BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atropa21_contig00035593
         (2013 letters)

Database: nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006584238.1| PREDICTED: uncharacterized protein LOC102664...   171   3e-50
ref|XP_006582615.1| PREDICTED: uncharacterized protein LOC102665...   147   1e-49
emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulga...   164   7e-48
emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga...   157   3e-47
gb|ABD96948.1| hypothetical protein [Cleome spinosa]                   95   2e-34
ref|XP_006605183.1| PREDICTED: uncharacterized protein LOC102663...   153   3e-34
ref|XP_006579104.1| PREDICTED: uncharacterized protein LOC102661...   150   2e-33
gb|AAC78274.1| putative reverse transcriptase [Arabidopsis thali...    83   4e-31
dbj|BAB09269.1| unnamed protein product [Arabidopsis thaliana]         78   4e-28
ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298...   125   9e-26
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip...    73   2e-25
gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00...    74   5e-25
emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thal...   117   2e-23
dbj|BAB08270.1| non-LTR retroelement reverse transcriptase-like ...   115   7e-23
gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]               113   3e-22
emb|CAB72467.1| putative protein [Arabidopsis thaliana]               113   4e-22
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...   110   2e-21
gb|AAC95175.1| putative non-LTR retroelement reverse transcripta...   110   2e-21
gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]                109   4e-21
gb|AAD15471.1| putative non-LTR retroelement reverse transcripta...   106   3e-20

>ref|XP_006584238.1| PREDICTED: uncharacterized protein LOC102664824 [Glycine max]
          Length = 939

 Score =  171 bits (433), Expect(2) = 3e-50
 Identities = 111/317 (35%), Positives = 173/317 (54%), Gaps = 24/317 (7%)
 Frame = +1

Query: 319  INRKPAAFVEARKGLRQGDLVTSFLFVMVMESLSRLFKQLGKNPNFNFHPKCSRMVLIHL 498
            IN +    +EAR+G+RQGD ++  LF++VME L+R+  QL K PNFN+H KC +M + +L
Sbjct: 455  INGRFTRRLEARRGIRQGDPISPLLFILVMEYLNRILSQLDKIPNFNYHSKCEKMKITNL 514

Query: 499  GFVDNLLLFCRGDTSSVQLIFDQF*CFSKASGLTANAAKSSVYFGGMXXXXXXXVLEILE 678
             F D+LLLF RGD  SVQ++ D+F  F ++ GL  N +K ++Y G +       +L I  
Sbjct: 515  CFADDLLLFSRGDIGSVQIMLDKFNTFLRSMGLHVNPSKCNIYCGSVDINVKEQLLLISG 574

Query: 679  FSKGVQIPGGPFEHIEGILCSIPASTRQAPS*D*VLDYQVSIICWKSLADQIC--VVHCS 852
            F +G      PF ++      IP S+++      +  YQV       L D+I   + H S
Sbjct: 575  FKEGKM----PFRYL-----GIPLSSKKLN----IKHYQV-------LIDKIVGRITHWS 614

Query: 853  SILGS---------SVCVAKESDQSHRSLL*KFFVDR---------W---SIAVKKALLT 969
            + L S         SV  A  +       L KF + R         W   S   +K+ + 
Sbjct: 615  AGLLSYAGRVQLIQSVIFATINFWMQCLPLPKFVIMRINAICRSFLWIGNSNISRKSPIA 674

Query: 970  WSRVCRSETLGGLNVLDISTWNKVAISQLL*NICETKDKLWIKWLHCYYGKIRSLLEEIP 1149
            W +VC  +  GGLN+++++ WNK++I +LL N+C   D LWIKWLH YY + +S+   + 
Sbjct: 675  WEKVCSPKINGGLNIINLAIWNKISILKLLWNVCNKSDNLWIKWLHTYYIRGQSIWSMVL 734

Query: 1150 KQA-SWIIQKILRGRPI 1197
            K++ SWI+  +++ RP+
Sbjct: 735  KKSHSWIMSSMMKLRPL 751



 Score = 57.0 bits (136), Expect(2) = 3e-50
 Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 1/143 (0%)
 Frame = +2

Query: 1247 FPTKQFYLKLRGDFPKVEWRKLVYNIWALPKWIFILRLAAHGILHTRDRLSKWGVTNATV 1426
            F  K+ YL L  +  K+ WR L+ N  A P+ +F L  A H  L ++DRL K+G+     
Sbjct: 763  FKMKKIYLALFEESEKMSWRTLMCNNLARPRALFCLWQACHFRLASKDRLIKFGLNVDAN 822

Query: 1427 CPYVS*LMRLTLISSLYVC-STSEVWQKLLRRQGVHKNSRQWDAAVE*AVQFAKGKTTRA 1603
            C + S +     +   + C     +W  +L    +      W   +    +  KGK  RA
Sbjct: 823  CAFCSSMESHEHL--FFGCIELKTIWTAVLNWLQIIHMPSTWSEELNWITRKCKGKGWRA 880

Query: 1604 EVYRMSLAAAVDHIWKERNMRHF 1672
             + + +    + HIW  RN R F
Sbjct: 881  MLLKCAFTETIYHIWAYRNHRVF 903


>ref|XP_006582615.1| PREDICTED: uncharacterized protein LOC102665746 [Glycine max]
          Length = 506

 Score =  147 bits (372), Expect(2) = 1e-49
 Identities = 98/315 (31%), Positives = 159/315 (50%), Gaps = 24/315 (7%)
 Frame = +1

Query: 319  INRKPAAFVEARKGLRQGDLVTSFLFVMVMESLSRLFKQLGKNPNFNFHPKCSRMVLIHL 498
            +N      + AR+GLRQGD ++  LFV+VME L+R   ++ K+ +FN+HPKC ++ + +L
Sbjct: 13   VNGYKTEIMGARRGLRQGDPISPMLFVIVMECLNRYLYKMQKDGDFNYHPKCDKLKITNL 72

Query: 499  GFVDNLLLFCRGDTSSVQLIFDQF*CFSKASGLTANAAKSSVYFGGMXXXXXXXVLEILE 678
             F D+LLLF RGD  SV ++   +  FSKA+GL  N  K S+   G+       +LE+  
Sbjct: 73   CFADDLLLFSRGDKISVGMMMRAYESFSKATGLLVNPQKCSLLCAGIDAVTKREILEVSG 132

Query: 679  FSKGVQIPGGPFEHIEGILCSIPASTRQAPS*D*VLDYQVSIICWKSLADQIC--VVHCS 852
            F +G      PF+++      +P +++           ++S I +  L D+I   + H +
Sbjct: 133  FQEGQL----PFKYL-----GVPVTSK-----------KLSTIHYSPLIDKIVGKIKHWT 172

Query: 853  SILGS---------SVCVA------------KESDQSHRSLL*KFFVDRWSIAVKKALLT 969
            + L S         SV  A            K   Q   ++   F         +K+ + 
Sbjct: 173  ARLLSYAGRLQLVNSVMFALTNYWLNCFPFPKSVLQKIEAICRIFLWTGGFEGSRKSPVA 232

Query: 970  WSRVCRSETLGGLNVLDISTWNKVAISQLL*NICETKDKLWIKWLHCYYGKIRSLLE-EI 1146
            W ++C   + GGLN++DI  WNK  + +LL N+   +D LW+KW+  YY K   L+  E+
Sbjct: 233  WKQICSPRSCGGLNIIDIDIWNKANLMKLLWNLSSKEDSLWVKWIQAYYVKRSELMHIEM 292

