BLASTX nr result
ID: Atropa21_contig00036265
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Atropa21_contig00036265
(920 letters)
Database: nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006356601.1| PREDICTED: cleavage stimulation factor subun... 158 3e-36
ref|XP_006356598.1| PREDICTED: cleavage stimulation factor subun... 158 3e-36
ref|XP_004248746.1| PREDICTED: cleavage stimulation factor subun... 153 1e-34
ref|XP_004248745.1| PREDICTED: cleavage stimulation factor subun... 153 1e-34
gb|EOY19418.1| Tetratricopeptide repeat (TPR)-like superfamily p... 100 8e-19
gb|EOY19416.1| Tetratricopeptide repeat-like superfamily protein... 100 8e-19
ref|XP_002303484.1| suppressor of forked family protein [Populus... 100 8e-19
ref|XP_002265193.1| PREDICTED: cleavage stimulation factor subun... 99 2e-18
ref|XP_002519397.1| plant RNA cleavage stimulation factor, putat... 92 3e-16
gb|EOY19419.1| Tetratricopeptide repeat-like superfamily protein... 91 6e-16
gb|EOY19417.1| Tetratricopeptide repeat-like superfamily protein... 91 6e-16
ref|XP_004165274.1| PREDICTED: LOW QUALITY PROTEIN: cleavage sti... 89 2e-15
ref|XP_004144686.1| PREDICTED: cleavage stimulation factor subun... 89 2e-15
gb|EXB59942.1| Cleavage stimulation factor subunit 3 [Morus nota... 84 1e-13
ref|XP_004489637.1| PREDICTED: LOW QUALITY PROTEIN: cleavage sti... 81 5e-13
ref|XP_003618920.1| mRNA 3'-end-processing protein rna14 [Medica... 80 1e-12
gb|ESW23484.1| hypothetical protein PHAVU_004G051000g [Phaseolus... 79 3e-12
gb|EMJ28185.1| hypothetical protein PRUPE_ppa002118mg [Prunus pe... 79 3e-12
ref|XP_006604052.1| PREDICTED: cleavage stimulation factor subun... 74 6e-11
ref|XP_004300057.1| PREDICTED: cleavage stimulation factor subun... 74 1e-10
>ref|XP_006356601.1| PREDICTED: cleavage stimulation factor subunit 3-like isoform X4
[Solanum tuberosum]
Length = 601
Score = 158 bits (399), Expect = 3e-36
Identities = 79/88 (89%), Positives = 82/88 (93%)
Frame = +3
Query: 3 CLQSNIPSATGKSGTASLPLQSGPAPSTSDLSDSSKFRSRDRQPGKRKDMDRQEDEVSMT 182
CLQSNIP+ATGKSGTASLPLQSG APSTSDLSDSSKFR RDRQPGKRKDMDRQED+ S T
Sbjct: 492 CLQSNIPAATGKSGTASLPLQSGAAPSTSDLSDSSKFRPRDRQPGKRKDMDRQEDDESTT 551
Query: 183 AQSQPLPRDVFKIRQLQKTRVGNSSRVT 266
QSQPLPRD+FKIRQLQK RVGNSSRVT
