BLASTX nr result

ID: Atropa21_contig00036262 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atropa21_contig00036262
         (880 letters)

Database: nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006356601.1| PREDICTED: cleavage stimulation factor subun...   151   3e-34
ref|XP_006356598.1| PREDICTED: cleavage stimulation factor subun...   151   3e-34
ref|XP_004248746.1| PREDICTED: cleavage stimulation factor subun...   145   2e-32
ref|XP_004248745.1| PREDICTED: cleavage stimulation factor subun...   145   2e-32
gb|EOY19418.1| Tetratricopeptide repeat (TPR)-like superfamily p...    96   2e-17
gb|EOY19416.1| Tetratricopeptide repeat-like superfamily protein...    96   2e-17
ref|XP_002303484.1| suppressor of forked family protein [Populus...    96   2e-17
ref|XP_002265193.1| PREDICTED: cleavage stimulation factor subun...    92   2e-16
ref|XP_002519397.1| plant RNA cleavage stimulation factor, putat...    92   3e-16
ref|XP_004165274.1| PREDICTED: LOW QUALITY PROTEIN: cleavage sti...    88   5e-15
ref|XP_004144686.1| PREDICTED: cleavage stimulation factor subun...    88   5e-15
gb|EOY19419.1| Tetratricopeptide repeat-like superfamily protein...    86   1e-14
gb|EOY19417.1| Tetratricopeptide repeat-like superfamily protein...    86   1e-14
gb|ESW23484.1| hypothetical protein PHAVU_004G051000g [Phaseolus...    80   1e-12
gb|EXB59942.1| Cleavage stimulation factor subunit 3 [Morus nota...    79   2e-12
ref|XP_004489637.1| PREDICTED: LOW QUALITY PROTEIN: cleavage sti...    79   3e-12
ref|XP_006604052.1| PREDICTED: cleavage stimulation factor subun...    75   4e-11
ref|XP_003618920.1| mRNA 3'-end-processing protein rna14 [Medica...    74   5e-11
gb|EMJ28185.1| hypothetical protein PRUPE_ppa002118mg [Prunus pe...    71   6e-10
ref|XP_004300057.1| PREDICTED: cleavage stimulation factor subun...    70   1e-09

>ref|XP_006356601.1| PREDICTED: cleavage stimulation factor subunit 3-like isoform X4
           [Solanum tuberosum]
          Length = 601

 Score =  151 bits (382), Expect = 3e-34
 Identities = 76/82 (92%), Positives = 78/82 (95%)
 Frame = -2

Query: 879 PSATGKSGTASLPLQSGPAPSTSDLSDSSKFRSRDRQPGKRKDMGRQEDDESTTIQSQPL 700
           P+ATGKSGTASLPLQSG APSTSDLSDSSKFR RDRQPGKRKDM RQEDDESTTIQSQPL
Sbjct: 498 PAATGKSGTASLPLQSGAAPSTSDLSDSSKFRPRDRQPGKRKDMDRQEDDESTTIQSQPL 557

Query: 699 PRDVFKIRQLQKTRVGNSSRVT 634
           PRD+FKIRQLQK RVGNSSRVT
Sbjct: 558 PRDLFKIRQLQKNRVGNSSRVT 579


>ref|XP_006356598.1| PREDICTED: cleavage stimulation factor subunit 3-like isoform X1
           [Solanum tuberosum] gi|565380421|ref|XP_006356599.1|
           PREDICTED: cleavage stimulation factor subunit 3-like
           isoform X2 [Solanum tuberosum]
           gi|565380423|ref|XP_006356600.1| PREDICTED: cleavage
           stimulation factor subunit 3-like isoform X3 [Solanum
           tuberosum]
          Length = 741

 Score =  151 bits (382), Expect = 3e-34
 Identities = 76/82 (92%), Positives = 78/82 (95%)
 Frame = -2

