BLASTX nr result
ID: Atropa21_contig00036262
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Atropa21_contig00036262
(880 letters)
Database: nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006356601.1| PREDICTED: cleavage stimulation factor subun... 151 3e-34
ref|XP_006356598.1| PREDICTED: cleavage stimulation factor subun... 151 3e-34
ref|XP_004248746.1| PREDICTED: cleavage stimulation factor subun... 145 2e-32
ref|XP_004248745.1| PREDICTED: cleavage stimulation factor subun... 145 2e-32
gb|EOY19418.1| Tetratricopeptide repeat (TPR)-like superfamily p... 96 2e-17
gb|EOY19416.1| Tetratricopeptide repeat-like superfamily protein... 96 2e-17
ref|XP_002303484.1| suppressor of forked family protein [Populus... 96 2e-17
ref|XP_002265193.1| PREDICTED: cleavage stimulation factor subun... 92 2e-16
ref|XP_002519397.1| plant RNA cleavage stimulation factor, putat... 92 3e-16
ref|XP_004165274.1| PREDICTED: LOW QUALITY PROTEIN: cleavage sti... 88 5e-15
ref|XP_004144686.1| PREDICTED: cleavage stimulation factor subun... 88 5e-15
gb|EOY19419.1| Tetratricopeptide repeat-like superfamily protein... 86 1e-14
gb|EOY19417.1| Tetratricopeptide repeat-like superfamily protein... 86 1e-14
gb|ESW23484.1| hypothetical protein PHAVU_004G051000g [Phaseolus... 80 1e-12
gb|EXB59942.1| Cleavage stimulation factor subunit 3 [Morus nota... 79 2e-12
ref|XP_004489637.1| PREDICTED: LOW QUALITY PROTEIN: cleavage sti... 79 3e-12
ref|XP_006604052.1| PREDICTED: cleavage stimulation factor subun... 75 4e-11
ref|XP_003618920.1| mRNA 3'-end-processing protein rna14 [Medica... 74 5e-11
gb|EMJ28185.1| hypothetical protein PRUPE_ppa002118mg [Prunus pe... 71 6e-10
ref|XP_004300057.1| PREDICTED: cleavage stimulation factor subun... 70 1e-09
>ref|XP_006356601.1| PREDICTED: cleavage stimulation factor subunit 3-like isoform X4
[Solanum tuberosum]
Length = 601
Score = 151 bits (382), Expect = 3e-34
Identities = 76/82 (92%), Positives = 78/82 (95%)
Frame = -2
Query: 879 PSATGKSGTASLPLQSGPAPSTSDLSDSSKFRSRDRQPGKRKDMGRQEDDESTTIQSQPL 700
P+ATGKSGTASLPLQSG APSTSDLSDSSKFR RDRQPGKRKDM RQEDDESTTIQSQPL
Sbjct: 498 PAATGKSGTASLPLQSGAAPSTSDLSDSSKFRPRDRQPGKRKDMDRQEDDESTTIQSQPL 557
Query: 699 PRDVFKIRQLQKTRVGNSSRVT 634
PRD+FKIRQLQK RVGNSSRVT
Sbjct: 558 PRDLFKIRQLQKNRVGNSSRVT 579
>ref|XP_006356598.1| PREDICTED: cleavage stimulation factor subunit 3-like isoform X1
[Solanum tuberosum] gi|565380421|ref|XP_006356599.1|
PREDICTED: cleavage stimulation factor subunit 3-like
isoform X2 [Solanum tuberosum]
gi|565380423|ref|XP_006356600.1| PREDICTED: cleavage
stimulation factor subunit 3-like isoform X3 [Solanum