Query: 1147 PKQASWIIQKILRGR 1191
                SWI++ IL+ R
Sbjct: 293  KNTDSWIMKAILKQR 307



 Score = 78.2 bits (191), Expect(2) = 1e-49
 Identities = 47/141 (33%), Positives = 73/141 (51%), Gaps = 1/141 (0%)
 Frame = +2

Query: 1259 QFYLKLRGDFPKVEWRKLVYNIWALPKWIFILRLAAHGILHTRDRLSKWGVTNATVCPYV 1438
            + Y KL+    + EW+ L+Y   A P+  FIL LA HG L T+DRL K+G+ +   C + 
Sbjct: 329  KLYRKLQDCGQRKEWKNLLYGNTARPRANFILWLACHGRLSTKDRLCKYGMIDDKSCCFC 388

Query: 1439 S*LMRLTLISSLYVCSTSE-VWQKLLRRQGVHKNSRQWDAAVE*AVQFAKGKTTRAEVYR 1615
            S     ++    +VC  S+ VW ++L+   +  +   W   +       KGK TRA V +
Sbjct: 389  S--EEESMNHLFFVCDNSKRVWMEVLQWVQIRHDPSDWPNELHWLTHHTKGKGTRAAVLK 446

Query: 1616 MSLAAAVDHIWKERNMRHFQQ 1678
            M++A  +  IW  RN + F Q
Sbjct: 447  MAIAETIYEIWNIRNNKIFGQ 467


>emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1110

 Score =  164 bits (416), Expect(2) = 7e-48
 Identities = 107/310 (34%), Positives = 169/310 (54%), Gaps = 8/310 (2%)
 Frame = +1

Query: 286  CTIIMSYFSVIINRKPAAFVEARKGLRQGDLVTSFLFVMVMESLSRLFKQLGKNPNFNFH 465
            C   +SY SV++N  P    +ARKGLRQGD ++ FLF + ME LSR  ++L  +P+FNFH
Sbjct: 617  CVSTVSY-SVLVNGIPTQPFQARKGLRQGDPMSPFLFALCMEYLSRCLEELKGSPDFNFH 675

Query: 466  PKCSRMVLIHLGFVDNLLLFCRGDTSSVQLIFDQF*CFSKASGLTANAAKSSVYFGGMXX 645
            PKC R+ + HL F D+LL+FCR D SS+  +   F  FS ASGL A+  KS++YF G+  
Sbjct: 676  PKCERLNITHLMFADDLLMFCRADKSSLDHMNVAFQKFSHASGLAASHEKSNIYFCGVDD 735

Query: 646  XXXXXVLEILEFSKGVQIPGGPFEHIEGILCSIPASTRQAPS*D*VLDYQVSIICWKSLA 825
                 + + +     +Q+   PF ++   L S   +  Q      ++  +      K L+
Sbjct: 736  ETARELADYVH----MQLGELPFRYLGVPLTSKKLTYAQCKPLVEMITNRAQTWMAKLLS 791

Query: 826  DQICVVHCSSILGSS-------VCVAKESDQSHRSLL*KFFVDRWSIAVKKALLTWSRVC 984
                +    SIL S          ++K+  Q+   +  KF     +   KKA + W+ + 
Sbjct: 792  YAGRLQLIKSILSSMQNYWAHIFPLSKKVIQAVEKVCRKFLWTGKTEETKKAPVAWATIQ 851

Query: 985  RSETLGGLNVLDISTWNKVAISQLL*NICETKDKLWIKWLHCYYGKIRSLLE-EIPKQAS 1161
            R ++ GG NV+++  WN+ A+ +LL  I   +DKLW++W+H YY K + +L   I  Q +
Sbjct: 852  RPKSRGGWNVINMKYWNRAAMLKLLWAIEFKRDKLWVRWIHSYYIKRQDILTVNISNQTT 911

Query: 1162 WIIQKILRGR 1191
            WI++KI++ R
Sbjct: 912  WILRKIVKAR 921



 Score = 55.5 bits (132), Expect(2) = 7e-48
 Identities = 44/162 (27%), Positives = 74/162 (45%), Gaps = 3/162 (1%)
 Frame = +2

Query: 1244 QFPTKQFYLKLRGDFPKVEWRKLVYNIWALPKWIFILRLAAHGILHTRDRLSKWGV---T 1414
            +F  K+ Y K+  +  +V WR+L+ N +A PK  FIL +  H  L T DR+S+WGV    
Sbjct: 938  KFSMKKAYKKISENGERVRWRRLICNNYATPKSKFILWMMLHERLPTVDRISRWGVQCDL 997

Query: 1415 NATVCPYVS*LMRLTLISSLYVCSTSEVWQKLLRRQGVHKNSRQWDAAVE*AVQFAKGKT 1594
            N  +C      ++    S  Y   ++ VW K+        +       +      A+ K 
Sbjct: 998  NYRLCRNDGETIQHLFFSCSY---SAGVWSKICYIMRFPNSGVSHQEIISSVCGQARKK- 1053

Query: 1595 TRAEVYRMSLAAAVDHIWKERNMRHFQQTEQTIDRLVQEIHF 1720
             + ++  M     V  IWK+RN R F    +  + ++++I F
Sbjct: 1054 -KGKLIVMLYTEFVYAIWKQRNKRTFTGENKDENEVLRKILF 1094


>emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1114

 Score =  157 bits (398), Expect(2) = 3e-47
 Identities = 109/314 (34%), Positives = 166/314 (52%), Gaps = 10/314 (3%)
 Frame = +1

Query: 286  CTIIMSYFSVIINRKPAAFVEARKGLRQGDLVTSFLFVMVMESLSRLFKQLGKNPNFNFH 465
            C   +SY S+++N  P+   +A+KGLRQGD ++ FLF + ME LSR    + K+P FNFH
Sbjct: 620  CVKTVSY-SILLNGIPSIPFDAQKGLRQGDPLSPFLFALSMEYLSRCMGNMCKDPEFNFH 678

Query: 466  PKCSRMVLIHLGFVDNLLLFCRGDTSSVQLIFDQF*CFSKASGLTANAAKSSVYFGGMXX 645
            PKC R+ L HL F D+LL+F R D SS+  I   F  FSKASGL A+  KS +YFGG+  
Sbjct: 679  PKCERIKLTHLMFADDLLMFARADASSISKIMAAFNSFSKASGLQASIEKSCIYFGGVCH 738

Query: 646  XXXXXVLEILEFSKGVQIPGG--PFEHIEGILCSIPASTRQA-PS*D*VLD-YQVSIICW 813
                   E  + +  +Q+P G  PF ++   L S   +  Q  P  D +    Q  +   
Sbjct: 739  E------EAEQLADRIQMPIGSLPFRYLGVPLASKKLNFSQCKPLIDKITTRAQGWVAHL 792

Query: 814  KSLADQICVV-----HCSSILGSSVCVAKESDQSHRSLL*KFFVDRWSIAVKKALLTWSR 978
             S A ++ +V        +  G    + K+  ++  +   KF          KA + W  
Sbjct: 793  LSYAGRLQLVKTILYSMQNYWGQIFPLPKKLIKAVETTCRKFLWTGTVDTSYKAPVAWDF 852