Sbjct: 552 IQSQPLPRDLFKIRQLQKNRVGNSSRVT 579
>ref|XP_006356598.1| PREDICTED: cleavage stimulation factor subunit 3-like isoform X1
[Solanum tuberosum] gi|565380421|ref|XP_006356599.1|
PREDICTED: cleavage stimulation factor subunit 3-like
isoform X2 [Solanum tuberosum]
gi|565380423|ref|XP_006356600.1| PREDICTED: cleavage
stimulation factor subunit 3-like isoform X3 [Solanum
tuberosum]
Length = 741
Score = 158 bits (399), Expect = 3e-36
Identities = 79/88 (89%), Positives = 82/88 (93%)
Frame = +3
Query: 3 CLQSNIPSATGKSGTASLPLQSGPAPSTSDLSDSSKFRSRDRQPGKRKDMDRQEDEVSMT 182
CLQSNIP+ATGKSGTASLPLQSG APSTSDLSDSSKFR RDRQPGKRKDMDRQED+ S T
Sbjct: 632 CLQSNIPAATGKSGTASLPLQSGAAPSTSDLSDSSKFRPRDRQPGKRKDMDRQEDDESTT 691
Query: 183 AQSQPLPRDVFKIRQLQKTRVGNSSRVT 266
QSQPLPRD+FKIRQLQK RVGNSSRVT
Sbjct: 692 IQSQPLPRDLFKIRQLQKNRVGNSSRVT 719
>ref|XP_004248746.1| PREDICTED: cleavage stimulation factor subunit 3-like isoform 2
[Solanum lycopersicum]
Length = 734
Score = 153 bits (386), Expect = 1e-34
Identities = 77/88 (87%), Positives = 80/88 (90%)
Frame = +3
Query: 3 CLQSNIPSATGKSGTASLPLQSGPAPSTSDLSDSSKFRSRDRQPGKRKDMDRQEDEVSMT 182
CLQSNIP+ATGKSGTASLPL SG APSTSDLSDSSKFR RDRQPGKRKDMDR ED+ S T
Sbjct: 625 CLQSNIPAATGKSGTASLPLLSGAAPSTSDLSDSSKFRPRDRQPGKRKDMDRPEDDESTT 684
Query: 183 AQSQPLPRDVFKIRQLQKTRVGNSSRVT 266
QSQPLPRD+FKIRQLQK RVGNSSRVT
Sbjct: 685 MQSQPLPRDLFKIRQLQKNRVGNSSRVT 712
>ref|XP_004248745.1| PREDICTED: cleavage stimulation factor subunit 3-like isoform 1
[Solanum lycopersicum]
Length = 741
Score = 153 bits (386), Expect = 1e-34
Identities = 77/88 (87%), Positives = 80/88 (90%)
Frame = +3
Query: 3 CLQSNIPSATGKSGTASLPLQSGPAPSTSDLSDSSKFRSRDRQPGKRKDMDRQEDEVSMT 182
CLQSNIP+ATGKSGTASLPL SG APSTSDLSDSSKFR RDRQPGKRKDMDR ED+ S T
Sbjct: 632 CLQSNIPAATGKSGTASLPLLSGAAPSTSDLSDSSKFRPRDRQPGKRKDMDRPEDDESTT 691
Query: 183 AQSQPLPRDVFKIRQLQKTRVGNSSRVT 266
QSQPLPRD+FKIRQLQK RVGNSSRVT
Sbjct: 692 MQSQPLPRDLFKIRQLQKNRVGNSSRVT 719
>gb|EOY19418.1| Tetratricopeptide repeat (TPR)-like superfamily protein isoform 3
[Theobroma cacao]
Length = 755
Score = 100 bits (249), Expect = 8e-19
Identities = 57/97 (58%), Positives = 70/97 (72%), Gaps = 11/97 (11%)
Frame = +3
Query: 3 CLQSNIPSATGKSGTASLPLQ--SGPAPSTSDLSDSSK---------FRSRDRQPGKRKD 149
CLQS++P+ K TA LP Q +GPAPSTSDLS SSK FR RDR GKRKD
