BLASTX nr result
ID: Atropa21_contig00035806
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Atropa21_contig00035806
(1295 letters)
Database: nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulga... 372 e-100
emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga... 365 2e-98
gb|ABD33261.1| RNA-directed DNA polymerase (Reverse transcriptas... 362 2e-97
ref|XP_004247247.1| PREDICTED: uncharacterized protein LOC101256... 307 7e-81
ref|XP_004252692.1| PREDICTED: uncharacterized protein LOC101261... 280 9e-73
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc... 268 4e-69
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ... 263 2e-67
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta... 261 4e-67
dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ... 256 2e-65
dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana] 256 2e-65
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip... 249 2e-63
gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana] 247 7e-63
dbj|BAF00918.1| putative reverse transcriptase [Arabidopsis thal... 247 7e-63
emb|CCA66180.1| hypothetical protein [Beta vulgaris subsp. vulga... 246 2e-62
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta... 243 2e-61
emb|CCA66178.1| hypothetical protein [Beta vulgaris subsp. vulga... 239 2e-60
gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana] 234 4e-59
gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptas... 234 4e-59
gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thali... 233 1e-58
emb|CCA66235.1| hypothetical protein [Beta vulgaris subsp. vulga... 233 2e-58
>emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1110
Score = 372 bits (954), Expect = e-100
Identities = 186/420 (44%), Positives = 271/420 (64%)
Frame = +3
Query: 36 QKIEKARLDLRNIQDQLARQNSDSLVVMEKKALLNLEKWSLIEESVFKQKSRDKWIKLGD 215
+K++ R L+++Q Q ++D + K + +L WS IE+S+ +QKSR W++ GD
Sbjct: 298 EKVKNLRHQLQDLQSQDDFDHNDIMQTDAKSIMNDLRHWSHIEDSILQQKSRITWLQQGD 357
Query: 216 VNTKYFSAVVKDKRQHNQILELTALSGHKLSDSDDIKGEIIQFYKGLMGIVASSLPIVHK 395
N+K F VK + N+I L G + D+D+++ EI++FYK L+G AS+L V
Sbjct: 358 TNSKLFFTAVKARHAINRIDMLNTEDGRVIQDADEVQEEILEFYKKLLGTRASTLMGVDL 417
Query: 396 GIMKIRLVLSHEQQLVMSSPVTKDEIYARLKSIGEDKSPGIDGYNVIFSKKAWSIVKQDI 575
++ LS + + + V EI L IG DK+PG+DG+N F KK+W +KQ+I
Sbjct: 418 NTVRGGKCLSAQAKESLIREVASTEIDEALAGIGNDKAPGLDGFNAYFFKKSWGSIKQEI 477
Query: 576 VLVVQEFFETGRLYRAINHSTITLVPNVPHPITVKEFRPIVCCTVVYKIMSKVLAARIQK 755
+QEFF R++R IN +TL+P V H VKEFRPI CCTV+YKI+SK+L R++
Sbjct: 478 YAGIQEFFNNSRMHRPINCIVVTLLPKVQHATRVKEFRPIACCTVIYKIISKMLTNRMKG 537
Query: 756 VIPNIINEARAGFIPRWKIVENIIVAHELVKTYNMKHIYLRCMIKIDLMKAYDSVEWVYL 935
+I ++NEA++GFIP I +NI++A EL++ Y KH+ RC++K+D+ KAYDSVEW +L
Sbjct: 538 IIGEVVNEAQSGFIPGRHIADNILLASELIRGYTRKHMSPRCIMKVDIRKAYDSVEWSFL 597
Query: 936 KQVLEELRFPMKFVNWIMEYVQTVNYSIIVNRDPTTPFNDNKGLRQSDPIAPYLFAIAME 1115
+ +L E FP +FV WIME V TV+YS++VN PT PF KGLRQ DP++P+LFA+ ME
Sbjct: 598 ETLLYEFGFPSRFVGWIMECVSTVSYSVLVNGIPTQPFQARKGLRQGDPMSPFLFALCME 657
Query: 1116 YLSRILLGLT*EKTFKFHPRCFKFHLTHLCFADDLLLFTKGDLPLVEVVHQCFIIFSKAS 1295
YLSR L L F FHP+C + ++THL FADDLL+F + D ++ ++ F FS AS
Sbjct: 658 YLSRCLEELKGSPDFNFHPKCERLNITHLMFADDLLMFCRADKSSLDHMNVAFQKFSHAS 717
>emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1114
Score = 365 bits (937), Expect = 2e-98
Identities = 176/426 (41%), Positives = 273/426 (64%)
Frame = +3
Query: 18 RFKGVTQKIEKARLDLRNIQDQLARQNSDSLVVMEKKALLNLEKWSLIEESVFKQKSRDK 197
+F ++E+ R L +Q L EK + L KWS I+ES+ KQKSR +
Sbjct: 295 KFSKAHCQVEELRRKLAAVQALPEVSQVSELQEEEKDLIAQLRKWSTIDESILKQKSRIQ 354
Query: 198 WIKLGDVNTKYFSAVVKDKRQHNQILELTALSGHKLSDSDDIKGEIIQFYKGLMGIVASS 377
W+ LGD N+K+F +K ++ N+I+ L G +L+++ +I+ EI FY+ L+G +S
Sbjct: 355 WLSLGDSNSKFFFTAIKVRKARNKIVLLQNDRGDQLTENTEIQNEICNFYRRLLGTSSSQ 414
Query: 378 LPIVHKGIMKIRLVLSHEQQLVMSSPVTKDEIYARLKSIGEDKSPGIDGYNVIFSKKAWS 557
L + ++++ LS + P+T EI L I + K+PG+DG+N +F KK+W
Sbjct: 415 LEAIDLHVVRVGAKLSATSCAQLVQPITIQEIDQALADIDDTKAPGLDGFNSVFFKKSWL 474
Query: 558 IVKQDIVLVVQEFFETGRLYRAINHSTITLVPNVPHPITVKEFRPIVCCTVVYKIMSKVL 737
++KQ+I + +FFE G +++ IN + +TL+P + K++RPI CC+ +YKI+SK+L