Query: 979  VCRSETLGGLNVLDISTWNKVAISQLL*NICETKDKLWIKWLHCYYGKIRSLLE-EIPKQ 1155
            + + ++ GGLNV ++  WNK AI +LL  I   +DKLW++W++ YY K +++    +   
Sbjct: 853  LQQPKSTGGLNVTNMVLWNKAAILKLLWAITFKQDKLWVRWVNAYYIKRQNIENVTVSSN 912

Query: 1156 ASWIIQKILRGRPI 1197
             SWI++KI   R +
Sbjct: 913  TSWILRKIFESREL 926



 Score = 60.5 bits (145), Expect(2) = 3e-47
 Identities = 48/160 (30%), Positives = 77/160 (48%), Gaps = 1/160 (0%)
 Frame = +2

Query: 1247 FPTKQFYLKLRGDFPKVEWRKLVYNIWALPKWIFILRLAAHGILHTRDRLSKWGVTNATV 1426
            F  K+ Y  L+ D+  V W++L+ N  A PK  FIL LA    L T +R+S+W    + +
Sbjct: 942  FSIKKTYKLLQEDYENVVWKRLICNNKATPKSQFILWLAMLNRLATAERVSRWNRDVSPL 1001

Query: 1427 CPYVS*LMRLTLISSLYVCSTS-EVWQKLLRRQGVHKNSRQWDAAVE*AVQFAKGKTTRA 1603
            C      +  T+    + C  S E+W K+L    +   +    A  E A++ A+    R 
Sbjct: 1002 CKMCGNEIE-TIQHLFFNCIYSKEIWGKVLLYLNLQPQA-DAQAKKELAIKKARSTKDRN 1059

Query: 1604 EVYRMSLAAAVDHIWKERNMRHFQQTEQTIDRLVQEIHFR 1723
            ++Y M    +V  IW  RN + F+  E   ++ V+ I FR
Sbjct: 1060 KLYVMMFTESVYAIWLLRNAKVFRGIEINQNQAVKSIIFR 1099


>gb|ABD96948.1| hypothetical protein [Cleome spinosa]
          Length = 539

 Score = 94.7 bits (234), Expect(2) = 2e-34
 Identities = 45/128 (35%), Positives = 75/128 (58%)
 Frame = +1

Query: 307 FSVIINRKPAAFVEARKGLRQGDLVTSFLFVMVMESLSRLFKQLGKNPNFNFHPKCSRMV 486
           FSV IN + A + + R+GLRQGD ++ +LF+M ME LSR+  +       + HPKC   V
Sbjct: 85  FSVSINGELAGYFKGRRGLRQGDPLSPYLFIMSMEVLSRMLDRCAAESRLSLHPKCHSPV 144

Query: 487 LIHLGFVDNLLLFCRGDTSSVQLIFDQF*CFSKASGLTANAAKSSVYFGGMXXXXXXXVL 666
           + HL F D++++F  G+T S+  + +    FS+ASGL  N  K+ ++  G+       + 
Sbjct: 145 ITHLAFADDIMIFTSGETRSLLEVKNTLDSFSRASGLYLNTEKTEIFLRGLNGTEASTLC 204

Query: 667 EILEFSKG 690
            ++ F++G
Sbjct: 205 AVIGFTRG 212



 Score = 80.5 bits (197), Expect(2) = 2e-34
 Identities = 38/82 (46%), Positives = 53/82 (64%)
 Frame = +2

Query: 695 RYLGVPLST*RVSYVQYQPLLDKLLHRIKSWTTKFLSYAGRA*LIKSVLFTVQVFWAQVF 874
           RYLGV LS  R++   YQPLLD++  +I SWTT++LSYAGR  L+ +V++ +   W  +F
Sbjct: 217 RYLGVSLSPVRLTKSDYQPLLDRVKAKINSWTTRYLSYAGRLQLVGTVIYGMVNAWGMIF 276

Query: 875 VLPKRVIKATEASCRSFLWTDG 940
           +LPK   K  +  C  FLW  G
Sbjct: 277 MLPKFFTKQVDRLCAGFLWGAG 298


>ref|XP_006605183.1| PREDICTED: uncharacterized protein LOC102663533 [Glycine max]
          Length = 514

 Score =  153 bits (386), Expect = 3e-34
 Identities = 101/328 (30%), Positives = 169/328 (51%), Gaps = 12/328 (3%)
 Frame = +1

Query: 247  GCPKKIY**RL*FCTIIMSYFSVIINRKPAAFVEARKGLRQGDLVTSFLFVMVMESLSRL 426
            G PKK     +   T +   F+  IN + +  +E + G+ QGD ++  LFV++ME  +R+
Sbjct: 94   GLPKKFIGWVMKVITTVNYRFN--INGELSNVLETKIGIWQGDPISPLLFVLMMEYFNRI 151

Query: 427  FKQLGKNPNFNFHPKCSRMVLIHLGFVDNLLLFCRGDTSSVQLIFDQF*CFSKASGLTAN 606
              ++ +NP+FN H +C R+ + HL F D++ L CRGD  S+++I   F  FSK++GL  N
Sbjct: 152  MVKMQRNPSFNHHSQCERLGITHLSFADDVFLLCRGDKKSIKMIIKAFSFFSKSTGLQIN 211

Query: 607  AAKSSVYFGGMXXXXXXXVLEILEFSKG---VQIPGGPF-------EHIEGILCSIPAST 756
             AK  V+ GG+       + +I  F +G   V+  G P         H   ++  I    
Sbjct: 212  PAKCKVFCGGLNCDSIQVITKITGFEEGTLPVRYLGVPLSCKKLNVHHYLPLVEKIVGKI 271

Query: 757  RQAPS*D*VLDYQVSIICWKSLADQICVVHCSSILGSSVCVAKESDQSHRSLL*KFFVDR 936
            R   S   +L     I   +S+   I   +  S+      V ++ D   RS     F+  
Sbjct: 272  RHWSS--KLLSIAGRIQLVRSIITAI-AQYWMSVFPMPKKVIQKIDSICRS-----FIWS 323

Query: 937  WSIAVK-KALLTWSRVCRSETLGGLNVLDISTWNKVAISQLL*NICETKDKLWIKWLHCY 1113
             S  VK K+L+ W +VC+    GGLN++++  WN  A+ + L NIC  +D LW+KW+H Y
Sbjct: 324  GSAEVKRKSLVAWKQVCKPARCGGLNLINLELWNVTAMLKCLWNICSKEDNLWVKWIHAY 383

Query: 1114 YGKIRSLLE-EIPKQASWIIQKILRGRP 1194
            + K  +++   I   ++WI++ +++ RP
Sbjct: 384  FLKGDNVMSATIKSNSTWILKSVMKQRP 411


>ref|XP_006579104.1| PREDICTED: uncharacterized protein LOC102661523 [Glycine max]
          Length = 947

 Score =  150 bits (379), Expect = 2e-33
 Identities = 90/305 (29%), Positives = 156/305 (51%), Gaps = 22/305 (7%)
 Frame = +1

Query: 343  VEARKGLRQGDLVTSFLFVMVMESLSRLFKQLGKNPNFNFHPKCSRMVLIHLGFVDNLLL 522
            + A++G+RQGD ++  LFV++ME L+RL  +L  + NFN H KC ++ + HL F D++LL
Sbjct: 463  IAAKRGIRQGDPISPLLFVVMMEYLNRLLVKLQLDLNFNHHAKCEKLGITHLTFADDVLL 522

