDICTED: cleavage stimulation factor subunit 3-like [Cucumis
            sativus]
          Length = 871

 Score = 89.4 bits (220), Expect = 2e-15
 Identities = 48/96 (50%), Positives = 61/96 (63%), Gaps = 10/96 (10%)
 Frame = +3

Query: 3    CLQSNIPSAT-GKSGTASLPLQSGPAPSTSDLSDSSKFRS---------RDRQPGKRKDM 152
            CL+S++P+    KSG     +  GP P+TSDLS SSK  +         RD+Q GKRKD 
Sbjct: 757  CLESDLPTVPLVKSGATPAQVSGGPVPTTSDLSGSSKSHAFSNSSLKHTRDKQSGKRKDY 816

Query: 153  DRQEDEVSMTAQSQPLPRDVFKIRQLQKTRVGNSSR 260
            DRQED  S T QSQP+P+D F+IRQ+QK R   SS+
Sbjct: 817  DRQEDNESTTVQSQPMPKDFFRIRQIQKARGATSSQ 852


>gb|EXB59942.1| Cleavage stimulation factor subunit 3 [Morus notabilis]
          Length = 782

 Score = 83.6 bits (205), Expect = 1e-13
 Identities = 49/91 (53%), Positives = 62/91 (68%), Gaps = 11/91 (12%)
 Frame = +3

Query: 3   CLQSNIPSATG---KSGTASLPLQSGPAPSTSDLSDSSK------FRSRDRQPGKRKDMD 155
           CLQS++P+A     KSGTA++ L+SG AP+TSDLS S+K        S     GKRKD+D
Sbjct: 668 CLQSDLPAAPAGNVKSGTATMQLRSGAAPTTSDLSGSTKPHPVPSASSFKPNRGKRKDVD 727

Query: 156 RQED--EVSMTAQSQPLPRDVFKIRQLQKTR 242
           RQ+D  + + T QSQPLPRD F+IRQ QK R
Sbjct: 728 RQDDYDDDTRTVQSQPLPRDAFRIRQFQKAR 758


>ref|XP_004489637.1| PREDICTED: LOW QUALITY PROTEIN: cleavage stimulation factor subunit
           3-like [Cicer arietinum]
          Length = 755

 Score = 81.3 bits (199), Expect = 5e-13
 Identities = 47/98 (47%), Positives = 61/98 (62%), Gaps = 12/98 (12%)
 Frame = +3

Query: 3   CLQSNIPSATGKSGTASLPLQSGPAPSTSDLSDSSKFRSRD------------RQPGKRK 146
           CLQS++P   GK+G  S       AP+TS+LS SSK  S              +Q GKRK
Sbjct: 640 CLQSDLPIG-GKTGIPSQLPVGAAAPATSELSGSSKSHSHPVQTGLSHKPTNRQQYGKRK 698

Query: 147 DMDRQEDEVSMTAQSQPLPRDVFKIRQLQKTRVGNSSR 260
           ++DRQED+ + T QSQPLPRD F+IRQ QK R G++S+
Sbjct: 699 ELDRQEDDDTTTVQSQPLPRDAFRIRQYQKARAGSTSQ 736


>ref|XP_003618920.1| mRNA 3'-end-processing protein rna14 [Medicago truncatula]
           gi|355493935|gb|AES75138.1| mRNA 3'-end-processing
           protein rna14 [Medicago truncatula]
          Length = 737

 Score = 79.7 bits (195), Expect = 1e-12
 Identities = 45/98 (45%), Positives = 64/98 (65%), Gaps = 12/98 (12%)
 Frame = +3

Query: 3   CLQSNIPSATGKSGTASLPLQ--SGPAPSTSDLSDSSK----------FRSRDRQPGKRK 146
           CLQS++P  TG+S    +P Q  +GPAP+TS+LS SSK           +   +Q GKRK
Sbjct: 623 CLQSDLP--TGQSVKVGIPSQLPAGPAPATSELSGSSKSHPVQSGLSHMQPGRKQYGKRK 680

Query: 147 DMDRQEDEVSMTAQSQPLPRDVFKIRQLQKTRVGNSSR 260
            +D QE++ + + QSQPLP+D F+IRQ QK R G++S+
Sbjct: 681 QLDSQEEDDTKSVQSQPLPQDAFRIRQFQKARAGSTSQ 718