Query: 879 PSATGKSGTASLPLQSGPAPSTSDLSDSSKFRSRDRQPGKRKDMGRQEDDESTTIQSQPL 700
           P+ATGKSGTASLPLQSG APSTSDLSDSSKFR RDRQPGKRKDM RQEDDESTTIQSQPL
Sbjct: 638 PAATGKSGTASLPLQSGAAPSTSDLSDSSKFRPRDRQPGKRKDMDRQEDDESTTIQSQPL 697

Query: 699 PRDVFKIRQLQKTRVGNSSRVT 634
           PRD+FKIRQLQK RVGNSSRVT
Sbjct: 698 PRDLFKIRQLQKNRVGNSSRVT 719


>ref|XP_004248746.1| PREDICTED: cleavage stimulation factor subunit 3-like isoform 2
           [Solanum lycopersicum]
          Length = 734

 Score =  145 bits (366), Expect = 2e-32
 Identities = 73/82 (89%), Positives = 76/82 (92%)
 Frame = -2

Query: 879 PSATGKSGTASLPLQSGPAPSTSDLSDSSKFRSRDRQPGKRKDMGRQEDDESTTIQSQPL 700
           P+ATGKSGTASLPL SG APSTSDLSDSSKFR RDRQPGKRKDM R EDDESTT+QSQPL
Sbjct: 631 PAATGKSGTASLPLLSGAAPSTSDLSDSSKFRPRDRQPGKRKDMDRPEDDESTTMQSQPL 690

Query: 699 PRDVFKIRQLQKTRVGNSSRVT 634
           PRD+FKIRQLQK RVGNSSRVT
Sbjct: 691 PRDLFKIRQLQKNRVGNSSRVT 712


>ref|XP_004248745.1| PREDICTED: cleavage stimulation factor subunit 3-like isoform 1
           [Solanum lycopersicum]
          Length = 741

 Score =  145 bits (366), Expect = 2e-32
 Identities = 73/82 (89%), Positives = 76/82 (92%)
 Frame = -2

Query: 879 PSATGKSGTASLPLQSGPAPSTSDLSDSSKFRSRDRQPGKRKDMGRQEDDESTTIQSQPL 700
           P+ATGKSGTASLPL SG APSTSDLSDSSKFR RDRQPGKRKDM R EDDESTT+QSQPL
Sbjct: 638 PAATGKSGTASLPLLSGAAPSTSDLSDSSKFRPRDRQPGKRKDMDRPEDDESTTMQSQPL 697

Query: 699 PRDVFKIRQLQKTRVGNSSRVT 634
           PRD+FKIRQLQK RVGNSSRVT
Sbjct: 698 PRDLFKIRQLQKNRVGNSSRVT 719


>gb|EOY19418.1| Tetratricopeptide repeat (TPR)-like superfamily protein isoform 3
           [Theobroma cacao]
          Length = 755

 Score = 95.9 bits (237), Expect = 2e-17
 Identities = 55/91 (60%), Positives = 66/91 (72%), Gaps = 11/91 (12%)
 Frame = -2

Query: 879 PSATGKSGTASLPLQ--SGPAPSTSDLSDSSK---------FRSRDRQPGKRKDMGRQED 733
           P+   K  TA LP Q  +GPAPSTSDLS SSK         FR RDR  GKRKD+ RQE+
Sbjct: 647 PTGQTKKLTA-LPSQRTTGPAPSTSDLSGSSKSHPIPSSSSFRPRDRHLGKRKDLDRQEE 705

Query: 732 DESTTIQSQPLPRDVFKIRQLQKTRVGNSSR 640
           DE+TT+QSQPLPRDVF+IRQ+QK R G++S+
Sbjct: 706 DETTTVQSQPLPRDVFRIRQIQKARGGSASQ 736


>gb|EOY19416.1| Tetratricopeptide repeat-like superfamily protein isoform 1
           [Theobroma cacao]
          Length = 761

