BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atropa21_contig00033957
         (731 letters)

Database: nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006346977.1| PREDICTED: RNA pseudouridine synthase 5-like...   443   e-122
ref|XP_004233537.1| PREDICTED: RNA pseudourine synthase 5-like [...   442   e-122
ref|XP_006346975.1| PREDICTED: RNA pseudouridine synthase 5-like...   437   e-120
ref|XP_006346978.1| PREDICTED: RNA pseudouridine synthase 5-like...   410   e-112
emb|CBI31488.3| unnamed protein product [Vitis vinifera]              344   2e-92
ref|XP_002276664.1| PREDICTED: RNA pseudourine synthase 5-like [...   343   3e-92
ref|XP_004307403.1| PREDICTED: RNA pseudourine synthase 5-like [...   338   8e-91
ref|XP_006403820.1| hypothetical protein EUTSA_v10010446mg [Eutr...   338   1e-90
ref|XP_006485880.1| PREDICTED: RNA pseudouridine synthase 5-like...   337   2e-90
ref|XP_006291291.1| hypothetical protein CARUB_v10017427mg [Caps...   337   2e-90
ref|XP_006485879.1| PREDICTED: RNA pseudouridine synthase 5-like...   333   4e-89
ref|XP_002312025.1| hypothetical protein POPTR_0008s04160g [Popu...   331   1e-88
ref|NP_974416.1| RNA pseudourine synthase 5 [Arabidopsis thalian...   331   2e-88
ref|XP_002877851.1| pseudouridine synthase family protein [Arabi...   329   5e-88
gb|EXB80105.1| RNA pseudourine synthase 5 [Morus notabilis]           328   1e-87
gb|EOY18594.1| Pseudouridine synthase family protein [Theobroma ...   326   5e-87
ref|XP_004496322.1| PREDICTED: RNA pseudourine synthase 5-like [...   325   7e-87
emb|CAC07917.1| putative protein [Arabidopsis thaliana]               324   2e-86
ref|XP_003591952.1| RNA pseudourine synthase [Medicago truncatul...   323   4e-86
gb|ESW15679.1| hypothetical protein PHAVU_007G093000g [Phaseolus...   320   4e-85

>ref|XP_006346977.1| PREDICTED: RNA pseudouridine synthase 5-like isoform X3 [Solanum
           tuberosum]
          Length = 374

 Score =  443 bits (1140), Expect = e-122
 Identities = 221/242 (91%), Positives = 227/242 (93%)
 Frame = -2

Query: 730 RIQNKQITIDGKVTTLHDTKLRAGAELVYHRLPWREPDAPYLLQVLFEDDYLIAVNKPSG 551
           RIQNKQITIDGKV  L DT+LRAGAELVYHRLPWREPDAPYLL+VLF+DDYLI VNKPSG
Sbjct: 60  RIQNKQITIDGKVVILPDTELRAGAELVYHRLPWREPDAPYLLEVLFQDDYLIVVNKPSG 119

Query: 550 LQVLPGGLYQQRTVLTQLQWHVRMLTTTSSGCQKTHPVPVHRLGRGTSGILLCAKTKLSK 371
           LQVLPGGLYQQRTVLTQLQWH    TTTSSGCQKTHPVPVHRLGRGTSGILLCAKTKL K
Sbjct: 120 LQVLPGGLYQQRTVLTQLQWHACKPTTTSSGCQKTHPVPVHRLGRGTSGILLCAKTKLCK 179

Query: 370 SRLAAYFADGTSVVEDKYTNSECNTMRKICKIYRALVSGVMDVDEVVIKQSIGRIKYPGV 191
           SRLAAYFA+GTSVVEDK TNSECNTMRKICKIYRALVSGVMD+DEVVIKQ IG IKYPGV
Sbjct: 180 SRLAAYFAEGTSVVEDKCTNSECNTMRKICKIYRALVSGVMDMDEVVIKQPIGTIKYPGV 239

Query: 190 AKGLYVASPSGKPALSSVRALERDLENSCTLVQVEIQSGRPHQIRIHLSFIGLPLIGDPL 11
           AKGLYVASPSGKPALSSVR LERD EN+CTLVQVEIQSGRPHQIRIHLSFIG PLIGDPL
Sbjct: 240 AKGLYVASPSGKPALSSVRVLERDSENNCTLVQVEIQSGRPHQIRIHLSFIGYPLIGDPL 299

Query: 10  YV 5
           YV
Sbjct: 300 YV 301


>ref|XP_004233537.1| PREDICTED: RNA pseudourine synthase 5-like [Solanum lycopersicum]
          Length = 402

 Score =  442 bits (1137), Expect = e-122
 Identities = 220/242 (90%), Positives = 227/242 (93%)
 Frame = -2

Query: 730 RIQNKQITIDGKVTTLHDTKLRAGAELVYHRLPWREPDAPYLLQVLFEDDYLIAVNKPSG 551
           RIQNKQITIDGKV  L DT+LRAGAELVYHRLPWREPDAPYLL+VLFEDDYLI VNKPSG
Sbjct: 83  RIQNKQITIDGKVVILPDTELRAGAELVYHRLPWREPDAPYLLEVLFEDDYLIVVNKPSG 142

Query: 550 LQVLPGGLYQQRTVLTQLQWHVRMLTTTSSGCQKTHPVPVHRLGRGTSGILLCAKTKLSK 371
           LQVLPGGLYQQRTVLTQLQWH   LTTTSSGCQKTHPVPVHRLGRGTSGILLCAKTKL K
Sbjct: 143 LQVLPGGLYQQRTVLTQLQWHACKLTTTSSGCQKTHPVPVHRLGRGTSGILLCAKTKLCK 202

Query: 370 SRLAAYFADGTSVVEDKYTNSECNTMRKICKIYRALVSGVMDVDEVVIKQSIGRIKYPGV 191
           SRLAAYFA+GTSVVE+K TNSECNTMRKICKIYRALVSGVMD+DE VIKQ IG IKYPGV
Sbjct: 203 SRLAAYFAEGTSVVEEKCTNSECNTMRKICKIYRALVSGVMDMDEAVIKQPIGTIKYPGV 262

