BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atropa21_contig00036219
         (626 letters)

Database: nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004253224.1| PREDICTED: uncharacterized protein LOC101268...   187   2e-59
emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga...   168   1e-48
ref|XP_004239600.1| PREDICTED: uncharacterized protein LOC101264...   137   1e-40
emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulga...   165   9e-39
ref|YP_004222309.1| hypothetical protein BevumaM_p074 [Beta vulg...   158   1e-36
ref|XP_006584238.1| PREDICTED: uncharacterized protein LOC102664...   131   1e-34
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta...   119   2e-31
emb|CAB10226.1| reverse transcriptase like protein [Arabidopsis ...   123   2e-31
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...   114   6e-31
gb|ABD33261.1| RNA-directed DNA polymerase (Reverse transcriptas...   139   7e-31
emb|CAB72467.1| putative protein [Arabidopsis thaliana]               115   2e-30
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta...   116   2e-30
gb|AAF87143.1|AC002423_8 T23E23.16 [Arabidopsis thaliana]             114   2e-30
gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]                115   1e-29
gb|AAD22330.1| putative non-LTR retroelement reverse transcripta...   114   2e-29
emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thal...   119   4e-29
gb|AAC95175.1| putative non-LTR retroelement reverse transcripta...   103   5e-29
gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]               112   2e-28
gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thal...   103   3e-28
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip...   110   4e-28

>ref|XP_004253224.1| PREDICTED: uncharacterized protein LOC101268376 [Solanum
           lycopersicum]
          Length = 717

 Score =  187 bits (474), Expect(3) = 2e-59
 Identities = 89/142 (62%), Positives = 112/142 (78%)
 Frame = +2

Query: 2   RKHISPRCMIKVNLKKASDSVEWVYLEQVMEGIDFPTRFIC*IMACVKTVNSSVVVNGEP 181
           RK++SPRCM+K++L KA DSVEW +LEQVMEG+ FP  F   +M CVKTVN ++VVNG+ 
Sbjct: 380 RKNVSPRCMLKIDLHKAYDSVEWPFLEQVMEGLGFPDLFTKWVMKCVKTVNYTIVVNGQN 439

Query: 182 TEPSDAAKGLRQGDPIFPFLFAIVMKYLSRLLNGLKIFKEYKYYPRCSKLGITHLNFVDD 361
           T+  DAAKGLRQGDP+ PFLFAI M+YLSRLL GLK  K +KY+P+ +KL +THL F DD
Sbjct: 440 TQRFDAAKGLRQGDPMSPFLFAIAMEYLSRLLKGLKEDKSFKYHPKYAKLDVTHLCFADD 499

Query: 362 LLLFTRGDATSITYIHQCFNQF 427
           LLLF+RGD  SI  + +CF +F
Sbjct: 500 LLLFSRGDLNSIKALQKCFTEF 521



 Score = 59.7 bits (143), Expect(3) = 2e-59
 Identities = 28/49 (57%), Positives = 38/49 (77%)
 Frame = +1

Query: 433 LQANMEKSLVYFGGLTREAK*IILRQLGYGQGELPFKYMGVPLATKKLS 579
           LQAN+ KS +Y GG+  E +  I++QLGY   ELPFKY+GVPL++KKL+
Sbjct: 527 LQANLNKSSIYCGGVQMEVRQQIIQQLGYTIEELPFKYLGVPLSSKKLN 575



 Score = 30.4 bits (67), Expect(3) = 2e-59
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +3

Query: 576 IQWQPLVEKMVDRITSW 626
           IQW PL+EK++ RI SW
Sbjct: 577 IQWYPLIEKVMARINSW 593


>emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1114

 Score =  168 bits (426), Expect(2) = 1e-48
 Identities = 77/142 (54%), Positives = 109/142 (76%)
 Frame = +2

Query: 2    RKHISPRCMIKVNLKKASDSVEWVYLEQVMEGIDFPTRFIC*IMACVKTVNSSVVVNGEP 181
            R+H+SPRC+IKV+++KA DSVEWV+LE +++ + FP+ FI  IMACVKTV+ S+++NG P
Sbjct: 575  RRHVSPRCVIKVDIRKAYDSVEWVFLESMLKELGFPSMFIRWIMACVKTVSYSILLNGIP 634

Query: 182  TEPSDAAKGLRQGDPIFPFLFAIVMKYLSRLLNGLKIFKEYKYYPRCSKLGITHLNFVDD 361
            + P DA KGLRQGDP+ PFLFA+ M+YLSR +  +    E+ ++P+C ++ +THL F DD
Sbjct: 635  SIPFDAQKGLRQGDPLSPFLFALSMEYLSRCMGNMCKDPEFNFHPKCERIKLTHLMFADD 694

