BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atropa21_contig00034570
         (1706 letters)

Database: nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006349329.1| PREDICTED: tRNA pseudouridine synthase-like ...   689   0.0  
ref|XP_004230453.1| PREDICTED: tRNA pseudouridine synthase A-lik...   680   0.0  
ref|XP_002263416.1| PREDICTED: tRNA pseudouridine synthase A [Vi...   530   e-148
ref|XP_004309887.1| PREDICTED: tRNA pseudouridine synthase A-lik...   514   e-143
gb|EOX97059.1| Pseudouridine synthase family protein isoform 1 [...   510   e-142
gb|EOX97061.1| Pseudouridine synthase family protein isoform 3 [...   504   e-140
ref|XP_004161929.1| PREDICTED: tRNA pseudouridine synthase A-lik...   498   e-138
ref|XP_002526453.1| pseudouridylate synthase, putative [Ricinus ...   492   e-136
ref|XP_003540148.1| PREDICTED: tRNA pseudouridine synthase-like ...   478   e-132
ref|XP_006389535.1| hypothetical protein POPTR_0022s00690g [Popu...   475   e-131
ref|XP_004485453.1| PREDICTED: tRNA pseudouridine synthase A-lik...   473   e-131
gb|ESW20555.1| hypothetical protein PHAVU_006G218900g [Phaseolus...   469   e-129
gb|AAT06466.1| At1g09800 [Arabidopsis thaliana]                       468   e-129
dbj|BAD44444.1| unnamed protein product [Arabidopsis thaliana] g...   466   e-128
ref|XP_006417534.1| hypothetical protein EUTSA_v10007981mg [Eutr...   466   e-128
ref|NP_172451.2| pseudouridine synthase family protein [Arabidop...   465   e-128
gb|ESW20554.1| hypothetical protein PHAVU_006G218900g [Phaseolus...   462   e-127
gb|EOX97060.1| Pseudouridine synthase family protein isoform 2 [...   462   e-127
ref|NP_001242177.1| uncharacterized protein LOC100799818 [Glycin...   462   e-127
ref|XP_002331109.1| predicted protein [Populus trichocarpa]           462   e-127

>ref|XP_006349329.1| PREDICTED: tRNA pseudouridine synthase-like 1-like [Solanum
            tuberosum]
          Length = 389

 Score =  689 bits (1777), Expect = 0.0
 Identities = 351/394 (89%), Positives = 367/394 (93%), Gaps = 5/394 (1%)
 Frame = +3

Query: 72   MTNDQSQPLISETSKHSLDLRPESPLRPSKLAKVIDDNIADDGNDVVQ-----ESVSRTI 236
            M+NDQSQPLISET+KHSLD RPESP RPSK  KV DD     GNDV++     ESV+RT 
Sbjct: 1    MSNDQSQPLISETNKHSLDQRPESPQRPSKFPKVNDDA----GNDVLEGEEQKESVTRT- 55

Query: 237  MNPNPRLQRYLIAIEYIGTRFAGAQQQPNCRTVVGVLEEAFQKFVGQPVSVFCSSRTDAG 416
            MNPNPRLQRYLIAIEYIGTRFAGAQQQPNCRTVVGVL+EAFQKFVGQPVSVFCSSRTDAG
Sbjct: 56   MNPNPRLQRYLIAIEYIGTRFAGAQQQPNCRTVVGVLQEAFQKFVGQPVSVFCSSRTDAG 115

Query: 417  VHSLSNVCHVDVERISKRKPGEVLPPHEPLVVKRAVNHFLQKNEGDIMVIDVRRVPADFH 596
            VH+LSNVCHVDVERISKRKPG+VLPPHEPLVVKRAVNHFLQKNEGDIMVIDVR VPADFH
Sbjct: 116  VHALSNVCHVDVERISKRKPGDVLPPHEPLVVKRAVNHFLQKNEGDIMVIDVRCVPADFH 175

Query: 597  ARYKAQERTYFYRLLSGPEPVSSFERNRAWHVPENLDLLAMQKACKILVGRHDFSSFRAA 776
            ARYKAQERTYFYRLLSGPE VSSFER+RAWHVPENLDLLAMQKAC IL+GRHDFSSFRAA
Sbjct: 176  ARYKAQERTYFYRLLSGPESVSSFERDRAWHVPENLDLLAMQKACNILIGRHDFSSFRAA 235

Query: 777  ACQANSPIRTLEELNVTEVVSTPYFPSISERLKGSCVMEDPSVSLGSDTSHSHISLNTNE 956
            ACQANSPIRTL+ELNV EVVSTP+FPSISERLK S VMEDP+VSLGSDT+HS ISLNTNE
Sbjct: 236  ACQANSPIRTLDELNVIEVVSTPFFPSISERLKSSSVMEDPTVSLGSDTNHSQISLNTNE 295

Query: 957  EKLEGSNGEACQEFGLRKRHRCFVVTARARSFLYHQVRLLVGVLKSVGAGDLTVPDVKRI 1136
            EKLEGSNGEACQEFGLR+RHRCFVVTARARSFLYHQVRLLVGVLKSVGAG LT PDVKRI
Sbjct: 296  EKLEGSNGEACQEFGLRRRHRCFVVTARARSFLYHQVRLLVGVLKSVGAGVLTDPDVKRI 355

Query: 1137 LEAKSITAASPMAPACGLYLGHVKYNLPPETCQS 1238
            LEAKSITAA PMAPACGLYLGHVKY+LPPET QS
Sbjct: 356  LEAKSITAAPPMAPACGLYLGHVKYDLPPETNQS 389


>ref|XP_004230453.1| PREDICTED: tRNA pseudouridine synthase A-like [Solanum lycopersicum]
          Length = 389

 Score =  680 bits (1755), Expect = 0.0
 Identities = 345/394 (87%), Positives = 362/394 (91%), Gaps = 5/394 (1%)
 Frame = +3

Query: 72   MTNDQSQPLISETSKHSLDLRPESPLRPSKLAKVIDDNIADDGNDVVQ-----ESVSRTI 236
            M+NDQ QPLISET+KHSLD RPESP RPSKL KV DD     GNDVV+     ESV+RT 
Sbjct: 1    MSNDQLQPLISETNKHSLDQRPESPQRPSKLPKVNDDG----GNDVVEGEEQKESVTRT- 55

Query: 237  MNPNPRLQRYLIAIEYIGTRFAGAQQQPNCRTVVGVLEEAFQKFVGQPVSVFCSSRTDAG 416
            MNPNPRLQRYL+AIEYIGTRFAGAQQQPNCRTVVGVL+EAFQKF+GQPVSVFCSSRTDAG
Sbjct: 56   MNPNPRLQRYLLAIEYIGTRFAGAQQQPNCRTVVGVLQEAFQKFIGQPVSVFCSSRTDAG 115

Query: 417  VHSLSNVCHVDVERISKRKPGEVLPPHEPLVVKRAVNHFLQKNEGDIMVIDVRRVPADFH 596
            VH+LSNVCHVDVERISKRKPG+VLPPHEPLVVKRAVNHFLQKN GDIMVIDVR VP DFH
Sbjct: 116  VHALSNVCHVDVERISKRKPGDVLPPHEPLVVKRAVNHFLQKNAGDIMVIDVRCVPDDFH 175

Query: 597  ARYKAQERTYFYRLLSGPEPVSSFERNRAWHVPENLDLLAMQKACKILVGRHDFSSFRAA 776
            ARYKAQERTYFYRLLSGPEPVSSFER+RAWHVPENLDLLAMQKAC IL+GRHDFSSFRAA
Sbjct: 176  ARYKAQERTYFYRLLSGPEPVSSFERDRAWHVPENLDLLAMQKACNILIGRHDFSSFRAA 235

Query: 777  ACQANSPIRTLEELNVTEVVSTPYFPSISERLKGSCVMEDPSVSLGSDTSHSHISLNTNE 956
            ACQANSPIRTL+ELNV EVVSTP+FPSISERLK S VMEDP+V LGSDT+HS IS NTNE
Sbjct: 236  ACQANSPIRTLDELNVIEVVSTPFFPSISERLKSSSVMEDPTVYLGSDTNHSQISFNTNE 295