Query: 190 AKGLYVASPSGKPALSSVRALERDLENSCTLVQVEIQSGRPHQIRIHLSFIGLPLIGDPL 11
           AKGLYVASPSGKPALSSVR LERD E++CTLVQVEIQSGRPHQIRIHLSFIG PLIGDPL
Sbjct: 263 AKGLYVASPSGKPALSSVRVLERDSESNCTLVQVEIQSGRPHQIRIHLSFIGYPLIGDPL 322

Query: 10  YV 5
           YV
Sbjct: 323 YV 324


>ref|XP_006346975.1| PREDICTED: RNA pseudouridine synthase 5-like isoform X1 [Solanum
           tuberosum] gi|565360441|ref|XP_006346976.1| PREDICTED:
           RNA pseudouridine synthase 5-like isoform X2 [Solanum
           tuberosum]
          Length = 379

 Score =  437 bits (1124), Expect = e-120
 Identities = 221/247 (89%), Positives = 227/247 (91%), Gaps = 5/247 (2%)
 Frame = -2

Query: 730 RIQNKQITIDGKVTTLHDTKL-----RAGAELVYHRLPWREPDAPYLLQVLFEDDYLIAV 566
           RIQNKQITIDGKV  L DT+L     RAGAELVYHRLPWREPDAPYLL+VLF+DDYLI V
Sbjct: 60  RIQNKQITIDGKVVILPDTELSFWMCRAGAELVYHRLPWREPDAPYLLEVLFQDDYLIVV 119

Query: 565 NKPSGLQVLPGGLYQQRTVLTQLQWHVRMLTTTSSGCQKTHPVPVHRLGRGTSGILLCAK 386
           NKPSGLQVLPGGLYQQRTVLTQLQWH    TTTSSGCQKTHPVPVHRLGRGTSGILLCAK
Sbjct: 120 NKPSGLQVLPGGLYQQRTVLTQLQWHACKPTTTSSGCQKTHPVPVHRLGRGTSGILLCAK 179

Query: 385 TKLSKSRLAAYFADGTSVVEDKYTNSECNTMRKICKIYRALVSGVMDVDEVVIKQSIGRI 206
           TKL KSRLAAYFA+GTSVVEDK TNSECNTMRKICKIYRALVSGVMD+DEVVIKQ IG I
Sbjct: 180 TKLCKSRLAAYFAEGTSVVEDKCTNSECNTMRKICKIYRALVSGVMDMDEVVIKQPIGTI 239

Query: 205 KYPGVAKGLYVASPSGKPALSSVRALERDLENSCTLVQVEIQSGRPHQIRIHLSFIGLPL 26
           KYPGVAKGLYVASPSGKPALSSVR LERD EN+CTLVQVEIQSGRPHQIRIHLSFIG PL
Sbjct: 240 KYPGVAKGLYVASPSGKPALSSVRVLERDSENNCTLVQVEIQSGRPHQIRIHLSFIGYPL 299

Query: 25  IGDPLYV 5
           IGDPLYV
Sbjct: 300 IGDPLYV 306


>ref|XP_006346978.1| PREDICTED: RNA pseudouridine synthase 5-like isoform X4 [Solanum
           tuberosum]
          Length = 349

 Score =  410 bits (1054), Expect = e-112
 Identities = 203/220 (92%), Positives = 208/220 (94%)
 Frame = -2

Query: 664 AGAELVYHRLPWREPDAPYLLQVLFEDDYLIAVNKPSGLQVLPGGLYQQRTVLTQLQWHV 485
           AGAELVYHRLPWREPDAPYLL+VLF+DDYLI VNKPSGLQVLPGGLYQQRTVLTQLQWH 
Sbjct: 57  AGAELVYHRLPWREPDAPYLLEVLFQDDYLIVVNKPSGLQVLPGGLYQQRTVLTQLQWHA 116

Query: 484 RMLTTTSSGCQKTHPVPVHRLGRGTSGILLCAKTKLSKSRLAAYFADGTSVVEDKYTNSE 305
              TTTSSGCQKTHPVPVHRLGRGTSGILLCAKTKL KSRLAAYFA+GTSVVEDK TNSE
Sbjct: 117 CKPTTTSSGCQKTHPVPVHRLGRGTSGILLCAKTKLCKSRLAAYFAEGTSVVEDKCTNSE 176

Query: 304 CNTMRKICKIYRALVSGVMDVDEVVIKQSIGRIKYPGVAKGLYVASPSGKPALSSVRALE 125
           CNTMRKICKIYRALVSGVMD+DEVVIKQ IG IKYPGVAKGLYVASPSGKPALSSVR LE
Sbjct: 177 CNTMRKICKIYRALVSGVMDMDEVVIKQPIGTIKYPGVAKGLYVASPSGKPALSSVRVLE 236

Query: 124 RDLENSCTLVQVEIQSGRPHQIRIHLSFIGLPLIGDPLYV 5
           RD EN+CTLVQVEIQSGRPHQIRIHLSFIG PLIGDPLYV
Sbjct: 237 RDSENNCTLVQVEIQSGRPHQIRIHLSFIGYPLIGDPLYV 276


>emb|CBI31488.3| unnamed protein product [Vitis vinifera]
          Length = 347

 Score =  344 bits (882), Expect = 2e-92
 Identities = 173/243 (71%), Positives = 204/243 (83%), Gaps = 1/243 (0%)
 Frame = -2

Query: 730 RIQNKQITIDGKVTTLHDTKLRAGAELVYHRLPWREPDAPYLLQVLFEDDYLIAVNKPSG 551
           RI   QIT+DG V T   T LRAG++LVYHRLPW+EPDAPYLL++L+EDD +IA+NKPSG
Sbjct: 51  RINKGQITVDGTVVTEPKTILRAGSKLVYHRLPWQEPDAPYLLEILYEDDDVIALNKPSG 110