Sbjct: 475 VIKQEIYEGILDFFENGFMHKPINCTAVTLIPKIDEAKHAKDYRPIACCSTLYKIISKIL 534
Query: 738 AARIQKVIPNIINEARAGFIPRWKIVENIIVAHELVKTYNMKHIYLRCMIKIDLMKAYDS 917
R+Q VI +++ A+ GFIP I +NI++A EL++ YN +H+ RC+IK+D+ KAYDS
Sbjct: 535 TKRLQAVITEVVDCAQTGFIPERHIGDNILLATELIRGYNRRHVSPRCVIKVDIRKAYDS 594
Query: 918 VEWVYLKQVLEELRFPMKFVNWIMEYVQTVNYSIIVNRDPTTPFNDNKGLRQSDPIAPYL 1097
VEWV+L+ +L+EL FP F+ WIM V+TV+YSI++N P+ PF+ KGLRQ DP++P+L
Sbjct: 595 VEWVFLESMLKELGFPSMFIRWIMACVKTVSYSILLNGIPSIPFDAQKGLRQGDPLSPFL 654
Query: 1098 FAIAMEYLSRILLGLT*EKTFKFHPRCFKFHLTHLCFADDLLLFTKGDLPLVEVVHQCFI 1277
FA++MEYLSR + + + F FHP+C + LTHL FADDLL+F + D + + F
Sbjct: 655 FALSMEYLSRCMGNMCKDPEFNFHPKCERIKLTHLMFADDLLMFARADASSISKIMAAFN 714
Query: 1278 IFSKAS 1295
FSKAS
Sbjct: 715 SFSKAS 720
>gb|ABD33261.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
truncatula]
Length = 402
Score = 362 bits (929), Expect = 2e-97
Identities = 184/396 (46%), Positives = 262/396 (66%)
Frame = +3
Query: 108 LVVMEKKALLNLEKWSLIEESVFKQKSRDKWIKLGDVNTKYFSAVVKDKRQHNQILELTA 287
L+ EK L +LEKWS IEE ++ QKSR WI+LGD NTK+F A K++R N I L
Sbjct: 5 LIEAEKICLSSLEKWSTIEEKIWMQKSRANWIQLGDSNTKFFHAYAKERRCQNNIKFLIT 64
Query: 288 LSGHKLSDSDDIKGEIIQFYKGLMGIVASSLPIVHKGIMKIRLVLSHEQQLVMSSPVTKD 467
G ++ + IK EI FY LMG SLP+V K ++K +LS QQ ++ S T
Sbjct: 65 EDGTRIDKHNLIKEEIRGFYLKLMGSSVDSLPMVDKNVVKRGPMLSQHQQDLLCSKFTAV 124
Query: 468 EIYARLKSIGEDKSPGIDGYNVIFSKKAWSIVKQDIVLVVQEFFETGRLYRAINHSTITL 647
E+ L S+ K+PGIDGYNV F K +W+I+ ++ + +FF+TG + + IN + +TL
Sbjct: 125 EVKNVLFSMDSSKAPGIDGYNVHFFKCSWNIIGDSVIDAILDFFKTGFMPKIINCTYMTL 184
Query: 648 VPNVPHPITVKEFRPIVCCTVVYKIMSKVLAARIQKVIPNIINEARAGFIPRWKIVENII 827
+P + +VK FRPI CC+V+YKI+SK+L +R+Q V+ ++++E ++ F+ I +NII
Sbjct: 185 LPKEVNVTSVKNFRPIACCSVIYKIISKILTSRMQGVLNSVVSENQSAFVKGRVIFDNII 244
Query: 828 VAHELVKTYNMKHIYLRCMIKIDLMKAYDSVEWVYLKQVLEELRFPMKFVNWIMEYVQTV 1007
++HELVK+Y+ K I RCM+KIDL KAY+SVEW ++K ++ EL F KFVNW+M + T
Sbjct: 245 LSHELVKSYSRKGISPRCMVKIDLQKAYNSVEWPFIKHLMLELGFSYKFVNWVMGCLTTA 304
Query: 1008 NYSIIVNRDPTTPFNDNKGLRQSDPIAPYLFAIAMEYLSRILLGLT*EKTFKFHPRCFKF 1187
+Y+ +N D T PF KGLRQ DPI+PYLF I MEYL+ L+ L F+FHPRC +
Sbjct: 305 SYTFNINGDLTRPFAAKKGLRQGDPISPYLFVICMEYLNICLIQLRKNAAFRFHPRCKRL 364
Query: 1188 HLTHLCFADDLLLFTKGDLPLVEVVHQCFIIFSKAS 1295
+L H+CF DDLLLF++GD+ V + + F +FS AS
Sbjct: 365 NLIHVCFVDDLLLFSRGDVDSVSQLFEAFSLFSAAS 400
>ref|XP_004247247.1| PREDICTED: uncharacterized protein LOC101256917 [Solanum
lycopersicum]
Length = 421
Score = 307 bits (786), Expect = 7e-81
Identities = 167/413 (40%), Positives = 242/413 (58%)
Frame = +3
Query: 57 LDLRNIQDQLARQNSDSLVVMEKKALLNLEKWSLIEESVFKQKSRDKWIKLGDVNTKYFS 236
++L I++QL + +D L+ E++ + LEKWS+IEES +QK+R KWI+LGD N KYFS
Sbjct: 1 MELAEIEEQLYNKENDKLITKEEELPIKLEKWSMIEESAQRQKARAKWIQLGDANNKYFS 60
Query: 237 AVVKDKRQHNQILELTALSGHKLSDSDDIKGEIIQFYKGLMGIVASSLPIVHKGIMKIRL 416
+V+K++ Q+ I + ++ G L + +I+ E++ FYK LMG
Sbjct: 61 SVIKERTQNKHIRNILSIHGRMLYEPQEIQDEVVLFYKSLMG------------------ 102
Query: 417 VLSHEQQLVMSSPVTKDEIYARLKSIGEDKSPGIDGYNVIFSKKAWSIVKQDIVLVVQEF 596
+S VT+++I+A L+SIG DK+PGIDGYN F K W I+K DI+ VVQ F
Sbjct: 103 ----------TSAVTEEKIFAALQSIGNDKAPGIDGYNAFFFKYTWKIIKNDIIEVVQSF 152
Query: 597 FETGRLYRAINHSTITLVPNVPHPITVKEFRPIVCCTVVYKIMSKVLAARIQKVIPNIIN 776
F+ G+L++ N + ++L+P V P VKE+R I CCTV+YKI+SKV+ R+ VI N+I
Sbjct: 153 FKPGKLFKPFNCTLVSLIPKVQSPKNVKEYRTITCCTVLYKIISKVITNRMHDVIHNVIC 212
Query: 777 EARAGFIPRWKIVENIIVAHELVKTYNMKHIYLRCMIKIDLMKAYDSVEWVYLKQVLEEL 956
+++ GFI KI ENI++AHELV +Y K+I R M+KIDL K YDSVEW +LKQV+ L
Sbjct: 213 DSQVGFILGRKISENILLAHELVNSYTRKNISPRSMLKIDLQKVYDSVEWPFLKQVMVGL 272
Query: 957 RFPMKFVNWIMEYVQTVNYSIIVNRDPTTPFNDNKGLRQSDPIAPYLFAIAMEYLSRILL 1136
FP F W+M V+TVNY+I+VN T F+ A LF
Sbjct: 273 GFPDMFTQWVMHCVKTVNYTIVVNGQTTQRFD-----------AARLF------------ 309
Query: 1137 GLT*EKTFKFHPRCFKFHLTHLCFADDLLLFTKGDLPLVEVVHQCFIIFSKAS 1295
C+ ++LLLF++GDL ++ + CF+ FS+AS
Sbjct: 310 ---------------------YCY-NNLLLFSRGDLNSIKALKGCFLEFSQAS 340
>ref|XP_004252692.1| PREDICTED: uncharacterized protein LOC101261795 [Solanum
lycopersicum]
Length = 413
Score = 280 bits (716), Expect = 9e-73
Identities = 142/319 (44%), Positives = 203/319 (63%)
Frame = +3
Query: 21 FKGVTQKIEKARLDLRNIQDQLARQNSDSLVVMEKKALLNLEKWSLIEESVFKQKSRDKW 200