Query: 957  EKLEGSNGEACQEFGLRKRHRCFVVTARARSFLYHQVRLLVGVLKSVGAGDLTVPDVKRI 1136
             KLEGSNGEACQEFGLR+RHRCFVVTARARSFLYHQVRLLVGVLKSVGAGDLT PDVKRI
Sbjct: 296  GKLEGSNGEACQEFGLRRRHRCFVVTARARSFLYHQVRLLVGVLKSVGAGDLTDPDVKRI 355

Query: 1137 LEAKSITAASPMAPACGLYLGHVKYNLPPETCQS 1238
            LEAKSI AA PMAPACGLYLGHVKY+LPPE  QS
Sbjct: 356  LEAKSIAAAPPMAPACGLYLGHVKYDLPPENNQS 389


>ref|XP_002263416.1| PREDICTED: tRNA pseudouridine synthase A [Vitis vinifera]
            gi|297739525|emb|CBI29707.3| unnamed protein product
            [Vitis vinifera]
          Length = 380

 Score =  530 bits (1366), Expect = e-148
 Identities = 265/378 (70%), Positives = 314/378 (83%)
 Frame = +3

Query: 87   SQPLISETSKHSLDLRPESPLRPSKLAKVIDDNIADDGNDVVQESVSRTIMNPNPRLQRY 266
            S+   S++ KH L+ R ESP RPSK+A+  D     DG    Q+SV+   M  NPR+QRY
Sbjct: 10   SESARSDSPKHLLNRRSESPQRPSKIARTDD---LSDGEQ--QDSVASKTMTQNPRVQRY 64

Query: 267  LIAIEYIGTRFAGAQQQPNCRTVVGVLEEAFQKFVGQPVSVFCSSRTDAGVHSLSNVCHV 446
            L+A+EYIGTRF+G+QQQ NCRTV G L+EAF KF+GQPVS+FCSSRTDAGVH+LSNVCHV
Sbjct: 65   LVAVEYIGTRFSGSQQQLNCRTVAGALQEAFHKFIGQPVSIFCSSRTDAGVHALSNVCHV 124

Query: 447  DVERISKRKPGEVLPPHEPLVVKRAVNHFLQKNEGDIMVIDVRRVPADFHARYKAQERTY 626
            DVERISKRKPGEVLPPHEP VV+RAVNHFLQKNEGD+MVIDVR VP DFHARYKA+ERTY
Sbjct: 125  DVERISKRKPGEVLPPHEPAVVRRAVNHFLQKNEGDVMVIDVRCVPPDFHARYKARERTY 184

Query: 627  FYRLLSGPEPVSSFERNRAWHVPENLDLLAMQKACKILVGRHDFSSFRAAACQANSPIRT 806
            FYRLLSGPEP+SSFE++RAWHVPE+LDLLAMQKAC++LVG HDFSSFRAA CQA SPIRT
Sbjct: 185  FYRLLSGPEPLSSFEKDRAWHVPEDLDLLAMQKACRVLVGCHDFSSFRAAGCQAKSPIRT 244

Query: 807  LEELNVTEVVSTPYFPSISERLKGSCVMEDPSVSLGSDTSHSHISLNTNEEKLEGSNGEA 986
            L+EL V+EV+ TPYFPSI+ER + +   E+P ++  ++          N ++L+G NG A
Sbjct: 245  LDELCVSEVLPTPYFPSITERAQNNFTEENP-LACSNNAEVPDSPSTANHDRLDGFNG-A 302

Query: 987  CQEFGLRKRHRCFVVTARARSFLYHQVRLLVGVLKSVGAGDLTVPDVKRILEAKSITAAS 1166
             Q FG+R+RHRCF+VTARARSFLYHQVRLLVGV+K VG GDLTV DV+RIL AK++TAAS
Sbjct: 303  GQGFGVRRRHRCFLVTARARSFLYHQVRLLVGVIKCVGTGDLTVSDVERILNAKTVTAAS 362

Query: 1167 PMAPACGLYLGHVKYNLP 1220
            PMAPACGLYLG+V Y+LP
Sbjct: 363  PMAPACGLYLGNVNYDLP 380


>ref|XP_004309887.1| PREDICTED: tRNA pseudouridine synthase A-like [Fragaria vesca subsp.
            vesca]
          Length = 350

 Score =  514 bits (1323), Expect = e-143
 Identities = 256/374 (68%), Positives = 302/374 (80%)
 Frame = +3

Query: 99   ISETSKHSLDLRPESPLRPSKLAKVIDDNIADDGNDVVQESVSRTIMNPNPRLQRYLIAI 278
            +SE  KHSL+ R +SP RPSK++K   +           E+ + ++  P   +QRYLIAI
Sbjct: 1    MSENLKHSLESRSQSPKRPSKISKTTSE-----------EAEAESMSKPQG-IQRYLIAI 48

Query: 279  EYIGTRFAGAQQQPNCRTVVGVLEEAFQKFVGQPVSVFCSSRTDAGVHSLSNVCHVDVER 458
            EYIGTRF+G+QQQ NCRTVVGVLEEAF+KF+GQPVS+FCSSRTDAGVH+LSNVCHVD+ER
Sbjct: 49   EYIGTRFSGSQQQSNCRTVVGVLEEAFRKFIGQPVSIFCSSRTDAGVHALSNVCHVDIER 108

Query: 459  ISKRKPGEVLPPHEPLVVKRAVNHFLQKNEGDIMVIDVRRVPADFHARYKAQERTYFYRL 638
            ISKRKPGEVLPPHEP+VV+RAVNHFLQKNEGD+MV+DVR VPADFHAR+KAQERTYFYRL
Sbjct: 109  ISKRKPGEVLPPHEPIVVQRAVNHFLQKNEGDVMVVDVRSVPADFHARFKAQERTYFYRL 168

Query: 639  LSGPEPVSSFERNRAWHVPENLDLLAMQKACKILVGRHDFSSFRAAACQANSPIRTLEEL 818
            LSGPEP+S+FE++RAWH+PE LD+LAMQ+ACKILVG HDFSSFRAA CQA SPIRTL+EL
Sbjct: 169  LSGPEPLSTFEKDRAWHIPEELDVLAMQEACKILVGHHDFSSFRAAGCQAKSPIRTLDEL 228

Query: 819  NVTEVVSTPYFPSISERLKGSCVMEDPSVSLGSDTSHSHISLNTNEEKLEGSNGEACQEF 998
            NV+EVVS+P FP+I+ER +     +    +      HS              NG   Q F
Sbjct: 229  NVSEVVSSPNFPTIAERTRNLVQKDIQCTNNPEADCHSSF------------NGGTDQGF 276

Query: 999  GLRKRHRCFVVTARARSFLYHQVRLLVGVLKSVGAGDLTVPDVKRILEAKSITAASPMAP 1178
            GLRK+HRC VVTARAR+FLYHQVRLLVGVLK VG GDL +PDV+RIL AK++TAASPMAP
Sbjct: 277  GLRKKHRCIVVTARARAFLYHQVRLLVGVLKCVGTGDLKIPDVERILNAKTVTAASPMAP 336

Query: 1179 ACGLYLGHVKYNLP 1220
            ACGLYLGHV+Y+LP
Sbjct: 337  ACGLYLGHVRYDLP 350


>gb|EOX97059.1| Pseudouridine synthase family protein isoform 1 [Theobroma cacao]
          Length = 374

 Score =  510 bits (1314), Expect = e-142
 Identities = 260/374 (69%), Positives = 298/374 (79%)
 Frame = +3

Query: 99   ISETSKHSLDLRPESPLRPSKLAKVIDDNIADDGNDVVQESVSRTIMNPNPRLQRYLIAI 278
            +SE  KHSL   PES  RPSK+ K  D +  ++  +  Q+  S   M+ NPR+QRYL+AI
Sbjct: 1    MSENPKHSLSTTPESS-RPSKIPKTQDHSDQEEEEEDKQQQESS--MSKNPRIQRYLVAI 57

Query: 279  EYIGTRFAGAQQQPNCRTVVGVLEEAFQKFVGQPVSVFCSSRTDAGVHSLSNVCHVDVER 458
            EYIGTRF+G+QQQPNCRTVVGVLEEAF KF+GQPVS+FCSSRTDAGVH+LSNVCHVDVER
Sbjct: 58   EYIGTRFSGSQQQPNCRTVVGVLEEAFLKFIGQPVSIFCSSRTDAGVHALSNVCHVDVER 117