Query: 550 LQVLPGGLYQQRTVLTQLQWHVRMLTTTSSGCQKTHPVPVHRLGRGTSGILLCAKTKLSK 371
           LQVLPGGL+QQRTVLTQLQW      +  + CQ++H VPVHRLGRGTSGILLCAKTKL+K
Sbjct: 111 LQVLPGGLFQQRTVLTQLQWRANKQNSLPA-CQESHSVPVHRLGRGTSGILLCAKTKLAK 169

Query: 370 SRLAAYFADGTSVVE-DKYTNSECNTMRKICKIYRALVSGVMDVDEVVIKQSIGRIKYPG 194
           +RLAAYFADGTSVV  ++  + +  TMRKI KIYRALV+G++D DE+VI+Q IG ++YPG
Sbjct: 170 TRLAAYFADGTSVVGGNRDADMKSRTMRKISKIYRALVNGILDKDEIVIEQPIGMVQYPG 229

Query: 193 VAKGLYVASPSGKPALSSVRALERDLENSCTLVQVEIQSGRPHQIRIHLSFIGLPLIGDP 14
           VAKGLYVASPSGKPALS V  LERD++    +VQVEIQSGRPHQIRIHLSFIG PL+GDP
Sbjct: 230 VAKGLYVASPSGKPALSKVSILERDVQGDHMIVQVEIQSGRPHQIRIHLSFIGHPLLGDP 289

Query: 13  LYV 5
           LYV
Sbjct: 290 LYV 292


>ref|XP_002276664.1| PREDICTED: RNA pseudourine synthase 5-like [Vitis vinifera]
          Length = 348

 Score =  343 bits (880), Expect = 3e-92
 Identities = 173/244 (70%), Positives = 203/244 (83%), Gaps = 2/244 (0%)
 Frame = -2

Query: 730 RIQNKQITIDGKVTTLHDTKLRAGAELVYHRLPWREPDAPYLLQVLFEDDYLIAVNKPSG 551
           RI   QIT+DG V T   T LRAG++LVYHRLPW+EPDAPYLL++L+EDD +IA+NKPSG
Sbjct: 51  RINKGQITVDGTVVTEPKTILRAGSKLVYHRLPWQEPDAPYLLEILYEDDDVIALNKPSG 110

Query: 550 LQVLPGGLYQQRTVLTQLQWHVRMLTTTSSGCQKTHPVPVHRLGRGTSGILLCAKTKLSK 371
           LQVLPGGL+QQRTVLTQLQW      +  + CQ++H VPVHRLGRGTSGILLCAKTKL+K
Sbjct: 111 LQVLPGGLFQQRTVLTQLQWRANKQNSLPA-CQESHSVPVHRLGRGTSGILLCAKTKLAK 169

Query: 370 SRLAAYFADGTSVVEDKYTNSECN--TMRKICKIYRALVSGVMDVDEVVIKQSIGRIKYP 197
           +RLAAYFADGTSVV     +++    TMRKI KIYRALV+G++D DE+VI+Q IG ++YP
Sbjct: 170 TRLAAYFADGTSVVGGNRLDADMKSRTMRKISKIYRALVNGILDKDEIVIEQPIGMVQYP 229

Query: 196 GVAKGLYVASPSGKPALSSVRALERDLENSCTLVQVEIQSGRPHQIRIHLSFIGLPLIGD 17
           GVAKGLYVASPSGKPALS V  LERD++    +VQVEIQSGRPHQIRIHLSFIG PL+GD
Sbjct: 230 GVAKGLYVASPSGKPALSKVSILERDVQGDHMIVQVEIQSGRPHQIRIHLSFIGHPLLGD 289

Query: 16  PLYV 5
           PLYV
Sbjct: 290 PLYV 293


>ref|XP_004307403.1| PREDICTED: RNA pseudourine synthase 5-like [Fragaria vesca subsp.
           vesca]
          Length = 375

 Score =  338 bits (868), Expect = 8e-91
 Identities = 169/243 (69%), Positives = 202/243 (83%), Gaps = 1/243 (0%)
 Frame = -2

Query: 730 RIQNKQITIDGKVTTLHDTKLRAGAELVYHRLPWREPDAPYLLQVLFEDDYLIAVNKPSG 551
           RI+N QIT+DG+V    DT LR G+ELVYHRLPW EPDAPYLL+VL+EDD +IA+NKP G
Sbjct: 59  RIRNGQITVDGEVVRDSDTILRVGSELVYHRLPWGEPDAPYLLEVLYEDDDMIALNKPGG 118

Query: 550 LQVLPGGLYQQRTVLTQLQWHVRMLTTTSSGCQKTHPVPVHRLGRGTSGILLCAKTKLSK 371
           LQVLPGGL+QQRTVLTQL W           CQK+H VPVHRLGRGTSGILLCAKTK +K
Sbjct: 119 LQVLPGGLFQQRTVLTQLLWRESQ-KFDHLACQKSHLVPVHRLGRGTSGILLCAKTKHAK 177

Query: 370 SRLAAYFADGTSVV-EDKYTNSECNTMRKICKIYRALVSGVMDVDEVVIKQSIGRIKYPG 194
           ++LAAYFADGTS + +D  TN++ +T RKI KIYRALV+G++  DEV++KQ IG ++YPG
Sbjct: 178 TQLAAYFADGTSHIGDDSTTNTKLHTTRKITKIYRALVTGIICEDEVIVKQPIGTVRYPG 237

Query: 193 VAKGLYVASPSGKPALSSVRALERDLENSCTLVQVEIQSGRPHQIRIHLSFIGLPLIGDP 14
           VAKGLY+ASP+GKPALS V  L+RD++ + T+VQVEIQSGRPHQIRIHLSFIG PL+GDP
Sbjct: 238 VAKGLYIASPAGKPALSKVEVLDRDIQKNHTIVQVEIQSGRPHQIRIHLSFIGHPLLGDP 297

