BLASTX nr result
ID: Atropa21_contig00035945
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Atropa21_contig00035945
(1046 letters)
Database: nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006337991.1| PREDICTED: putative ribonuclease H protein A... 62 1e-18
ref|XP_006347119.1| PREDICTED: putative ribonuclease H protein A... 62 1e-18
ref|XP_006362709.1| PREDICTED: putative ribonuclease H protein A... 61 1e-18
ref|XP_006355601.1| PREDICTED: putative ribonuclease H protein A... 60 8e-18
ref|XP_006352964.1| PREDICTED: putative ribonuclease H protein A... 60 8e-18
ref|XP_006345710.1| PREDICTED: putative ribonuclease H protein A... 57 2e-13
ref|XP_006354966.1| PREDICTED: putative ribonuclease H protein A... 56 2e-13
ref|XP_006353602.1| PREDICTED: putative ribonuclease H protein A... 56 2e-13
ref|XP_006345709.1| PREDICTED: putative ribonuclease H protein A... 57 3e-13
ref|XP_006352585.1| PREDICTED: uncharacterized protein LOC102588... 57 7e-12
ref|XP_006356960.1| PREDICTED: putative ribonuclease H protein A... 75 4e-11
ref|XP_006356729.1| PREDICTED: putative ribonuclease H protein A... 60 1e-08
gb|AAT40556.2| hypothetical protein SDM1_4t00019 [Solanum demissum] 49 2e-07
ref|XP_006350483.1| PREDICTED: putative ribonuclease H protein A... 56 6e-07
>ref|XP_006337991.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
tuberosum]
Length = 556
Score = 62.4 bits (150), Expect(3) = 1e-18
Identities = 24/40 (60%), Positives = 30/40 (75%)
Frame = +1
Query: 523 WKLIWKSRTPHKVMCFSWIVANEACLTIDNLQRRGLNLCS 642
WK +WK R PHKV CF W++A EA LT DN+ +RG+ LCS
Sbjct: 394 WKQVWKCRIPHKVSCFIWLLAKEAALTQDNVMKRGITLCS 433
Score = 52.0 bits (123), Expect(3) = 1e-18
Identities = 27/64 (42%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +3
Query: 747 PGNTQDLLCCWYRQ-ELDKATNRWYVISACIWWVILKESNSGCFKERQKSVKSIN*DCIL 923
P + L W L K RW +I A IWW I KE NS CF+ + SV+ + +CIL
Sbjct: 473 PRRVTEALYSWEEAGALAKDRTRWRIIPASIWWAIWKERNSRCFEGIENSVQDVKLNCIL 532
Query: 924 LLHF 935
LL F
Sbjct: 533 LLCF 536
Score = 26.6 bits (57), Expect(3) = 1e-18
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 644 LCGSQT*TISHLFWYCPITDRP*ELFTQLCDIKRSW 751
LCG T++HLF +C T + +F L I SW
Sbjct: 437 LCGETLETVNHLFLHCKYTRQLWRIFLSLKGI--SW 470
>ref|XP_006347119.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
tuberosum]
Length = 450
Score = 62.4 bits (150), Expect(3) = 1e-18
Identities = 24/40 (60%), Positives = 30/40 (75%)
Frame = +1
Query: 523 WKLIWKSRTPHKVMCFSWIVANEACLTIDNLQRRGLNLCS 642
WK +WK R PHKV CF W++A EA LT DN+ +RG+ LCS
Sbjct: 288 WKQVWKCRIPHKVSCFIWLLAKEAALTQDNVMKRGITLCS 327