Query: 459  ISKRKPGEVLPPHEPLVVKRAVNHFLQKNEGDIMVIDVRRVPADFHARYKAQERTYFYRL 638
            ISKRKPGEVLPPHEP VV+RAVNHFLQK+EGDI VIDVR VP DFHARYKAQERTYFYRL
Sbjct: 118  ISKRKPGEVLPPHEPSVVRRAVNHFLQKSEGDITVIDVRCVPNDFHARYKAQERTYFYRL 177

Query: 639  LSGPEPVSSFERNRAWHVPENLDLLAMQKACKILVGRHDFSSFRAAACQANSPIRTLEEL 818
            LSG EP+S+FE+ RAWHVPE LDL AMQ+ACK+LVG HDFSSFRAA CQA SPIRTL+EL
Sbjct: 178  LSGSEPLSTFEKERAWHVPEKLDLYAMQEACKVLVGHHDFSSFRAAGCQAKSPIRTLDEL 237

Query: 819  NVTEVVSTPYFPSISERLKGSCVMEDPSVSLGSDTSHSHISLNTNEEKLEGSNGEACQEF 998
            +V+E   TPYFPSISE+ + +   ED             I   +N +   GSNG     F
Sbjct: 238  HVSEAPPTPYFPSISEKKQNNSSTEDSHACSREPEIDLPIDSFSNSDDEVGSNGITDLGF 297

Query: 999  GLRKRHRCFVVTARARSFLYHQVRLLVGVLKSVGAGDLTVPDVKRILEAKSITAASPMAP 1178
            G+R+RH C+VVTARARSFLYHQVRLLVGVLK VG G+LT  DV+RIL AK++TAASPMAP
Sbjct: 298  GIRRRHHCYVVTARARSFLYHQVRLLVGVLKCVGTGELTTSDVERILNAKTVTAASPMAP 357

Query: 1179 ACGLYLGHVKYNLP 1220
            A GLYLG VKY+LP
Sbjct: 358  AYGLYLGCVKYDLP 371


>gb|EOX97061.1| Pseudouridine synthase family protein isoform 3 [Theobroma cacao]
          Length = 373

 Score =  504 bits (1297), Expect = e-140
 Identities = 259/374 (69%), Positives = 297/374 (79%)
 Frame = +3

Query: 99   ISETSKHSLDLRPESPLRPSKLAKVIDDNIADDGNDVVQESVSRTIMNPNPRLQRYLIAI 278
            +SE  KHSL   PES  RPSK+ K  D +  ++  +  Q+  S   M+ NPR+QRYL+AI
Sbjct: 1    MSENPKHSLSTTPESS-RPSKIPKTQDHSDQEEEEEDKQQQESS--MSKNPRIQRYLVAI 57

Query: 279  EYIGTRFAGAQQQPNCRTVVGVLEEAFQKFVGQPVSVFCSSRTDAGVHSLSNVCHVDVER 458
            EYIGTRF+G+QQQPNCRTVVGVLEEAF KF+GQPVS+FCSSRTDAGVH+LSNVCHVDVER
Sbjct: 58   EYIGTRFSGSQQQPNCRTVVGVLEEAFLKFIGQPVSIFCSSRTDAGVHALSNVCHVDVER 117

Query: 459  ISKRKPGEVLPPHEPLVVKRAVNHFLQKNEGDIMVIDVRRVPADFHARYKAQERTYFYRL 638
            ISKRKPGEVLPPHEP VV+RAVNHFLQ +EGDI VIDVR VP DFHARYKAQERTYFYRL
Sbjct: 118  ISKRKPGEVLPPHEPSVVRRAVNHFLQ-SEGDITVIDVRCVPNDFHARYKAQERTYFYRL 176

Query: 639  LSGPEPVSSFERNRAWHVPENLDLLAMQKACKILVGRHDFSSFRAAACQANSPIRTLEEL 818
            LSG EP+S+FE+ RAWHVPE LDL AMQ+ACK+LVG HDFSSFRAA CQA SPIRTL+EL
Sbjct: 177  LSGSEPLSTFEKERAWHVPEKLDLYAMQEACKVLVGHHDFSSFRAAGCQAKSPIRTLDEL 236

Query: 819  NVTEVVSTPYFPSISERLKGSCVMEDPSVSLGSDTSHSHISLNTNEEKLEGSNGEACQEF 998
            +V+E   TPYFPSISE+ + +   ED             I   +N +   GSNG     F
Sbjct: 237  HVSEAPPTPYFPSISEKKQNNSSTEDSHACSREPEIDLPIDSFSNSDDEVGSNGITDLGF 296

Query: 999  GLRKRHRCFVVTARARSFLYHQVRLLVGVLKSVGAGDLTVPDVKRILEAKSITAASPMAP 1178
            G+R+RH C+VVTARARSFLYHQVRLLVGVLK VG G+LT  DV+RIL AK++TAASPMAP
Sbjct: 297  GIRRRHHCYVVTARARSFLYHQVRLLVGVLKCVGTGELTTSDVERILNAKTVTAASPMAP 356

Query: 1179 ACGLYLGHVKYNLP 1220
            A GLYLG VKY+LP
Sbjct: 357  AYGLYLGCVKYDLP 370


>ref|XP_004161929.1| PREDICTED: tRNA pseudouridine synthase A-like [Cucumis sativus]
          Length = 352

 Score =  498 bits (1283), Expect = e-138
 Identities = 252/377 (66%), Positives = 293/377 (77%), Gaps = 2/377 (0%)
 Frame = +3

Query: 99   ISETSKHSLDLRPESPL-RPSKLAKVIDDNIADDGNDVVQESVSRTIMNPNPRLQRYLIA 275
            ++E  KH L+L  +S   RP K+ K  D+    D  +          MNP P +QRYL+A
Sbjct: 1    MTENQKHGLELSIDSSSQRPLKIGKTTDELFHGDEEEA-------ETMNPKPGIQRYLVA 53

Query: 276  IEYIGTRFAGAQQQPNCRTVVGVLEEAFQKFVGQPVSVFCSSRTDAGVHSLSNVCHVDVE 455
            +EYIGTRF G+QQQPNCRTVVG LEEAFQKF+GQPVSVFCSSRTDAGVH+LSNVCHVDVE
Sbjct: 54   VEYIGTRFYGSQQQPNCRTVVGALEEAFQKFIGQPVSVFCSSRTDAGVHALSNVCHVDVE 113

Query: 456  RISKRKPGEVLPPHEPLVVKRAVNHFLQKNEGDIMVIDVRRVPADFHARYKAQERTYFYR 635
            RISKRKPGEVLPPHEP VV +AVNHFLQK+EGD+ V+DVR VP DFHARYKAQERTYFYR
Sbjct: 114  RISKRKPGEVLPPHEPGVVHKAVNHFLQKHEGDVTVVDVRSVPNDFHARYKAQERTYFYR 173

Query: 636  LLSGPEPVSSFERNRAWHVPENLDLLAMQKACKILVGRHDFSSFRAAACQANSPIRTLEE 815
            L+SGPE +SSFE++RAWHVPE L++ AMQ+ACK+LVG HDFSSFRAA CQANSPIRTL+E
Sbjct: 174  LVSGPEALSSFEKDRAWHVPETLNIGAMQEACKVLVGHHDFSSFRAAGCQANSPIRTLDE 233

Query: 816  LNVTEVVSTPYFPSISERLKGSCVMEDPSVSLGSDTSHSHISLNTNEEKLEGSNGEACQ- 992
            LNV EV STPYFP+  ER +                          E ++E    E C+ 
Sbjct: 234  LNVCEVASTPYFPTSMERKQRQ---------------------GKEESEIEVPCSETCEV 272

Query: 993  EFGLRKRHRCFVVTARARSFLYHQVRLLVGVLKSVGAGDLTVPDVKRILEAKSITAASPM 1172
             FG+R+RHRCFVVTARARSFLYHQVRL+VGVLK+VG+GDLTV DV RILEAK++++A PM
Sbjct: 273  GFGIRRRHRCFVVTARARSFLYHQVRLMVGVLKAVGSGDLTVGDVGRILEAKNVSSARPM 332