Query: 13  LYV 5
           LYV
Sbjct: 298 LYV 300


>ref|XP_006403820.1| hypothetical protein EUTSA_v10010446mg [Eutrema salsugineum]
           gi|557104939|gb|ESQ45273.1| hypothetical protein
           EUTSA_v10010446mg [Eutrema salsugineum]
          Length = 382

 Score =  338 bits (866), Expect = 1e-90
 Identities = 166/242 (68%), Positives = 203/242 (83%)
 Frame = -2

Query: 730 RIQNKQITIDGKVTTLHDTKLRAGAELVYHRLPWREPDAPYLLQVLFEDDYLIAVNKPSG 551
           RIQN QI IDG+V   H+T LR G++LVYHRLPW+EPD PY L+VL+ED+ LIA+NKPSG
Sbjct: 60  RIQNGQIQIDGEVVKDHNTLLRRGSKLVYHRLPWKEPDTPYSLEVLYEDNDLIALNKPSG 119

Query: 550 LQVLPGGLYQQRTVLTQLQWHVRMLTTTSSGCQKTHPVPVHRLGRGTSGILLCAKTKLSK 371
           LQVLPGGL+QQRT+LTQLQW       +S+G +++HPVPVHRLGRGTSGILLCAKTKL+K
Sbjct: 120 LQVLPGGLFQQRTLLTQLQWCFSK-KDSSTGARESHPVPVHRLGRGTSGILLCAKTKLAK 178

Query: 370 SRLAAYFADGTSVVEDKYTNSECNTMRKICKIYRALVSGVMDVDEVVIKQSIGRIKYPGV 191
           ++LA+YFA+GTS+V     + EC T RKI KIYRAL  G+++ DEVVIKQ IG ++YPGV
Sbjct: 179 TKLASYFAEGTSLVGFGNLDQECGTGRKISKIYRALADGIVEEDEVVIKQPIGVVRYPGV 238

Query: 190 AKGLYVASPSGKPALSSVRALERDLENSCTLVQVEIQSGRPHQIRIHLSFIGLPLIGDPL 11
           AKGLYVAS  GKPALS V  LER+++ +CTLV+VEIQSGRPHQIRIHL+++G PL+GDPL
Sbjct: 239 AKGLYVASSEGKPALSKVAVLERNMQRNCTLVKVEIQSGRPHQIRIHLAYMGHPLVGDPL 298

Query: 10  YV 5
           YV
Sbjct: 299 YV 300


>ref|XP_006485880.1| PREDICTED: RNA pseudouridine synthase 5-like isoform X2 [Citrus
           sinensis] gi|568865018|ref|XP_006485881.1| PREDICTED:
           RNA pseudouridine synthase 5-like isoform X3 [Citrus
           sinensis]
          Length = 389

 Score =  337 bits (865), Expect = 2e-90
 Identities = 171/242 (70%), Positives = 201/242 (83%)
 Frame = -2

Query: 730 RIQNKQITIDGKVTTLHDTKLRAGAELVYHRLPWREPDAPYLLQVLFEDDYLIAVNKPSG 551
           RIQN QIT+DG+V    +  L AG+ELVYHRLPW+EPD PYLL+V +EDD LIA+NKPSG
Sbjct: 59  RIQNGQITVDGRVVNDPNIILSAGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSG 118

Query: 550 LQVLPGGLYQQRTVLTQLQWHVRMLTTTSSGCQKTHPVPVHRLGRGTSGILLCAKTKLSK 371
           LQVLPGGL+QQRTVL QLQW     +++ S  Q +HPVPVHRLGRGTSGILLCAKTKL+K
Sbjct: 119 LQVLPGGLFQQRTVLKQLQWRASKQSSSLSS-QASHPVPVHRLGRGTSGILLCAKTKLAK 177

Query: 370 SRLAAYFADGTSVVEDKYTNSECNTMRKICKIYRALVSGVMDVDEVVIKQSIGRIKYPGV 191
           + +AAYFAD TSVV+   T  E +  RKI KIYRALV G++D D+V+IKQ IG ++YPGV
Sbjct: 178 TCIAAYFADKTSVVDADNTVMELS-QRKITKIYRALVHGIVDEDKVIIKQPIGIVRYPGV 236

Query: 190 AKGLYVASPSGKPALSSVRALERDLENSCTLVQVEIQSGRPHQIRIHLSFIGLPLIGDPL 11
           AKGLYVASPSGKPALS V  LERD++ +CTLVQVEIQSGRPHQIRIHL+F+G PL+GDPL
Sbjct: 237 AKGLYVASPSGKPALSKVDVLERDVQRNCTLVQVEIQSGRPHQIRIHLAFLGHPLLGDPL 296

Query: 10  YV 5
           YV
Sbjct: 297 YV 298


>ref|XP_006291291.1| hypothetical protein CARUB_v10017427mg [Capsella rubella]
           gi|482559998|gb|EOA24189.1| hypothetical protein
           CARUB_v10017427mg [Capsella rubella]
          Length = 382

 Score =  337 bits (864), Expect = 2e-90
 Identities = 168/242 (69%), Positives = 199/242 (82%)
 Frame = -2

Query: 730 RIQNKQITIDGKVTTLHDTKLRAGAELVYHRLPWREPDAPYLLQVLFEDDYLIAVNKPSG 551
           RIQN QI IDG+V     T LR+G++LVYHRLPW+EPD PY L++L+EDD LIA+NKPSG
Sbjct: 58  RIQNGQIQIDGEVVKDPKTVLRSGSKLVYHRLPWKEPDTPYSLEILYEDDDLIALNKPSG 117

Query: 550 LQVLPGGLYQQRTVLTQLQWHVRMLTTTSSGCQKTHPVPVHRLGRGTSGILLCAKTKLSK 371
           LQVLPGGL+QQRT+LTQLQW        S+G  ++HPVPVHRLGRGTSGILLCAKTKL+K
Sbjct: 118 LQVLPGGLFQQRTLLTQLQWWFGK-KDFSTGSPESHPVPVHRLGRGTSGILLCAKTKLAK 176