Query: 523  FCRGDTSSVQLIFDQF*CFSKASGLTANAAKSSVYFGGMXXXXXXXVLEILEFSKGVQIP 702
            FCRGD  SV+++      FS  +GL  N  K  +YFGG+       + +I  + +G Q+P
Sbjct: 523  FCRGDVMSVEMMLHVINKFSATTGLVVNPNKCRIYFGGVDGTTKNKIQQISSYEEG-QLP 581

Query: 703  GGPFEHIEGILCSIPASTRQAPS*D*VLDYQVSII--------CWKS----LADQICVVH 846
                         +P ++++       + Y + +I         W S    +  ++ +V+
Sbjct: 582  VR--------YLGVPLTSKKLN-----IKYYLPLIDKITTRIRHWTSKLLNMTGRVQMVN 628

Query: 847  CS---------SILGSSVCVAKESDQSHRSLL*KFFVDRWSIAVKKALLTWSRVCRSETL 999
            C+           L   + V K+ D   RS    F   R +   +K+ + W+ VCR +  
Sbjct: 629  CTITAIVQFWMQCLPIPMSVIKKIDSMCRS----FVWSRSTEITRKSPIAWNSVCRPKGQ 684

Query: 1000 GGLNVLDISTWNKVAISQLL*NICETKDKLWIKWLHCYYGKIRSLLEE-IPKQASWIIQK 1176
            GGLN+ ++  WN + +   L N+C+  D LW+KW+H +Y K  S++   +    SW+++ 
Sbjct: 685  GGLNIFNLKVWNHITVLNCLWNLCKKVDNLWVKWIHAHYIKNSSVMNTMVTNNFSWVLKN 744

Query: 1177 ILRGR 1191
            +L  R
Sbjct: 745  VLSQR 749



 Score =  102 bits (253), Expect = 8e-19
 Identities = 88/369 (23%), Positives = 159/369 (43%), Gaps = 24/369 (6%)
 Frame = +2

Query: 695  RYLGVPLST*RVSYVQYQPLLDKLLHRIKSWTTKFLSYAGRA*LIKSVLFTVQVFWAQVF 874
            RYLGVPL++ +++   Y PL+DK+  RI+ WT+K L+  GR  ++   +  +  FW Q  
Sbjct: 583  RYLGVPLTSKKLNIKYYLPLIDKITTRIRHWTSKLLNMTGRVQMVNCTITAIVQFWMQCL 642

Query: 875  VLPKRVIKATEASCRSFLWTDGA*LSKRLS*P-----------GVGYADLKLLEG*MS*I 1021
             +P  VIK  ++ CRSF+W+    ++++               G+   +LK+       I
Sbjct: 643  PIPMSVIKKIDSMCRSFVWSRSTEITRKSPIAWNSVCRPKGQGGLNIFNLKVWNH----I 698

Query: 1022 SVPGTR*PLASCCE------IFARQKINSGLNGFIVTMGK*GVCWRKSQNKHHGLFKKS* 1183
            +V      L    +      I A    NS +   +VT            N    + K   
Sbjct: 699  TVLNCLWNLCKKVDNLWVKWIHAHYIKNSSVMNTMVT------------NNFSWVLKNVL 746

Query: 1184 GADQYFVEVGFALTEIHKLTQFPTKQFYLKLRGDFPKVEWRKLVYNIWALPKWIFILRLA 1363
               +Y   +     E+    +F  K+ Y K+  +  +V W  L+    A P+ I    LA
Sbjct: 747  SQREYIHTLQPVWDELLNSERFKMKKAYDKMM-EADRVHWSGLMRKNCARPRAIHTTWLA 805

Query: 1364 AHGILHTRDRLSKWGVTNATVCPYVS*LMRLTLISSLYVCSTS-EVWQKLLRRQGVHKNS 1540
             HG L T+DRL ++G+    +      +   T    L+ C  + ++W  +L R G+    
Sbjct: 806  CHGRLGTKDRLVRFGMITDKIWSLCKEVEE-TQNHILFSCKVATDIWSNVLNRIGIDHVP 864

Query: 1541 RQWDAAVE*AVQFAKGKTTRAEVYRMSLAAAVDHIWKERNMRHF------QQTEQTIDRL 1702
            ++W   ++  +     K  RA + ++S+   +  IW  RN + F        ++   D +
Sbjct: 865  QEWPLELDWLLNLTNRKGWRAYLLKLSVTETIYGIWINRNSKIFGDNTYRNTSKDVSDGI 924

Query: 1703 VQEIHFRGY 1729
            ++ I +R +
Sbjct: 925  IENIVYRDW 933


>gb|AAC78274.1| putative reverse transcriptase [Arabidopsis thaliana]
          Length = 543

 Score = 83.2 bits (204), Expect(2) = 4e-31
 Identities = 36/80 (45%), Positives = 54/80 (67%)
 Frame = +2

Query: 695 RYLGVPLST*RVSYVQYQPLLDKLLHRIKSWTTKFLSYAGRA*LIKSVLFTVQVFWAQVF 874
           RYLGVPL + ++    YQPL+D++  R  SWT + LS+AGR  L+KSV+++   FWA +F
Sbjct: 311 RYLGVPLMSQKMKKHDYQPLVDRINSRFTSWTARHLSFAGRLQLLKSVIYSTINFWASIF 370

Query: 875 VLPKRVIKATEASCRSFLWT 934
           +LP + +   E  C +FLW+
Sbjct: 371 ILPNQCLHKLEQMCNAFLWS 390



 Score = 80.9 bits (198), Expect(2) = 4e-31
 Identities = 42/110 (38%), Positives = 61/110 (55%)
 Frame = +1

Query: 307 FSVIINRKPAAFVEARKGLRQGDLVTSFLFVMVMESLSRLFKQLGKNPNFNFHPKCSRMV 486
           +S+  N +   F   +KG+RQGD ++S LFV+VM+ L+R          F  HPKC   +
Sbjct: 179 YSIAYNGELIGFFVGKKGIRQGDPMSSHLFVLVMDILARSLDLGAVEGRFVLHPKCLAPM 238

Query: 487 LIHLGFVDNLLLFCRGDTSSVQLIFDQF*CFSKASGLTANAAKSSVYFGG 636
           + HL F D++L+FC G  SS+  I D    F K SGL  N  K+++   G
Sbjct: 239 ITHLSFADDILVFCDGSLSSLVAILDILDVFKKGSGLGINLQKTALLLDG 288


>dbj|BAB09269.1| unnamed protein product [Arabidopsis thaliana]
          Length = 422

 Score = 78.2 bits (191), Expect(2) = 4e-28
 Identities = 43/109 (39%), Positives = 59/109 (54%)
 Frame = +1

Query: 307 FSVIINRKPAAFVEARKGLRQGDLVTSFLFVMVMESLSRLFKQLGKNPNFNFHPKCSRMV 486
           FS+ +N + A F   +KGLRQGD ++ +LF++VM+ LS L  Q      F  HP C    
Sbjct: 28  FSISVNGELAGFFPGQKGLRQGDPISPYLFIIVMKVLSNLLSQATYEGKFRLHPLCDSPR 87

Query: 487 LIHLGFVDNLLLFCRGDTSSVQLIFDQF*CFSKASGLTANAAKSSVYFG 633
           L HL F D LL+F      S+  I +    F + SGL  N AK  ++FG
Sbjct: 88  LTHLLFADALLIFSDEAKHSLTSISEVMKHFKELSGLDVNQAKLELFFG 136