Query: 1173 APACGLYLGHVKYNLPP 1223
            APACGLYLGHVKY+LPP
Sbjct: 333  APACGLYLGHVKYDLPP 349


>ref|XP_002526453.1| pseudouridylate synthase, putative [Ricinus communis]
            gi|223534233|gb|EEF35948.1| pseudouridylate synthase,
            putative [Ricinus communis]
          Length = 372

 Score =  492 bits (1266), Expect = e-136
 Identities = 261/379 (68%), Positives = 308/379 (81%), Gaps = 5/379 (1%)
 Frame = +3

Query: 99   ISETSKHSLDLRPESPLRPSKLAKV---IDDNIADDGNDVVQES--VSRTIMNPNPRLQR 263
            ++E  KHSLD   ES  RPSK+ K    +DDN  ++G + +QES  V+ + M+ NP+LQR
Sbjct: 1    MTENPKHSLDT--ESRNRPSKILKTQDFVDDN--EEGEEELQESSFVAES-MSSNPKLQR 55

Query: 264  YLIAIEYIGTRFAGAQQQPNCRTVVGVLEEAFQKFVGQPVSVFCSSRTDAGVHSLSNVCH 443
            YLIA+EYIGT+FAG+Q+Q N RTVVGVLEEAF KF+GQ VSV  SSRTDAGVH+LSNVCH
Sbjct: 56   YLIAVEYIGTKFAGSQKQLNGRTVVGVLEEAFCKFIGQQVSVSLSSRTDAGVHALSNVCH 115

Query: 444  VDVERISKRKPGEVLPPHEPLVVKRAVNHFLQKNEGDIMVIDVRRVPADFHARYKAQERT 623
            VD+ERISKRKPGEVLPPHEP VV+RAVNHFLQKNEGDIMV DVR VP+DFHAR+KAQERT
Sbjct: 116  VDIERISKRKPGEVLPPHEPAVVRRAVNHFLQKNEGDIMVTDVRCVPSDFHARFKAQERT 175

Query: 624  YFYRLLSGPEPVSSFERNRAWHVPENLDLLAMQKACKILVGRHDFSSFRAAACQANSPIR 803
            YFYR LSGPEP+S+FE++RAWHV E+LD++AMQ+ACK+LVG HDFSSFRA+ CQA SPIR
Sbjct: 176  YFYRFLSGPEPLSTFEKDRAWHVLEDLDIVAMQEACKVLVGHHDFSSFRASGCQAKSPIR 235

Query: 804  TLEELNVTEVVSTPYFPSISERLKGSCVMEDPSVSLGSDTSHSHISLNTNEEKLEGSNGE 983
            TL E++V+EV ST YFPSI+ER + +C   + S      T    +  ++N    E S GE
Sbjct: 236  TLAEISVSEVASTLYFPSITER-EQNCENGENSCCKKFKTD-LPMGSHSNTNVAESSFGE 293

Query: 984  ACQEFGLRKRHRCFVVTARARSFLYHQVRLLVGVLKSVGAGDLTVPDVKRILEAKSITAA 1163
                FG+R+RHRCFVVTARARSFLYHQVRLLVGVLKSVG GDLT  DV+RIL AKS+TAA
Sbjct: 294  TDLGFGIRRRHRCFVVTARARSFLYHQVRLLVGVLKSVGIGDLTTSDVERILSAKSVTAA 353

Query: 1164 SPMAPACGLYLGHVKYNLP 1220
            SPMAPA GLYLGHVKY+LP
Sbjct: 354  SPMAPARGLYLGHVKYDLP 372


>ref|XP_003540148.1| PREDICTED: tRNA pseudouridine synthase-like 1-like [Glycine max]
          Length = 369

 Score =  478 bits (1231), Expect = e-132
 Identities = 246/375 (65%), Positives = 303/375 (80%), Gaps = 1/375 (0%)
 Frame = +3

Query: 99   ISETSKHSLDLRPESPLRPSKLAKVIDDNIADDGNDVVQESVSRTIMNPNPRLQRYLIAI 278
            +++  KH++DL      RPSK++K+  +  +D   D  +E +S+   NP   +QRYL+AI
Sbjct: 1    MTQNLKHTVDLECSDNSRPSKISKI--EYPSDSDIDEEEEGMSQ---NPRNGIQRYLVAI 55

Query: 279  EYIGTRFAGAQQQPNCRTVVGVLEEAFQKFVGQPVSVFCSSRTDAGVHSLSNVCHVDVER 458
            EYIGT F+G+Q+Q N RTVVG LEEAF KFVGQPVSV CSSRTDAGVH+LSNVCHVD++R
Sbjct: 56   EYIGTLFSGSQKQLNVRTVVGALEEAFSKFVGQPVSVSCSSRTDAGVHALSNVCHVDIQR 115

Query: 459  ISKRKPGEVLPPHEPLVVKRAVNHFLQKNEGDIMVIDVRRVPADFHARYKAQERTYFYRL 638
            ISKR+PGEVLPPHEP VV RAVNHFLQK++ D+MVIDVR VP+DFHAR+KAQERTYFYRL
Sbjct: 116  ISKRRPGEVLPPHEPAVVGRAVNHFLQKHDSDLMVIDVRCVPSDFHARFKAQERTYFYRL 175

Query: 639  LSGPEPVSSFERNRAWHVPENLDLLAMQKACKILVGRHDFSSFRAAACQANSPIRTLEEL 818
            LSGPEP+S+FE++RAWHVPE L L AMQ+AC++LVG HDFSSFRAA CQA SPIRTL+EL
Sbjct: 176  LSGPEPLSTFEKDRAWHVPEELSLPAMQEACRVLVGCHDFSSFRAAGCQAKSPIRTLDEL 235

Query: 819  NVTEVVSTPYFPSISERLKGSCVMED-PSVSLGSDTSHSHISLNTNEEKLEGSNGEACQE 995
            +V EV+ +PYFPS+ +R + + V  D  S S  ++T    IS N + +K+  S+ +A   
Sbjct: 236  SVNEVIESPYFPSLMDREQHNKVSGDLRSCSNNTETDIPPIS-NPSIDKVITSSQDA--G 292

Query: 996  FGLRKRHRCFVVTARARSFLYHQVRLLVGVLKSVGAGDLTVPDVKRILEAKSITAASPMA 1175
            FG R+RHRC VVTARARSFLYHQVRLLVGVLK+ G G+LT+PDV+RIL AK++TAASPMA
Sbjct: 293  FGKRRRHRCLVVTARARSFLYHQVRLLVGVLKAAGTGNLTIPDVERILNAKTVTAASPMA 352

Query: 1176 PACGLYLGHVKYNLP 1220
            PACGLYLG VKY+LP
Sbjct: 353  PACGLYLGEVKYDLP 367


>ref|XP_006389535.1| hypothetical protein POPTR_0022s00690g [Populus trichocarpa]
            gi|550312358|gb|ERP48449.1| hypothetical protein
            POPTR_0022s00690g [Populus trichocarpa]
          Length = 370

 Score =  475 bits (1222), Expect = e-131
 Identities = 243/359 (67%), Positives = 285/359 (79%), Gaps = 1/359 (0%)
 Frame = +3

Query: 138  ESPL-RPSKLAKVIDDNIADDGNDVVQESVSRTIMNPNPRLQRYLIAIEYIGTRFAGAQQ 314
            ESP  RPSK++K + +       +  +E+V +++    P LQRYL+A+EYIGTRF G+QQ
Sbjct: 12   ESPNERPSKISKTLQEEGDSSEEEEEKEAVDKSM---KPGLQRYLVAVEYIGTRFCGSQQ 68

Query: 315  QPNCRTVVGVLEEAFQKFVGQPVSVFCSSRTDAGVHSLSNVCHVDVERISKRKPGEVLPP 494
            Q N RTVVGVL+EAF KF+GQPV++  SSRTDAGVH+LSNVCHVDVERISKRKPGEVLPP
Sbjct: 69   QLNHRTVVGVLQEAFHKFIGQPVTICLSSRTDAGVHALSNVCHVDVERISKRKPGEVLPP 128

Query: 495  HEPLVVKRAVNHFLQKNEGDIMVIDVRRVPADFHARYKAQERTYFYRLLSGPEPVSSFER 674
            HEP VV++AVNHFLQK EGDIMV DVR VPA FHAR+KAQERTYFYRLL GPE +S+FE+
Sbjct: 129  HEPAVVRKAVNHFLQKKEGDIMVTDVRSVPAHFHARFKAQERTYFYRLLIGPELLSTFEK 188