Sbjct: 641 CLQSDLPTGQTKKLTA-LPSQRTTGPAPSTSDLSGSSKSHPIPSSSSFRPRDRHLGKRKD 699
Query: 150 MDRQEDEVSMTAQSQPLPRDVFKIRQLQKTRVGNSSR 260
+DRQE++ + T QSQPLPRDVF+IRQ+QK R G++S+
Sbjct: 700 LDRQEEDETTTVQSQPLPRDVFRIRQIQKARGGSASQ 736
>gb|EOY19416.1| Tetratricopeptide repeat-like superfamily protein isoform 1
[Theobroma cacao]
Length = 761
Score = 100 bits (249), Expect = 8e-19
Identities = 57/97 (58%), Positives = 70/97 (72%), Gaps = 11/97 (11%)
Frame = +3
Query: 3 CLQSNIPSATGKSGTASLPLQ--SGPAPSTSDLSDSSK---------FRSRDRQPGKRKD 149
CLQS++P+ K TA LP Q +GPAPSTSDLS SSK FR RDR GKRKD
Sbjct: 647 CLQSDLPTGQTKKLTA-LPSQRTTGPAPSTSDLSGSSKSHPIPSSSSFRPRDRHLGKRKD 705
Query: 150 MDRQEDEVSMTAQSQPLPRDVFKIRQLQKTRVGNSSR 260
+DRQE++ + T QSQPLPRDVF+IRQ+QK R G++S+
Sbjct: 706 LDRQEEDETTTVQSQPLPRDVFRIRQIQKARGGSASQ 742
>ref|XP_002303484.1| suppressor of forked family protein [Populus trichocarpa]
gi|222840916|gb|EEE78463.1| suppressor of forked family
protein [Populus trichocarpa]
Length = 769
Score = 100 bits (249), Expect = 8e-19
Identities = 55/98 (56%), Positives = 69/98 (70%), Gaps = 10/98 (10%)
Frame = +3
Query: 3 CLQSNIP-SATGKSGTASLPLQSGPAPSTSDLSDSSK---------FRSRDRQPGKRKDM 152
CLQS++P TGKSGT P+ SGPA TSDLS SS+ F++RDRQ GKRKD
Sbjct: 656 CLQSDVPVGKTGKSGTTQTPMLSGPA--TSDLSGSSRSRPVPSGSSFKTRDRQSGKRKDR 713
Query: 153 DRQEDEVSMTAQSQPLPRDVFKIRQLQKTRVGNSSRVT 266
DRQE++ + T QSQPLPRDVF+IRQ+QK+R ++ T
Sbjct: 714 DRQEEDETATVQSQPLPRDVFRIRQIQKSRAAATTSQT 751
>ref|XP_002265193.1| PREDICTED: cleavage stimulation factor subunit 3 [Vitis vinifera]
gi|297736046|emb|CBI24084.3| unnamed protein product
[Vitis vinifera]
Length = 769
Score = 99.4 bits (246), Expect = 2e-18
Identities = 56/96 (58%), Positives = 68/96 (70%), Gaps = 10/96 (10%)
Frame = +3
Query: 3 CLQSNIPSATGKSGTASLPLQSGPAPSTSDLSDSSKFRS----------RDRQPGKRKDM 152
CLQSN+ +TG++G S L +GP PSTSDLS SSK RDRQPGKRKD+
Sbjct: 658 CLQSNV--STGQTGL-STQLAAGPVPSTSDLSGSSKSHPVPSGSSFKPMRDRQPGKRKDL 714
Query: 153 DRQEDEVSMTAQSQPLPRDVFKIRQLQKTRVGNSSR 260
DRQED+ + TAQS PLPRDVFKIRQ++K R G +S+
Sbjct: 715 DRQEDDETATAQSLPLPRDVFKIRQIRKARGGTTSQ 750
>ref|XP_002519397.1| plant RNA cleavage stimulation factor, putative [Ricinus communis]
gi|223541464|gb|EEF43014.1| plant RNA cleavage
stimulation factor, putative [Ricinus communis]