 Score = 75.9 bits (185), Expect(2) = 4e-28
 Identities = 33/80 (41%), Positives = 52/80 (65%)
 Frame = +2

Query: 692 SRYLGVPLST*RVSYVQYQPLLDKLLHRIKSWTTKFLSYAGRA*LIKSVLFTVQVFWAQV 871
           +RYLG+PL+  R+ Y   QP ++K+ +++ +WT  FLS+AG   LI SV++ +  FW  V
Sbjct: 159 TRYLGLPLNQARICYTTLQPFIEKITNKLHAWTVGFLSFAGNIKLISSVIYGMVNFWRAV 218

Query: 872 FVLPKRVIKATEASCRSFLW 931
           F L KR+    ++ C +FLW
Sbjct: 219 FNLSKRLYAKVDSLCATFLW 238


>ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298394 [Fragaria vesca
            subsp. vesca]
          Length = 958

 Score =  125 bits (313), Expect = 9e-26
 Identities = 115/414 (27%), Positives = 184/414 (44%), Gaps = 21/414 (5%)
 Frame = +1

Query: 307  FSVIINRKPAAFVEARKGLRQGDLVTSFLFVMVMESLSRLF-KQLGKNPNFNFHPKCSRM 483
            FSV +N + A F   R+GLRQGD ++ +LFV+ ME LS    +++  +P F +H +C ++
Sbjct: 459  FSVCVNGELAGFFARRRGLRQGDPLSPYLFVIAMEVLSLCIQRRINCSPCFRYHWRCDQL 518

Query: 484  VLIHLGFVDNLLLFCRGDTSSVQLIFDQF*CFSKASGLTANAAKSSVYFGGMXXXXXXXV 663
             L HL F D+LL+FC GD +SV+ + D F  F   S L AN ++S ++  G+       V
Sbjct: 519  NLSHLCFADDLLMFCNGDENSVRTLHDAFSNFESLSSLKANVSESKIFLAGVDGNSSDSV 578

Query: 664  LEILEFSKG---VQIPGGP-------FEHIEGILCSIPASTRQAPS*D*VLDYQVSIICW 813
            L++  FS G   V+  G P        +    +L  I   TR     + VL +   +   
Sbjct: 579  LQVTNFSLGTCPVRYLGIPLITSKLRMQDCSPLLDRI--ETRIKSWENKVLSFAGRLQLI 636

Query: 814  KSLADQICVVHCSSILGSSVCVAKESDQSHRSLL*KFFVDRWS------IAVKKALLTWS 975
            +S+   I V   S ++     V K+ ++  R  L       W+       A K A   WS
Sbjct: 637  QSVLSSIQVYWASHLILPKK-VLKDIEKRLRCFL-------WAGNCSGRAATKVA---WS 685

Query: 976  RVCRSETLGGLNVLDISTWNKVAISQLL*NICETKDKLWIKWLHCYYGKIRSLLE-EIPK 1152
             +C  +  GGL + D+  WNK  +   + N+  +    W  W+  Y  K  S     +P 
Sbjct: 686  EICLPKCEGGLGIKDLHCWNKALMISHIWNLVSSSSNFWTDWVKVYLLKGNSFWNAPLPS 745

Query: 1153 QASWIIQKILRGRPIFC*SWFCINRDPQVDSIPYKAILP--QASRRFP*G*MEETGI*YM 1326
              SW  +K+L+ R + C  +  I  D +  S+ +    P    + R+    + E+G+   
Sbjct: 746  ICSWNWRKLLKIRELCCSFFVNIIGDGRATSLWFDNWHPLGPLTLRWSSNIIGESGLSKS 805

Query: 1327 GFAQMDFHP*VGCPWN-FTYTR*VEQMGCH*CHSLSLCELVDETHSHLFFVCMF 1485
                 +        WN    +R +            L   V ETH+HLFF C +
Sbjct: 806  AMLTPNGFYSTSSAWNTLRPSRFIVPW-------YRLVWFVAETHNHLFFDCAY 852


>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
           72.31) [Arabidopsis thaliana]
          Length = 928

 Score = 72.8 bits (177), Expect(2) = 2e-25
 Identities = 33/80 (41%), Positives = 54/80 (67%)
 Frame = +2

Query: 695 RYLGVPLST*RVSYVQYQPLLDKLLHRIKSWTTKFLSYAGRA*LIKSVLFTVQVFWAQVF 874
           RYLG+PL + R++     PL+++L  +I++WT++FLS+AGR  LI S L+++  FW   F
Sbjct: 658 RYLGLPLVSKRLTASDCLPLIEQLRKKIEAWTSRFLSFAGRLNLISSTLWSICNFWMAAF 717

Query: 875 VLPKRVIKATEASCRSFLWT 934
            LP+  I+  +  C +FLW+
Sbjct: 718 RLPRACIREIDKLCSAFLWS 737



 Score = 72.0 bits (175), Expect(2) = 2e-25
 Identities = 41/133 (30%), Positives = 68/133 (51%)
 Frame = +1

Query: 292 IIMSYFSVIINRKPAAFVEARKGLRQGDLVTSFLFVMVMESLSRLFKQLGKNPNFNFHPK 471
           I  + FSV +N + A    + + LRQG  ++ +LFV+ M+ LS++  +      F +HPK
Sbjct: 521 ITTASFSVQVNGELAGVFSSARELRQGCSLSPYLFVISMDVLSKMLDKAVGARQFGYHPK 580

Query: 472 CSRMVLIHLGFVDNLLLFCRGDTSSVQLIFDQF*CFSKASGLTANAAKSSVYFGGMXXXX 651
           C  + L HL F D+L++   G   S+  I      F+K SGL  +  KS++Y  G+    
Sbjct: 581 CRAIGLTHLSFADDLMILSDGKVRSIDGIVKVLYEFAKWSGLKISMEKSTMYLAGVQASV 640

Query: 652 XXXVLEILEFSKG 690
              +++   F  G
Sbjct: 641 YQEIVQKFSFDVG 653


>gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00078 [Arabidopsis
           thaliana]
          Length = 1253

 Score = 73.6 bits (179), Expect(2) = 5e-25
 Identities = 39/111 (35%), Positives = 63/111 (56%)
 Frame = +1

Query: 307 FSVIINRKPAAFVEARKGLRQGDLVTSFLFVMVMESLSRLFKQLGKNPNFNFHPKCSRMV 486
           FSV +N     F ++ +GLRQG+ ++ FLFV+ ME  S L     +    ++HPK S + 
Sbjct: 585 FSVCVNGNTGGFFKSTRGLRQGNPLSPFLFVLAMEVFSSLLNSRFQAGYIHYHPKTSPLS 644

Query: 487 LIHLGFVDNLLLFCRGDTSSVQLIFDQF*CFSKASGLTANAAKSSVYFGGM 639
           + HL F D++++F  G +SS+  I +    F+  SGL  N  K+ +Y  G+
Sbjct: 645 ISHLMFADDIMVFFDGGSSSLHGISEALEDFAFWSGLVLNREKTHLYLAGL 695



 Score = 70.1 bits (170), Expect(2) = 5e-25
 Identities = 32/70 (45%), Positives = 44/70 (62%)
 Frame = +2