Query: 675  NRAWHVPENLDLLAMQKACKILVGRHDFSSFRAAACQANSPIRTLEELNVTEVVSTPYFP 854
            +RAWHV E LDL++MQ+ACK+LVG HDFSSFRA+ CQA SP RTLEEL+V EVVSTPYFP
Sbjct: 189  DRAWHVSEELDLVSMQEACKVLVGHHDFSSFRASGCQAKSPFRTLEELSVLEVVSTPYFP 248

Query: 855  SISERLKGSCVMEDPSVSLGSDTSHSHISLNTNEEKLEGSNGEACQEFGLRKRHRCFVVT 1034
            SI+ER + S   E P        +       +N     GSN      FG+R+RHRC+V+T
Sbjct: 249  SITEREQNSSNGEGPHSFHNKCKTGLPTGSISNGFMAGGSNSGTDLGFGIRRRHRCYVIT 308

Query: 1035 ARARSFLYHQVRLLVGVLKSVGAGDLTVPDVKRILEAKSITAASPMAPACGLYLGHVKY 1211
            AR+RSFLYHQVRLLVGVLKSVG GDLTV DV+RIL A+SITAASPMAPACGLYLGHVKY
Sbjct: 309  ARSRSFLYHQVRLLVGVLKSVGTGDLTVSDVERILNARSITAASPMAPACGLYLGHVKY 367


>ref|XP_004485453.1| PREDICTED: tRNA pseudouridine synthase A-like isoform X1 [Cicer
            arietinum]
          Length = 374

 Score =  473 bits (1218), Expect = e-131
 Identities = 240/375 (64%), Positives = 296/375 (78%), Gaps = 1/375 (0%)
 Frame = +3

Query: 99   ISETSKHSLDLRPESPL-RPSKLAKVIDDNIADDGNDVVQESVSRTIMNPNPRLQRYLIA 275
            ++   KH++++   S   RPSK++K+   N +    +  +E   +  MN + R+QRYL+A
Sbjct: 1    MTHNPKHTVEIDECSDNNRPSKISKIEYPNPSYHDGEQEEEEEQKEGMNQHRRIQRYLVA 60

Query: 276  IEYIGTRFAGAQQQPNCRTVVGVLEEAFQKFVGQPVSVFCSSRTDAGVHSLSNVCHVDVE 455
            IEYIGT F+G+Q+Q   RTVVGVLEEAF KFVGQPVSV CSSRTDAGVH+LSNVCHVD+E
Sbjct: 61   IEYIGTHFSGSQKQLTDRTVVGVLEEAFCKFVGQPVSVICSSRTDAGVHALSNVCHVDIE 120

Query: 456  RISKRKPGEVLPPHEPLVVKRAVNHFLQKNEGDIMVIDVRRVPADFHARYKAQERTYFYR 635
            RISKRKPGEVLPPHEP+VV+RAVNHFLQK  GD+MVIDVR VP+DFHARYKAQERTYFYR
Sbjct: 121  RISKRKPGEVLPPHEPVVVRRAVNHFLQKQNGDLMVIDVRCVPSDFHARYKAQERTYFYR 180

Query: 636  LLSGPEPVSSFERNRAWHVPENLDLLAMQKACKILVGRHDFSSFRAAACQANSPIRTLEE 815
            LLSG EP+S+ E++RAWHVPE L+L AMQ+AC++LVG HDFSSFRAA CQA SPIRTL+E
Sbjct: 181  LLSGSEPLSTLEKDRAWHVPEELNLPAMQEACRVLVGHHDFSSFRAAGCQAKSPIRTLDE 240

Query: 816  LNVTEVVSTPYFPSISERLKGSCVMEDPSVSLGSDTSHSHISLNTNEEKLEGSNGEACQE 995
            L+V EV+ +PYFPS+ +R +   V +D      +  +   +S +   +K+  SN      
Sbjct: 241  LSVVEVIQSPYFPSVMDRERQIKVADDLHGCGSNAEAVIPVSSSARIDKVRASNEGV--G 298

Query: 996  FGLRKRHRCFVVTARARSFLYHQVRLLVGVLKSVGAGDLTVPDVKRILEAKSITAASPMA 1175
            FG R+ HRC VVTARAR+FLYHQVRLLVGVLK+VG G+LT+PDV+RIL AK++TAASPMA
Sbjct: 299  FGKRRYHRCLVVTARARAFLYHQVRLLVGVLKAVGTGNLTIPDVERILNAKTVTAASPMA 358

Query: 1176 PACGLYLGHVKYNLP 1220
            PACGLYLG VKY+LP
Sbjct: 359  PACGLYLGEVKYDLP 373


>gb|ESW20555.1| hypothetical protein PHAVU_006G218900g [Phaseolus vulgaris]
          Length = 373

 Score =  469 bits (1206), Expect = e-129
 Identities = 239/374 (63%), Positives = 289/374 (77%)
 Frame = +3

Query: 99   ISETSKHSLDLRPESPLRPSKLAKVIDDNIADDGNDVVQESVSRTIMNPNPRLQRYLIAI 278
            ++ + KHS+DL      RPSKL+K+         +D  +E    T  NP   +QRY +AI
Sbjct: 1    MTHSLKHSVDLECSDNNRPSKLSKIEHSTHIAHEDDEEEEEKEMT-QNPRNGIQRYFLAI 59

Query: 279  EYIGTRFAGAQQQPNCRTVVGVLEEAFQKFVGQPVSVFCSSRTDAGVHSLSNVCHVDVER 458
            EYIGTRF+G+Q+Q  CRTVVG LEEAF KFVG PVSV CSSRTDAGVH+LSNVCHVD++R
Sbjct: 60   EYIGTRFSGSQKQLTCRTVVGALEEAFAKFVGHPVSVSCSSRTDAGVHALSNVCHVDIQR 119

Query: 459  ISKRKPGEVLPPHEPLVVKRAVNHFLQKNEGDIMVIDVRRVPADFHARYKAQERTYFYRL 638
             SKRKPGEVLPPHEP VV RAVNHFLQK++ D+ VIDVR VP+DFHARYKA ERTYFYRL
Sbjct: 120  TSKRKPGEVLPPHEPAVVGRAVNHFLQKHDSDLTVIDVRCVPSDFHARYKALERTYFYRL 179

Query: 639  LSGPEPVSSFERNRAWHVPENLDLLAMQKACKILVGRHDFSSFRAAACQANSPIRTLEEL 818
            LSGPEP+S+FE++RAWHV E L+L AMQ+AC++LVG HDFSSFRAA CQA SPIRTL+EL
Sbjct: 180  LSGPEPLSTFEKDRAWHVSEELNLPAMQEACRVLVGSHDFSSFRAAGCQAKSPIRTLDEL 239

Query: 819  NVTEVVSTPYFPSISERLKGSCVMEDPSVSLGSDTSHSHISLNTNEEKLEGSNGEACQEF 998
            NV+EV+ + +FPS+ +R     V  DP     +  +    S +   +K+  S+ +    F
Sbjct: 240  NVSEVIESLHFPSVMDREGHDKVSSDPRSYPSNSETDIPPSSSPCIDKVTTSSEDV--GF 297

Query: 999  GLRKRHRCFVVTARARSFLYHQVRLLVGVLKSVGAGDLTVPDVKRILEAKSITAASPMAP 1178
            G R+RHRC VVTARARSFLYHQVRLLVGVLK+VG G+LT+PDV+RIL AKS+T+ASPMAP
Sbjct: 298  GKRRRHRCLVVTARARSFLYHQVRLLVGVLKAVGTGNLTIPDVERILNAKSVTSASPMAP 357

Query: 1179 ACGLYLGHVKYNLP 1220
            ACGLYLG VKY+LP
Sbjct: 358  ACGLYLGEVKYDLP 371


>gb|AAT06466.1| At1g09800 [Arabidopsis thaliana]
          Length = 372

 Score =  468 bits (1205), Expect = e-129
 Identities = 238/377 (63%), Positives = 293/377 (77%), Gaps = 3/377 (0%)
 Frame = +3