Length = 767
Score = 92.0 bits (227), Expect = 3e-16
Identities = 52/92 (56%), Positives = 66/92 (71%), Gaps = 6/92 (6%)
Frame = +3
Query: 3 CLQSNIPSAT-GKSGTASLPLQSGPAPSTSDLSDSSKFR-----SRDRQPGKRKDMDRQE 164
CLQS + + GK GT S + + PAP+TSDLS SSK R SRDRQ GKRKD++RQE
Sbjct: 658 CLQSELTNGQMGKLGT-SPAVPAPPAPATSDLSGSSKSRPVLKPSRDRQSGKRKDIERQE 716
Query: 165 DEVSMTAQSQPLPRDVFKIRQLQKTRVGNSSR 260
++ + T QSQPLPRD+F+IR QK RVG +S+
Sbjct: 717 EDETATVQSQPLPRDIFRIRHSQKARVGTASQ 748
>gb|EOY19419.1| Tetratricopeptide repeat-like superfamily protein isoform 4
[Theobroma cacao]
Length = 657
Score = 90.9 bits (224), Expect = 6e-16
Identities = 56/105 (53%), Positives = 69/105 (65%), Gaps = 19/105 (18%)
Frame = +3
Query: 3 CLQSNIPSATGKSGTASLPLQ--SGPAPSTSDLSDSSK---------FRSRDRQPGKRKD 149
CLQS++P+ K TA LP Q +GPAPSTSDLS SSK FR RDR GKRKD
Sbjct: 535 CLQSDLPTGQTKKLTA-LPSQRTTGPAPSTSDLSGSSKSHPIPSSSSFRPRDRHLGKRKD 593
Query: 150 MDR--------QEDEVSMTAQSQPLPRDVFKIRQLQKTRVGNSSR 260
+D QE++ + T QSQPLPRDVF+IRQ+QK R G++S+
Sbjct: 594 LDSKFPAVFMGQEEDETTTVQSQPLPRDVFRIRQIQKARGGSASQ 638
>gb|EOY19417.1| Tetratricopeptide repeat-like superfamily protein isoform 2
[Theobroma cacao]
Length = 717
Score = 90.9 bits (224), Expect = 6e-16
Identities = 56/105 (53%), Positives = 69/105 (65%), Gaps = 19/105 (18%)
Frame = +3
Query: 3 CLQSNIPSATGKSGTASLPLQ--SGPAPSTSDLSDSSK---------FRSRDRQPGKRKD 149
CLQS++P+ K TA LP Q +GPAPSTSDLS SSK FR RDR GKRKD
Sbjct: 595 CLQSDLPTGQTKKLTA-LPSQRTTGPAPSTSDLSGSSKSHPIPSSSSFRPRDRHLGKRKD 653
Query: 150 MDR--------QEDEVSMTAQSQPLPRDVFKIRQLQKTRVGNSSR 260
+D QE++ + T QSQPLPRDVF+IRQ+QK R G++S+
Sbjct: 654 LDSKFPAVFMGQEEDETTTVQSQPLPRDVFRIRQIQKARGGSASQ 698
>ref|XP_004165274.1| PREDICTED: LOW QUALITY PROTEIN: cleavage stimulation factor subunit
3-like [Cucumis sativus]
Length = 460
Score = 89.4 bits (220), Expect = 2e-15
Identities = 48/96 (50%), Positives = 61/96 (63%), Gaps = 10/96 (10%)
Frame = +3
Query: 3 CLQSNIPSAT-GKSGTASLPLQSGPAPSTSDLSDSSKFRS---------RDRQPGKRKDM 152
CL+S++P+ KSG + GP P+TSDLS SSK + RD+Q GKRKD
Sbjct: 346 CLESDLPTVPLVKSGATPAQVSGGPVPTTSDLSGSSKSHAFSNSSLKHTRDKQSGKRKDY 405
Query: 153 DRQEDEVSMTAQSQPLPRDVFKIRQLQKTRVGNSSR 260
DRQED S T QSQP+P+D F+IRQ+QK R SS+
Sbjct: 406 DRQEDNESTTVQSQPMPKDXFRIRQIQKARGATSSQ 441