Query: 370 SRLAAYFADGTSVVEDKYTNSECNTMRKICKIYRALVSGVMDVDEVVIKQSIGRIKYPGV 191
           ++LAAYFA+GTS+V     + +C T RK+ KIYRAL  G+++ DEVVI+Q IG ++YPGV
Sbjct: 177 TKLAAYFAEGTSLVGSGNLDQDCGTGRKLSKIYRALADGIVEEDEVVIQQPIGVVRYPGV 236

Query: 190 AKGLYVASPSGKPALSSVRALERDLENSCTLVQVEIQSGRPHQIRIHLSFIGLPLIGDPL 11
           AKGLYVASP GKPA S V  LERD E SCTLV+VEIQSGRPHQIRIHL++IG PLIGDPL
Sbjct: 237 AKGLYVASPEGKPAFSKVVVLERDREKSCTLVKVEIQSGRPHQIRIHLAYIGHPLIGDPL 296

Query: 10  YV 5
           YV
Sbjct: 297 YV 298


>ref|XP_006485879.1| PREDICTED: RNA pseudouridine synthase 5-like isoform X1 [Citrus
           sinensis]
          Length = 390

 Score =  333 bits (853), Expect = 4e-89
 Identities = 171/243 (70%), Positives = 201/243 (82%), Gaps = 1/243 (0%)
 Frame = -2

Query: 730 RIQNKQITIDGKVTTLHDTKLRAGAELVYHRLPWREPDAPYLLQVLFEDDYLIAVNKPSG 551
           RIQN QIT+DG+V    +  L AG+ELVYHRLPW+EPD PYLL+V +EDD LIA+NKPSG
Sbjct: 59  RIQNGQITVDGRVVNDPNIILSAGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSG 118

Query: 550 LQVLPGGLYQQRTVLTQLQWHVRMLTTTSSGCQKTHPVPVHRLGRGTSGILLCAKTKLSK 371
           LQVLPGGL+QQRTVL QLQW     +++ S  Q +HPVPVHRLGRGTSGILLCAKTKL+K
Sbjct: 119 LQVLPGGLFQQRTVLKQLQWRASKQSSSLSS-QASHPVPVHRLGRGTSGILLCAKTKLAK 177

Query: 370 SRLAAYFADGTSVVEDKYTNSECNTMRKICKIYRALVSGVMDVDEVVIKQSIGRIKYPGV 191
           + +AAYFAD TSVV+   T  E  + RKI KIYRALV G++D D+V+IKQ IG ++YPGV
Sbjct: 178 TCIAAYFADKTSVVDADNTVMEL-SQRKITKIYRALVHGIVDEDKVIIKQPIGIVRYPGV 236

Query: 190 AKGLYVASPSGKPALSSVRALERDLENSCTLV-QVEIQSGRPHQIRIHLSFIGLPLIGDP 14
           AKGLYVASPSGKPALS V  LERD++ +CTLV QVEIQSGRPHQIRIHL+F+G PL+GDP
Sbjct: 237 AKGLYVASPSGKPALSKVDVLERDVQRNCTLVQQVEIQSGRPHQIRIHLAFLGHPLLGDP 296

Query: 13  LYV 5
           LYV
Sbjct: 297 LYV 299


>ref|XP_002312025.1| hypothetical protein POPTR_0008s04160g [Populus trichocarpa]
           gi|222851845|gb|EEE89392.1| hypothetical protein
           POPTR_0008s04160g [Populus trichocarpa]
          Length = 377

 Score =  331 bits (849), Expect = 1e-88
 Identities = 169/242 (69%), Positives = 197/242 (81%), Gaps = 1/242 (0%)
 Frame = -2

Query: 730 RIQNKQITIDGKVTTLHDTKLRAGAELVYHRLPWREPDAPYLLQVLFEDDYLIAVNKPSG 551
           RI N QITIDG+V       LR G ELVYHRLPWREPDAPYLLQVL+EDD ++A+NKP G
Sbjct: 61  RIHNGQITIDGEVVKEPKAILRDGMELVYHRLPWREPDAPYLLQVLYEDDDMVALNKPPG 120

Query: 550 LQVLPGGLYQQRTVLTQLQWHVRMLTTTSSGCQKTHPVPVHRLGRGTSGILLCAKTKLSK 371
           LQVLPGGL+QQRTVL QLQW      ++S   Q +HPVPVHRLGRGTSGILLCAKTK++K
Sbjct: 121 LQVLPGGLFQQRTVLMQLQWRASK-GSSSLAIQGSHPVPVHRLGRGTSGILLCAKTKVAK 179

Query: 370 SRLAAYFADGTSVVEDKYT-NSECNTMRKICKIYRALVSGVMDVDEVVIKQSIGRIKYPG 194
           + LAAYFADGTS++ D    N E +  RKI KIYRALV+G+++ D+++IKQ IG ++YPG
Sbjct: 180 TSLAAYFADGTSLIGDSSNANMEQSKRRKISKIYRALVNGILNQDKIIIKQPIGTMRYPG 239

Query: 193 VAKGLYVASPSGKPALSSVRALERDLENSCTLVQVEIQSGRPHQIRIHLSFIGLPLIGDP 14
           VAKGLYVASPSGKPALS V  LERD + + TLVQVEI+SGRPHQIRIHLSFIG PL+GDP
Sbjct: 240 VAKGLYVASPSGKPALSKVEVLERDSQLNQTLVQVEIESGRPHQIRIHLSFIGHPLLGDP 299

Query: 13  LY 8
           LY
Sbjct: 300 LY 301


>ref|NP_974416.1| RNA pseudourine synthase 5 [Arabidopsis thaliana]
           gi|229891781|sp|Q5M721.2|PUS5_ARATH RecName: Full=RNA
           pseudouridine synthase 5; AltName: Full=RNA
           pseudouridylate synthase 5; AltName: Full=RNA-uridine
           isomerase 5 gi|332645400|gb|AEE78921.1| RNA pseudourine
           synthase 5 [Arabidopsis thaliana]
          Length = 369

 Score =  331 bits (848), Expect = 2e-88
 Identities = 164/242 (67%), Positives = 196/242 (80%)
 Frame = -2