Query: 99   ISETSKHSLDLRP--ESPLRPSKLAKVIDDNIADDGNDVVQESVSRTIMNP-NPRLQRYL 269
            +S+  KH LD     ES  R SK+A++  +  +D+ ++  Q       MNP NPR+QRYL
Sbjct: 1    MSDNLKHPLDCTASEESLERLSKVARI--EGFSDEESEEQQGLADLESMNPVNPRVQRYL 58

Query: 270  IAIEYIGTRFAGAQQQPNCRTVVGVLEEAFQKFVGQPVSVFCSSRTDAGVHSLSNVCHVD 449
            +AIEYIGTRF+G+QQQ   RTVVGVL+EAF KF+GQPV +FCSSRTDAGVH+LSNVCHVD
Sbjct: 59   VAIEYIGTRFSGSQQQAKDRTVVGVLQEAFHKFIGQPVKIFCSSRTDAGVHALSNVCHVD 118

Query: 450  VERISKRKPGEVLPPHEPLVVKRAVNHFLQKNEGDIMVIDVRRVPADFHARYKAQERTYF 629
            VERISKRKPGEVLPPHEP VV+RAVNHFLQ+ +GD+MVIDVR VP+++HARYKAQERTYF
Sbjct: 119  VERISKRKPGEVLPPHEPGVVQRAVNHFLQRKDGDVMVIDVRCVPSNYHARYKAQERTYF 178

Query: 630  YRLLSGPEPVSSFERNRAWHVPENLDLLAMQKACKILVGRHDFSSFRAAACQANSPIRTL 809
            YRLLSG +P+S  E++R WHVPE L+L  MQ+AC++LVG HDFSSFRAA CQA SP+R+L
Sbjct: 179  YRLLSGSDPLSILEKDRCWHVPEELNLRFMQEACRVLVGSHDFSSFRAAGCQAKSPMRSL 238

Query: 810  EELNVTEVVSTPYFPSISERLKGSCVMEDPSVSLGSDTSHSHISLNTNEEKLEGSNGEAC 989
            +ELN+TEV STPYFPSI+ER   +    DP ++  +        + TN  ++EGS G   
Sbjct: 239  DELNITEVPSTPYFPSITERTLSNLNNGDP-LACSNQPKSETAGVTTNVGEVEGSTGG-- 295

Query: 990  QEFGLRKRHRCFVVTARARSFLYHQVRLLVGVLKSVGAGDLTVPDVKRILEAKSITAASP 1169
              FG R+RHRC+VVTAR+R FLYHQVRL+VG LK VG G+LTV DV+RILEAK+++AA P
Sbjct: 296  DSFGRRRRHRCYVVTARSRGFLYHQVRLIVGALKCVGTGELTVSDVERILEAKTVSAAKP 355

Query: 1170 MAPACGLYLGHVKYNLP 1220
            MAPA GLYL  V+Y  P
Sbjct: 356  MAPASGLYLARVRYEFP 372


>dbj|BAD44444.1| unnamed protein product [Arabidopsis thaliana]
            gi|51971573|dbj|BAD44451.1| unnamed protein product
            [Arabidopsis thaliana]
          Length = 368

 Score =  466 bits (1200), Expect = e-128
 Identities = 237/372 (63%), Positives = 290/372 (77%), Gaps = 3/372 (0%)
 Frame = +3

Query: 114  KHSLDLRP--ESPLRPSKLAKVIDDNIADDGNDVVQESVSRTIMNP-NPRLQRYLIAIEY 284
            KH LD     ES  R SK+A++  +  +D+ ++  Q       MNP NPR+QRYL+AIEY
Sbjct: 2    KHPLDCTASEESLERLSKVARI--EGFSDEESEEQQGLADLESMNPVNPRVQRYLVAIEY 59

Query: 285  IGTRFAGAQQQPNCRTVVGVLEEAFQKFVGQPVSVFCSSRTDAGVHSLSNVCHVDVERIS 464
            IGTRF+G+QQQ   RTVVGVL+EAF KF+GQPV +FCSSRTDAGVH+LSNVCHVDVERIS
Sbjct: 60   IGTRFSGSQQQAKDRTVVGVLQEAFHKFIGQPVKIFCSSRTDAGVHALSNVCHVDVERIS 119

Query: 465  KRKPGEVLPPHEPLVVKRAVNHFLQKNEGDIMVIDVRRVPADFHARYKAQERTYFYRLLS 644
            KRKPGEVLPPHEP VV+RAVNHFLQ+ +GD+MVIDVR VP+++HARYKAQERTYFYRLLS
Sbjct: 120  KRKPGEVLPPHEPGVVQRAVNHFLQRKDGDVMVIDVRCVPSNYHARYKAQERTYFYRLLS 179

Query: 645  GPEPVSSFERNRAWHVPENLDLLAMQKACKILVGRHDFSSFRAAACQANSPIRTLEELNV 824
            G +P+S  E++R WHVPE L+L  MQ+AC++LVG HDFSSFRAA CQA SP+R+L+ELN+
Sbjct: 180  GSDPLSILEKDRCWHVPEELNLRFMQEACRVLVGSHDFSSFRAAGCQAKSPMRSLDELNI 239

Query: 825  TEVVSTPYFPSISERLKGSCVMEDPSVSLGSDTSHSHISLNTNEEKLEGSNGEACQEFGL 1004
            TEV STPYFPSI+ER   +    DP ++  +        + TN  ++EGS G     FG 
Sbjct: 240  TEVPSTPYFPSITERTLSNLNNGDP-LACSNQPKSETAGVTTNVGEVEGSTGG--DSFGR 296

Query: 1005 RKRHRCFVVTARARSFLYHQVRLLVGVLKSVGAGDLTVPDVKRILEAKSITAASPMAPAC 1184
            R+RHRC+VVTAR+R FLYHQVRL+VG LK VG G+LTV DV+RILEAK+++AA PMAPA 
Sbjct: 297  RRRHRCYVVTARSRGFLYHQVRLIVGALKCVGTGELTVSDVERILEAKTVSAAKPMAPAS 356

Query: 1185 GLYLGHVKYNLP 1220
            GLYL  V+Y  P
Sbjct: 357  GLYLARVRYEFP 368


>ref|XP_006417534.1| hypothetical protein EUTSA_v10007981mg [Eutrema salsugineum]
            gi|557095305|gb|ESQ35887.1| hypothetical protein
            EUTSA_v10007981mg [Eutrema salsugineum]
          Length = 368

 Score =  466 bits (1198), Expect = e-128
 Identities = 239/386 (61%), Positives = 290/386 (75%), Gaps = 3/386 (0%)
 Frame = +3

Query: 72   MTNDQSQPLISETSKHSLDLRPESPLRPSKLAKVIDDNIADDGNDVVQES---VSRTIMN 242
            M+ +   PL S  S+ SL+       R SK+A+    +  ++G +  +     VS   ++
Sbjct: 1    MSGNLKHPLDSSASQESLE-------RLSKVARFDGFSDEEEGEEAEERQGLVVSEPELS 53

Query: 243  PNPRLQRYLIAIEYIGTRFAGAQQQPNCRTVVGVLEEAFQKFVGQPVSVFCSSRTDAGVH 422
             NPR+QRYL+AIEYIGTRF+G+QQQ   RTVVGVL+EAF KF+GQPV +FCSSRTDAGVH
Sbjct: 54   MNPRVQRYLVAIEYIGTRFSGSQQQATDRTVVGVLQEAFHKFIGQPVKIFCSSRTDAGVH 113

Query: 423  SLSNVCHVDVERISKRKPGEVLPPHEPLVVKRAVNHFLQKNEGDIMVIDVRRVPADFHAR 602
            +LSNVCHVDVERISKRKPGEVLPPHEP VV+RAVNHFLQ+N+GD+MVIDVR VP+++HAR
Sbjct: 114  ALSNVCHVDVERISKRKPGEVLPPHEPGVVQRAVNHFLQRNDGDVMVIDVRCVPSNYHAR 173

Query: 603  YKAQERTYFYRLLSGPEPVSSFERNRAWHVPENLDLLAMQKACKILVGRHDFSSFRAAAC 782
            YKA+ERTYFYRLLSG +P+S  E++RAWHVPE LDL +MQ+AC++LVG HDFSSFRAA C
Sbjct: 174  YKARERTYFYRLLSGSDPLSILEKDRAWHVPEELDLRSMQEACRVLVGTHDFSSFRAAGC 233