F+ + Q IEK R++L +Q+QL Q SD L EK L+ ++KWS+IEES +QK+R +W
Sbjct: 126 FQYIGQNIEKKRIELVELQEQLYSQASDELFTKEKDLLIKVDKWSMIEESALRQKARARW 185
Query: 201 IKLGDVNTKYFSAVVKDKRQHNQILELTALSGHKLSDSDDIKGEIIQFYKGLMGIVASSL 380
I LGD KYFS+V+K++ Q I S L
Sbjct: 186 ITLGDAKNKYFSSVIKERNQKKHI--------------------------------RSKL 213
Query: 381 PIVHKGIMKIRLVLSHEQQLVMSSPVTKDEIYARLKSIGEDKSPGIDGYNVIFSKKAWSI 560
P ++ +MK V S +Q++ + + +T+ EIY+ L+S G DK+PGIDGYN +F K W I
Sbjct: 214 PAINAQVMKRGPVSSRQQRIQLCTDITEQEIYSTLQSYGNDKAPGIDGYNALFFKHTWKI 273
Query: 561 VKQDIVLVVQEFFETGRLYRAINHSTITLVPNVPHPITVKEFRPIVCCTVVYKIMSKVLA 740
+K+D++ V+ FF TG+L++ N + ++L+P V P TVKE+ PI CCTV+YKI+SKV+
Sbjct: 274 IKKDVIEAVKNFFTTGKLFKPFNCTLVSLIPKVQCPKTVKEYTPIACCTVLYKIISKVIT 333
Query: 741 ARIQKVIPNIINEARAGFIPRWKIVENIIVAHELVKTYNMKHIYLRCMIKIDLMKAYDSV 920
R+ VI ++I E++AGFIP KI +NII+AHELVKTY K+I R ++KIDL KAYDSV
Sbjct: 334 RRMHDVIHDVICESQAGFIPGRKIADNIILAHELVKTYTRKNISPRIILKIDLHKAYDSV 393
Query: 921 EWVYLKQVLEELRFPMKFV 977
EW +L+QV+ L FP F+
Sbjct: 394 EWPFLEQVMVGLGFPEMFI 412
>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
Length = 1214
Score = 268 bits (685), Expect = 4e-69
Identities = 143/410 (34%), Positives = 243/410 (59%), Gaps = 4/410 (0%)
Frame = +3
Query: 21 FKGVTQKIEKARLDLRNIQDQLARQNSDSLVVMEKKALLNLEKWSLIEESVFKQKSRDKW 200
+ G+ +++ +A +L+ Q+ L S L +EK+A + + +L EE QKSR W
Sbjct: 299 YSGLEKRVVQAAQNLKTCQNNLLAAPSSYLAGLEKEAHRSWAELALAEERFLCQKSRVLW 358
Query: 201 IKLGDVNTKYFSAVVKDKRQHNQILELTALSGHKLSDSDDIKGEIIQFYKGLMGIVASSL 380
+K GD NT +F ++ +R N+I L +G ++ ++D+++ + F+K L G +SS
Sbjct: 359 LKCGDSNTTFFHRMMTARRAINEIHYLLDQTGRRIENTDELQTHCVDFFKELFG--SSSH 416
Query: 381 PIVHKGIMKI----RLVLSHEQQLVMSSPVTKDEIYARLKSIGEDKSPGIDGYNVIFSKK 548
I +GI +I R + ++ + V++ +I + ++ +KSPG DGY F KK
Sbjct: 417 LISAEGISQINSLTRFKCDENTRQLLEAEVSEADIKSEFFALPSNKSPGPDGYTSEFFKK 476
Query: 549 AWSIVKQDIVLVVQEFFETGRLYRAINHSTITLVPNVPHPITVKEFRPIVCCTVVYKIMS 728
WSIV ++ VQEFF +GRL N + +T+VP P+ + EFRPI CC +YK++S
Sbjct: 477 TWSIVGPSLIAAVQEFFRSGRLLGQWNSTAVTMVPKKPNADRITEFRPISCCNAIYKVIS 536
Query: 729 KVLAARIQKVIPNIINEARAGFIPRWKIVENIIVAHELVKTYNMKHIYLRCMIKIDLMKA 908
K+LA R++ ++P I+ +++ F+ + EN+++A ELV+ + +I R ++K+DL KA
Sbjct: 537 KLLARRLENILPLWISPSQSAFVKGRLLTENVLLATELVQGFGQANISSRGVLKVDLRKA 596
Query: 909 YDSVEWVYLKQVLEELRFPMKFVNWIMEYVQTVNYSIIVNRDPTTPFNDNKGLRQSDPIA 1088
+DSV W ++ + L+ P +FVNWI + + + ++SI V+ F +KGLRQ DP++
Sbjct: 597 FDSVGWGFIIETLKAANAPPRFVNWIKQCITSTSFSINVSGSLCGYFKGSKGLRQGDPLS 656
Query: 1089 PYLFAIAMEYLSRILLGLT*EKTFKFHPRCFKFHLTHLCFADDLLLFTKG 1238
P LF IAME LSR+L + + +HP+ + ++ L FADDL++F G
Sbjct: 657 PSLFVIAMEILSRLLENKFSDGSIGYHPKASEVRISSLAFADDLMIFYDG 706
>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
thaliana]
Length = 1223
Score = 263 bits (671), Expect = 2e-67
Identities = 143/405 (35%), Positives = 232/405 (57%), Gaps = 5/405 (1%)
Frame = +3
Query: 96 NSDSLVVMEKKALLNL-EKWSLIEESVFKQKSRDKWIKLGDVNTKYFSAVVKDKRQHNQI 272
N S+ + E+ A + ++ +++EE KQKS+ W ++GD NTK F + HN I
Sbjct: 330 NPSSMAMEEENAAYSRWDRVAILEEKYLKQKSKLHWCQVGDQNTKAFHRAAAAREAHNTI 389
Query: 273 LELTALSGHKLSDSDDIKGEIIQFYKGLMGIVASSLPIVH----KGIMKIRLVLSHEQQL 440
E+ + G + D+IK E +F++ + ++ + V + ++ +R + +Q L
Sbjct: 390 REILSNDGIVKTKGDEIKAEAERFFREFLQLIPNDFEGVTITELQQLLPVRCSDADQQSL 449
Query: 441 VMSSPVTKDEIYARLKSIGEDKSPGIDGYNVIFSKKAWSIVKQDIVLVVQEFFETGRLYR 620
+ PVT +EI L + DKSPG DGY F K W I+ + L VQ FF G L +
Sbjct: 450 IR--PVTAEEIRKVLFRMPSDKSPGPDGYTSEFFKATWEIIGDEFTLAVQSFFTKGFLPK 507
Query: 621 AINHSTITLVPNVPHPITVKEFRPIVCCTVVYKIMSKVLAARIQKVIPNIINEARAGFIP 800
IN + + L+P +K++RPI CC V+YK++SK++A R++ V+P I ++ F+
Sbjct: 508 GINSTILALIPKKTEAREMKDYRPISCCNVLYKVISKIIANRLKLVLPKFIAGNQSAFVK 567
Query: 801 RWKIVENIIVAHELVKTYNMKHIYLRCMIKIDLMKAYDSVEWVYLKQVLEELRFPMKFVN 980
++EN+++A ELVK Y+ I RC IKID+ KA+DSV+W +L V L FP +F++
Sbjct: 568 DRLLIENLLLATELVKDYHKDTISTRCAIKIDISKAFDSVQWPFLINVFTILGFPREFIH 627
Query: 981 WIMEYVQTVNYSIIVNRDPTTPFNDNKGLRQSDPIAPYLFAIAMEYLSRILLGLT*EKTF 1160
WI + T ++S+ VN + F ++GLRQ ++PYLF I M+ LS++L + F
Sbjct: 628 WINICITTASFSVQVNGELAGYFQSSRGLRQGCALSPYLFVICMDVLSKMLDKAAAARHF 687
Query: 1161 KFHPRCFKFHLTHLCFADDLLLFTKGDLPLVEVVHQCFIIFSKAS 1295