Query: 362  LLLFTRGDATSITYIHQCFNQF 427
            LL+F R DA+SI+ I   FN F
Sbjct: 695  LLMFARADASSISKIMAAFNSF 716



 Score = 51.2 bits (121), Expect(2) = 1e-48
 Identities = 24/49 (48%), Positives = 35/49 (71%)
 Frame = +1

Query: 433 LQANMEKSLVYFGGLTREAK*IILRQLGYGQGELPFKYMGVPLATKKLS 579
           LQA++EKS +YFGG+  E    +  ++    G LPF+Y+GVPLA+KKL+
Sbjct: 722 LQASIEKSCIYFGGVCHEEAEQLADRIQMPIGSLPFRYLGVPLASKKLN 770


>ref|XP_004239600.1| PREDICTED: uncharacterized protein LOC101264629 [Solanum
           lycopersicum]
          Length = 261

 Score =  137 bits (346), Expect(2) = 1e-40
 Identities = 66/116 (56%), Positives = 83/116 (71%)
 Frame = +2

Query: 98  IDFPTRFIC*IMACVKTVNSSVVVNGEPTEPSDAAKGLRQGDPIFPFLFAIVMKYLSRLL 277
           +  P  F+  +  CVK VN S+V NG+ ++  DAAKGLRQGDP+ PFLFAI MKYLSRLL
Sbjct: 102 VRLPEMFVQWLTKCVKIVNYSIVFNGQTSQSFDAAKGLRQGDPMSPFLFAIAMKYLSRLL 161

Query: 278 NGLKIFKEYKYYPRCSKLGITHLNFVDDLLLFTRGDATSITYIHQCFNQFLSCKQI 445
            GLK  K+++Y+PRCSKL ITHL F DDLL+F RGD  S+  I  CF+QF    ++
Sbjct: 162 KGLKEDKQFRYHPRCSKLDITHLCFADDLLMFARGDLKSVKAIQLCFSQFSQASRL 217



 Score = 55.1 bits (131), Expect(2) = 1e-40
 Identities = 25/42 (59%), Positives = 32/42 (76%)
 Frame = +1

Query: 433 LQANMEKSLVYFGGLTREAK*IILRQLGYGQGELPFKYMGVP 558
           LQAN+ KS +Y GG+ +E K  I++QLGY   ELPFKY+GVP
Sbjct: 217 LQANLSKSSIYCGGVQQEVKNQIVQQLGYNMEELPFKYLGVP 258


>emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1110

 Score =  165 bits (418), Expect = 9e-39
 Identities = 81/164 (49%), Positives = 112/164 (68%)
 Frame = +2

Query: 2    RKHISPRCMIKVNLKKASDSVEWVYLEQVMEGIDFPTRFIC*IMACVKTVNSSVVVNGEP 181
            RKH+SPRC++KV+++KA DSVEW +LE ++    FP+RF+  IM CV TV+ SV+VNG P
Sbjct: 572  RKHMSPRCIMKVDIRKAYDSVEWSFLETLLYEFGFPSRFVGWIMECVSTVSYSVLVNGIP 631

Query: 182  TEPSDAAKGLRQGDPIFPFLFAIVMKYLSRLLNGLKIFKEYKYYPRCSKLGITHLNFVDD 361
            T+P  A KGLRQGDP+ PFLFA+ M+YLSR L  LK   ++ ++P+C +L ITHL F DD
Sbjct: 632  TQPFQARKGLRQGDPMSPFLFALCMEYLSRCLEELKGSPDFNFHPKCERLNITHLMFADD 691

Query: 362  LLLFTRGDATSITYIHQCFNQFLSCKQIWKKV*CTLVGSHERLN 493
            LL+F R D +S+ +++  F +F             L  SHE+ N
Sbjct: 692  LLMFCRADKSSLDHMNVAFQKFSHAS--------GLAASHEKSN 727


>ref|YP_004222309.1| hypothetical protein BevumaM_p074 [Beta vulgaris subsp. maritima]
           gi|346683183|ref|YP_004842114.1| hypothetical protein
           BemaM_p069 [Beta macrocarpa]
           gi|319439824|emb|CBX33299.1| hypothetical protein [Beta
           vulgaris subsp. maritima] gi|345500101|emb|CBX24919.1|
           hypothetical protein [Beta macrocarpa]
          Length = 238

 Score =  158 bits (399), Expect = 1e-36
 Identities = 74/143 (51%), Positives = 103/143 (72%)
 Frame = +2

Query: 2   RKHISPRCMIKVNLKKASDSVEWVYLEQVMEGIDFPTRFIC*IMACVKTVNSSVVVNGEP 181
           +K +SPRCMIKV+L+KA DS+EW +L+ ++  + FP++FI  IM CV TV+ S+++NG+P
Sbjct: 38  QKAVSPRCMIKVDLRKAYDSIEWSFLQCMLSELGFPSQFITWIMECVTTVSYSILLNGKP 97