Query: 783  QANSPIRTLEELNVTEVVSTPYFPSISERLKGSCVMEDPSVSLGSDTSHSHISLNTNEEK 962
            QA SPIR+L+ELNVTEV STPYFPSI+ER         PS     D         T    
Sbjct: 234  QAKSPIRSLDELNVTEVPSTPYFPSITER--------TPSYLNNGDPLACSSQAKTETAG 285

Query: 963  LEGSNGEACQEFGLRKRHRCFVVTARARSFLYHQVRLLVGVLKSVGAGDLTVPDVKRILE 1142
            +    G+    FG+R+RHRC+VVTAR R+FLYHQVRLLV  LK VG G+LTV DV+RIL+
Sbjct: 286  VSTDGGDT---FGVRRRHRCYVVTARGRAFLYHQVRLLVAALKCVGTGELTVSDVERILK 342

Query: 1143 AKSITAASPMAPACGLYLGHVKYNLP 1220
            AK++TAA PMAPACGLYL  VKY  P
Sbjct: 343  AKTVTAAKPMAPACGLYLARVKYEFP 368


>ref|NP_172451.2| pseudouridine synthase family protein [Arabidopsis thaliana]
            gi|332190374|gb|AEE28495.1| pseudouridine synthase family
            protein [Arabidopsis thaliana]
          Length = 372

 Score =  465 bits (1197), Expect = e-128
 Identities = 237/377 (62%), Positives = 292/377 (77%), Gaps = 3/377 (0%)
 Frame = +3

Query: 99   ISETSKHSLDLRP--ESPLRPSKLAKVIDDNIADDGNDVVQESVSRTIMNP-NPRLQRYL 269
            +S+  KH LD     ES  R SK+A++  +  +D+ ++  Q       MNP NPR+QRYL
Sbjct: 1    MSDNLKHPLDCTASEESLERLSKVARI--EGFSDEESEEQQGLADLESMNPVNPRVQRYL 58

Query: 270  IAIEYIGTRFAGAQQQPNCRTVVGVLEEAFQKFVGQPVSVFCSSRTDAGVHSLSNVCHVD 449
            +AIEYIGTRF+G+QQQ   RTVVGVL+EAF KF+GQPV +FCSSRTDAGVH+LSNVCHVD
Sbjct: 59   VAIEYIGTRFSGSQQQAKDRTVVGVLQEAFHKFIGQPVKIFCSSRTDAGVHALSNVCHVD 118

Query: 450  VERISKRKPGEVLPPHEPLVVKRAVNHFLQKNEGDIMVIDVRRVPADFHARYKAQERTYF 629
            VERISKRKPGEVLPPHEP VV+RAVNHFLQ+ +GD+MVIDVR VP+++HARYKAQERTYF
Sbjct: 119  VERISKRKPGEVLPPHEPGVVQRAVNHFLQRKDGDVMVIDVRCVPSNYHARYKAQERTYF 178

Query: 630  YRLLSGPEPVSSFERNRAWHVPENLDLLAMQKACKILVGRHDFSSFRAAACQANSPIRTL 809
            YRLLSG +P+S  E++R WHVPE L+L  MQ+AC++LVG HDFSSFRAA CQA SP+R+L
Sbjct: 179  YRLLSGSDPLSILEKDRCWHVPEELNLRFMQEACRVLVGSHDFSSFRAAGCQAKSPMRSL 238

Query: 810  EELNVTEVVSTPYFPSISERLKGSCVMEDPSVSLGSDTSHSHISLNTNEEKLEGSNGEAC 989
            +ELN+TEV STPYFPSI+ER   +    DP ++  +        + TN  ++EGS     
Sbjct: 239  DELNITEVPSTPYFPSITERTLSNLNNGDP-LACSNQPKSETAGVTTNVGEVEGST--EG 295

Query: 990  QEFGLRKRHRCFVVTARARSFLYHQVRLLVGVLKSVGAGDLTVPDVKRILEAKSITAASP 1169
              FG R+RHRC+VVTAR+R FLYHQVRL+VG LK VG G+LTV DV+RILEAK+++AA P
Sbjct: 296  DSFGRRRRHRCYVVTARSRGFLYHQVRLIVGALKCVGTGELTVSDVERILEAKTVSAAKP 355

Query: 1170 MAPACGLYLGHVKYNLP 1220
            MAPA GLYL  V+Y  P
Sbjct: 356  MAPASGLYLARVRYEFP 372


>gb|ESW20554.1| hypothetical protein PHAVU_006G218900g [Phaseolus vulgaris]
          Length = 372

 Score =  462 bits (1189), Expect = e-127
 Identities = 238/374 (63%), Positives = 288/374 (77%)
 Frame = +3

Query: 99   ISETSKHSLDLRPESPLRPSKLAKVIDDNIADDGNDVVQESVSRTIMNPNPRLQRYLIAI 278
            ++ + KHS+DL      RPSKL+K+         +D  +E    T  NP   +QRY +AI
Sbjct: 1    MTHSLKHSVDLECSDNNRPSKLSKIEHSTHIAHEDDEEEEEKEMT-QNPRNGIQRYFLAI 59

Query: 279  EYIGTRFAGAQQQPNCRTVVGVLEEAFQKFVGQPVSVFCSSRTDAGVHSLSNVCHVDVER 458
            EYIGTRF+G+Q+Q  CRTVVG LEEAF KFVG PVSV CSSRTDAGVH+LSNVCHVD++R
Sbjct: 60   EYIGTRFSGSQKQLTCRTVVGALEEAFAKFVGHPVSVSCSSRTDAGVHALSNVCHVDIQR 119

Query: 459  ISKRKPGEVLPPHEPLVVKRAVNHFLQKNEGDIMVIDVRRVPADFHARYKAQERTYFYRL 638
             SKRKPGEVLPPHEP VV RAVNHFLQ ++ D+ VIDVR VP+DFHARYKA ERTYFYRL
Sbjct: 120  TSKRKPGEVLPPHEPAVVGRAVNHFLQ-HDSDLTVIDVRCVPSDFHARYKALERTYFYRL 178

Query: 639  LSGPEPVSSFERNRAWHVPENLDLLAMQKACKILVGRHDFSSFRAAACQANSPIRTLEEL 818
            LSGPEP+S+FE++RAWHV E L+L AMQ+AC++LVG HDFSSFRAA CQA SPIRTL+EL
Sbjct: 179  LSGPEPLSTFEKDRAWHVSEELNLPAMQEACRVLVGSHDFSSFRAAGCQAKSPIRTLDEL 238

Query: 819  NVTEVVSTPYFPSISERLKGSCVMEDPSVSLGSDTSHSHISLNTNEEKLEGSNGEACQEF 998
            NV+EV+ + +FPS+ +R     V  DP     +  +    S +   +K+  S+ +    F
Sbjct: 239  NVSEVIESLHFPSVMDREGHDKVSSDPRSYPSNSETDIPPSSSPCIDKVTTSSEDV--GF 296

Query: 999  GLRKRHRCFVVTARARSFLYHQVRLLVGVLKSVGAGDLTVPDVKRILEAKSITAASPMAP 1178
            G R+RHRC VVTARARSFLYHQVRLLVGVLK+VG G+LT+PDV+RIL AKS+T+ASPMAP
Sbjct: 297  GKRRRHRCLVVTARARSFLYHQVRLLVGVLKAVGTGNLTIPDVERILNAKSVTSASPMAP 356

Query: 1179 ACGLYLGHVKYNLP 1220
            ACGLYLG VKY+LP
Sbjct: 357  ACGLYLGEVKYDLP 370


>gb|EOX97060.1| Pseudouridine synthase family protein isoform 2 [Theobroma cacao]
          Length = 345

 Score =  462 bits (1189), Expect = e-127
 Identities = 235/342 (68%), Positives = 269/342 (78%)
 Frame = +3

Query: 99   ISETSKHSLDLRPESPLRPSKLAKVIDDNIADDGNDVVQESVSRTIMNPNPRLQRYLIAI 278
            +SE  KHSL   PES  RPSK+ K  D +  ++  +  Q+  S   M+ NPR+QRYL+AI
Sbjct: 1    MSENPKHSLSTTPESS-RPSKIPKTQDHSDQEEEEEDKQQQESS--MSKNPRIQRYLVAI 57