+HP+C LTHL FADDL++ + G + +E + + F F+K S
Sbjct: 688 GYHPKCKTMGLTHLSFADDLMVLSDGKIRSIERIIKVFDEFAKWS 732
>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1529
Score = 261 bits (667), Expect = 4e-67
Identities = 139/403 (34%), Positives = 224/403 (55%), Gaps = 4/403 (0%)
Frame = +3
Query: 99 SDSLVVMEKKALLNLEKWSLIEESVFKQKSRDKWIKLGDVNTKYFSAVVKDKRQHNQILE 278
S + E KA + S +EE KQKS+ W+ +GD N YF + ++ N I E
Sbjct: 629 SQETIAEELKAYTDWTHLSELEEGFLKQKSKLHWMNVGDGNNSYFHKAAQVRKMRNSIRE 688
Query: 279 LTALSGHKLSDSDDIKGEIIQFYKGLMGIVASSLPIVHKGIMKIRLVLSHE----QQLVM 446
+ + L S++IKGE +F+ + + + + +R ++S+ Q ++
Sbjct: 689 IRGPNAETLQTSEEIKGEAERFFNEFLNRQSGDFHGI--SVEDLRNLMSYRCSVTDQNIL 746
Query: 447 SSPVTKDEIYARLKSIGEDKSPGIDGYNVIFSKKAWSIVKQDIVLVVQEFFETGRLYRAI 626
+ VT +EI L ++ +KSPG DGY F K WS+ D + +Q FF G L + +
Sbjct: 747 TREVTGEEIQKVLFAMPNNKSPGPDGYTSEFFKATWSLTGPDFIAAIQSFFVKGFLPKGL 806
Query: 627 NHSTITLVPNVPHPITVKEFRPIVCCTVVYKIMSKVLAARIQKVIPNIINEARAGFIPRW 806
N + + L+P I +K++RPI CC V+YK++SK+LA R++ ++P+ I + ++ F+
Sbjct: 807 NATILALIPKKDEAIEMKDYRPISCCNVLYKVISKILANRLKLLLPSFILQNQSAFVKER 866
Query: 807 KIVENIIVAHELVKTYNMKHIYLRCMIKIDLMKAYDSVEWVYLKQVLEELRFPMKFVNWI 986
++EN+++A ELVK Y+ + + RC +KID+ KA+DSV+W +L LE L FP F +WI
Sbjct: 867 LLMENVLLATELVKDYHKESVTPRCAMKIDISKAFDSVQWQFLLNTLEALNFPETFRHWI 926
Query: 987 MEYVQTVNYSIIVNRDPTTPFNDNKGLRQSDPIAPYLFAIAMEYLSRILLGLT*EKTFKF 1166
+ T +S+ VN + F ++GLRQ ++PYLF I M LS ++ + +
Sbjct: 927 KLCISTATFSVQVNGELAGFFGSSRGLRQGCALSPYLFVICMNVLSHMIDEAAVHRNIGY 986
Query: 1167 HPRCFKFHLTHLCFADDLLLFTKGDLPLVEVVHQCFIIFSKAS 1295
HP+C K LTHLCFADDL++F G +E V F F+ S
Sbjct: 987 HPKCEKIGLTHLCFADDLMVFVDGHQWSIEGVINVFKEFAGRS 1029
>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
thaliana]
Length = 1072
Score = 256 bits (653), Expect = 2e-65
Identities = 134/407 (32%), Positives = 224/407 (55%), Gaps = 1/407 (0%)
Frame = +3
Query: 21 FKGVTQKIEKARLDLRNIQDQLARQNSDSLVVMEKKALLNLEKWSLIEESVFKQKSRDKW 200
+ G+ + ++A L Q+ S S +E +A S EES F Q+SR W
Sbjct: 161 YSGIELRTKEAHELLITCQNLTLANPSVSNAALELEAQRKWVLLSCAEESFFHQRSRVSW 220
Query: 201 IKLGDVNTKYFSAVVKDKRQHNQILELTALSGHKLSDSDDIKGEIIQFYKGLMGIVASSL 380
GD NT YF +V ++ N I L +G + I + +Y+ L+G + S
Sbjct: 221 FAEGDSNTHYFHRMVDSRKSFNTINSLVDSNGLLIDSQQGILDHCVTYYERLLGSIESPF 280
Query: 381 PIVHKGI-MKIRLVLSHEQQLVMSSPVTKDEIYARLKSIGEDKSPGIDGYNVIFSKKAWS 557
+ + + + + S +Q + T DEI A KS+ +K+ G DGY+V F + WS
Sbjct: 281 SMEQEDMNLLLTYRCSQDQCSELEKSFTDDEIKAAFKSLPRNKTSGPDGYSVEFFRDTWS 340
Query: 558 IVKQDIVLVVQEFFETGRLYRAINHSTITLVPNVPHPITVKEFRPIVCCTVVYKIMSKVL 737
I+ +++ + EFF++G+L + N +T+ L+P + T+ EFRPI C +YK++SK+L
Sbjct: 341 IIGPEVLAAIHEFFDSGQLLKQWNATTLVLIPKTSNACTISEFRPISCLNTLYKVISKLL 400
Query: 738 AARIQKVIPNIINEARAGFIPRWKIVENIIVAHELVKTYNMKHIYLRCMIKIDLMKAYDS 917
+R+Q ++ +I +++ F+P + EN+++A E+V YN +I R M+K+DL KA+DS
Sbjct: 401 TSRLQGLLSAVIGHSQSAFLPGRSLAENVLLATEMVHGYNRLNISPRGMLKVDLKKAFDS 460
Query: 918 VEWVYLKQVLEELRFPMKFVNWIMEYVQTVNYSIIVNRDPTTPFNDNKGLRQSDPIAPYL 1097
V+W ++ L L P +++NWI + + T +++I VN F KGLRQ DP++PYL
Sbjct: 461 VKWEFVTAALRALAIPERYINWIHQCITTPSFTISVNGATGGFFRSTKGLRQGDPLSPYL 520
Query: 1098 FAIAMEYLSRILLGLT*EKTFKFHPRCFKFHLTHLCFADDLLLFTKG 1238
F +AME S++L +HP+ ++HL FADD+++F G
Sbjct: 521 FVLAMEVFSKLLYSRYDSGYIHYHPKAGDLSISHLMFADDVMIFFDG 567
>dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
Length = 1072
Score = 256 bits (653), Expect = 2e-65
Identities = 134/407 (32%), Positives = 224/407 (55%), Gaps = 1/407 (0%)
Frame = +3
Query: 21 FKGVTQKIEKARLDLRNIQDQLARQNSDSLVVMEKKALLNLEKWSLIEESVFKQKSRDKW 200
+ G+ + ++A L Q+ S S +E +A S EES F Q+SR W
Sbjct: 161 YSGIELRTKEAHELLITCQNLTLANPSVSNAALELEAQRKWVLLSCAEESFFHQRSRVSW 220
Query: 201 IKLGDVNTKYFSAVVKDKRQHNQILELTALSGHKLSDSDDIKGEIIQFYKGLMGIVASSL 380
GD NT YF +V ++ N I L +G + I + +Y+ L+G + S
Sbjct: 221 FAEGDSNTHYFHRMVDSRKSFNTINSLVDSNGLLIDSQQGILDHCVTYYERLLGSIESPF 280
Query: 381 PIVHKGI-MKIRLVLSHEQQLVMSSPVTKDEIYARLKSIGEDKSPGIDGYNVIFSKKAWS 557
+ + + + + S +Q + T DEI A KS+ +K+ G DGY+V F + WS
Sbjct: 281 SMEQEDMNLLLTYRCSQDQCSELEKSFTDDEIKAAFKSLPRNKTSGPDGYSVEFFRDTWS 340
Query: 558 IVKQDIVLVVQEFFETGRLYRAINHSTITLVPNVPHPITVKEFRPIVCCTVVYKIMSKVL 737
I+ +++ + EFF++G+L + N +T+ L+P + T+ EFRPI C +YK++SK+L