 Score = 95.9 bits (237), Expect = 2e-17
 Identities = 55/91 (60%), Positives = 66/91 (72%), Gaps = 11/91 (12%)
 Frame = -2

Query: 879 PSATGKSGTASLPLQ--SGPAPSTSDLSDSSK---------FRSRDRQPGKRKDMGRQED 733
           P+   K  TA LP Q  +GPAPSTSDLS SSK         FR RDR  GKRKD+ RQE+
Sbjct: 653 PTGQTKKLTA-LPSQRTTGPAPSTSDLSGSSKSHPIPSSSSFRPRDRHLGKRKDLDRQEE 711

Query: 732 DESTTIQSQPLPRDVFKIRQLQKTRVGNSSR 640
           DE+TT+QSQPLPRDVF+IRQ+QK R G++S+
Sbjct: 712 DETTTVQSQPLPRDVFRIRQIQKARGGSASQ 742


>ref|XP_002303484.1| suppressor of forked family protein [Populus trichocarpa]
           gi|222840916|gb|EEE78463.1| suppressor of forked family
           protein [Populus trichocarpa]
          Length = 769

 Score = 95.9 bits (237), Expect = 2e-17
 Identities = 51/88 (57%), Positives = 63/88 (71%), Gaps = 9/88 (10%)
 Frame = -2

Query: 870 TGKSGTASLPLQSGPAPSTSDLSDSSK---------FRSRDRQPGKRKDMGRQEDDESTT 718
           TGKSGT   P+ SGPA  TSDLS SS+         F++RDRQ GKRKD  RQE+DE+ T
Sbjct: 666 TGKSGTTQTPMLSGPA--TSDLSGSSRSRPVPSGSSFKTRDRQSGKRKDRDRQEEDETAT 723

Query: 717 IQSQPLPRDVFKIRQLQKTRVGNSSRVT 634
           +QSQPLPRDVF+IRQ+QK+R   ++  T
Sbjct: 724 VQSQPLPRDVFRIRQIQKSRAAATTSQT 751


>ref|XP_002265193.1| PREDICTED: cleavage stimulation factor subunit 3 [Vitis vinifera]
           gi|297736046|emb|CBI24084.3| unnamed protein product
           [Vitis vinifera]
          Length = 769

 Score = 92.4 bits (228), Expect = 2e-16
 Identities = 51/88 (57%), Positives = 61/88 (69%), Gaps = 10/88 (11%)
 Frame = -2

Query: 873 ATGKSGTASLPLQSGPAPSTSDLSDSSKFRS----------RDRQPGKRKDMGRQEDDES 724
           +TG++G  S  L +GP PSTSDLS SSK             RDRQPGKRKD+ RQEDDE+
Sbjct: 664 STGQTGL-STQLAAGPVPSTSDLSGSSKSHPVPSGSSFKPMRDRQPGKRKDLDRQEDDET 722

Query: 723 TTIQSQPLPRDVFKIRQLQKTRVGNSSR 640
            T QS PLPRDVFKIRQ++K R G +S+
Sbjct: 723 ATAQSLPLPRDVFKIRQIRKARGGTTSQ 750


>ref|XP_002519397.1| plant RNA cleavage stimulation factor, putative [Ricinus communis]
           gi|223541464|gb|EEF43014.1| plant RNA cleavage
           stimulation factor, putative [Ricinus communis]
          Length = 767

 Score = 92.0 bits (227), Expect = 3e-16
 Identities = 50/81 (61%), Positives = 61/81 (75%), Gaps = 5/81 (6%)
 Frame = -2

Query: 867 GKSGTASLPLQSGPAPSTSDLSDSSKFR-----SRDRQPGKRKDMGRQEDDESTTIQSQP 703
           GK GT S  + + PAP+TSDLS SSK R     SRDRQ GKRKD+ RQE+DE+ T+QSQP
Sbjct: 669 GKLGT-SPAVPAPPAPATSDLSGSSKSRPVLKPSRDRQSGKRKDIERQEEDETATVQSQP 727