Query: 730 RIQNKQITIDGKVTTLHDTKLRAGAELVYHRLPWREPDAPYLLQVLFEDDYLIAVNKPSG 551
           RIQN QI IDG+V    +T LR+G++LVY RLPW+EPD PY L+VL+EDD LIA+NKPSG
Sbjct: 55  RIQNGQIQIDGEVVKDPNTLLRSGSKLVYSRLPWKEPDTPYSLEVLYEDDDLIALNKPSG 114

Query: 550 LQVLPGGLYQQRTVLTQLQWHVRMLTTTSSGCQKTHPVPVHRLGRGTSGILLCAKTKLSK 371
           LQVLPGGL+QQRTVLTQLQW      +     +  HPVPVHRLGRGTSGILLCAKTKL+K
Sbjct: 115 LQVLPGGLFQQRTVLTQLQWCFGKNDSYIGSRESPHPVPVHRLGRGTSGILLCAKTKLAK 174

Query: 370 SRLAAYFADGTSVVEDKYTNSECNTMRKICKIYRALVSGVMDVDEVVIKQSIGRIKYPGV 191
           ++LAAYFA+GTS+V     + EC T RK+ KIYRAL  G+++ DEVVIKQ IG ++YPGV
Sbjct: 175 TKLAAYFAEGTSLVGSGNLDQECGTGRKLSKIYRALADGIVEEDEVVIKQPIGVVRYPGV 234

Query: 190 AKGLYVASPSGKPALSSVRALERDLENSCTLVQVEIQSGRPHQIRIHLSFIGLPLIGDPL 11
           A+GLYVASP GKPA S V  LERD E +C+LV+VEIQSGRPHQIRIHL+++G PL+GDPL
Sbjct: 235 AQGLYVASPEGKPAFSKVFVLERDREKNCSLVKVEIQSGRPHQIRIHLAYMGHPLVGDPL 294

Query: 10  YV 5
           YV
Sbjct: 295 YV 296


>ref|XP_002877851.1| pseudouridine synthase family protein [Arabidopsis lyrata subsp.
           lyrata] gi|297323689|gb|EFH54110.1| pseudouridine
           synthase family protein [Arabidopsis lyrata subsp.
           lyrata]
          Length = 387

 Score =  329 bits (844), Expect = 5e-88
 Identities = 165/248 (66%), Positives = 196/248 (79%), Gaps = 6/248 (2%)
 Frame = -2

Query: 730 RIQNKQITIDGKVTTLHDTKLRAGAELVYHRLPWREPDAPYLLQVLFEDDYLIAVNKPSG 551
           RIQN QI IDG+V    +T LR+G++LVYHRLPW+EPD PY LQVL+EDD LIA+NKPSG
Sbjct: 58  RIQNGQIQIDGEVVKDPNTLLRSGSKLVYHRLPWKEPDTPYSLQVLYEDDDLIALNKPSG 117

Query: 550 LQVLPGGLYQQRTVLTQLQWHVRMLTTTSSGCQKTHPVPVHRLGRGTSGILLCAKTKLSK 371
           LQVLPGGL+QQRTVLTQLQW  R   + +   +  HPVPVHRLGRGTSGILLCAKTKL+K
Sbjct: 118 LQVLPGGLFQQRTVLTQLQWCFRKNDSYTGSRESPHPVPVHRLGRGTSGILLCAKTKLAK 177

Query: 370 SRLAAYFADGTSVVEDKYTNSECNTMRKICKIYRALVSGVMDVDEVVIKQSIGRIKYPGV 191
           ++LAAYFA+GTS+V       EC   RK+ KIYRAL  G+++ DEVVIKQ +G ++YPGV
Sbjct: 178 TKLAAYFAEGTSLVGSGNLEQECGKGRKLSKIYRALADGIVEEDEVVIKQPLGVVRYPGV 237

Query: 190 AKGLYVASPSGKPALSSVRALERDLENSCTLVQVEIQSGRPHQIRIHLSFIGLPLIG--- 20
           AKGLYVASP GKPA S V  LERD + +CTLV+VEIQSGRPHQIRIHL+++G PL+    
Sbjct: 238 AKGLYVASPEGKPAFSKVAVLERDKQKNCTLVKVEIQSGRPHQIRIHLAYMGHPLLASYN 297

Query: 19  ---DPLYV 5
              DPLYV
Sbjct: 298 CMRDPLYV 305


>gb|EXB80105.1| RNA pseudourine synthase 5 [Morus notabilis]
          Length = 377

 Score =  328 bits (841), Expect = 1e-87
 Identities = 165/243 (67%), Positives = 200/243 (82%), Gaps = 1/243 (0%)
 Frame = -2

Query: 730 RIQNKQITIDGKVTTLHDTKLRAGAELVYHRLPWREPDAPYLLQVLFEDDYLIAVNKPSG 551
           RI+N QIT++G+V    DT L  G+ELVYHRLPW+EP APY+L++L+ED  +IA++KPS 
Sbjct: 60  RIRNGQITVNGRVVRDPDTILSIGSELVYHRLPWKEPGAPYILEILYEDGDMIALDKPSE 119

Query: 550 LQVLPGGLYQQRTVLTQLQWHVRMLTTTSSGCQKTHPVPVHRLGRGTSGILLCAKTKLSK 371
           LQVLPGGL+QQRTVLTQLQW      ++S  C + +PVPVHRLGRGTSGILLCAKTK +K
Sbjct: 120 LQVLPGGLFQQRTVLTQLQWRATK-QSSSLVCCEPNPVPVHRLGRGTSGILLCAKTKFAK 178

Query: 370 SRLAAYFADGTSVVEDKYTNS-ECNTMRKICKIYRALVSGVMDVDEVVIKQSIGRIKYPG 194
           ++LAAYFADGTS V     N+ E N  RKI KIYRALV+G++  D+V+++Q IG ++YPG
Sbjct: 179 TQLAAYFADGTSYVGGNSKNNLELNARRKILKIYRALVTGIVCEDKVIVEQPIGTVQYPG 238