Score = 52.0 bits (123), Expect(3) = 1e-18
Identities = 27/64 (42%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +3
Query: 747 PGNTQDLLCCWYRQ-ELDKATNRWYVISACIWWVILKESNSGCFKERQKSVKSIN*DCIL 923
P + L W L K RW +I A IWW I KE NS CF+ + SV+ + +CIL
Sbjct: 367 PRRVTEALYSWEEAGALAKDRTRWRIIPASIWWAIWKERNSRCFEGIENSVQDVKLNCIL 426
Query: 924 LLHF 935
LL F
Sbjct: 427 LLCF 430
Score = 26.6 bits (57), Expect(3) = 1e-18
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 644 LCGSQT*TISHLFWYCPITDRP*ELFTQLCDIKRSW 751
LCG T++HLF +C T + +F L I SW
Sbjct: 331 LCGETLETVNHLFLHCKYTRQLWRIFLSLKGI--SW 364
>ref|XP_006362709.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
tuberosum]
Length = 217
Score = 60.8 bits (146), Expect(3) = 1e-18
Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Frame = +3
Query: 747 PGNTQDLLCCWYRQ-ELDKATNRWYVISACIWWVILKESNSGCFKERQKSVKSIN*DCIL 923
PG+ ++L CW R K RW ++ ACIWW I KE N CF+ +Q +++ I +C+
Sbjct: 134 PGSIIEVLQCWNRDGNAGKNEKRWRIVPACIWWTIWKERNQRCFEGKQNNIQKIKTNCLG 193
Query: 924 LLHFGVKR 947
L +F K+
Sbjct: 194 LYYFWCKQ 201
Score = 47.0 bits (110), Expect(3) = 1e-18
Identities = 21/55 (38%), Positives = 36/55 (65%), Gaps = 3/55 (5%)
Frame = +1
Query: 487 FEQRRTTSETMS---WKLIWKSRTPHKVMCFSWIVANEACLTIDNLQRRGLNLCS 642
+ + R+T E + W++IW++ P+KV F+W++A +A LT +NL +R NL S
Sbjct: 40 YRELRSTEEQHAGWPWRMIWRTEIPYKVNYFTWLLAKQAVLTHENLNKRKPNLRS 94
Score = 32.7 bits (73), Expect(3) = 1e-18
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = +2
Query: 644 LCGSQT*TISHLFWYCPITDRP*ELFTQLCDIKRSWEYTGSFV 772
LC Q T++HLF +C TD+ ++F Q IK W GS +
Sbjct: 98 LCEEQVETVNHLFLHCKWTDQLWQMFIQKRKIK--WTKPGSII 138
>ref|XP_006355601.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
tuberosum]
Length = 399
Score = 59.7 bits (143), Expect(3) = 8e-18
Identities = 23/40 (57%), Positives = 30/40 (75%)
Frame = +1
Query: 523 WKLIWKSRTPHKVMCFSWIVANEACLTIDNLQRRGLNLCS 642
W+ IWK R P+KV CF W++A EA LT DN+ +RG+ LCS
Sbjct: 237 WRQIWKGRIPYKVSCFIWLLAKEAALTQDNVMKRGITLCS 276
Score = 49.3 bits (116), Expect(3) = 8e-18
Identities = 22/48 (45%), Positives = 29/48 (60%)
Frame = +3
Query: 792 LDKATNRWYVISACIWWVILKESNSGCFKERQKSVKSIN*DCILLLHF 935
L K RW +I A IWW KE NS CF+ + S++ + +CILLL F
Sbjct: 332 LAKDRTRWRIIPASIWWATWKERNSRCFESVENSMQKVKLNCILLLCF 379
Score = 28.9 bits (63), Expect(3) = 8e-18
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 11/51 (21%)
Frame = +2
Query: 644 LCGSQT*TISHLFWYCPITDRP*ELFTQLCDIK-----------RSWEYTG 763
LCG + T++HLF +C T + +F L I +SWE G
Sbjct: 280 LCGETSETVNHLFLHCKFTQQLWRVFLSLKGISWAMPRRITEALKSWEEAG 330
>ref|XP_006352964.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