Sbjct: 341 IIGPEVLAAIHEFFDSGQLLKQWNATTLVLIPKTSNACTISEFRPISCLNTLYKVISKLL 400
Query: 738 AARIQKVIPNIINEARAGFIPRWKIVENIIVAHELVKTYNMKHIYLRCMIKIDLMKAYDS 917
+R+Q ++ +I +++ F+P + EN+++A E+V YN +I R M+K+DL KA+DS
Sbjct: 401 TSRLQGLLSAVIGHSQSAFLPGRSLAENVLLATEMVHGYNRLNISPRGMLKVDLKKAFDS 460
Query: 918 VEWVYLKQVLEELRFPMKFVNWIMEYVQTVNYSIIVNRDPTTPFNDNKGLRQSDPIAPYL 1097
V+W ++ L L P +++NWI + + T +++I VN F KGLRQ DP++PYL
Sbjct: 461 VKWEFVTAALRALAIPERYINWIHQCITTPSFTISVNGATGGFFRSTKGLRQGDPLSPYL 520
Query: 1098 FAIAMEYLSRILLGLT*EKTFKFHPRCFKFHLTHLCFADDLLLFTKG 1238
F +AME S++L +HP+ ++HL FADD+++F G
Sbjct: 521 FVLAMEVFSKLLYSRYDSGYIHYHPKAGDLSISHLMFADDVMIFFDG 567
>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
72.31) [Arabidopsis thaliana]
Length = 928
Score = 249 bits (635), Expect = 2e-63
Identities = 131/403 (32%), Positives = 230/403 (57%), Gaps = 4/403 (0%)
Frame = +3
Query: 99 SDSLVVMEKKALLNLEKWSLIEESVFKQKSRDKWIKLGDVNTKYFSAVVKDKRQHNQILE 278
S S + E +A + +++EE KQ+S+ W+ +GD N K F V + N I E
Sbjct: 220 SPSSMQEENEAYAKWDHIAVLEEKFLKQRSKLHWLDIGDRNNKAFHRAVVAREAQNSIRE 279
Query: 279 LTALSGHKLSDSDDIKGEIIQFYKGLMGIVASSLPIVHKGIMKIRLVL----SHEQQLVM 446
+ G S + IK E ++ + ++ + + + +++ +L S + ++
Sbjct: 280 IICHDGSVASQEEKIKTEAEHHFREFLQLIPNDFEGI--AVEELQDLLPYRCSDSDKEML 337
Query: 447 SSPVTKDEIYARLKSIGEDKSPGIDGYNVIFSKKAWSIVKQDIVLVVQEFFETGRLYRAI 626
++ V+ +EI+ + S+ DKSPG DGY F K AW+I+ + +L +Q FF G L + I
Sbjct: 338 TNHVSAEEIHKVVFSMPNDKSPGPDGYTAEFYKGAWNIIGAEFILAIQSFFAKGFLPKGI 397
Query: 627 NHSTITLVPNVPHPITVKEFRPIVCCTVVYKIMSKVLAARIQKVIPNIINEARAGFIPRW 806
N + + L+P +K++RPI CC V+YK++SK++A R++ V+P I ++ F+
Sbjct: 398 NSTILALIPKKKEAKEMKDYRPISCCNVLYKVISKIIANRLKLVLPKFIVGNQSAFVKDR 457
Query: 807 KIVENIIVAHELVKTYNMKHIYLRCMIKIDLMKAYDSVEWVYLKQVLEELRFPMKFVNWI 986
++EN+++A E+VK Y+ + RC +KID+ KA+DSV+W +L VLE + FP +F +WI
Sbjct: 458 LLIENVLLATEIVKDYHKDSVSSRCALKIDISKAFDSVQWKFLINVLEAMNFPPEFTHWI 517
Query: 987 MEYVQTVNYSIIVNRDPTTPFNDNKGLRQSDPIAPYLFAIAMEYLSRILLGLT*EKTFKF 1166
+ T ++S+ VN + F+ + LRQ ++PYLF I+M+ LS++L + F +
Sbjct: 518 TLCITTASFSVQVNGELAGVFSSARELRQGCSLSPYLFVISMDVLSKMLDKAVGARQFGY 577
Query: 1167 HPRCFKFHLTHLCFADDLLLFTKGDLPLVEVVHQCFIIFSKAS 1295
HP+C LTHL FADDL++ + G + ++ + + F+K S
Sbjct: 578 HPKCRAIGLTHLSFADDLMILSDGKVRSIDGIVKVLYEFAKWS 620
>gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana]
Length = 1161
Score = 247 bits (631), Expect = 7e-63
Identities = 138/411 (33%), Positives = 228/411 (55%), Gaps = 4/411 (0%)
Frame = +3
Query: 18 RFKGVTQKIEKARLDLRNIQDQLARQNSDSLVVMEKKALLNLEKWSLIEESVFKQKSRDK 197
RF + Q+ ++ L +IQ +L SD+L E A ++ ES F+QKSR +
Sbjct: 342 RFSNIQQRTAQSLTRLEDIQVELLTSPSDTLFRREHVARKQWIFFAAALESFFRQKSRIR 401
Query: 198 WIKLGDVNTKYFSAVVKDKRQHNQILELTALSGHKLSDSDDIKGEIIQFYKGLMGIVASS 377
W+ GD NT++F V + N I L G ++ + D IKG +I +Y L+GI + +
Sbjct: 402 WLHEGDANTRFFHRAVIAHQATNLIKFLRGDDGFRVENVDQIKGMLIAYYSHLLGIPSEN 461
Query: 378 LPIVHKGIMKIRLVLSHEQQLVMSSPVT----KDEIYARLKSIGEDKSPGIDGYNVIFSK 545
+ + KI+ +L ++S +T ++EI L S+ +K+PG DG+ V F
Sbjct: 462 --VTPFSVEKIKGLLPFRCDSFLASQLTTIPSEEEITQVLFSMPRNKAPGPDGFPVEFFI 519
Query: 546 KAWSIVKQDIVLVVQEFFETGRLYRAINHSTITLVPNVPHPITVKEFRPIVCCTVVYKIM 725
+AW+IVK +V ++EFF +G L R N + ITL+P V + +FRP+ CCT +YK++
Sbjct: 520 EAWAIVKSSVVAAIREFFISGNLPRGFNATAITLIPKVTGADRLTQFRPVACCTTIYKVI 579
Query: 726 SKVLAARIQKVIPNIINEARAGFIPRWKIVENIIVAHELVKTYNMKHIYLRCMIKIDLMK 905
+++++ R++ I + + GFI + EN+++A ELV + R +++D+ K
Sbjct: 580 TRIISRRLKLFIDQAVQANQVGFIKGRLLCENVLLASELVDNFEADGETTRGCLQVDISK 639
Query: 906 AYDSVEWVYLKQVLEELRFPMKFVNWIMEYVQTVNYSIIVNRDPTTPFNDNKGLRQSDPI 1085
AYD+V W +L +L+ L P+ F++WI + + +YSI N + F KG+RQ DP+
Sbjct: 640 AYDNVNWEFLINILKALDLPLVFIHWIWVCISSASYSIAFNGELIGFFQGKKGIRQGDPM 699
Query: 1086 APYLFAIAMEYLSRILLGLT*EKTFKFHPRCFKFHLTHLCFADDLLLFTKG 1238
+ +LF + M+ LS+ L F HP C +THL FADD+L+F+ G
Sbjct: 700 SSHLFVLVMDVLSKSLDLGALNGLFNLHPNCLAPIITHLSFADDVLVFSDG 750
>dbj|BAF00918.1| putative reverse transcriptase [Arabidopsis thaliana]
Length = 910
Score = 247 bits (631), Expect = 7e-63
Identities = 138/411 (33%), Positives = 228/411 (55%), Gaps = 4/411 (0%)
Frame = +3
Query: 18 RFKGVTQKIEKARLDLRNIQDQLARQNSDSLVVMEKKALLNLEKWSLIEESVFKQKSRDK 197
RF + Q+ ++ L +IQ +L SD+L E A ++ ES F+QKSR +