Query: 702 LPRDVFKIRQLQKTRVGNSSR 640
           LPRD+F+IR  QK RVG +S+
Sbjct: 728 LPRDIFRIRHSQKARVGTASQ 748


>ref|XP_004165274.1| PREDICTED: LOW QUALITY PROTEIN: cleavage stimulation factor subunit
           3-like [Cucumis sativus]
          Length = 460

 Score = 87.8 bits (216), Expect = 5e-15
 Identities = 45/84 (53%), Positives = 56/84 (66%), Gaps = 9/84 (10%)
 Frame = -2

Query: 864 KSGTASLPLQSGPAPSTSDLSDSSKFRS---------RDRQPGKRKDMGRQEDDESTTIQ 712
           KSG     +  GP P+TSDLS SSK  +         RD+Q GKRKD  RQED+ESTT+Q
Sbjct: 358 KSGATPAQVSGGPVPTTSDLSGSSKSHAFSNSSLKHTRDKQSGKRKDYDRQEDNESTTVQ 417

Query: 711 SQPLPRDVFKIRQLQKTRVGNSSR 640
           SQP+P+D F+IRQ+QK R   SS+
Sbjct: 418 SQPMPKDXFRIRQIQKARGATSSQ 441


>ref|XP_004144686.1| PREDICTED: cleavage stimulation factor subunit 3-like [Cucumis
            sativus]
          Length = 871

 Score = 87.8 bits (216), Expect = 5e-15
 Identities = 45/84 (53%), Positives = 56/84 (66%), Gaps = 9/84 (10%)
 Frame = -2

Query: 864  KSGTASLPLQSGPAPSTSDLSDSSKFRS---------RDRQPGKRKDMGRQEDDESTTIQ 712
            KSG     +  GP P+TSDLS SSK  +         RD+Q GKRKD  RQED+ESTT+Q
Sbjct: 769  KSGATPAQVSGGPVPTTSDLSGSSKSHAFSNSSLKHTRDKQSGKRKDYDRQEDNESTTVQ 828

Query: 711  SQPLPRDVFKIRQLQKTRVGNSSR 640
            SQP+P+D F+IRQ+QK R   SS+
Sbjct: 829  SQPMPKDFFRIRQIQKARGATSSQ 852


>gb|EOY19419.1| Tetratricopeptide repeat-like superfamily protein isoform 4
           [Theobroma cacao]
          Length = 657

 Score = 86.3 bits (212), Expect = 1e-14
 Identities = 54/99 (54%), Positives = 65/99 (65%), Gaps = 19/99 (19%)
 Frame = -2

Query: 879 PSATGKSGTASLPLQ--SGPAPSTSDLSDSSK---------FRSRDRQPGKRKDMGR--- 742
           P+   K  TA LP Q  +GPAPSTSDLS SSK         FR RDR  GKRKD+     
Sbjct: 541 PTGQTKKLTA-LPSQRTTGPAPSTSDLSGSSKSHPIPSSSSFRPRDRHLGKRKDLDSKFP 599

Query: 741 -----QEDDESTTIQSQPLPRDVFKIRQLQKTRVGNSSR 640
                QE+DE+TT+QSQPLPRDVF+IRQ+QK R G++S+
Sbjct: 600 AVFMGQEEDETTTVQSQPLPRDVFRIRQIQKARGGSASQ 638


>gb|EOY19417.1| Tetratricopeptide repeat-like superfamily protein isoform 2
           [Theobroma cacao]
          Length = 717

 Score = 86.3 bits (212), Expect = 1e-14
 Identities = 54/99 (54%), Positives = 65/99 (65%), Gaps = 19/99 (19%)
 Frame = -2