>ref|XP_004144686.1| PREDICTED: cleavage stimulation factor subunit 3-like [Cucumis
sativus]
Length = 871
Score = 89.4 bits (220), Expect = 2e-15
Identities = 48/96 (50%), Positives = 61/96 (63%), Gaps = 10/96 (10%)
Frame = +3
Query: 3 CLQSNIPSAT-GKSGTASLPLQSGPAPSTSDLSDSSKFRS---------RDRQPGKRKDM 152
CL+S++P+ KSG + GP P+TSDLS SSK + RD+Q GKRKD
Sbjct: 757 CLESDLPTVPLVKSGATPAQVSGGPVPTTSDLSGSSKSHAFSNSSLKHTRDKQSGKRKDY 816
Query: 153 DRQEDEVSMTAQSQPLPRDVFKIRQLQKTRVGNSSR 260
DRQED S T QSQP+P+D F+IRQ+QK R SS+
Sbjct: 817 DRQEDNESTTVQSQPMPKDFFRIRQIQKARGATSSQ 852
>gb|EXB59942.1| Cleavage stimulation factor subunit 3 [Morus notabilis]
Length = 782
Score = 83.6 bits (205), Expect = 1e-13
Identities = 49/91 (53%), Positives = 62/91 (68%), Gaps = 11/91 (12%)
Frame = +3
Query: 3 CLQSNIPSATG---KSGTASLPLQSGPAPSTSDLSDSSK------FRSRDRQPGKRKDMD 155
CLQS++P+A KSGTA++ L+SG AP+TSDLS S+K S GKRKD+D
Sbjct: 668 CLQSDLPAAPAGNVKSGTATMQLRSGAAPTTSDLSGSTKPHPVPSASSFKPNRGKRKDVD 727
Query: 156 RQED--EVSMTAQSQPLPRDVFKIRQLQKTR 242
RQ+D + + T QSQPLPRD F+IRQ QK R
Sbjct: 728 RQDDYDDDTRTVQSQPLPRDAFRIRQFQKAR 758
>ref|XP_004489637.1| PREDICTED: LOW QUALITY PROTEIN: cleavage stimulation factor subunit
3-like [Cicer arietinum]
Length = 755
Score = 81.3 bits (199), Expect = 5e-13
Identities = 47/98 (47%), Positives = 61/98 (62%), Gaps = 12/98 (12%)
Frame = +3
Query: 3 CLQSNIPSATGKSGTASLPLQSGPAPSTSDLSDSSKFRSRD------------RQPGKRK 146
CLQS++P GK+G S AP+TS+LS SSK S +Q GKRK
Sbjct: 640 CLQSDLPIG-GKTGIPSQLPVGAAAPATSELSGSSKSHSHPVQTGLSHKPTNRQQYGKRK 698
Query: 147 DMDRQEDEVSMTAQSQPLPRDVFKIRQLQKTRVGNSSR 260
++DRQED+ + T QSQPLPRD F+IRQ QK R G++S+
Sbjct: 699 ELDRQEDDDTTTVQSQPLPRDAFRIRQYQKARAGSTSQ 736
>ref|XP_003618920.1| mRNA 3'-end-processing protein rna14 [Medicago truncatula]
gi|355493935|gb|AES75138.1| mRNA 3'-end-processing
protein rna14 [Medicago truncatula]
Length = 737
Score = 79.7 bits (195), Expect = 1e-12
Identities = 45/98 (45%), Positives = 64/98 (65%), Gaps = 12/98 (12%)
Frame = +3
Query: 3 CLQSNIPSATGKSGTASLPLQ--SGPAPSTSDLSDSSK----------FRSRDRQPGKRK 146
CLQS++P TG+S +P Q +GPAP+TS+LS SSK + +Q GKRK
Sbjct: 623 CLQSDLP--TGQSVKVGIPSQLPAGPAPATSELSGSSKSHPVQSGLSHMQPGRKQYGKRK 680
Query: 147 DMDRQEDEVSMTAQSQPLPRDVFKIRQLQKTRVGNSSR 260
+D QE++ + + QSQPLP+D F+IRQ QK R G++S+
Sbjct: 681 QLDSQEEDDTKSVQSQPLPQDAFRIRQFQKARAGSTSQ 718