Sbjct: 299 RFSNIQQRTAQSLTRLEDIQVELLTSPSDTLFRREHVARKQWIFFAAALESFFRQKSRIR 358
Query: 198 WIKLGDVNTKYFSAVVKDKRQHNQILELTALSGHKLSDSDDIKGEIIQFYKGLMGIVASS 377
W+ GD NT++F V + N I L G ++ + D IKG +I +Y L+GI + +
Sbjct: 359 WLHEGDANTRFFHRAVIAHQATNLIKFLRGDDGFRVENVDQIKGMLIAYYSHLLGIPSEN 418
Query: 378 LPIVHKGIMKIRLVLSHEQQLVMSSPVT----KDEIYARLKSIGEDKSPGIDGYNVIFSK 545
+ + KI+ +L ++S +T ++EI L S+ +K+PG DG+ V F
Sbjct: 419 --VTPFSVEKIKGLLPFRCDSFLASQLTTIPSEEEITQVLFSMPRNKAPGPDGFPVEFFI 476
Query: 546 KAWSIVKQDIVLVVQEFFETGRLYRAINHSTITLVPNVPHPITVKEFRPIVCCTVVYKIM 725
+AW+IVK +V ++EFF +G L R N + ITL+P V + +FRP+ CCT +YK++
Sbjct: 477 EAWAIVKSSVVAAIREFFISGNLPRGFNATAITLIPKVTGADRLTQFRPVACCTTIYKVI 536
Query: 726 SKVLAARIQKVIPNIINEARAGFIPRWKIVENIIVAHELVKTYNMKHIYLRCMIKIDLMK 905
+++++ R++ I + + GFI + EN+++A ELV + R +++D+ K
Sbjct: 537 TRIISRRLKLFIDQAVQANQVGFIKGRLLCENVLLASELVDNFEADGETTRGCLQVDISK 596
Query: 906 AYDSVEWVYLKQVLEELRFPMKFVNWIMEYVQTVNYSIIVNRDPTTPFNDNKGLRQSDPI 1085
AYD+V W +L +L+ L P+ F++WI + + +YSI N + F KG+RQ DP+
Sbjct: 597 AYDNVNWEFLINILKALDLPLVFIHWIWVCISSASYSIAFNGELIGFFQGKKGIRQGDPM 656
Query: 1086 APYLFAIAMEYLSRILLGLT*EKTFKFHPRCFKFHLTHLCFADDLLLFTKG 1238
+ +LF + M+ LS+ L F HP C +THL FADD+L+F+ G
Sbjct: 657 SSHLFVLVMDVLSKSLDLGALNGLFNLHPNCLAPIITHLSFADDVLVFSDG 707
>emb|CCA66180.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1383
Score = 246 bits (627), Expect = 2e-62
Identities = 134/392 (34%), Positives = 229/392 (58%), Gaps = 1/392 (0%)
Frame = +3
Query: 123 KKALLNLEKWSLIEESVFKQKSRDKWIKLGDVNTKYFSAVVKDKRQHNQILELTALSGHK 302
++A +L KW +E + Q+SR W+K GD NTK+F A+ +K++ N ++ G
Sbjct: 322 REAQADLWKWMKRKEIYWAQRSRITWLKAGDKNTKFFHAIASNKKRKN-MMACIETDGQS 380
Query: 303 LSDSDDIKGEIIQFYKGLMGIVASSLPIVHKGIMKIRLVLSHEQQLVMSSPVTKDEIYAR 482
+D IK E F+K + P + +K LS Q + +P T +EI
Sbjct: 381 TNDPSQIKKEARAFFKKIFKEDHVKRPTLENLHLKR---LSQNQANSLITPFTTEEIDTA 437
Query: 483 LKSIGEDKSPGIDGYNVIFSKKAWSIVKQDIVLVVQEFFETGRLYRAINHSTITLVPNVP 662
+ S DK+PG DG+N F K AW I+K DI +V +F+ETG L + N + I L+P +
Sbjct: 438 VSSCASDKAPGPDGFNFKFVKSAWDIIKTDIYGIVNDFWETGCLPQGCNTAYIALIPKID 497
Query: 663 HPITVKEFRPIVCCTVVYKIMSKVLAARIQKVIPNIINEARAGFIPRWKIVENIIVAHEL 842
+P ++K++RPI +YKI++K+LA R+Q VI ++I+ ++ ++ +I++ +VA E+
Sbjct: 498 NPSSLKDYRPISMVGFIYKIVAKLLAKRLQSVISSLISPLQSSYVKGRQILDGALVASEI 557
Query: 843 VKTYNMKHIYLRCMIKIDLMKAYDSVEWVYLKQVLEELRFPMKFVNWIMEYVQTVNYSII 1022
+++ ++I ++K+D KAYDSV W +L+ L+++ FP+K+ WI V + + SI+
Sbjct: 558 IESCKKRNIE-AILLKLDFHKAYDSVSWNFLQWTLDQMNFPVKWCEWIKTCVTSASASIL 616
Query: 1023 VNRDPTTPFNDNKGLRQSDPIAPYLFAIAMEYLSRILLGLT*EKTFKFHPRCFK-FHLTH 1199
VN PT PF ++GLRQ DP++P+LF + E LS+++ T + ++ P C + +TH
Sbjct: 617 VNGSPTPPFKLHRGLRQGDPLSPFLFVLVGEVLSQMISKATSLQLWRGIPACSRGSEITH 676
Query: 1200 LCFADDLLLFTKGDLPLVEVVHQCFIIFSKAS 1295
L +ADD L+F + + ++ + + IIF S
Sbjct: 677 LQYADDTLMFCEANTNSLKNIQKTLIIFQLVS 708
>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1216
Score = 243 bits (619), Expect = 2e-61
Identities = 123/356 (34%), Positives = 206/356 (57%), Gaps = 6/356 (1%)
Frame = +3
Query: 207 LGDVNTKYFSAVVKDKRQHNQILELTALSGHKLSDSDDIKGEIIQFYKGLMGIVASSLPI 386
+GD N K F + + N I E+ G ++ DI+ E + +++ + ++P
Sbjct: 89 VGDRNNKTFHRAITTREAVNSIREIVTRDGLVVTSQQDIQTEAVNYFQDFL----QTIPA 144
Query: 387 VHKGIMKIRLV------LSHEQQLVMSSPVTKDEIYARLKSIGEDKSPGIDGYNVIFSKK 548
++G+ L S + +++ VT +EI + S+ +DKSPG DGY F K
Sbjct: 145 DYEGMCVEELENLLPFRCSEDDHRLLTRVVTGEEIKKVIFSMPKDKSPGPDGYTSEFYKA 204
Query: 549 AWSIVKQDIVLVVQEFFETGRLYRAINHSTITLVPNVPHPITVKEFRPIVCCTVVYKIMS 728
+W I+ ++++ +Q FF G L + +N + + L+P +K++RPI CC V+YK +S
Sbjct: 205 SWEIIGDEVIIAIQSFFAKGFLPKGVNSTILALIPKKKEAREIKDYRPISCCNVLYKAIS 264
Query: 729 KVLAARIQKVIPNIINEARAGFIPRWKIVENIIVAHELVKTYNMKHIYLRCMIKIDLMKA 908
K+LA R+++++P I ++ F+ ++EN+++A ELVK Y+ I RC +KID+ KA
Sbjct: 265 KILANRLKRILPKFIVGNQSAFVKDRLLIENVLLATELVKDYHKDSISTRCAMKIDISKA 324
Query: 909 YDSVEWVYLKQVLEELRFPMKFVNWIMEYVQTVNYSIIVNRDPTTPFNDNKGLRQSDPIA 1088
+DS++W +L VL + FP +F++WI + T ++SI VN + F +GLRQ ++
Sbjct: 325 FDSLQWSFLTHVLAAMNFPGEFIHWISLCMSTASFSIQVNGELAGYFRSARGLRQGCSLS 384
Query: 1089 PYLFAIAMEYLSRILLGLT*EKTFKFHPRCFKFHLTHLCFADDLLLFTKGDLPLVE 1256
PYLF I+M+ LSR+L + F +HPRC LTHLCFADDL++ T G + V+