tuberosum]
Length = 323
Score = 59.7 bits (143), Expect(3) = 8e-18
Identities = 23/40 (57%), Positives = 30/40 (75%)
Frame = +1
Query: 523 WKLIWKSRTPHKVMCFSWIVANEACLTIDNLQRRGLNLCS 642
W+ IWK R P+KV CF W++A EA LT DN+ +RG+ LCS
Sbjct: 161 WRQIWKGRIPYKVSCFIWLLAKEAALTQDNVMKRGITLCS 200
Score = 49.3 bits (116), Expect(3) = 8e-18
Identities = 22/48 (45%), Positives = 29/48 (60%)
Frame = +3
Query: 792 LDKATNRWYVISACIWWVILKESNSGCFKERQKSVKSIN*DCILLLHF 935
L K RW +I A IWW KE NS CF+ + S++ + +CILLL F
Sbjct: 256 LAKDRTRWRIIPASIWWATWKERNSRCFESVENSMQKVKLNCILLLCF 303
Score = 28.9 bits (63), Expect(3) = 8e-18
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 11/51 (21%)
Frame = +2
Query: 644 LCGSQT*TISHLFWYCPITDRP*ELFTQLCDIK-----------RSWEYTG 763
LCG + T++HLF +C T + +F L I +SWE G
Sbjct: 204 LCGETSETVNHLFLHCKFTQQLWRVFLSLKGISWAMPRRITEALKSWEEAG 254
>ref|XP_006345710.1| PREDICTED: putative ribonuclease H protein At1g65750-like isoform
X2 [Solanum tuberosum]
Length = 284
Score = 56.6 bits (135), Expect(2) = 2e-13
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Frame = +3
Query: 747 PGNTQDLLCCWYRQELDKATNRWY-VISACIWWVILKESNSGCFKERQKSVKSIN*DCIL 923
P T ++L W R+ K+ RW+ +I +CIWW + KE NS CF R S+ + +CI+
Sbjct: 201 PERTSNVLKSWVRRGGTKSQKRWWRLIPSCIWWSVWKERNSRCFDNRSNSIHKVKWNCIV 260
Query: 924 LLHFGVKR 947
L F K+
Sbjct: 261 SLLFWCKQ 268
Score = 46.6 bits (109), Expect(2) = 2e-13
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Frame = +1
Query: 514 TMSWKLIWKSRTPHKVMCFSWIVANEACLTIDNLQRRGLNL---CSIMRQPNINHQSSFL 684
T W WK P KV CF+W+V ACLT + LQ++G L C + + + FL
Sbjct: 119 THFWNYFWKGDIPTKVKCFTWLVIKRACLTQEVLQKKGRQLVPRCFLCNLTSETNSHLFL 178
Query: 685 VLSY 696
+Y
Sbjct: 179 HCNY 182
>ref|XP_006354966.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
tuberosum]
Length = 397
Score = 56.2 bits (134), Expect(3) = 2e-13
Identities = 21/41 (51%), Positives = 31/41 (75%)
Frame = +1
Query: 517 MSWKLIWKSRTPHKVMCFSWIVANEACLTIDNLQRRGLNLC 639
+ WKLIWK + P+KV+ F+W+V EA LT +NL +RG+ +C
Sbjct: 233 LPWKLIWKVKIPYKVVVFTWLVVKEAVLTQENLMKRGIQMC 273
Score = 40.8 bits (94), Expect(3) = 2e-13
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Frame = +3
Query: 747 PGNTQDLLCCWYRQ---ELDKATNRWYVISACIWWVILKESNSGCFKERQKSVKSIN*DC 917
PG T L W + DK+ RW ++ A IWW I KE NS F + + I +C
Sbjct: 314 PGRTGQALESWNMEGSGSTDKS--RWKIVPAVIWWTIWKERNSRNFDNKSSPLHKIKMNC 371
Query: 918 IL 923
I+
Sbjct: 372 II 373
Score = 25.4 bits (54), Expect(3) = 2e-13
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +2
Query: 647 CGSQT*TISHLFWYCPITDRP*ELFTQLCDIKRSWEYTG 763