tuberosum]
Length = 741
Score = 151 bits (382), Expect = 3e-34
Identities = 76/82 (92%), Positives = 78/82 (95%)
Frame = -2
Query: 879 PSATGKSGTASLPLQSGPAPSTSDLSDSSKFRSRDRQPGKRKDMGRQEDDESTTIQSQPL 700
P+ATGKSGTASLPLQSG APSTSDLSDSSKFR RDRQPGKRKDM RQEDDESTTIQSQPL
Sbjct: 638 PAATGKSGTASLPLQSGAAPSTSDLSDSSKFRPRDRQPGKRKDMDRQEDDESTTIQSQPL 697
Query: 699 PRDVFKIRQLQKTRVGNSSRVT 634
PRD+FKIRQLQK RVGNSSRVT
Sbjct: 698 PRDLFKIRQLQKNRVGNSSRVT 719
>ref|XP_004248746.1| PREDICTED: cleavage stimulation factor subunit 3-like isoform 2
[Solanum lycopersicum]
Length = 734
Score = 145 bits (366), Expect = 2e-32
Identities = 73/82 (89%), Positives = 76/82 (92%)
Frame = -2
Query: 879 PSATGKSGTASLPLQSGPAPSTSDLSDSSKFRSRDRQPGKRKDMGRQEDDESTTIQSQPL 700
P+ATGKSGTASLPL SG APSTSDLSDSSKFR RDRQPGKRKDM R EDDESTT+QSQPL
Sbjct: 631 PAATGKSGTASLPLLSGAAPSTSDLSDSSKFRPRDRQPGKRKDMDRPEDDESTTMQSQPL 690
Query: 699 PRDVFKIRQLQKTRVGNSSRVT 634
PRD+FKIRQLQK RVGNSSRVT
Sbjct: 691 PRDLFKIRQLQKNRVGNSSRVT 712
>ref|XP_004248745.1| PREDICTED: cleavage stimulation factor subunit 3-like isoform 1
[Solanum lycopersicum]
Length = 741
Score = 145 bits (366), Expect = 2e-32
Identities = 73/82 (89%), Positives = 76/82 (92%)
Frame = -2
Query: 879 PSATGKSGTASLPLQSGPAPSTSDLSDSSKFRSRDRQPGKRKDMGRQEDDESTTIQSQPL 700
P+ATGKSGTASLPL SG APSTSDLSDSSKFR RDRQPGKRKDM R EDDESTT+QSQPL
Sbjct: 638 PAATGKSGTASLPLLSGAAPSTSDLSDSSKFRPRDRQPGKRKDMDRPEDDESTTMQSQPL 697
Query: 699 PRDVFKIRQLQKTRVGNSSRVT 634
PRD+FKIRQLQK RVGNSSRVT
Sbjct: 698 PRDLFKIRQLQKNRVGNSSRVT 719
>gb|EOY19418.1| Tetratricopeptide repeat (TPR)-like superfamily protein isoform 3
[Theobroma cacao]
Length = 755
Score = 95.9 bits (237), Expect = 2e-17
Identities = 55/91 (60%), Positives = 66/91 (72%), Gaps = 11/91 (12%)
Frame = -2
Query: 879 PSATGKSGTASLPLQ--SGPAPSTSDLSDSSK---------FRSRDRQPGKRKDMGRQED 733
P+ K TA LP Q +GPAPSTSDLS SSK FR RDR GKRKD+ RQE+
Sbjct: 647 PTGQTKKLTA-LPSQRTTGPAPSTSDLSGSSKSHPIPSSSSFRPRDRHLGKRKDLDRQEE 705
Query: 732 DESTTIQSQPLPRDVFKIRQLQKTRVGNSSR 640
DE+TT+QSQPLPRDVF+IRQ+QK R G++S+
Sbjct: 706 DETTTVQSQPLPRDVFRIRQIQKARGGSASQ 736
>gb|EOY19416.1| Tetratricopeptide repeat-like superfamily protein isoform 1
[Theobroma cacao]
Length = 761
Score = 95.9 bits (237), Expect = 2e-17
Identities = 55/91 (60%), Positives = 66/91 (72%), Gaps = 11/91 (12%)
Frame = -2
Query: 879 PSATGKSGTASLPLQ--SGPAPSTSDLSDSSK---------FRSRDRQPGKRKDMGRQED 733
P+ K TA LP Q +GPAPSTSDLS SSK FR RDR GKRKD+ RQE+
Sbjct: 653 PTGQTKKLTA-LPSQRTTGPAPSTSDLSGSSKSHPIPSSSSFRPRDRHLGKRKDLDRQEE 711
Query: 732 DESTTIQSQPLPRDVFKIRQLQKTRVGNSSR 640
DE+TT+QSQPLPRDVF+IRQ+QK R G++S+
Sbjct: 712 DETTTVQSQPLPRDVFRIRQIQKARGGSASQ 742