Sbjct: 385 PYLFVISMDVLSRMLDKAAGAREFGYHPRCKTLGLTHLCFADDLMILTDGKIRSVD 440
>emb|CCA66178.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1381
Score = 239 bits (609), Expect = 2e-60
Identities = 139/427 (32%), Positives = 237/427 (55%), Gaps = 2/427 (0%)
Frame = +3
Query: 21 FKGVTQKIEKARLDLRNIQDQLARQNSDSLVVMEKK-ALLNLEKWSLIEESVFKQKSRDK 197
F + KI+K +++++ ++ D+ + +K A + L KW E + Q SR
Sbjct: 286 FGNIDSKIKKFESEIQHLDSINNTRDLDTQELENRKEAQVELWKWIKRREMYWAQNSRVT 345
Query: 198 WIKLGDVNTKYFSAVVKDKRQHNQILELTALSGHKLSDSDDIKGEIIQFYKGLMGIVASS 377
W+K GD NT +F A+ +KR+ N I + + G K+ + IK E ++K +
Sbjct: 346 WLKEGDRNTMFFHAIASNKRRKNSITTVE-VDGLKIDEPSRIKWEATTYFKKIFKEEHGC 404
Query: 378 LPIVHKGIMKIRLVLSHEQQLVMSSPVTKDEIYARLKSIGEDKSPGIDGYNVIFSKKAWS 557
P+ K ++HEQ ++ P + +EI + + DK+PG DG+N F K AW
Sbjct: 405 RPLFEDLNFKC---VTHEQAEQLTLPFSCEEIDEAVSTCSSDKAPGPDGFNFKFIKSAWG 461
Query: 558 IVKQDIVLVVQEFFETGRLYRAINHSTITLVPNVPHPITVKEFRPIVCCTVVYKIMSKVL 737
I+K DI +V +F+E+ RL + N + I L+P + +P K++RPI +YKI++KV+
Sbjct: 462 IIKHDIYEMVHKFWESSRLPQGSNVAYIALIPKMSNPKNFKDYRPISMVGCLYKIIAKVM 521
Query: 738 AARIQKVIPNIINEARAGFIPRWKIVENIIVAHELVKTYNMKHIYLRCMIKIDLMKAYDS 917
A R+QK++ ++I ++ +I +I++ +VA E++ + + + K+D KAYDS
Sbjct: 522 AKRLQKIMSSLIGPLQSSYIEGRQILDGALVAGEVIDSCKKSGVE-AILFKLDFHKAYDS 580
Query: 918 VEWVYLKQVLEELRFPMKFVNWIMEYVQTVNYSIIVNRDPTTPFNDNKGLRQSDPIAPYL 1097
V W +LK +L ++RFP ++ WIM V T + SI+VN P+TPF +GLRQ DP++P+L
Sbjct: 581 VSWSFLKWILMQMRFPEQWCQWIMTCVTTASASILVNGSPSTPFKLKRGLRQGDPLSPFL 640
Query: 1098 FAIAMEYLSRILLGLT*EKTFKFHPRCFK-FHLTHLCFADDLLLFTKGDLPLVEVVHQCF 1274
F + E L++++L T + C +THL +ADD L+F+ L ++ +
Sbjct: 641 FVLIGEALNQVILKATNMGLWSGVEVCRNGLKITHLQYADDTLVFSDARLESLKNIKMAL 700
Query: 1275 IIFSKAS 1295
I+F AS
Sbjct: 701 ILFHLAS 707
>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
Length = 1213
Score = 234 bits (598), Expect = 4e-59
Identities = 125/369 (33%), Positives = 203/369 (55%), Gaps = 5/369 (1%)
Frame = +3
Query: 147 KWSLI---EESVFKQKSRDKWIKLGDVNTKYFSAVVKDKRQHNQILELTALSGHKLSDSD 317
KW ++ EES F+QKSR W GD NTKYF + + N I L +G + +
Sbjct: 340 KWHILTAAEESFFRQKSRISWFAEGDGNTKYFHRMADARNSSNSISALYDGNGKLVDSQE 399
Query: 318 DIKGEIIQFYKGLMGIVASSLPIVHKGIMKIRLVL--SHEQQLVMSSPVTKDEIYARLKS 491
I ++ L+G ++ + M + L S Q + S + ++I A L S
Sbjct: 400 GILDLCASYFGSLLGDEVDPY-LMEQNDMNLLLSYRCSPAQVCELESTFSNEDIRAALFS 458
Query: 492 IGEDKSPGIDGYNVIFSKKAWSIVKQDIVLVVQEFFETGRLYRAINHSTITLVPNVPHPI 671
+ +KS G DG+ F +WSIV ++ ++EFF +G L + N +TI L+P + +P
Sbjct: 459 LPRNKSCGPDGFTAEFFIDSWSIVGAEVTDAIKEFFSSGCLLKQWNATTIVLIPKIVNPT 518
Query: 672 TVKEFRPIVCCTVVYKIMSKVLAARIQKVIPNIINEARAGFIPRWKIVENIIVAHELVKT 851
+FRPI C +YK+++++L R+Q+++ +I+ A++ F+P + EN+++A +LV
Sbjct: 519 CTSDFRPISCLNTLYKVIARLLTDRLQRLLSGVISSAQSAFLPGRSLAENVLLATDLVHG 578
Query: 852 YNMKHIYLRCMIKIDLMKAYDSVEWVYLKQVLEELRFPMKFVNWIMEYVQTVNYSIIVNR 1031
YN +I R M+K+DL KA+DSV W ++ L L P KF+NWI + + T +++ +N
Sbjct: 579 YNWSNISPRGMLKVDLKKAFDSVRWEFVIAALRALAIPEKFINWISQCISTPTFTVSING 638
Query: 1032 DPTTPFNDNKGLRQSDPIAPYLFAIAMEYLSRILLGLT*EKTFKFHPRCFKFHLTHLCFA 1211
F KGLRQ DP++PYLF +AME S +L +HP+ ++HL FA
Sbjct: 639 GNGGFFKSTKGLRQGDPLSPYLFVLAMEAFSNLLHSRYESGLIHYHPKASNLSISHLMFA 698
Query: 1212 DDLLLFTKG 1238
DD+++F G
Sbjct: 699 DDVMIFFDG 707
>gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
[Medicago truncatula]
Length = 1296
Score = 234 bits (598), Expect = 4e-59
Identities = 144/429 (33%), Positives = 231/429 (53%), Gaps = 4/429 (0%)
Frame = +3
Query: 21 FKGVTQKIEKARLDLRNIQDQLARQNSDSLVVMEKKALLNLEKWSLIEESVFKQKSRDKW 200
F + Q+ + L+ +Q L R +S ++EK+ EE ++ QKSR++W
Sbjct: 288 FGNIFQRKSRVEWRLKGVQSYLERVDSYRHTLLEKELQDEYNHILFQEEMLWYQKSREQW 347
Query: 201 IKLGDVNTKYFSAVVKDKRQHNQILELTALSGHKLSDSDDIKGEIIQFYKGLMGIVASSL 380
+KLGD NT +F A +R+ N+I +L +G SDS+ ++ E ++++K S +
Sbjct: 348 VKLGDKNTAFFHAQTVIRRKWNKIHKLQLPNGISTSDSNILQEEALKYFKKFF--CGSQI 405
Query: 381 PIVHKGIMKIRLVLSHEQQLVMSSPVTKDEIYARLKSIGEDKSPGIDGYNVIFSKKAWSI 560
P L + ++SP+TK E++A L S+ K+PG DG++ IF K+ W I
Sbjct: 406 PYSRFFNEGRHPALDDTGKTSLTSPITKKEVFAALNSMKPYKAPGPDGFHCIFFKQYWHI 465
Query: 561 VKQDIVLVVQEFFETGRLYRAINHSTITLVPNVPHPITVKEFRPIVCCTVVYKIMSKVLA 740
V D+ +V+ F TG AI+++ I L+P + P T K+FRPI C +YKI++KVL