C TI+HLF +C + + LFT I SW G
Sbjct: 279 CEQVAETINHLFLHCKVVGKLWNLFTSFRGI--SWTVPG 315
>ref|XP_006353602.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
tuberosum]
Length = 517
Score = 56.2 bits (134), Expect(2) = 2e-13
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Frame = +3
Query: 747 PGNTQDLLCCWYRQELDKATNRWY-VISACIWWVILKESNSGCFKERQKSVKSIN*DCIL 923
P T ++L W R+ K+ RW+ +I +CIWW + KE N+ CF R S+ + +CI+
Sbjct: 434 PERTSNVLKSWVRRGSTKSQKRWWRLIPSCIWWSVWKERNNRCFDNRSNSIHKVKWNCIV 493
Query: 924 LLHFGVKR 947
L F K+
Sbjct: 494 SLLFWCKQ 501
Score = 46.6 bits (109), Expect(2) = 2e-13
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Frame = +1
Query: 514 TMSWKLIWKSRTPHKVMCFSWIVANEACLTIDNLQRRGLNL---CSIMRQPNINHQSSFL 684
T W WK P KV CF+W+V ACLT + LQ++G L C + + + FL
Sbjct: 352 THFWNYFWKGDIPTKVKCFTWLVIKRACLTQEVLQKKGRQLVPRCFLCNLTSETNSHLFL 411
Query: 685 VLSY 696
+Y
Sbjct: 412 HCNY 415
>ref|XP_006345709.1| PREDICTED: putative ribonuclease H protein At1g65750-like isoform
X1 [Solanum tuberosum]
Length = 284
Score = 56.6 bits (135), Expect(2) = 3e-13
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Frame = +3
Query: 747 PGNTQDLLCCWYRQELDKATNRWY-VISACIWWVILKESNSGCFKERQKSVKSIN*DCIL 923
P T ++L W R+ K+ RW+ +I +CIWW + KE NS CF R S+ + +CI+
Sbjct: 201 PERTSNVLKSWVRRGSTKSQKRWWRLIPSCIWWSVWKERNSRCFDNRSNSIHKVKWNCIV 260
Query: 924 LLHFGVKR 947
L F K+
Sbjct: 261 SLLFLCKQ 268
Score = 46.2 bits (108), Expect(2) = 3e-13
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = +1
Query: 523 WKLIWKSRTPHKVMCFSWIVANEACLTIDNLQRRGLNL---CSIMRQPNINHQSSFLVLS 693
W WK P KV CF+W+V ACLT + LQ++G L C + + + FL +
Sbjct: 122 WNYFWKGDIPTKVKCFTWLVIKRACLTQEVLQKKGRQLVPRCFLCNLTSETNSHLFLHCN 181
Query: 694 Y 696
Y
Sbjct: 182 Y 182
>ref|XP_006352585.1| PREDICTED: uncharacterized protein LOC102588593 [Solanum tuberosum]
Length = 255
Score = 57.4 bits (137), Expect(3) = 7e-12
Identities = 22/40 (55%), Positives = 30/40 (75%)
Frame = +1
Query: 523 WKLIWKSRTPHKVMCFSWIVANEACLTIDNLQRRGLNLCS 642
WKLIWK + PHKV F+W+ +ACLT + +QRRG+ +CS
Sbjct: 92 WKLIWKIKIPHKVSGFTWLAIRKACLTHEVIQRRGIQICS 131
Score = 38.1 bits (87), Expect(3) = 7e-12
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Frame = +3
Query: 747 PGNTQDLLCCWY---RQELDKATNRWYVISACIWWVILKESNSGCFKERQKSVKSIN*DC 917
P T +LL W R+ K + W I ACIWW + KE N + S + I +
Sbjct: 171 PKTTLELLRQWEGVGRRRRSKE-DWWKCIPACIWWTLWKERNERSHDGKLNSTQKIKMNS 229
Query: 918 ILLLHFGVKRNML 956
+ LL+F K++++
Sbjct: 230 LSLLYFWCKQDLV 242
Score = 21.9 bits (45), Expect(3) = 7e-12
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = +2
Query: 644 LCGSQT*TISHLFWYCPITDRP*ELFTQLCDIKRSW 751