Query: 725 RVSYVQYQPLLDKLLHRIKSWTTKFLSYAGRA*LIKSVLFTVQVFWAQVFVLPKRVIKAT 904
           ++   +Y PLL+KL  R +SW+ K LS+AGR  LI SV+  +  FW   F+LPK  +K  
Sbjct: 706 KLRIAEYGPLLEKLAKRFRSWSVKCLSFAGRVQLIASVISGIINFWISTFILPKGCVKRI 765

Query: 905 EASCRSFLWT 934
           EA C  FLW+
Sbjct: 766 EALCARFLWS 775


>emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thaliana]
            gi|7267919|emb|CAB78261.1| putative reverse transcriptase
            [Arabidopsis thaliana]
          Length = 662

 Score =  117 bits (292), Expect = 2e-23
 Identities = 91/316 (28%), Positives = 145/316 (45%), Gaps = 21/316 (6%)
 Frame = +1

Query: 307  FSVIINRKPAAFVEARKGLRQGDLVTSFLFVMVMESLSRLFKQLGKNPNFNFHPKCSRMV 486
            FSV +NR+ A +  + +GLRQG  +T +LFV+VM+ LS+   +      F +HPKC  + 
Sbjct: 156  FSVQVNRELAGYFNSLRGLRQGCSLTPYLFVIVMDVLSKKLDRAAGLRKFGYHPKCKNLG 215

Query: 487  LIHLGFVDNLLLFCRGDTSSVQLIFDQF*CFSKASGLTANAAKSSVYFGGMXXXXXXXVL 666
            L HL F D++++   G   S++ I + F  F+K SGL  + AK+++YF G+         
Sbjct: 216  LTHLSFADDIMVLTDGKLRSLEGIVEVFDSFAKQSGLKISMAKTTIYFAGISKSVCKEFE 275

Query: 667  EILEFSKGVQIPGGPFEHIEGILCSIPASTRQAPS*D-----------------*VLDYQ 795
            +   F+ G ++P          LC +P  T++  S D                   L Y 
Sbjct: 276  DQFHFAVG-RLP-------VRYLC-LPLVTKRFTSQDYSPLLEQIKRRIGTWTARFLSYA 326

Query: 796  VSIICWKSLADQICVVHCSSILGSSVCVAKESDQSHRSLL*KFFVDRWS---IAVKKALL 966
              +    S+   IC    S+      CV +E D+   + L       WS   ++  KA +
Sbjct: 327  GRLNLVSSVLWSICNFWLSAFRLPRECV-REIDKLCSAFL-------WSGPELSTNKAKI 378

Query: 967  TWSRVCRSETLGGLNVLDISTWNKVAISQLL*NICETKDKLWIKWLHCYYGKIRSLLE-E 1143
             W  VCR +  GGL +  I   N V   +L+  I    D LW++W+  Y  K  +     
Sbjct: 379  AWETVCRPKREGGLGLQSIKEANDVCCLKLIWRIVSQGDSLWVQWIRTYLLKRNTFWSFR 438

Query: 1144 IPKQASWIIQKILRGR 1191
               Q SW+ +K+L+ R
Sbjct: 439  SASQGSWMWKKLLKYR 454


>dbj|BAB08270.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 489

 Score =  115 bits (288), Expect = 7e-23
 Identities = 88/317 (27%), Positives = 143/317 (45%), Gaps = 22/317 (6%)
 Frame = +1

Query: 307  FSVIINRKPAAFVEARKGLRQGDLVTSFLFVMVMESLSRLFKQLGKNPNFNFHPKCSRMV 486
            F V +N + A +  + +GLRQG  ++ +LFV+ M  LS+L  +      F +HP+C +M 
Sbjct: 20   FLVQVNGELAGYFNSTRGLRQGCSLSPYLFVVSMNVLSKLLDKATGQRRFGYHPRCKQMG 79

Query: 487  LIHLGFVDNLLLFCRGDTSSVQLIFDQF*CFSKASGLTANAAKSSVYFGGMXXXXXXXVL 666
            L HL F D+L++   G   S++ I + F  F+K SGL  +  KS+VYF G+       V+
Sbjct: 80   LTHLSFADDLMVLSDGKVRSIEGIVEVFETFAKCSGLRISMEKSTVYFAGLSHTSPQEVM 139

Query: 667  EILEFSKGVQIPGGPFEHIEGILCSIPASTRQAPS*D*V-----------------LDYQ 795
                F+ G      P  ++      +P  T+Q  S D +                 L Y 
Sbjct: 140  AHFPFAVGTL----PVRYL-----GLPLVTKQLSSTDYLPLIEHIKKKIGSWSARFLSYA 190

Query: 796  VSIICWKSLADQICVVHCSSILGSSVCVAKESDQSHRSLL*KFFVDRWS---IAVKKALL 966
              +    S+   IC     +      C+ +E D+   + L       WS   +   KA +
Sbjct: 191  GRLNLISSVLWSICNFWMGAFRLPRECI-REIDKMCSAYL-------WSGGDLNTSKAKI 242

Query: 967  TWSRVCRSETLGGLNVLDISTWNKVAISQLL*NICETKDKLWIKWLHCYYGKIRSL--LE 1140
             W+ VC+ +  GGL +  +   N V+  +L+  I    D LW+KW+H    K  S   + 
Sbjct: 243  AWTDVCKPKDEGGLGLRSLKEANDVSCLKLIWRIISHADSLWVKWIHATLLKQVSFWAVR 302

Query: 1141 EIPKQASWIIQKILRGR 1191
            E     SW+ +K+L+ R
Sbjct: 303  ENTSLGSWMWKKVLKFR 319


>gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]
          Length = 872

 Score =  113 bits (283), Expect = 3e-22
 Identities = 90/324 (27%), Positives = 151/324 (46%), Gaps = 22/324 (6%)
 Frame = +1

Query: 292  IIMSYFSVIINRKPAAFVEARKGLRQGDLVTSFLFVMVMESLSRLFKQLGKNPNFNFHPK 471
            I  + FSV +N     + ++++GLRQG  ++ +LFV+ M+ LS++  +      F FHPK
Sbjct: 280  ITTASFSVQVNGDLVGYFQSKRGLRQGCSLSPYLFVICMDVLSKMLDKAAGVRKFGFHPK 339

Query: 472  CSRMVLIHLGFVDNLLLFCRGDTSSVQLIFDQF*CFSKASGLTANAAKSSVYFGGMXXXX 651
            C R+ L HL F D+L++   G T S++ I + F  F K SGL  +  KS++Y  G+    
Sbjct: 340  CQRLGLTHLSFADDLMVLSDGKTRSIEGILEVFDEFCKRSGLRISLEKSTLYMAGVSPII 399

Query: 652  XXXVLEILEFSKGVQIPGGPFEHIEGILCSIPASTRQAPS*D---*VLDYQVSIICW--- 813
               +     F  G Q+P             +P  T++  S D    +   +  I  W   
Sbjct: 400  KQEIAAKFLFDVG-QLPVR--------YLGLPLVTKRLTSADYSPLLEQIKKRIATWTFR 450

Query: 814  -----------KSLADQICVVHCSSILGSSVCVAKESDQSHRSLL*KFFVDRWS---IAV 951
                       KS+   IC    ++      C+ +E D+   S L       WS   ++ 
Sbjct: 451  FFSFAGRFNLIKSVLWSICNFWLAAFRLPRQCI-REIDKLCSSFL-------WSGSEMSS 502