>ref|XP_002303484.1| suppressor of forked family protein [Populus trichocarpa]
gi|222840916|gb|EEE78463.1| suppressor of forked family
protein [Populus trichocarpa]
Length = 769
Score = 95.9 bits (237), Expect = 2e-17
Identities = 51/88 (57%), Positives = 63/88 (71%), Gaps = 9/88 (10%)
Frame = -2
Query: 870 TGKSGTASLPLQSGPAPSTSDLSDSSK---------FRSRDRQPGKRKDMGRQEDDESTT 718
TGKSGT P+ SGPA TSDLS SS+ F++RDRQ GKRKD RQE+DE+ T
Sbjct: 666 TGKSGTTQTPMLSGPA--TSDLSGSSRSRPVPSGSSFKTRDRQSGKRKDRDRQEEDETAT 723
Query: 717 IQSQPLPRDVFKIRQLQKTRVGNSSRVT 634
+QSQPLPRDVF+IRQ+QK+R ++ T
Sbjct: 724 VQSQPLPRDVFRIRQIQKSRAAATTSQT 751
>ref|XP_002265193.1| PREDICTED: cleavage stimulation factor subunit 3 [Vitis vinifera]
gi|297736046|emb|CBI24084.3| unnamed protein product
[Vitis vinifera]
Length = 769
Score = 92.4 bits (228), Expect = 2e-16
Identities = 51/88 (57%), Positives = 61/88 (69%), Gaps = 10/88 (11%)
Frame = -2
Query: 873 ATGKSGTASLPLQSGPAPSTSDLSDSSKFRS----------RDRQPGKRKDMGRQEDDES 724
+TG++G S L +GP PSTSDLS SSK RDRQPGKRKD+ RQEDDE+
Sbjct: 664 STGQTGL-STQLAAGPVPSTSDLSGSSKSHPVPSGSSFKPMRDRQPGKRKDLDRQEDDET 722
Query: 723 TTIQSQPLPRDVFKIRQLQKTRVGNSSR 640
T QS PLPRDVFKIRQ++K R G +S+
Sbjct: 723 ATAQSLPLPRDVFKIRQIRKARGGTTSQ 750
>ref|XP_002519397.1| plant RNA cleavage stimulation factor, putative [Ricinus communis]
gi|223541464|gb|EEF43014.1| plant RNA cleavage
stimulation factor, putative [Ricinus communis]
Length = 767
Score = 92.0 bits (227), Expect = 3e-16
Identities = 50/81 (61%), Positives = 61/81 (75%), Gaps = 5/81 (6%)
Frame = -2
Query: 867 GKSGTASLPLQSGPAPSTSDLSDSSKFR-----SRDRQPGKRKDMGRQEDDESTTIQSQP 703
GK GT S + + PAP+TSDLS SSK R SRDRQ GKRKD+ RQE+DE+ T+QSQP
Sbjct: 669 GKLGT-SPAVPAPPAPATSDLSGSSKSRPVLKPSRDRQSGKRKDIERQEEDETATVQSQP 727
Query: 702 LPRDVFKIRQLQKTRVGNSSR 640
LPRD+F+IR QK RVG +S+
Sbjct: 728 LPRDIFRIRHSQKARVGTASQ 748
>ref|XP_004165274.1| PREDICTED: LOW QUALITY PROTEIN: cleavage stimulation factor subunit
3-like [Cucumis sativus]
Length = 460
Score = 87.8 bits (216), Expect = 5e-15
Identities = 45/84 (53%), Positives = 56/84 (66%), Gaps = 9/84 (10%)
Frame = -2
Query: 864 KSGTASLPLQSGPAPSTSDLSDSSKFRS---------RDRQPGKRKDMGRQEDDESTTIQ 712
KSG + GP P+TSDLS SSK + RD+Q GKRKD RQED+ESTT+Q
Sbjct: 358 KSGATPAQVSGGPVPTTSDLSGSSKSHAFSNSSLKHTRDKQSGKRKDYDRQEDNESTTVQ 417
Query: 711 SQPLPRDVFKIRQLQKTRVGNSSR 640
SQP+P+D F+IRQ+QK R SS+
Sbjct: 418 SQPMPKDXFRIRQIQKARGATSSQ 441
>ref|XP_004144686.1| PREDICTED: cleavage stimulation factor subunit 3-like [Cucumis
sativus]
Length = 871
Score = 87.8 bits (216), Expect = 5e-15
Identities = 45/84 (53%), Positives = 56/84 (66%), Gaps = 9/84 (10%)