+CG + SHLF +C +F LC + +W
Sbjct: 135 MCGEEAEVNSHLFLHCRTAANLWNMF--LCILGVNW 168
>ref|XP_006356960.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
tuberosum]
Length = 514
Score = 75.1 bits (183), Expect = 4e-11
Identities = 59/162 (36%), Positives = 78/162 (48%), Gaps = 4/162 (2%)
Frame = +1
Query: 472 NLLQDFEQRRTTSETMSWKLIWKSRTPHKVMCFSWIVANEACLTIDNLQRRGLNLCS--- 642
N L D EQ ++ WK IWK+R P KV+CF+W+V +ACLT D LQRRG +LCS
Sbjct: 371 NYLMDLEQ---FNDPWPWKEIWKARAPFKVVCFTWLVVWKACLTHDKLQRRGFHLCSRCF 427
Query: 643 IMRQPNINHQSSFLVLSYHRSAVRAIYSTLRHQKVLGIHRIFCVAGIGRSWTK-QQIGGT 819
+ Q + FL H S R ++ Q + +I +W K + GG
Sbjct: 428 LCHQEAETNGHLFL----HCSFTRQLW-----QLFAALAQI--------AWEKLVKSGGR 470
Query: 820 *FQLVSGG*F*KKVIPDALKRGKNQ*RVLTEIVFCYFILG*K 945
FQL G F K+ + D LK G Q R F + I G K
Sbjct: 471 LFQLAYSGQFGKRGMQDVLKAGAVQSRRSRTPAFLFSIFGVK 512
>ref|XP_006356729.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
tuberosum]
Length = 330
Score = 59.7 bits (143), Expect(2) = 1e-08
Identities = 23/40 (57%), Positives = 30/40 (75%)
Frame = +1
Query: 523 WKLIWKSRTPHKVMCFSWIVANEACLTIDNLQRRGLNLCS 642
W+ IWK R P+KV CF W++A EA LT DN+ +RG+ LCS
Sbjct: 255 WRQIWKGRIPYKVSCFIWLLAKEAALTQDNVMKRGITLCS 294
Score = 27.3 bits (59), Expect(2) = 1e-08
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 644 LCGSQT*TISHLFWYCPITDRP*ELFTQL 730
LCG + T++HLF +C T + +F L
Sbjct: 298 LCGETSETVNHLFLHCKFTQQLWRVFLSL 326
>gb|AAT40556.2| hypothetical protein SDM1_4t00019 [Solanum demissum]
Length = 570
Score = 48.9 bits (115), Expect(2) = 2e-07
Identities = 20/48 (41%), Positives = 29/48 (60%)
Frame = +1
Query: 493 QRRTTSETMSWKLIWKSRTPHKVMCFSWIVANEACLTIDNLQRRGLNL 636
+RR W WKS P KV CF+W+VA + CLT + +Q+R +N+
Sbjct: 399 KRRAGRSIGPWNTTWKSVAPVKVKCFTWLVARKKCLTHEAMQKRHINI 446
Score = 33.9 bits (76), Expect(2) = 2e-07
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +3
Query: 747 PGNTQDLLCCWYRQELDKATNRWY-VISACIW 839
P +T DLL CW + K+ RW+ + AC W
Sbjct: 462 PEHTSDLLSCWIKMGGSKSQKRWWRTVPACFW 493
>ref|XP_006350483.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
tuberosum]
Length = 258
Score = 56.2 bits (134), Expect(2) = 6e-07
Identities = 21/41 (51%), Positives = 31/41 (75%)
Frame = +1
Query: 517 MSWKLIWKSRTPHKVMCFSWIVANEACLTIDNLQRRGLNLC 639
+ WKLIWK + P+KV+ F+W+V EA LT +NL +RG+ +C
Sbjct: 170 LPWKLIWKVKIPYKVVVFTWLVVKEAVLTQENLMKRGIQMC 210
Score = 25.0 bits (53), Expect(2) = 6e-07
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +2
Query: 647 CGSQT*TISHLFWYCPITDRP*ELFTQLCDIKRSWEYTG 763
C TI+HLF +C + + LFT I SW G
Sbjct: 216 CEQVAETINHLFLHCKVVGQLWNLFTSFRGI--SWTVPG 252