Query: 182 TEPSDAAKGLRQGDPIFPFLFAIVMKYLSRLLNGLKIFKEYKYYPRCSKLGITHLNFVDD 361
           T P  + KG+RQGDP+ PFLFAI M+YLSR L  L +   + Y+PRC KL ITH+ F  D
Sbjct: 98  TTPFPSKKGVRQGDPMSPFLFAIGMEYLSRCLLELTLNPNFNYHPRCEKLAITHMMFASD 157

Query: 362 LLLFTRGDATSITYIHQCFNQFL 430
           LLLF+R D  S+  ++Q F   L
Sbjct: 158 LLLFSRADTRSVILLYQAFQSSL 180


>ref|XP_006584238.1| PREDICTED: uncharacterized protein LOC102664824 [Glycine max]
          Length = 939

 Score =  131 bits (329), Expect(2) = 1e-34
 Identities = 63/143 (44%), Positives = 95/143 (66%)
 Frame = +2

Query: 2   RKHISPRCMIKVNLKKASDSVEWVYLEQVMEGIDFPTRFIC*IMACVKTVNSSVVVNGEP 181
           RKH +P+CM++++++KA D+V W  LE ++  + FP +FI  IM  V++V     +NG  
Sbjct: 400 RKHGTPKCMLQIDIQKAYDTVHWDALEHILRELGFPDQFIKWIMIAVRSVTYVFNINGRF 459

Query: 182 TEPSDAAKGLRQGDPIFPFLFAIVMKYLSRLLNGLKIFKEYKYYPRCSKLGITHLNFVDD 361
           T   +A +G+RQGDPI P LF +VM+YL+R+L+ L     + Y+ +C K+ IT+L F DD
Sbjct: 460 TRRLEARRGIRQGDPISPLLFILVMEYLNRILSQLDKIPNFNYHSKCEKMKITNLCFADD 519

Query: 362 LLLFTRGDATSITYIHQCFNQFL 430
           LLLF+RGD  S+  +   FN FL
Sbjct: 520 LLLFSRGDIGSVQIMLDKFNTFL 542



 Score = 41.6 bits (96), Expect(2) = 1e-34
 Identities = 18/49 (36%), Positives = 31/49 (63%)
 Frame = +1

Query: 433 LQANMEKSLVYFGGLTREAK*IILRQLGYGQGELPFKYMGVPLATKKLS 579
           L  N  K  +Y G +    K  +L   G+ +G++PF+Y+G+PL++KKL+
Sbjct: 547 LHVNPSKCNIYCGSVDINVKEQLLLISGFKEGKMPFRYLGIPLSSKKLN 595


>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1216

 Score =  119 bits (298), Expect(2) = 2e-31
 Identities = 60/139 (43%), Positives = 87/139 (62%)
 Frame = +2

Query: 11  ISPRCMIKVNLKKASDSVEWVYLEQVMEGIDFPTRFIC*IMACVKTVNSSVVVNGEPTEP 190
           IS RC +K+++ KA DS++W +L  V+  ++FP  FI  I  C+ T + S+ VNGE    
Sbjct: 311 ISTRCAMKIDISKAFDSLQWSFLTHVLAAMNFPGEFIHWISLCMSTASFSIQVNGELAGY 370

Query: 191 SDAAKGLRQGDPIFPFLFAIVMKYLSRLLNGLKIFKEYKYYPRCSKLGITHLNFVDDLLL 370
             +A+GLRQG  + P+LF I M  LSR+L+     +E+ Y+PRC  LG+THL F DDL++
Sbjct: 371 FRSARGLRQGCSLSPYLFVISMDVLSRMLDKAAGAREFGYHPRCKTLGLTHLCFADDLMI 430

Query: 371 FTRGDATSITYIHQCFNQF 427
            T G   S+  I +  NQF
Sbjct: 431 LTDGKIRSVDGIVKVLNQF 449



 Score = 43.1 bits (100), Expect(2) = 2e-31
 Identities = 17/52 (32%), Positives = 35/52 (67%)
 Frame = +1

Query: 433 LQANMEKSLVYFGGLTREAK*IILRQLGYGQGELPFKYMGVPLATKKLSNGN 588
           L+  MEK+ +Y  G++  ++ ++  +  +G G+LP +Y+G+PL TK+L+  +
Sbjct: 455 LKICMEKTTLYLAGVSDHSRQLMSSRYSFGVGKLPVRYLGLPLVTKRLTTSD 506


>emb|CAB10226.1| reverse transcriptase like protein [Arabidopsis thaliana]
           gi|7268153|emb|CAB78489.1| reverse transcriptase like
           protein [Arabidopsis thaliana]
          Length = 318

 Score =  123 bits (309), Expect(2) = 2e-31
 Identities = 62/147 (42%), Positives = 95/147 (64%), Gaps = 2/147 (1%)
 Frame = +2