Query: 879 PSATGKSGTASLPLQ--SGPAPSTSDLSDSSK---------FRSRDRQPGKRKDMGR--- 742
           P+   K  TA LP Q  +GPAPSTSDLS SSK         FR RDR  GKRKD+     
Sbjct: 601 PTGQTKKLTA-LPSQRTTGPAPSTSDLSGSSKSHPIPSSSSFRPRDRHLGKRKDLDSKFP 659

Query: 741 -----QEDDESTTIQSQPLPRDVFKIRQLQKTRVGNSSR 640
                QE+DE+TT+QSQPLPRDVF+IRQ+QK R G++S+
Sbjct: 660 AVFMGQEEDETTTVQSQPLPRDVFRIRQIQKARGGSASQ 698


>gb|ESW23484.1| hypothetical protein PHAVU_004G051000g [Phaseolus vulgaris]
          Length = 738

 Score = 80.1 bits (196), Expect = 1e-12
 Identities = 45/87 (51%), Positives = 57/87 (65%), Gaps = 10/87 (11%)
 Frame = -2

Query: 870 TGKSGTASLPLQSGPAPSTSDLSDSSKFR----------SRDRQPGKRKDMGRQEDDEST 721
           TGK G  S  L +G AP+TS+LS SSK              +RQ GKRK+  RQEDD++T
Sbjct: 634 TGKGGIPS-QLPAGSAPATSELSGSSKSHPVPSGVSLKPGSNRQYGKRKESERQEDDDTT 692

Query: 720 TIQSQPLPRDVFKIRQLQKTRVGNSSR 640
           T+QSQPLPRD F+IRQ QK R  ++S+
Sbjct: 693 TVQSQPLPRDAFRIRQYQKARASSASQ 719


>gb|EXB59942.1| Cleavage stimulation factor subunit 3 [Morus notabilis]
          Length = 782

 Score = 79.0 bits (193), Expect = 2e-12
 Identities = 44/82 (53%), Positives = 56/82 (68%), Gaps = 8/82 (9%)
 Frame = -2

Query: 879 PSATGKSGTASLPLQSGPAPSTSDLSDSSK------FRSRDRQPGKRKDMGRQED--DES 724
           P+   KSGTA++ L+SG AP+TSDLS S+K        S     GKRKD+ RQ+D  D++
Sbjct: 677 PAGNVKSGTATMQLRSGAAPTTSDLSGSTKPHPVPSASSFKPNRGKRKDVDRQDDYDDDT 736

Query: 723 TTIQSQPLPRDVFKIRQLQKTR 658
            T+QSQPLPRD F+IRQ QK R
Sbjct: 737 RTVQSQPLPRDAFRIRQFQKAR 758


>ref|XP_004489637.1| PREDICTED: LOW QUALITY PROTEIN: cleavage stimulation factor subunit
           3-like [Cicer arietinum]
          Length = 755

 Score = 78.6 bits (192), Expect = 3e-12
 Identities = 43/88 (48%), Positives = 56/88 (63%), Gaps = 12/88 (13%)
 Frame = -2

Query: 867 GKSGTASLPLQSGPAPSTSDLSDSSKFRSRD------------RQPGKRKDMGRQEDDES 724
           GK+G  S       AP+TS+LS SSK  S              +Q GKRK++ RQEDD++
Sbjct: 649 GKTGIPSQLPVGAAAPATSELSGSSKSHSHPVQTGLSHKPTNRQQYGKRKELDRQEDDDT 708

Query: 723 TTIQSQPLPRDVFKIRQLQKTRVGNSSR 640
           TT+QSQPLPRD F+IRQ QK R G++S+
Sbjct: 709 TTVQSQPLPRDAFRIRQYQKARAGSTSQ 736


>ref|XP_006604052.1| PREDICTED: cleavage stimulation factor subunit 3-like [Glycine max]
          Length = 739