>gb|ESW23484.1| hypothetical protein PHAVU_004G051000g [Phaseolus vulgaris]
Length = 738
Score = 78.6 bits (192), Expect = 3e-12
Identities = 48/108 (44%), Positives = 63/108 (58%), Gaps = 22/108 (20%)
Frame = +3
Query: 3 CLQSNIPSA------------TGKSGTASLPLQSGPAPSTSDLSDSSKFR---------- 116
CLQS++P+ TGK G S L +G AP+TS+LS SSK
Sbjct: 613 CLQSDLPTGQSAKIGISTQVQTGKGGIPS-QLPAGSAPATSELSGSSKSHPVPSGVSLKP 671
Query: 117 SRDRQPGKRKDMDRQEDEVSMTAQSQPLPRDVFKIRQLQKTRVGNSSR 260
+RQ GKRK+ +RQED+ + T QSQPLPRD F+IRQ QK R ++S+
Sbjct: 672 GSNRQYGKRKESERQEDDDTTTVQSQPLPRDAFRIRQYQKARASSASQ 719
>gb|EMJ28185.1| hypothetical protein PRUPE_ppa002118mg [Prunus persica]
Length = 714
Score = 78.6 bits (192), Expect = 3e-12
Identities = 48/87 (55%), Positives = 57/87 (65%), Gaps = 7/87 (8%)
Frame = +3
Query: 3 CLQSNIPSAT-GKSGTASLPLQSGPAPSTSDLSDSSKFR------SRDRQPGKRKDMDRQ 161
CLQS++P+ GKSG A + L S PAPSTSDLS SSK S GKRK DRQ
Sbjct: 605 CLQSDVPAPQPGKSGAAPMQLPSIPAPSTSDLSVSSKSHPIPSASSFKPARGKRKHFDRQ 664
Query: 162 EDEVSMTAQSQPLPRDVFKIRQLQKTR 242
E+E + + QS PLPRD F+IRQ+QK R
Sbjct: 665 EEEEA-SVQSHPLPRDAFRIRQIQKAR 690
>ref|XP_006604052.1| PREDICTED: cleavage stimulation factor subunit 3-like [Glycine max]
Length = 739
Score = 74.3 bits (181), Expect = 6e-11
Identities = 46/110 (41%), Positives = 63/110 (57%), Gaps = 24/110 (21%)
Frame = +3
Query: 3 CLQSNIPSA------------TGKSGT-ASLPLQSGPAPSTSDLSDSSKFR--------- 116
CLQS++P+ +GK+G A LP S PA + S+LS SSK
Sbjct: 611 CLQSDLPTGQSVKTGIPTQVQSGKAGIPALLPAGSAPAAAASELSGSSKSHPAPSGGVSL 670
Query: 117 --SRDRQPGKRKDMDRQEDEVSMTAQSQPLPRDVFKIRQLQKTRVGNSSR 260
+RQ GKRK+ DRQ+++ + T QSQPLPRD F+IRQ QK R ++S+
Sbjct: 671 KPGSNRQYGKRKEPDRQDEDDTTTVQSQPLPRDAFRIRQYQKARASSASQ 720
>ref|XP_004300057.1| PREDICTED: cleavage stimulation factor subunit 3-like [Fragaria
vesca subsp. vesca]
Length = 762
Score = 73.6 bits (179), Expect = 1e-10
Identities = 49/94 (52%), Positives = 61/94 (64%), Gaps = 8/94 (8%)
Frame = +3
Query: 3 CLQSNIPSATG-KSGTASLPLQSGPAPSTSDLSDSSKFR------SRDRQPGKRKDMDRQ 161
CLQS+IP+ KSGTA + S PAPSTSDLS SSK S GKRK++DR+
Sbjct: 647 CLQSDIPAPQPVKSGTAHVQFPSVPAPSTSDLSVSSKSHPIPSGSSFKPTRGKRKNIDRK 706
Query: 162 EDEVSMTAQSQPLPRDVFKIRQLQK-TRVGNSSR 260
DE T QSQPLP D F+IRQ+Q+ +R ++SR
Sbjct: 707 -DEDETTVQSQPLPTDAFRIRQIQRASRSASASR 739