Query: 11  ISPRCMIKVNLKKASDSVEWVYLEQVMEGIDFPTRFIC*IMACVKTVNSSVVVNGEPTEP 190
           +S RC IK+++ KA DSV+W +L+ V+  +DFP  F+  IM CV T + SV VNGE    
Sbjct: 26  VSERCAIKIDISKAFDSVQWTFLKNVLLTLDFPQVFVHWIMLCVTTASFSVQVNGELAGY 85

Query: 191 SDAAKGLRQGDPIFPFLFAIVMKYLSRLLNGLKIFKEYKYYPRCSKLGITHLNFVDDLLL 370
            ++++GLRQG  + P+LF IVM  LS+ L+     +++ Y+P+C  LG+THL+F DD+++
Sbjct: 86  FNSSRGLRQGCSLSPYLFVIVMDVLSKKLDRAAGLRKFGYHPKCKNLGLTHLSFADDIMV 145

Query: 371 FTRGDATSITYIHQCFNQFL--SCKQI 445
            T G   S+  I + F+ F   SC +I
Sbjct: 146 LTDGKLRSLEGIVEVFDSFAKQSCLKI 172



 Score = 38.9 bits (89), Expect(2) = 2e-31
 Identities = 17/50 (34%), Positives = 31/50 (62%)
 Frame = +1

Query: 433 LQANMEKSLVYFGGLTREAK*IILRQLGYGQGELPFKYMGVPLATKKLSN 582
           L+ +MEK+ +Y  G++   +     Q  +  G LP +Y+G+PL TK+L++
Sbjct: 170 LKISMEKTTIYLAGISDTVRQEFEEQFHFEVGCLPVRYLGLPLVTKRLTS 219


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 1223

 Score =  114 bits (286), Expect(2) = 6e-31
 Identities = 57/139 (41%), Positives = 86/139 (61%)
 Frame = +2

Query: 11   ISPRCMIKVNLKKASDSVEWVYLEQVMEGIDFPTRFIC*IMACVKTVNSSVVVNGEPTEP 190
            IS RC IK+++ KA DSV+W +L  V   + FP  FI  I  C+ T + SV VNGE    
Sbjct: 590  ISTRCAIKIDISKAFDSVQWPFLINVFTILGFPREFIHWINICITTASFSVQVNGELAGY 649

Query: 191  SDAAKGLRQGDPIFPFLFAIVMKYLSRLLNGLKIFKEYKYYPRCSKLGITHLNFVDDLLL 370
              +++GLRQG  + P+LF I M  LS++L+     + + Y+P+C  +G+THL+F DDL++
Sbjct: 650  FQSSRGLRQGCALSPYLFVICMDVLSKMLDKAAAARHFGYHPKCKTMGLTHLSFADDLMV 709

Query: 371  FTRGDATSITYIHQCFNQF 427
             + G   SI  I + F++F
Sbjct: 710  LSDGKIRSIERIIKVFDEF 728



 Score = 45.8 bits (107), Expect(2) = 6e-31
 Identities = 20/49 (40%), Positives = 33/49 (67%)
 Frame = +1

Query: 433 LQANMEKSLVYFGGLTREAK*IILRQLGYGQGELPFKYMGVPLATKKLS 579
           L+ ++EKS VY  GL+  A+  +  +  +  G+LP +Y+G+PL TK+LS
Sbjct: 734 LRISLEKSTVYLAGLSATARNEVADRFPFSSGQLPVRYLGLPLITKRLS 782


>gb|ABD33261.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 402

 Score =  139 bits (350), Expect = 7e-31
 Identities = 64/147 (43%), Positives = 101/147 (68%)
 Frame = +2

Query: 2   RKHISPRCMIKVNLKKASDSVEWVYLEQVMEGIDFPTRFIC*IMACVKTVNSSVVVNGEP 181
           RK ISPRCM+K++L+KA +SVEW +++ +M  + F  +F+  +M C+ T + +  +NG+ 
Sbjct: 255 RKGISPRCMVKIDLQKAYNSVEWPFIKHLMLELGFSYKFVNWVMGCLTTASYTFNINGDL 314

Query: 182 TEPSDAAKGLRQGDPIFPFLFAIVMKYLSRLLNGLKIFKEYKYYPRCSKLGITHLNFVDD 361
           T P  A KGLRQGDPI P+LF I M+YL+  L  L+    ++++PRC +L + H+ FVDD
Sbjct: 315 TRPFAAKKGLRQGDPISPYLFVICMEYLNICLIQLRKNAAFRFHPRCKRLNLIHVCFVDD 374

Query: 362 LLLFTRGDATSITYIHQCFNQFLSCKQ 442
           LLLF+RGD  S++ + + F+ F +  +
Sbjct: 375 LLLFSRGDVDSVSQLFEAFSLFSAASE 401