Frame = -2
Query: 864 KSGTASLPLQSGPAPSTSDLSDSSKFRS---------RDRQPGKRKDMGRQEDDESTTIQ 712
KSG + GP P+TSDLS SSK + RD+Q GKRKD RQED+ESTT+Q
Sbjct: 769 KSGATPAQVSGGPVPTTSDLSGSSKSHAFSNSSLKHTRDKQSGKRKDYDRQEDNESTTVQ 828
Query: 711 SQPLPRDVFKIRQLQKTRVGNSSR 640
SQP+P+D F+IRQ+QK R SS+
Sbjct: 829 SQPMPKDFFRIRQIQKARGATSSQ 852
>gb|EOY19419.1| Tetratricopeptide repeat-like superfamily protein isoform 4
[Theobroma cacao]
Length = 657
Score = 86.3 bits (212), Expect = 1e-14
Identities = 54/99 (54%), Positives = 65/99 (65%), Gaps = 19/99 (19%)
Frame = -2
Query: 879 PSATGKSGTASLPLQ--SGPAPSTSDLSDSSK---------FRSRDRQPGKRKDMGR--- 742
P+ K TA LP Q +GPAPSTSDLS SSK FR RDR GKRKD+
Sbjct: 541 PTGQTKKLTA-LPSQRTTGPAPSTSDLSGSSKSHPIPSSSSFRPRDRHLGKRKDLDSKFP 599
Query: 741 -----QEDDESTTIQSQPLPRDVFKIRQLQKTRVGNSSR 640
QE+DE+TT+QSQPLPRDVF+IRQ+QK R G++S+
Sbjct: 600 AVFMGQEEDETTTVQSQPLPRDVFRIRQIQKARGGSASQ 638
>gb|EOY19417.1| Tetratricopeptide repeat-like superfamily protein isoform 2
[Theobroma cacao]
Length = 717
Score = 86.3 bits (212), Expect = 1e-14
Identities = 54/99 (54%), Positives = 65/99 (65%), Gaps = 19/99 (19%)
Frame = -2
Query: 879 PSATGKSGTASLPLQ--SGPAPSTSDLSDSSK---------FRSRDRQPGKRKDMGR--- 742
P+ K TA LP Q +GPAPSTSDLS SSK FR RDR GKRKD+
Sbjct: 601 PTGQTKKLTA-LPSQRTTGPAPSTSDLSGSSKSHPIPSSSSFRPRDRHLGKRKDLDSKFP 659
Query: 741 -----QEDDESTTIQSQPLPRDVFKIRQLQKTRVGNSSR 640
QE+DE+TT+QSQPLPRDVF+IRQ+QK R G++S+
Sbjct: 660 AVFMGQEEDETTTVQSQPLPRDVFRIRQIQKARGGSASQ 698
>gb|ESW23484.1| hypothetical protein PHAVU_004G051000g [Phaseolus vulgaris]
Length = 738
Score = 80.1 bits (196), Expect = 1e-12
Identities = 45/87 (51%), Positives = 57/87 (65%), Gaps = 10/87 (11%)
Frame = -2
Query: 870 TGKSGTASLPLQSGPAPSTSDLSDSSKFR----------SRDRQPGKRKDMGRQEDDEST 721
TGK G S L +G AP+TS+LS SSK +RQ GKRK+ RQEDD++T
Sbjct: 634 TGKGGIPS-QLPAGSAPATSELSGSSKSHPVPSGVSLKPGSNRQYGKRKESERQEDDDTT 692
Query: 720 TIQSQPLPRDVFKIRQLQKTRVGNSSR 640
T+QSQPLPRD F+IRQ QK R ++S+
Sbjct: 693 TVQSQPLPRDAFRIRQYQKARASSASQ 719
>gb|EXB59942.1| Cleavage stimulation factor subunit 3 [Morus notabilis]
Length = 782
Score = 79.0 bits (193), Expect = 2e-12
Identities = 44/82 (53%), Positives = 56/82 (68%), Gaps = 8/82 (9%)
Frame = -2
Query: 879 PSATGKSGTASLPLQSGPAPSTSDLSDSSK------FRSRDRQPGKRKDMGRQED--DES 724
P+ KSGTA++ L+SG AP+TSDLS S+K S GKRKD+ RQ+D D++
Sbjct: 677 PAGNVKSGTATMQLRSGAAPTTSDLSGSTKPHPVPSASSFKPNRGKRKDVDRQDDYDDDT 736
Query: 723 TTIQSQPLPRDVFKIRQLQKTR 658
T+QSQPLPRD F+IRQ QK R
Sbjct: 737 RTVQSQPLPRDAFRIRQFQKAR 758
>ref|XP_004489637.1| PREDICTED: LOW QUALITY PROTEIN: cleavage stimulation factor subunit
3-like [Cicer arietinum]
Length = 755