>gb|ESW23484.1| hypothetical protein PHAVU_004G051000g [Phaseolus vulgaris]
          Length = 738

 Score = 78.6 bits (192), Expect = 3e-12
 Identities = 48/108 (44%), Positives = 63/108 (58%), Gaps = 22/108 (20%)
 Frame = +3

Query: 3   CLQSNIPSA------------TGKSGTASLPLQSGPAPSTSDLSDSSKFR---------- 116
           CLQS++P+             TGK G  S  L +G AP+TS+LS SSK            
Sbjct: 613 CLQSDLPTGQSAKIGISTQVQTGKGGIPS-QLPAGSAPATSELSGSSKSHPVPSGVSLKP 671

Query: 117 SRDRQPGKRKDMDRQEDEVSMTAQSQPLPRDVFKIRQLQKTRVGNSSR 260
             +RQ GKRK+ +RQED+ + T QSQPLPRD F+IRQ QK R  ++S+
Sbjct: 672 GSNRQYGKRKESERQEDDDTTTVQSQPLPRDAFRIRQYQKARASSASQ 719


>gb|EMJ28185.1| hypothetical protein PRUPE_ppa002118mg [Prunus persica]
          Length = 714

 Score = 78.6 bits (192), Expect = 3e-12
 Identities = 48/87 (55%), Positives = 57/87 (65%), Gaps = 7/87 (8%)
 Frame = +3

Query: 3   CLQSNIPSAT-GKSGTASLPLQSGPAPSTSDLSDSSKFR------SRDRQPGKRKDMDRQ 161
           CLQS++P+   GKSG A + L S PAPSTSDLS SSK        S     GKRK  DRQ
Sbjct: 605 CLQSDVPAPQPGKSGAAPMQLPSIPAPSTSDLSVSSKSHPIPSASSFKPARGKRKHFDRQ 664

Query: 162 EDEVSMTAQSQPLPRDVFKIRQLQKTR 242
           E+E + + QS PLPRD F+IRQ+QK R
Sbjct: 665 EEEEA-SVQSHPLPRDAFRIRQIQKAR 690


>ref|XP_006604052.1| PREDICTED: cleavage stimulation factor subunit 3-like [Glycine max]
          Length = 739

 Score = 74.3 bits (181), Expect = 6e-11
 Identities = 46/110 (41%), Positives = 63/110 (57%), Gaps = 24/110 (21%)
 Frame = +3

Query: 3   CLQSNIPSA------------TGKSGT-ASLPLQSGPAPSTSDLSDSSKFR--------- 116
           CLQS++P+             +GK+G  A LP  S PA + S+LS SSK           
Sbjct: 611 CLQSDLPTGQSVKTGIPTQVQSGKAGIPALLPAGSAPAAAASELSGSSKSHPAPSGGVSL 670

Query: 117 --SRDRQPGKRKDMDRQEDEVSMTAQSQPLPRDVFKIRQLQKTRVGNSSR 260
               +RQ GKRK+ DRQ+++ + T QSQPLPRD F+IRQ QK R  ++S+
Sbjct: 671 KPGSNRQYGKRKEPDRQDEDDTTTVQSQPLPRDAFRIRQYQKARASSASQ 720


>ref|XP_004300057.1| PREDICTED: cleavage stimulation factor subunit 3-like [Fragaria
           vesca subsp. vesca]
          Length = 762

 Score = 73.6 bits (179), Expect = 1e-10
 Identities = 49/94 (52%), Positives = 61/94 (64%), Gaps = 8/94 (8%)
 Frame = +3

Query: 3   CLQSNIPSATG-KSGTASLPLQSGPAPSTSDLSDSSKFR------SRDRQPGKRKDMDRQ 161
           CLQS+IP+    KSGTA +   S PAPSTSDLS SSK        S     GKRK++DR+
Sbjct: 647 CLQSDIPAPQPVKSGTAHVQFPSVPAPSTSDLSVSSKSHPIPSGSSFKPTRGKRKNIDRK 706

Query: 162 EDEVSMTAQSQPLPRDVFKIRQLQK-TRVGNSSR 260
            DE   T QSQPLP D F+IRQ+Q+ +R  ++SR
Sbjct: 707 -DEDETTVQSQPLPTDAFRIRQIQRASRSASASR 739


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