>emb|CAB72467.1| putative protein [Arabidopsis thaliana]
          Length = 762

 Score =  115 bits (288), Expect(3) = 2e-30
 Identities = 59/139 (42%), Positives = 85/139 (61%)
 Frame = +2

Query: 11  ISPRCMIKVNLKKASDSVEWVYLEQVMEGIDFPTRFIC*IMACVKTVNSSVVVNGEPTEP 190
           IS RC IK+++ KASDSV+W +L   +  + FP  FI  I  C+ T + SV VNGE    
Sbjct: 143 ISERCAIKIDISKASDSVQWSFLINTLTAMHFPEMFIHWIRLCITTPSFSVQVNGELAGF 202

Query: 191 SDAAKGLRQGDPIFPFLFAIVMKYLSRLLNGLKIFKEYKYYPRCSKLGITHLNFVDDLLL 370
             +++GLRQG  + P+LF I M  LS+LL+ +       Y+P C ++G+THL+F DDL++
Sbjct: 203 FQSSRGLRQGCALSPYLFVICMDVLSKLLDKVVGIGRIGYHPHCKRMGLTHLSFADDLMI 262

Query: 371 FTRGDATSITYIHQCFNQF 427
            T G   SI  I + F+ F
Sbjct: 263 LTDGQCRSIEGIIEVFDLF 281



 Score = 42.7 bits (99), Expect(3) = 2e-30
 Identities = 19/50 (38%), Positives = 33/50 (66%)
 Frame = +1

Query: 433 LQANMEKSLVYFGGLTREAK*IILRQLGYGQGELPFKYMGVPLATKKLSN 582
           L+ +MEKS ++  GL+  ++  +     +  GELP +Y+G+PL TK+LS+
Sbjct: 287 LKISMEKSTIFSAGLSSTSRAQLHTHFPFEVGELPIRYLGLPLVTKRLSS 336



 Score = 21.2 bits (43), Expect(3) = 2e-30
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +3

Query: 576 IQWQPLVEKMVDRITSW 626
           + + PL+E++  RI SW
Sbjct: 337 VDYAPLIEQIRKRIGSW 353


>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1529

 Score =  116 bits (290), Expect(2) = 2e-30
 Identities = 54/142 (38%), Positives = 86/142 (60%)
 Frame = +2

Query: 2    RKHISPRCMIKVNLKKASDSVEWVYLEQVMEGIDFPTRFIC*IMACVKTVNSSVVVNGEP 181
            ++ ++PRC +K+++ KA DSV+W +L   +E ++FP  F   I  C+ T   SV VNGE 
Sbjct: 884  KESVTPRCAMKIDISKAFDSVQWQFLLNTLEALNFPETFRHWIKLCISTATFSVQVNGEL 943

Query: 182  TEPSDAAKGLRQGDPIFPFLFAIVMKYLSRLLNGLKIFKEYKYYPRCSKLGITHLNFVDD 361
                 +++GLRQG  + P+LF I M  LS +++   + +   Y+P+C K+G+THL F DD
Sbjct: 944  AGFFGSSRGLRQGCALSPYLFVICMNVLSHMIDEAAVHRNIGYHPKCEKIGLTHLCFADD 1003

Query: 362  LLLFTRGDATSITYIHQCFNQF 427
            L++F  G   SI  +   F +F
Sbjct: 1004 LMVFVDGHQWSIEGVINVFKEF 1025



 Score = 42.4 bits (98), Expect(2) = 2e-30
 Identities = 17/52 (32%), Positives = 32/52 (61%)
 Frame = +1

Query: 433  LQANMEKSLVYFGGLTREAK*IILRQLGYGQGELPFKYMGVPLATKKLSNGN 588
            LQ ++EKS +Y  G++   +   L    +  G+LP +Y+G+PL TK+++  +
Sbjct: 1031 LQISLEKSTIYLAGVSASDRVQTLSSFPFANGQLPVRYLGLPLLTKQMTTAD 1082


>gb|AAF87143.1|AC002423_8 T23E23.16 [Arabidopsis thaliana]
          Length = 653

 Score =  114 bits (286), Expect(2) = 2e-30
 Identities = 55/142 (38%), Positives = 89/142 (62%)
 Frame = +2

Query: 2   RKHISPRCMIKVNLKKASDSVEWVYLEQVMEGIDFPTRFIC*IMACVKTVNSSVVVNGEP 181
           ++ +S RC IK+++ KA +SV+W ++  ++  +DFP  F+  IM C+ T + SV VNGE 
Sbjct: 114 KESVSSRCAIKIDISKAFNSVQWSFIRNILLSMDFPMEFVHWIMLCISTASFSVQVNGEL 173