Sbjct: 466 VGDDVFHLVRSAFLTGHFDPAISNTLIALIPKIDSPNTYKDFRPISLCNTLYKIITKVLV 525
Query: 741 ARIQKVIPNIINEARAGFIPRWKIVENIIVAHEL---VKTYNMKHIYLRCMIKIDLMKAY 911
R++ + N+I ++ F+P +N I+ E+ +K K Y+ K+DL KA+
Sbjct: 526 HRLRPFLNNLIGPYQSSFLPGRGTADNSIILQEILHFMKRSKRKKGYV--AFKLDLEKAF 583
Query: 912 DSVEWVYLKQVLEELRFPMKFVNWIMEYVQTVNYSIIVNRDPTTPFNDNKGLRQSDPIAP 1091
D+V W +L L + FP V IM V + NYS++ N + PF GLRQ DP++P
Sbjct: 584 DNVNWDFLNSCLLDFGFPDIIVKLIMHCVSSANYSLLWNGNKMPPFKPTHGLRQGDPLSP 643
Query: 1092 YLFAIAMEYLSRILLGLT*EKTFK-FHPRCFKFHLTHLCFADDLLLFTKGDLPLVEVVHQ 1268
YLF + ME LS + + +++ H ++HL FADD+LLFTK ++ +
Sbjct: 644 YLFILCMEKLSVAIQDAVLQGSWEPIHIINDGPQISHLLFADDVLLFTKAKSSQLQFITN 703
Query: 1269 CFIIFSKAS 1295
F FS+AS
Sbjct: 704 LFDRFSRAS 712
>gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thaliana]
gi|20197043|gb|AAM14892.1| putative reverse transcriptase
[Arabidopsis thaliana]
Length = 1412
Score = 233 bits (594), Expect = 1e-58
Identities = 146/435 (33%), Positives = 236/435 (54%), Gaps = 8/435 (1%)
Frame = +3
Query: 15 YRFKGVTQKIEKARLDL-RNIQDQLARQNS---DSLVVMEKKALLNLEKWSLIEESVFKQ 182
+RF ++++ DL RN L R+ + + L + K+L L +++ES+
Sbjct: 584 FRFSKKLKELKPILKDLSRNNLSDLTRRATYAYEELCRCQTKSLTTLNPHDIVDESL--- 640
Query: 183 KSRDKWIKLGDVNTKYFSAVVKDKRQHNQILELTALSGHKLSDSDDIKGEIIQFYKGLMG 362
+ ++W K++ N I E+ G + + DDIK E ++F+ L+
Sbjct: 641 -AFERW--------------EKERHLLNAIHEVMDPQGTRPPNQDDIKIEAVRFFSDLLS 685
Query: 363 IVASSLPIVH----KGIMKIRLVLSHEQQLVMSSPVTKDEIYARLKSIGEDKSPGIDGYN 530
S + KGI++ R L HEQ L+++ +T+ E+ SI +KSPG DGY
Sbjct: 686 SQPSDFTGISVDELKGILQYRYSL-HEQNLLVAE-ITEAEVMKVFFSIPLNKSPGPDGYT 743
Query: 531 VIFSKKAWSIVKQDIVLVVQEFFETGRLYRAINHSTITLVPNVPHPITVKEFRPIVCCTV 710
V F ++ WS++ Q++ + ++ FF G L + +N + + L+P + +K++RPI CC V
Sbjct: 744 VEFFRETWSVIGQEVTMAIKSFFTYGFLPKGLNSTILALIPKRTYAKEMKDYRPISCCNV 803
Query: 711 VYKIMSKVLAARIQKVIPNIINEARAGFIPRWKIVENIIVAHELVKTYNMKHIYLRCMIK 890
+YK +SK+LA R++ ++P I ++ FI ++EN+++A ELVK Y+ + RC +K
Sbjct: 804 LYKAISKLLANRLKCLLPEFIAPNQSAFISDRLLMENLLLASELVKDYHKDGLSPRCAMK 863
Query: 891 IDLMKAYDSVEWVYLKQVLEELRFPMKFVNWIMEYVQTVNYSIIVNRDPTTPFNDNKGLR 1070
IDL KA+DSV+W +L L L P KF++WI + T ++S+ VN GLR
Sbjct: 864 IDLSKAFDSVQWPFLLNTLAALDIPEKFIHWINLCISTASFSVQVN-----------GLR 912
Query: 1071 QSDPIAPYLFAIAMEYLSRILLGLT*EKTFKFHPRCFKFHLTHLCFADDLLLFTKGDLPL 1250
Q ++PYLF I M LS +L EK F +HPRC LTHLCFADD+++F+ G
Sbjct: 913 QGCSLSPYLFVICMNVLSAMLDKGAVEKRFGYHPRCRNMGLTHLCFADDIMVFSAGSAHS 972
Query: 1251 VEVVHQCFIIFSKAS 1295
+E V F F+ S
Sbjct: 973 LEGVLAIFKDFAAFS 987
>emb|CCA66235.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1380
Score = 233 bits (593), Expect = 2e-58
Identities = 136/428 (31%), Positives = 238/428 (55%), Gaps = 3/428 (0%)
Frame = +3
Query: 21 FKGVTQKIEKARLDLRNIQDQLARQNSDSLVV-MEKKALLNLEKWSLIEESVFKQKSRDK 197
F + I++ ++ + ++ DS + +KKA ++L W +ES + Q+SR K
Sbjct: 286 FGNIEANIKQLEHEINQLDKISNERDLDSFELEKKKKAQVDLWSWMKTKESYWSQQSRIK 345
Query: 198 WIKLGDVNTKYFSAVVKDKRQHNQILELTALSGHKLSDSDDIKGEIIQFYKGLMGIVASS 377
W+K GD NTK+F V ++ N I + ++G K+S+ + IK E +++++ + +
Sbjct: 346 WLKQGDRNTKFFHVVASIRKHRNSITSIE-VNGDKISEPEKIKLEAMKYFRKAFKEESYN 404
Query: 378 LPIVHKGIMKIRLVLSHEQQLVMSSPVTKDEIYARLKSIGEDKSPGIDGYNVIFSKKAWS 557
P++ K L+ Q + +P + +EI + S DK+PG DG+N F KKAW
Sbjct: 405 RPLLEGLDFKH---LTEAQSADLIAPFSHEEIDKAVASCSSDKAPGPDGFNFTFIKKAWD 461
Query: 558 IVKQDIVLVVQEFFETGRLYRAINHSTITLVPNVPHPITVKEFRPIVCCTVVYKIMSKVL 737
++K++I VQEF+ + RL + N + I L+P P ++FRPI VYKI++K+L
Sbjct: 462 VIKEEIYETVQEFWNSSRLPKGCNMAFIALIPKTDSPKGFQDFRPISMVGCVYKIVAKLL 521
Query: 738 AARIQKVIPNIINEARAGFIPRWKIVENIIVAHELVKTYNMKHIYLRCMIKIDLMKAYDS 917
R+QKV+ +++ A++ FI I+++ ++A EL+ + + ++KID KA+DS
Sbjct: 522 TMRLQKVMNSLVGPAQSSFIEGRHILDSALIAGELIDSCK-RWKTSSSLLKIDFHKAFDS 580
Query: 918 VEWVYLKQVLEELRFPMKFVNWIMEYVQTVNYSIIVNRDPTTPFNDNKGLRQSDPIAPYL 1097
V W +L LE++ FP+++ WI V T + S+++N P+ PF KGLRQ DP++P+L
Sbjct: 581 VSWAFLDWTLEKMNFPIQWRQWIQTCVTTASSSVLINGSPSPPFKLQKGLRQGDPLSPFL 640
Query: 1098 FAIAMEYLSRILLGLT*EKTFKFHPRCFK--FHLTHLCFADDLLLFTKGDLPLVEVVHQC 1271
F + +E L+ +L+ F K L+HL +ADD L+F + ++ + +
Sbjct: 641 FVLVVETLN-LLINKAISLGFWEGVEVSKGGLKLSHLQYADDTLIFCAPRIDYLQNIKKV 699
Query: 1272 FIIFSKAS 1295
I+F AS
Sbjct: 700 LILFHLAS 707