Query: 193 VAKGLYVASPSGKPALSSVRALERDLENSCTLVQVEIQSGRPHQIRIHLSFIGLPLIGDP 14
           VAKGLYVASPSGKPALS V  LERD+E +CTLV+VEIQSGRPHQIRIHLSFIG PL+GDP
Sbjct: 239 VAKGLYVASPSGKPALSKVEVLERDVEKNCTLVKVEIQSGRPHQIRIHLSFIGHPLLGDP 298

Query: 13  LYV 5
           LYV
Sbjct: 299 LYV 301


>gb|EOY18594.1| Pseudouridine synthase family protein [Theobroma cacao]
          Length = 378

 Score =  326 bits (835), Expect = 5e-87
 Identities = 164/243 (67%), Positives = 200/243 (82%), Gaps = 1/243 (0%)
 Frame = -2

Query: 730 RIQNKQITIDGKVTTLHDTKLRAGAELVYHRLPWREPDAPYLLQVLFEDDYLIAVNKPSG 551
           RIQN QI++DG+V    +T LR  +ELVYHRLPW+EPDAP+ L+VL+EDD +IA+NKPSG
Sbjct: 58  RIQNGQISVDGRVVRDPNTILRGSSELVYHRLPWKEPDAPHALEVLYEDDDMIALNKPSG 117

Query: 550 LQVLPGGLYQQRTVLTQLQWHVRMLTTTSSGCQKTHPVPVHRLGRGTSGILLCAKTKLSK 371
           LQVLPGGL+QQRTVLTQL W +R   T+S   Q++HPVPVHRLGRGTSGILLCAKTK +K
Sbjct: 118 LQVLPGGLFQQRTVLTQLSWRMRK-QTSSLASQESHPVPVHRLGRGTSGILLCAKTKAAK 176

Query: 370 SRLAAYFADGTSVV-EDKYTNSECNTMRKICKIYRALVSGVMDVDEVVIKQSIGRIKYPG 194
           + LAAYFADGTS++  +     + +  RKI KIYRALV+G++  D+VVI Q IG ++YPG
Sbjct: 177 TCLAAYFADGTSLIGANSNRKMQPSCTRKISKIYRALVTGILGEDKVVINQPIGIVQYPG 236

Query: 193 VAKGLYVASPSGKPALSSVRALERDLENSCTLVQVEIQSGRPHQIRIHLSFIGLPLIGDP 14
           VAKGLYVASPSGKPALS V  LE+D + + TLVQV+I+SGRPHQIRIHLSFIG PL+GDP
Sbjct: 237 VAKGLYVASPSGKPALSKVEVLEKDEQQNHTLVQVQIESGRPHQIRIHLSFIGHPLLGDP 296

Query: 13  LYV 5
           LY+
Sbjct: 297 LYI 299


>ref|XP_004496322.1| PREDICTED: RNA pseudourine synthase 5-like [Cicer arietinum]
          Length = 368

 Score =  325 bits (834), Expect = 7e-87
 Identities = 170/242 (70%), Positives = 198/242 (81%), Gaps = 1/242 (0%)
 Frame = -2

Query: 730 RIQNKQITIDGKVTTLHDTKLRAGAELVYHRLPWREPDAPYLLQVLFEDDYLIAVNKPSG 551
           RI++ QIT+D KV T  +T LRAG++LVYHRLPW+EPDAP+ +QVL+EDD +IA+NKPSG
Sbjct: 53  RIKSDQITVDAKVVTDPNTLLRAGSKLVYHRLPWKEPDAPHTIQVLYEDDDIIALNKPSG 112

Query: 550 LQVLPGGLYQQRTVLTQLQWHVRMLTTTSSGCQKTHPVPVHRLGRGTSGILLCAKTKLSK 371
           LQVLPGGL+QQRTVLTQLQW      T  +  QK HPVPVHRLGRGTSGILLCAKTKL++
Sbjct: 113 LQVLPGGLFQQRTVLTQLQWETNNKCTFEAH-QKPHPVPVHRLGRGTSGILLCAKTKLAR 171

Query: 370 SRLAAYFADGTSVVEDKY-TNSECNTMRKICKIYRALVSGVMDVDEVVIKQSIGRIKYPG 194
             LA+YFADGTS +  K  TN E   + KI KIYRALVSG++D D+V I Q IG +KYPG
Sbjct: 172 VHLASYFADGTSRIGGKRDTNQE---LGKIAKIYRALVSGIIDNDKVTIDQPIGMVKYPG 228

Query: 193 VAKGLYVASPSGKPALSSVRALERDLENSCTLVQVEIQSGRPHQIRIHLSFIGLPLIGDP 14
           VAKGLYVAS SGKPALS V  LER+++ + TLVQV+IQSGRPHQIRIHLSFIG PLIGDP
Sbjct: 229 VAKGLYVASQSGKPALSVVDILERNVKENSTLVQVKIQSGRPHQIRIHLSFIGHPLIGDP 288

Query: 13  LY 8
           LY
Sbjct: 289 LY 290


>emb|CAC07917.1| putative protein [Arabidopsis thaliana]
          Length = 376

 Score =  324 bits (830), Expect = 2e-86
 Identities = 164/249 (65%), Positives = 196/249 (78%), Gaps = 7/249 (2%)
 Frame = -2

Query: 730 RIQNKQITIDGKVTTLHDTKLRAGAELVYHRLPWREPDAPYLLQVLFEDDYLIAVNKPSG 551
           RIQN QI IDG+V    +T LR+G++LVY RLPW+EPD PY L+VL+EDD LIA+NKPSG
Sbjct: 55  RIQNGQIQIDGEVVKDPNTLLRSGSKLVYSRLPWKEPDTPYSLEVLYEDDDLIALNKPSG 114