Query: 182 TEPSDAAKGLRQGDPIFPFLFAIVMKYLSRLLNGLKIFKEYKYYPRCSKLGITHLNFVDD 361
                + +GLRQG  + P+LF + M  LS+LL+     K++ Y+ RC +L +THL+F DD
Sbjct: 174 VGFFQSKRGLRQGCSLSPYLFVMSMDVLSKLLDQAASAKKFGYHSRCKELSLTHLSFADD 233

Query: 362 LLLFTRGDATSITYIHQCFNQF 427
           L++ + G   SI  I + F+ F
Sbjct: 234 LMVLSDGKVRSIDGIVEVFDIF 255



 Score = 43.9 bits (102), Expect(2) = 2e-30
 Identities = 19/49 (38%), Positives = 32/49 (65%)
 Frame = +1

Query: 433 LQANMEKSLVYFGGLTREAK*IILRQLGYGQGELPFKYMGVPLATKKLS 579
           L+ +MEKS +Y  G+T +    I  +  +  G+LP +Y+G+PL TK+L+
Sbjct: 261 LKISMEKSTIYLAGVTEDVYHEIQNRYQFDVGQLPVRYLGLPLVTKRLT 309


>gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]
          Length = 740

 Score =  115 bits (288), Expect(3) = 1e-29
 Identities = 55/139 (39%), Positives = 82/139 (58%)
 Frame = +2

Query: 11  ISPRCMIKVNLKKASDSVEWVYLEQVMEGIDFPTRFIC*IMACVKTVNSSVVVNGEPTEP 190
           ISPRC +K+++ KA DSV+W +L   +E ++FP  F   I  C+ T   SV VNGE    
Sbjct: 163 ISPRCAMKIDISKAFDSVQWQFLLNTLEALNFPENFCHWIKLCISTATFSVQVNGELAGF 222

Query: 191 SDAAKGLRQGDPIFPFLFAIVMKYLSRLLNGLKIFKEYKYYPRCSKLGITHLNFVDDLLL 370
             + +GLRQG  + P+LF I M  LS +++   + +   Y+P+C KL +THL F DDL++
Sbjct: 223 FGSKRGLRQGCALSPYLFVICMNVLSHMIDVAAVHRNIGYHPKCKKLSLTHLCFADDLMV 282

Query: 371 FTRGDATSITYIHQCFNQF 427
           F  G   S+  +   F +F
Sbjct: 283 FIDGQQRSVEGVINIFKEF 301



 Score = 40.4 bits (93), Expect(3) = 1e-29
 Identities = 17/52 (32%), Positives = 32/52 (61%)
 Frame = +1

Query: 433 LQANMEKSLVYFGGLTREAK*IILRQLGYGQGELPFKYMGVPLATKKLSNGN 588
           L  ++EKS +Y  G++   +  IL    +  G+LP +Y+G+PL TK+++  +
Sbjct: 307 LHISLEKSTLYLAGVSELNRNNILSAFPFASGQLPVRYLGLPLLTKQMTTAD 358



 Score = 20.4 bits (41), Expect(3) = 1e-29
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = +3

Query: 582 WQPLVEKMVDRITSW 626
           + PL++K+  +I+SW
Sbjct: 359 YSPLLDKVRSKISSW 373


>gb|AAD22330.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 631

 Score =  114 bits (284), Expect(2) = 2e-29
 Identities = 56/139 (40%), Positives = 83/139 (59%)
 Frame = +2

Query: 11  ISPRCMIKVNLKKASDSVEWVYLEQVMEGIDFPTRFIC*IMACVKTVNSSVVVNGEPTEP 190
           ISPRC +K+++ KA DSV+W +L   +E ++FP +    I  C+ T   SV VNGE    
Sbjct: 160 ISPRCAMKIDISKAFDSVQWQFLLNTLEALNFPEKIRHWIKLCISTATFSVQVNGELAGF 219

Query: 191 SDAAKGLRQGDPIFPFLFAIVMKYLSRLLNGLKIFKEYKYYPRCSKLGITHLNFVDDLLL 370
               +GLRQG  + P+LF I M  LS +++   + +   Y+P+C KL +THL FVDDL++
Sbjct: 220 FGNKRGLRQGCALSPYLFVICMNVLSHMIDEAAVRRNIGYHPKCKKLSLTHLCFVDDLMV 279

Query: 371 FTRGDATSITYIHQCFNQF 427
           F  G   SI  +   F++F
Sbjct: 280 FIDGQQRSIEGVINIFHEF 298



 Score = 42.0 bits (97), Expect(2) = 2e-29
 Identities = 17/52 (32%), Positives = 32/52 (61%)
 Frame = +1

Query: 433 LQANMEKSLVYFGGLTREAK*IILRQLGYGQGELPFKYMGVPLATKKLSNGN 588
           L  ++EKS +Y  G++   +  IL    +  G+LP +Y+G+PL TK+++  +
Sbjct: 304 LHISLEKSTLYLAGVSEPNRDHILSAFSFASGQLPVRYLGLPLMTKQMTTAD 355


>emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thaliana]
           gi|7267919|emb|CAB78261.1| putative reverse
           transcriptase [Arabidopsis thaliana]
          Length = 662

 Score =  119 bits (297), Expect(2) = 4e-29
 Identities = 58/139 (41%), Positives = 88/139 (63%)
 Frame = +2

Query: 11  ISPRCMIKVNLKKASDSVEWVYLEQVMEGIDFPTRFIC*IMACVKTVNSSVVVNGEPTEP 190
           +S RC IK+++ KA DSV+W +L  V+  +DFP  F+  IM CV T + SV VN E    
Sbjct: 108 VSERCAIKIDISKAFDSVQWSFLRNVLLTLDFPQEFVHWIMLCVTTASFSVQVNRELAGY 167

Query: 191 SDAAKGLRQGDPIFPFLFAIVMKYLSRLLNGLKIFKEYKYYPRCSKLGITHLNFVDDLLL 370
            ++ +GLRQG  + P+LF IVM  LS+ L+     +++ Y+P+C  LG+THL+F DD+++
Sbjct: 168 FNSLRGLRQGCSLTPYLFVIVMDVLSKKLDRAAGLRKFGYHPKCKNLGLTHLSFADDIMV 227

Query: 371 FTRGDATSITYIHQCFNQF 427
            T G   S+  I + F+ F
Sbjct: 228 LTDGKLRSLEGIVEVFDSF 246



 Score = 35.4 bits (80), Expect(2) = 4e-29
 Identities = 15/50 (30%), Positives = 29/50 (58%)
 Frame = +1

Query: 433 LQANMEKSLVYFGGLTREAK*IILRQLGYGQGELPFKYMGVPLATKKLSN 582
           L+ +M K+ +YF G+++        Q  +  G LP +Y+ +PL TK+ ++
Sbjct: 252 LKISMAKTTIYFAGISKSVCKEFEDQFHFAVGRLPVRYLCLPLVTKRFTS 301


>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1352

 Score =  103 bits (258), Expect(3) = 5e-29
 Identities = 55/152 (36%), Positives = 88/152 (57%)
 Frame = +2

Query: 2    RKHISPRCMIKVNLKKASDSVEWVYLEQVMEGIDFPTRFIC*IMACVKTVNSSVVVNGEP 181
            ++ IS R  +K+++ KA D V+W +L  V++ I  P  FI  I  C+ T + SV VNGE 
Sbjct: 734  KESISSRSALKIDISKAFDFVQWPFLINVLKAIHLPEMFIHWIELCIGTASFSVQVNGEL 793

Query: 182  TEPSDAAKGLRQGDPIFPFLFAIVMKYLSRLLNGLKIFKEYKYYPRCSKLGITHLNFVDD 361
            +    + +GLRQG  + P+L+ I M  LS +L+   + K+  Y+PRC  + +THL F DD
Sbjct: 794  SGFFRSERGLRQGCSLSPYLYVICMNVLSCMLDKAAVEKKISYHPRCRNMNLTHLCFADD 853

Query: 362  LLLFTRGDATSITYIHQCFNQFLSCKQIWKKV 457
            +++F+ G + SI      F +F +    W K+
Sbjct: 854  IMVFSDGTSKSIQGTLAIFEKFAAMS--WLKI 883



 Score = 46.6 bits (109), Expect(3) = 5e-29
 Identities = 20/52 (38%), Positives = 35/52 (67%)
 Frame = +1

Query: 433  LQANMEKSLVYFGGLTREAK*IILRQLGYGQGELPFKYMGVPLATKKLSNGN 588
            L+ ++EKS ++  G++  AK  IL+Q  +  G LP KY+G+PL TK+++  +
Sbjct: 881  LKISLEKSTIFMAGISPNAKTSILQQFPFELGTLPVKYLGLPLLTKRMTQSD 932



 Score = 23.9 bits (50), Expect(3) = 5e-29
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +3

Query: 588 PLVEKMVDRITSW 626
           PLVEK+  RITSW
Sbjct: 935 PLVEKIRARITSW 947


>gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]
          Length = 872

 Score =  112 bits (279), Expect(2) = 2e-28
 Identities = 56/144 (38%), Positives = 90/144 (62%)
 Frame = +2

Query: 11  ISPRCMIKVNLKKASDSVEWVYLEQVMEGIDFPTRFIC*IMACVKTVNSSVVVNGEPTEP 190
           IS RC IK+++ KA DSV+W +L   +  ++F   FI  I  C+ T + SV VNG+    
Sbjct: 237 ISARCAIKIDISKAFDSVQWSFLTNTLVAMNFSPTFIHWINLCITTASFSVQVNGDLVGY 296