Score = 78.6 bits (192), Expect = 3e-12
Identities = 43/88 (48%), Positives = 56/88 (63%), Gaps = 12/88 (13%)
Frame = -2
Query: 867 GKSGTASLPLQSGPAPSTSDLSDSSKFRSRD------------RQPGKRKDMGRQEDDES 724
GK+G S AP+TS+LS SSK S +Q GKRK++ RQEDD++
Sbjct: 649 GKTGIPSQLPVGAAAPATSELSGSSKSHSHPVQTGLSHKPTNRQQYGKRKELDRQEDDDT 708
Query: 723 TTIQSQPLPRDVFKIRQLQKTRVGNSSR 640
TT+QSQPLPRD F+IRQ QK R G++S+
Sbjct: 709 TTVQSQPLPRDAFRIRQYQKARAGSTSQ 736
>ref|XP_006604052.1| PREDICTED: cleavage stimulation factor subunit 3-like [Glycine max]
Length = 739
Score = 74.7 bits (182), Expect = 4e-11
Identities = 42/89 (47%), Positives = 57/89 (64%), Gaps = 12/89 (13%)
Frame = -2
Query: 870 TGKSGT-ASLPLQSGPAPSTSDLSDSSKFR-----------SRDRQPGKRKDMGRQEDDE 727
+GK+G A LP S PA + S+LS SSK +RQ GKRK+ RQ++D+
Sbjct: 632 SGKAGIPALLPAGSAPAAAASELSGSSKSHPAPSGGVSLKPGSNRQYGKRKEPDRQDEDD 691
Query: 726 STTIQSQPLPRDVFKIRQLQKTRVGNSSR 640
+TT+QSQPLPRD F+IRQ QK R ++S+
Sbjct: 692 TTTVQSQPLPRDAFRIRQYQKARASSASQ 720
>ref|XP_003618920.1| mRNA 3'-end-processing protein rna14 [Medicago truncatula]
gi|355493935|gb|AES75138.1| mRNA 3'-end-processing
protein rna14 [Medicago truncatula]
Length = 737
Score = 74.3 bits (181), Expect = 5e-11
Identities = 40/89 (44%), Positives = 58/89 (65%), Gaps = 12/89 (13%)
Frame = -2
Query: 870 TGKSGTASLPLQ--SGPAPSTSDLSDSSK----------FRSRDRQPGKRKDMGRQEDDE 727
TG+S +P Q +GPAP+TS+LS SSK + +Q GKRK + QE+D+
Sbjct: 630 TGQSVKVGIPSQLPAGPAPATSELSGSSKSHPVQSGLSHMQPGRKQYGKRKQLDSQEEDD 689
Query: 726 STTIQSQPLPRDVFKIRQLQKTRVGNSSR 640
+ ++QSQPLP+D F+IRQ QK R G++S+
Sbjct: 690 TKSVQSQPLPQDAFRIRQFQKARAGSTSQ 718
>gb|EMJ28185.1| hypothetical protein PRUPE_ppa002118mg [Prunus persica]
Length = 714
Score = 70.9 bits (172), Expect = 6e-10
Identities = 42/76 (55%), Positives = 50/76 (65%), Gaps = 6/76 (7%)
Frame = -2
Query: 867 GKSGTASLPLQSGPAPSTSDLSDSSKFR------SRDRQPGKRKDMGRQEDDESTTIQSQ 706
GKSG A + L S PAPSTSDLS SSK S GKRK RQE++E++ +QS
Sbjct: 616 GKSGAAPMQLPSIPAPSTSDLSVSSKSHPIPSASSFKPARGKRKHFDRQEEEEAS-VQSH 674
Query: 705 PLPRDVFKIRQLQKTR 658
PLPRD F+IRQ+QK R
Sbjct: 675 PLPRDAFRIRQIQKAR 690
>ref|XP_004300057.1| PREDICTED: cleavage stimulation factor subunit 3-like [Fragaria
vesca subsp. vesca]
Length = 762
Score = 69.7 bits (169), Expect = 1e-09
Identities = 43/82 (52%), Positives = 56/82 (68%), Gaps = 7/82 (8%)
Frame = -2
Query: 864 KSGTASLPLQSGPAPSTSDLSDSSKFR------SRDRQPGKRKDMGRQEDDESTTIQSQP 703
KSGTA + S PAPSTSDLS SSK S GKRK++ R+++DE TT+QSQP
Sbjct: 659 KSGTAHVQFPSVPAPSTSDLSVSSKSHPIPSGSSFKPTRGKRKNIDRKDEDE-TTVQSQP 717
Query: 702 LPRDVFKIRQLQK-TRVGNSSR 640
LP D F+IRQ+Q+ +R ++SR
Sbjct: 718 LPTDAFRIRQIQRASRSASASR 739