Query: 550 LQVLPGGLYQQRTVLTQLQWHVRMLTTTSSGCQKTHPVPVHRLGRGTSGILLCAKTKLSK 371
           LQVLPGGL+QQRTVLTQLQW      +     +  HPVPVHRLGRGTSGILLCAKTKL+K
Sbjct: 115 LQVLPGGLFQQRTVLTQLQWCFGKNDSYIGSRESPHPVPVHRLGRGTSGILLCAKTKLAK 174

Query: 370 SRLAAYFADGTSVVEDKYTNSECNTMRKICKIYRALVSGVMDVDE-------VVIKQSIG 212
           ++LAAYFA+GTS+V     + EC T RK+ KIYRAL  G+++ DE       VVIKQ IG
Sbjct: 175 TKLAAYFAEGTSLVGSGNLDQECGTGRKLSKIYRALADGIVEEDEARPFLLFVVIKQPIG 234

Query: 211 RIKYPGVAKGLYVASPSGKPALSSVRALERDLENSCTLVQVEIQSGRPHQIRIHLSFIGL 32
            ++YPGVA+GLYVASP GKPA S V  LERD E +C+LV+VEIQSGRPHQIRIHL+++G 
Sbjct: 235 VVRYPGVAQGLYVASPEGKPAFSKVFVLERDREKNCSLVKVEIQSGRPHQIRIHLAYMGH 294

Query: 31  PLIGDPLYV 5
           PL+GDPLYV
Sbjct: 295 PLVGDPLYV 303


>ref|XP_003591952.1| RNA pseudourine synthase [Medicago truncatula]
           gi|358349060|ref|XP_003638558.1| RNA pseudourine
           synthase [Medicago truncatula]
           gi|355481000|gb|AES62203.1| RNA pseudourine synthase
           [Medicago truncatula] gi|355504493|gb|AES85696.1| RNA
           pseudourine synthase [Medicago truncatula]
          Length = 371

 Score =  323 bits (828), Expect = 4e-86
 Identities = 166/243 (68%), Positives = 202/243 (83%), Gaps = 2/243 (0%)
 Frame = -2

Query: 730 RIQNKQITIDGKVTTLHDTKLRAGAELVYHRLPWREPDAPYLLQVLFEDDYLIAVNKPSG 551
           RI++ QIT+D +V T  +T LR G++LVYHR+PW+EPDAP+ ++VL+EDD +IA+NKPSG
Sbjct: 53  RIKSDQITLDARVVTDPNTILRVGSKLVYHRIPWKEPDAPHTIEVLYEDDDIIALNKPSG 112

Query: 550 LQVLPGGLYQQRTVLTQLQWHVRMLTTTSSGCQKTHPVPVHRLGRGTSGILLCAKTKLSK 371
           LQVLPGGL+QQRTVLTQLQW     +T  +  QK HPVPVHRLGRGTSGILLCAKTKL++
Sbjct: 113 LQVLPGGLFQQRTVLTQLQWETNNKSTIEAH-QKPHPVPVHRLGRGTSGILLCAKTKLAR 171

Query: 370 SRLAAYFADGTSVVEDK-YTNSECNTMRKICKIYRALVSGVMDVDEVVIKQSIGRIKYPG 194
           +RLA+YFADGTS +E K +TN E   + KI KIYRALVSG+++ D+V I Q IG +KYPG
Sbjct: 172 ARLASYFADGTSRIEGKGHTNQE---LGKIAKIYRALVSGIINNDQVTINQPIGMVKYPG 228

Query: 193 VAKGLYVASPSGKPALSSVRALERDLENSCTLVQ-VEIQSGRPHQIRIHLSFIGLPLIGD 17
           VAKGLYVAS SGKPALS V  LER+++ + TLVQ V+IQSGRPHQIRIHLSFIG PL+GD
Sbjct: 229 VAKGLYVASQSGKPALSVVHVLERNVKENSTLVQVVKIQSGRPHQIRIHLSFIGHPLLGD 288

Query: 16  PLY 8
           PLY
Sbjct: 289 PLY 291


>gb|ESW15679.1| hypothetical protein PHAVU_007G093000g [Phaseolus vulgaris]
          Length = 365

 Score =  320 bits (819), Expect = 4e-85
 Identities = 164/242 (67%), Positives = 195/242 (80%), Gaps = 1/242 (0%)
 Frame = -2

Query: 730 RIQNKQITIDGKVTTLHDTKLRAGAELVYHRLPWREPDAPYLLQVLFEDDYLIAVNKPSG 551
           RI++ QIT DG+V T   T LR G++LVYHRLPW+EPDAP++++VL+EDD +IA+NKPSG
Sbjct: 53  RIKSGQITFDGRVVTDSSTVLRVGSKLVYHRLPWKEPDAPHMIEVLYEDDEMIALNKPSG 112

Query: 550 LQVLPGGLYQQRTVLTQLQWHVRMLTTTSSGCQKTHPVPVHRLGRGTSGILLCAKTKLSK 371
           LQVLPGGL+QQRTVLTQLQW   +        +K HPVPVHRLGRGTSGILLCAKTKL++
Sbjct: 113 LQVLPGGLFQQRTVLTQLQWEANLH-------KKPHPVPVHRLGRGTSGILLCAKTKLAR 165

Query: 370 SRLAAYFADGTSVVEDKY-TNSECNTMRKICKIYRALVSGVMDVDEVVIKQSIGRIKYPG 194
           +RLA+YFADGTS +  K  TN E     KI KIYR L SG+++ DEV I Q IG +KYPG
Sbjct: 166 ARLASYFADGTSHIGGKRDTNGEIG---KIAKIYRGLASGIVENDEVTINQPIGVVKYPG 222

Query: 193 VAKGLYVASPSGKPALSSVRALERDLENSCTLVQVEIQSGRPHQIRIHLSFIGLPLIGDP 14
           VAKGLYVAS SGKPALS V  LER+++ + TLVQV+IQSGRPHQIRIHLSFIG PL+GDP
Sbjct: 223 VAKGLYVASQSGKPALSVVGILERNVQENSTLVQVKIQSGRPHQIRIHLSFIGHPLLGDP 282

Query: 13  LY 8
           LY
Sbjct: 283 LY 284