Query: 952  KKALLTWSRVCRSETLGGLNVLDISTWNKVAISQLL*NICETKDKLWIKWLHCYYGKIRS 1131
             KA ++W  VC+ +  GGL + ++   N V+  +L+  I    + LW KW+  Y  + +S
Sbjct: 503  HKAKISWDIVCKPKAEGGLGLRNLKEANDVSCLKLVWRIISNSNSLWTKWVAEYLIRKKS 562

Query: 1132 L--LEEIPKQASWIIQKILRGRPI 1197
            +  L++     SWI +KIL+ R +
Sbjct: 563  IWSLKQSTSMGSWIWRKILKIRDV 586


>emb|CAB72467.1| putative protein [Arabidopsis thaliana]
          Length = 762

 Score =  113 bits (282), Expect = 4e-22
 Identities = 89/317 (28%), Positives = 149/317 (47%), Gaps = 18/317 (5%)
 Frame = +1

Query: 307  FSVIINRKPAAFVEARKGLRQGDLVTSFLFVMVMESLSRLFKQLGKNPNFNFHPKCSRMV 486
            FSV +N + A F ++ +GLRQG  ++ +LFV+ M+ LS+L  ++       +HP C RM 
Sbjct: 191  FSVQVNGELAGFFQSSRGLRQGCALSPYLFVICMDVLSKLLDKVVGIGRIGYHPHCKRMG 250

Query: 487  LIHLGFVDNLLLFCRGDTSSVQLIFDQF*CFSKASGLTANAAKSSVYFGGMXXXXXXXVL 666
            L HL F D+L++   G   S++ I + F  FSK SGL  +  KS+++  G+       + 
Sbjct: 251  LTHLSFADDLMILTDGQCRSIEGIIEVFDLFSKWSGLKISMEKSTIFSAGLSSTSRAQLH 310

Query: 667  EILEFSKGVQIPGGPFEHIEGILCSIPASTRQAPS*D---*VLDYQVSIICWKS------ 819
                F  G      P  ++      +P  T++  S D    +   +  I  W S      
Sbjct: 311  THFPFEVGEL----PIRYL-----GLPLVTKRLSSVDYAPLIEQIRKRIGSWSSRFLSFA 361

Query: 820  ----LADQICVVHCSSILGSSVCVAKESDQSHRSLL*KFFVDRWSIAVKKALLTWSRVCR 987
                L   I    C+  L S+  + +   Q    L   F     ++  KKA ++W++VC+
Sbjct: 362  GRFNLISSIIWSSCNFWL-SAFQLPRACIQEIEKLCSSFLWSGTNLNSKKAKISWNQVCK 420

Query: 988  SETLGGLNVLDISTWNKVAISQLL*NICETKDKLWIKWL--HCYYGKIRSLLEEIPKQAS 1161
             ++ GGL +  +   N V   +L+  I    D LW+KW+  +    +I  +++E     S
Sbjct: 421  PKSEGGLGLRSLKEANDVCCLKLVWRIISHGDSLWVKWVEHNLLKREIFWIVKENANLGS 480

Query: 1162 WIIQKILRGRPI---FC 1203
            WI +KIL+ R +   FC
Sbjct: 481  WIWKKILKYRGVAKRFC 497


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 1223

 Score =  110 bits (276), Expect = 2e-21
 Identities = 90/319 (28%), Positives = 153/319 (47%), Gaps = 17/319 (5%)
 Frame = +1

Query: 292  IIMSYFSVIINRKPAAFVEARKGLRQGDLVTSFLFVMVMESLSRLFKQLGKNPNFNFHPK 471
            I  + FSV +N + A + ++ +GLRQG  ++ +LFV+ M+ LS++  +     +F +HPK
Sbjct: 633  ITTASFSVQVNGELAGYFQSSRGLRQGCALSPYLFVICMDVLSKMLDKAAAARHFGYHPK 692

Query: 472  CSRMVLIHLGFVDNLLLFCRGDTSSVQLIFDQF*CFSKASGLTANAAKSSVYFGGMXXXX 651
            C  M L HL F D+L++   G   S++ I   F  F+K SGL  +  KS+VY  G+    
Sbjct: 693  CKTMGLTHLSFADDLMVLSDGKIRSIERIIKVFDEFAKWSGLRISLEKSTVYLAGLSATA 752

Query: 652  XXXVLEILEFSKGVQIPGGPFEHIEGILCSIPASTRQAPS*D*V-LDYQV--SIICWK-- 816
               V +   FS G Q+P             +P  T++  + D + L  QV   I  W   
Sbjct: 753  RNEVADRFPFSSG-QLPVR--------YLGLPLITKRLSTTDCLPLLEQVRKRIGSWTSR 803

Query: 817  --SLADQICVVHCSSILGSSVC--------VAKESDQSHRSLL*KFFVDRWSIAVKKALL 966
              S A ++ ++  SS+L  S+C        + ++  +    +   F      +   KA +
Sbjct: 804  FLSYAGRLNLI--SSVLW-SICNFWLAAFRLPRKCIRELEKMCSAFLWSGTEMNSNKAKI 860

Query: 967  TWSRVCRSETLGGLNVLDISTWNKVAISQLL*NICETKDKLWIKWLHCYYGKIRSLLE-- 1140
            +W  VC+ +  GGL +  +   N V   +L+  I    + LW+KW+  +  +  S  E  
Sbjct: 861  SWHMVCKPKDEGGLGLRSLKEANDVCCLKLVWKIVSHSNSLWVKWVDQHLLRNASFWEVK 920

Query: 1141 EIPKQASWIIQKILRGRPI 1197
            +   Q SWI +K+L+ R +
Sbjct: 921  QTVSQGSWIWKKLLKYREV 939



 Score = 62.0 bits (149), Expect = 9e-07
 Identities = 45/156 (28%), Positives = 70/156 (44%), Gaps = 1/156 (0%)
 Frame = +2

Query: 1241 TQFPTKQFYLKLRGDFPKVEWRKLVYNIWALPKWIFILRLAAHGILHTRDRLSKWGVTNA 1420
            T F T+  +   R    +V W K+++   A PK+ F   LAAHG L T DR+  W    A
Sbjct: 1036 TTFSTRDTWHHTRSTSARVPWHKVIWFSHATPKYSFCSWLAAHGRLPTGDRMINWANGIA 1095

Query: 1421 TVCPYVS*LMRLTLISSLYVCS-TSEVWQKLLRRQGVHKNSRQWDAAVE*AVQFAKGKTT 1597
            T C +    +  T     + CS TS +W  L R     + +  W + +E A+  ++    
Sbjct: 1096 TDCIFCQGTLE-TRDHLFFTCSFTSVIWVDLARGIFKTQYTSHWQSIIE-AITNSQHHRV 1153

Query: 1598 RAEVYRMSLAAAVDHIWKERNMRHFQQTEQTIDRLV 1705
               + R    A +  +W+ERN R   +   T  +LV
Sbjct: 1154 EWFLRRYVFQATIYIVWRERNGRRHGEPPNTASQLV 1189


>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1352

 Score =  110 bits (275), Expect = 2e-21
 Identities = 93/362 (25%), Positives = 168/362 (46%), Gaps = 14/362 (3%)
 Frame = +1