Query: 279  EYIGTRFAGAQQQPNCRTVVGVLEEAFQKFVGQPVSVFCSSRTDAGVHSLSNVCHVDVER 458
            EYIGTRF+G+QQQPNCRTVVGVLEEAF KF+GQPVS+FCSSRTDAGVH+LSNVCHVDVER
Sbjct: 58   EYIGTRFSGSQQQPNCRTVVGVLEEAFLKFIGQPVSIFCSSRTDAGVHALSNVCHVDVER 117

Query: 459  ISKRKPGEVLPPHEPLVVKRAVNHFLQKNEGDIMVIDVRRVPADFHARYKAQERTYFYRL 638
            ISKRKPGEVLPPHEP VV+RAVNHFLQK+EGDI VIDVR VP DFHARYKAQERTYFYRL
Sbjct: 118  ISKRKPGEVLPPHEPSVVRRAVNHFLQKSEGDITVIDVRCVPNDFHARYKAQERTYFYRL 177

Query: 639  LSGPEPVSSFERNRAWHVPENLDLLAMQKACKILVGRHDFSSFRAAACQANSPIRTLEEL 818
            LSG EP+S+FE+ RAWHVPE LDL AMQ+ACK+LVG HDFSSFRAA CQA SPIRTL+EL
Sbjct: 178  LSGSEPLSTFEKERAWHVPEKLDLYAMQEACKVLVGHHDFSSFRAAGCQAKSPIRTLDEL 237

Query: 819  NVTEVVSTPYFPSISERLKGSCVMEDPSVSLGSDTSHSHISLNTNEEKLEGSNGEACQEF 998
            +V+E   TPYFPSISE+ + +   ED             I   +N +   GSNG     F
Sbjct: 238  HVSEAPPTPYFPSISEKKQNNSSTEDSHACSREPEIDLPIDSFSNSDDEVGSNGITDLGF 297

Query: 999  GLRKRHRCFVVTARARSFLYHQVRLLVGVLKSVGAGDLTVPD 1124
            G+R+RH C+VVTARARSFLYHQVRLLVGVLK VG G+LT  D
Sbjct: 298  GIRRRHHCYVVTARARSFLYHQVRLLVGVLKCVGTGELTTSD 339


>ref|NP_001242177.1| uncharacterized protein LOC100799818 [Glycine max]
            gi|255637177|gb|ACU18919.1| unknown [Glycine max]
          Length = 370

 Score =  462 bits (1189), Expect = e-127
 Identities = 238/379 (62%), Positives = 295/379 (77%), Gaps = 5/379 (1%)
 Frame = +3

Query: 99   ISETSKHSLDLR--PESPLRPSKLAKV---IDDNIADDGNDVVQESVSRTIMNPNPRLQR 263
            ++E  KH++DL     +  RPSK++ +   ID +I ++            I NP   +QR
Sbjct: 1    MTENLKHTVDLECSDNNINRPSKISIIEYPIDSDIDEE---------EEMIKNPRNGIQR 51

Query: 264  YLIAIEYIGTRFAGAQQQPNCRTVVGVLEEAFQKFVGQPVSVFCSSRTDAGVHSLSNVCH 443
            YL+AIEYIGTRF+G+Q+Q N RTVVGVLEEAF KFVGQPVSV CSSRT AGVH+LSNVCH
Sbjct: 52   YLVAIEYIGTRFSGSQKQLNVRTVVGVLEEAFSKFVGQPVSVSCSSRTVAGVHALSNVCH 111

Query: 444  VDVERISKRKPGEVLPPHEPLVVKRAVNHFLQKNEGDIMVIDVRRVPADFHARYKAQERT 623
            VD++RISKR+PGEVL PHEP VV RAVNHFLQK + D+MVIDVR VP+DFHAR+KAQER 
Sbjct: 112  VDIQRISKRRPGEVLTPHEPAVVGRAVNHFLQKQDSDLMVIDVRCVPSDFHARFKAQERI 171

Query: 624  YFYRLLSGPEPVSSFERNRAWHVPENLDLLAMQKACKILVGRHDFSSFRAAACQANSPIR 803
            YFYRLLSGPEP+S+FE++RAWHVPE L L AMQ+AC++LVG HDFSSFRAA CQA SPIR
Sbjct: 172  YFYRLLSGPEPLSTFEKDRAWHVPEELSLPAMQEACRVLVGFHDFSSFRAAGCQAKSPIR 231

Query: 804  TLEELNVTEVVSTPYFPSISERLKGSCVMEDPSVSLGSDTSHSHISLNTNEEKLEGSNGE 983
            TL+EL+V EV+ +PYFPS+ +R + + V  D      +  +    + N + +K+  S+ +
Sbjct: 232  TLDELSVNEVIESPYFPSLMDREQHNKVSGDLRSCPNNSETDIPPTSNPSIDKVMASSQD 291

Query: 984  ACQEFGLRKRHRCFVVTARARSFLYHQVRLLVGVLKSVGAGDLTVPDVKRILEAKSITAA 1163
                FG R+RHRC VVTARAR+FLYHQVRLLVGVLK+VG G+LT+PDV+RIL A+++TAA
Sbjct: 292  V--GFGKRRRHRCLVVTARARAFLYHQVRLLVGVLKAVGTGNLTIPDVERILNARTVTAA 349

Query: 1164 SPMAPACGLYLGHVKYNLP 1220
            SPMAPACGLYLG VKY+LP
Sbjct: 350  SPMAPACGLYLGEVKYDLP 368


>ref|XP_002331109.1| predicted protein [Populus trichocarpa]
          Length = 326

 Score =  462 bits (1189), Expect = e-127
 Identities = 232/321 (72%), Positives = 264/321 (82%)
 Frame = +3

Query: 249  PRLQRYLIAIEYIGTRFAGAQQQPNCRTVVGVLEEAFQKFVGQPVSVFCSSRTDAGVHSL 428
            P LQRYL+A+EYIGTRF G+QQQ N RTVVGVL+EAF KF+GQPV++  SSRTDAGVH+L
Sbjct: 3    PGLQRYLVAVEYIGTRFCGSQQQLNHRTVVGVLQEAFHKFIGQPVTICLSSRTDAGVHAL 62

Query: 429  SNVCHVDVERISKRKPGEVLPPHEPLVVKRAVNHFLQKNEGDIMVIDVRRVPADFHARYK 608
            SNVCHVDVERISKRKPGEVLPPHEP VV++AVNHFLQK EGDIMV DVR V A FHAR+K
Sbjct: 63   SNVCHVDVERISKRKPGEVLPPHEPAVVRKAVNHFLQKKEGDIMVTDVRSVSAHFHARFK 122

Query: 609  AQERTYFYRLLSGPEPVSSFERNRAWHVPENLDLLAMQKACKILVGRHDFSSFRAAACQA 788
            AQERTYFYRLL GPE +S+FE++RAWHV E LDL++MQ+ACK+LVG HDFSSFRA+ CQA
Sbjct: 123  AQERTYFYRLLIGPELLSTFEKDRAWHVSEELDLVSMQEACKVLVGHHDFSSFRASGCQA 182

Query: 789  NSPIRTLEELNVTEVVSTPYFPSISERLKGSCVMEDPSVSLGSDTSHSHISLNTNEEKLE 968
             SP RTLEEL+V EVVSTPYFPSI+ER + S   E P        +       +N     
Sbjct: 183  KSPFRTLEELSVLEVVSTPYFPSITEREQNSSNGEGPHSFHNKCKTGLPTGSISNGFMAG 242

Query: 969  GSNGEACQEFGLRKRHRCFVVTARARSFLYHQVRLLVGVLKSVGAGDLTVPDVKRILEAK 1148
            GSN      FG+R+RHRC+V+TAR+RSFLYHQVRLLVGVLKSVG GDLTV DV+RIL A+
Sbjct: 243  GSNSGTDLGFGIRRRHRCYVITARSRSFLYHQVRLLVGVLKSVGTGDLTVSDVERILNAR 302

Query: 1149 SITAASPMAPACGLYLGHVKY 1211
            SITAASPMAPACGLYLGHVKY
Sbjct: 303  SITAASPMAPACGLYLGHVKY 323