Query: 191 SDAAKGLRQGDPIFPFLFAIVMKYLSRLLNGLKIFKEYKYYPRCSKLGITHLNFVDDLLL 370
             + +GLRQG  + P+LF I M  LS++L+     +++ ++P+C +LG+THL+F DDL++
Sbjct: 297 FQSKRGLRQGCSLSPYLFVICMDVLSKMLDKAAGVRKFGFHPKCQRLGLTHLSFADDLMV 356

Query: 371 FTRGDATSITYIHQCFNQFLSCKQ 442
            + G   SI  I + F++F  CK+
Sbjct: 357 LSDGKTRSIEGILEVFDEF--CKR 378



 Score = 40.4 bits (93), Expect(2) = 2e-28
 Identities = 18/52 (34%), Positives = 34/52 (65%)
 Frame = +1

Query: 433 LQANMEKSLVYFGGLTREAK*IILRQLGYGQGELPFKYMGVPLATKKLSNGN 588
           L+ ++EKS +Y  G++   K  I  +  +  G+LP +Y+G+PL TK+L++ +
Sbjct: 381 LRISLEKSTLYMAGVSPIIKQEIAAKFLFDVGQLPVRYLGLPLVTKRLTSAD 432


>gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thaliana]
          Length = 629

 Score =  103 bits (258), Expect(2) = 3e-28
 Identities = 51/133 (38%), Positives = 81/133 (60%)
 Frame = +2

Query: 29  IKVNLKKASDSVEWVYLEQVMEGIDFPTRFIC*IMACVKTVNSSVVVNGEPTEPSDAAKG 208
           +K+++ KA DS++W +L   +  ++FP  FI  I  C+ T + SV VNGE      +A+G
Sbjct: 1   MKIDISKAFDSLQWSFLINALSAMNFPGEFIHWISRCITTTSFSVQVNGELAGYFRSARG 60

Query: 209 LRQGDPIFPFLFAIVMKYLSRLLNGLKIFKEYKYYPRCSKLGITHLNFVDDLLLFTRGDA 388
           +RQG  + P+LF I M+ LS++L+     K + ++P+C  LG+THL F DDL++ T G  
Sbjct: 61  IRQGCALSPYLFVISMEVLSKMLDQAAGGKRFGFHPKCKNLGLTHLCFADDLMILTDGKV 120

Query: 389 TSITYIHQCFNQF 427
            S+  I +  N F
Sbjct: 121 RSVDGIVEVMNLF 133



 Score = 47.8 bits (112), Expect(2) = 3e-28
 Identities = 20/53 (37%), Positives = 37/53 (69%)
 Frame = +1

Query: 433 LQANMEKSLVYFGGLTREAK*IILRQLGYGQGELPFKYMGVPLATKKLSNGNL 591
           LQ NMEK+ +Y  G++   + +++ +  +G G+LP +Y+G+PL TK+L+  +L
Sbjct: 139 LQINMEKTTLYTAGVSDHNRYMMISRYPFGLGQLPVRYLGLPLVTKRLTKEDL 191


>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
           72.31) [Arabidopsis thaliana]
          Length = 928

 Score =  110 bits (276), Expect(2) = 4e-28
 Identities = 54/139 (38%), Positives = 86/139 (61%)
 Frame = +2

Query: 11  ISPRCMIKVNLKKASDSVEWVYLEQVMEGIDFPTRFIC*IMACVKTVNSSVVVNGEPTEP 190
           +S RC +K+++ KA DSV+W +L  V+E ++FP  F   I  C+ T + SV VNGE    
Sbjct: 478 VSSRCALKIDISKAFDSVQWKFLINVLEAMNFPPEFTHWITLCITTASFSVQVNGELAGV 537

Query: 191 SDAAKGLRQGDPIFPFLFAIVMKYLSRLLNGLKIFKEYKYYPRCSKLGITHLNFVDDLLL 370
             +A+ LRQG  + P+LF I M  LS++L+     +++ Y+P+C  +G+THL+F DDL++
Sbjct: 538 FSSARELRQGCSLSPYLFVISMDVLSKMLDKAVGARQFGYHPKCRAIGLTHLSFADDLMI 597

Query: 371 FTRGDATSITYIHQCFNQF 427
            + G   SI  I +   +F
Sbjct: 598 LSDGKVRSIDGIVKVLYEF 616



 Score = 40.4 bits (93), Expect(2) = 4e-28
 Identities = 17/49 (34%), Positives = 32/49 (65%)
 Frame = +1

Query: 433 LQANMEKSLVYFGGLTREAK*IILRQLGYGQGELPFKYMGVPLATKKLS 579
           L+ +MEKS +Y  G+       I+++  +  G+LP +Y+G+PL +K+L+
Sbjct: 622 LKISMEKSTMYLAGVQASVYQEIVQKFSFDVGKLPVRYLGLPLVSKRLT 670