Query: 148  KIKILTEFFFVNFALLLGFGGSTYLLDMFIYHGGCPKKIY**RL*FCTIIMSYFSVIINR 327
            KI I   F FV +  L+    + +L +MFI+            +  C I  + FSV +N 
Sbjct: 744  KIDISKAFDFVQWPFLINVLKAIHLPEMFIHW-----------IELC-IGTASFSVQVNG 791

Query: 328  KPAAFVEARKGLRQGDLVTSFLFVMVMESLSRLFKQLGKNPNFNFHPKCSRMVLIHLGFV 507
            + + F  + +GLRQG  ++ +L+V+ M  LS +  +       ++HP+C  M L HL F 
Sbjct: 792  ELSGFFRSERGLRQGCSLSPYLYVICMNVLSCMLDKAAVEKKISYHPRCRNMNLTHLCFA 851

Query: 508  DNLLLFCRGDTSSVQLIFDQF*CFSKASGLTANAAKSSVYFGGMXXXXXXXVLEILEFSK 687
            D++++F  G + S+Q     F  F+  S L  +  KS+++  G+       +L+   F  
Sbjct: 852  DDIMVFSDGTSKSIQGTLAIFEKFAAMSWLKISLEKSTIFMAGISPNAKTSILQQFPFEL 911

Query: 688  GVQIPGGPFEHIEGILCSIPASTRQAPS*D---*VLDYQVSIICWK----SLADQICVVH 846
            G      P +++      +P  T++    D    V   +  I  W     S A ++ ++ 
Sbjct: 912  GTL----PVKYL-----GLPLLTKRMTQSDYLPLVEKIRARITSWTNRFLSFAGRLQLIK 962

Query: 847  --CSSILGSSVCVAKESDQSHRSLL*KFFVDRWS---IAVKKALLTWSRVCRSETLGGLN 1011
               SSI    + V +      + +   F    WS   +  KKA + WS VC+ +  GGL 
Sbjct: 963  SVLSSITNFWLSVFRLPKACLQEIEKMFSAFLWSGPDLNTKKAKIAWSEVCKLKEEGGLG 1022

Query: 1012 VLDISTWNKVAISQLL*NICETKDKLWIKWLHCYYGKIRSL--LEEIPKQASWIIQKILR 1185
            +  +   N+V++ +L+  I   +D LW+KW++ +  +  +   ++E     SW+ +KIL+
Sbjct: 1023 LKPLKEANEVSLLKLIWRILSARDSLWVKWVNKHLIRKETFWSVKENTGLGSWLWRKILK 1082

Query: 1186 GR 1191
             R
Sbjct: 1083 QR 1084


>gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]
          Length = 740

 Score =  109 bits (273), Expect = 4e-21
 Identities = 84/311 (27%), Positives = 147/311 (47%), Gaps = 14/311 (4%)
 Frame = +1

Query: 307  FSVIINRKPAAFVEARKGLRQGDLVTSFLFVMVMESLSRLFKQLGKNPNFNFHPKCSRMV 486
            FSV +N + A F  +++GLRQG  ++ +LFV+ M  LS +      + N  +HPKC ++ 
Sbjct: 211  FSVQVNGELAGFFGSKRGLRQGCALSPYLFVICMNVLSHMIDVAAVHRNIGYHPKCKKLS 270

Query: 487  LIHLGFVDNLLLFCRGDTSSVQLIFDQF*CFSKASGLTANAAKSSVYFGGMXXXXXXXVL 666
            L HL F D+L++F  G   SV+ + + F  F+  SGL  +  KS++Y  G+       +L
Sbjct: 271  LTHLCFADDLMVFIDGQQRSVEGVINIFKEFAGKSGLHISLEKSTLYLAGVSELNRNNIL 330

Query: 667  EILEFSKGVQIPGGPFEHIEGILCSIPASTRQAPS*D--*VLD-YQVSIICWK----SLA 825
                F+ G Q+P             +P  T+Q  + D   +LD  +  I  W     S A
Sbjct: 331  SAFPFASG-QLPVR--------YLGLPLLTKQMTTADYSPLLDKVRSKISSWTARSLSYA 381

Query: 826  DQIC-----VVHCSSILGSSVCVAKESDQSHRSLL*KFFVDRWSIAVKKALLTWSRVCRS 990
             ++      +V  S+   S+  +     +    L   F      +  KKA +TW+ +C+ 
Sbjct: 382  GRLALINSVIVSLSNFWMSAYRLPAGCIKEIEKLCSAFLWSGPELNPKKAKITWTSLCKL 441

Query: 991  ETLGGLNVLDISTWNKVAISQLL*NICETKDKLWIKWLHCYYGKIRSLLEEIPKQA--SW 1164
            +  GGL +  +   NKV+  +L+  +   +  LW+ W+  Y  +  S      + +  SW
Sbjct: 442  KQEGGLGIKSLLEANKVSCLKLIWRLVSRQSSLWVNWVWTYIIRKGSFWSANDRSSLGSW 501

Query: 1165 IIQKILRGRPI 1197
            + +K+L+ R +
Sbjct: 502  MWKKLLKYRDV 512


>gb|AAD15471.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1277

 Score =  106 bits (265), Expect = 3e-20
 Identities = 83/311 (26%), Positives = 144/311 (46%), Gaps = 14/311 (4%)
 Frame = +1

Query: 307  FSVIINRKPAAFVEARKGLRQGDLVTSFLFVMVMESLSRLFKQLGKNPNFNFHPKCSRMV 486
            FSV +N + A F  +++GLRQG  ++ +LFV+ M  LS +      + N  +HPKC ++ 
Sbjct: 780  FSVQVNSEQAGFFGSKRGLRQGCALSPYLFVICMNVLSHMIDVAAVHRNIGYHPKCKKLS 839

Query: 487  LIHLGFVDNLLLFCRGDTSSVQLIFDQF*CFSKASGLTANAAKSSVYFGGMXXXXXXXVL 666
            L HL F D+L++F  G   SV+ + + F  F+  SGL  +  KS++Y   +       +L
Sbjct: 840  LTHLCFADDLMVFIDGQQRSVEGVINIFKDFAGKSGLHISLEKSTLYLAEVSELNRNNIL 899

Query: 667  EILEFSKGVQIPGGPFEHIEGILCSIPASTRQAPS*D--*VLD-YQVSIICWK----SLA 825
                F+ G Q+P              P  T+Q  + D   +LD  +  I  W     S A
Sbjct: 900  SAFPFASG-QLPVR--------YLGFPLLTKQMTTADYSPLLDKVRSKISSWTARSLSYA 950

Query: 826  DQIC-----VVHCSSILGSSVCVAKESDQSHRSLL*KFFVDRWSIAVKKALLTWSRVCRS 990
             ++      +V  S+   S+  +     +    L   F      +  KKA +TW+ +C+ 
Sbjct: 951  GRLALINSVIVSLSNFWMSAYRLPAGCIKEIEKLCSAFLWSGPELNPKKAKITWTSLCKL 1010

Query: 991  ETLGGLNVLDISTWNKVAISQLL*NICETKDKLWIKWLHCYYGKIRSLLEEIPKQA--SW 1164
            +  GGL +  +   NKV+  +L+  +   +  LW+ W+  Y  +  S      + +  SW
Sbjct: 1011 KQEGGLGIKSLLEANKVSCLKLIWRLVSRQSSLWVNWVWTYIIRKGSFWSANDRSSLGSW 1070

Query: 1165 IIQKILRGRPI 1197
            + +K+L  R +
Sbjct: 1071 MWKKLLNYRDV 1081