 Score = 74.7 bits (182), Expect = 4e-11
 Identities = 42/89 (47%), Positives = 57/89 (64%), Gaps = 12/89 (13%)
 Frame = -2

Query: 870 TGKSGT-ASLPLQSGPAPSTSDLSDSSKFR-----------SRDRQPGKRKDMGRQEDDE 727
           +GK+G  A LP  S PA + S+LS SSK               +RQ GKRK+  RQ++D+
Sbjct: 632 SGKAGIPALLPAGSAPAAAASELSGSSKSHPAPSGGVSLKPGSNRQYGKRKEPDRQDEDD 691

Query: 726 STTIQSQPLPRDVFKIRQLQKTRVGNSSR 640
           +TT+QSQPLPRD F+IRQ QK R  ++S+
Sbjct: 692 TTTVQSQPLPRDAFRIRQYQKARASSASQ 720


>ref|XP_003618920.1| mRNA 3'-end-processing protein rna14 [Medicago truncatula]
           gi|355493935|gb|AES75138.1| mRNA 3'-end-processing
           protein rna14 [Medicago truncatula]
          Length = 737

 Score = 74.3 bits (181), Expect = 5e-11
 Identities = 40/89 (44%), Positives = 58/89 (65%), Gaps = 12/89 (13%)
 Frame = -2

Query: 870 TGKSGTASLPLQ--SGPAPSTSDLSDSSK----------FRSRDRQPGKRKDMGRQEDDE 727
           TG+S    +P Q  +GPAP+TS+LS SSK           +   +Q GKRK +  QE+D+
Sbjct: 630 TGQSVKVGIPSQLPAGPAPATSELSGSSKSHPVQSGLSHMQPGRKQYGKRKQLDSQEEDD 689

Query: 726 STTIQSQPLPRDVFKIRQLQKTRVGNSSR 640
           + ++QSQPLP+D F+IRQ QK R G++S+
Sbjct: 690 TKSVQSQPLPQDAFRIRQFQKARAGSTSQ 718


>gb|EMJ28185.1| hypothetical protein PRUPE_ppa002118mg [Prunus persica]
          Length = 714

 Score = 70.9 bits (172), Expect = 6e-10
 Identities = 42/76 (55%), Positives = 50/76 (65%), Gaps = 6/76 (7%)
 Frame = -2

Query: 867 GKSGTASLPLQSGPAPSTSDLSDSSKFR------SRDRQPGKRKDMGRQEDDESTTIQSQ 706
           GKSG A + L S PAPSTSDLS SSK        S     GKRK   RQE++E++ +QS 
Sbjct: 616 GKSGAAPMQLPSIPAPSTSDLSVSSKSHPIPSASSFKPARGKRKHFDRQEEEEAS-VQSH 674

Query: 705 PLPRDVFKIRQLQKTR 658
           PLPRD F+IRQ+QK R
Sbjct: 675 PLPRDAFRIRQIQKAR 690


>ref|XP_004300057.1| PREDICTED: cleavage stimulation factor subunit 3-like [Fragaria
           vesca subsp. vesca]
          Length = 762

 Score = 69.7 bits (169), Expect = 1e-09
 Identities = 43/82 (52%), Positives = 56/82 (68%), Gaps = 7/82 (8%)
 Frame = -2

Query: 864 KSGTASLPLQSGPAPSTSDLSDSSKFR------SRDRQPGKRKDMGRQEDDESTTIQSQP 703
           KSGTA +   S PAPSTSDLS SSK        S     GKRK++ R+++DE TT+QSQP
Sbjct: 659 KSGTAHVQFPSVPAPSTSDLSVSSKSHPIPSGSSFKPTRGKRKNIDRKDEDE-TTVQSQP 717

Query: 702 LPRDVFKIRQLQK-TRVGNSSR 640
           LP D F+IRQ+Q+ +R  ++SR
Sbjct: 718 LPTDAFRIRQIQRASRSASASR 739


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