BLASTX nr result
ID: Atropa21_contig00033729
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Atropa21_contig00033729
(505 letters)
Database: nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006345040.1| PREDICTED: RNA-dependent RNA polymerase 2-li... 282 4e-74
gb|AAU21243.1| putative RNA-dependent RNA polymerase RdRP2 [Nico... 282 4e-74
ref|XP_004236120.1| PREDICTED: RNA-dependent RNA polymerase 2-li... 276 2e-72
ref|XP_002280099.1| PREDICTED: RNA-dependent RNA polymerase 2 [V... 209 4e-52
gb|EMJ12511.1| hypothetical protein PRUPE_ppa000513mg [Prunus pe... 197 1e-48
gb|EOY20662.1| RNA-dependent RNA polymerase 2 isoform 1 [Theobro... 193 2e-47
ref|NP_001267608.1| RNA-dependent RNA polymerase 2-like [Cucumis... 189 4e-46
gb|EPS65825.1| hypothetical protein M569_08951, partial [Genlise... 187 1e-45
ref|XP_004508850.1| PREDICTED: RNA-dependent RNA polymerase 2-li... 187 1e-45
ref|XP_004298927.1| PREDICTED: RNA-dependent RNA polymerase 2-li... 187 1e-45
gb|ADU04145.1| hypothetical protein [Gossypium hirsutum] 185 6e-45
ref|XP_003608944.1| Rna-dependent RNA polymerase [Medicago trunc... 184 8e-45
gb|ADU04140.1| hypothetical protein [Gossypium hirsutum] 179 3e-43
gb|EXC16034.1| RNA-dependent RNA polymerase 2 [Morus notabilis] 174 1e-41
ref|XP_002321582.1| hypothetical protein POPTR_0015s08500g [Popu... 172 3e-41
ref|XP_006476748.1| PREDICTED: RNA-dependent RNA polymerase 2-li... 167 1e-39
gb|ESW27397.1| hypothetical protein PHAVU_003G198500g [Phaseolus... 164 1e-38
ref|XP_002872551.1| RNA-dependent RNA polymerase 2 [Arabidopsis ... 162 3e-38
ref|XP_006579560.1| PREDICTED: RNA-dependent RNA polymerase 2-li... 162 4e-38
ref|XP_003550744.1| PREDICTED: RNA-dependent RNA polymerase 2-li... 161 1e-37
>ref|XP_006345040.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Solanum tuberosum]
Length = 1119
Score = 282 bits (721), Expect = 4e-74
Identities = 135/168 (80%), Positives = 151/168 (89%)
Frame = -2
Query: 504 KSRGHGRVQFETLQAKSQSLSLSEQGKLVFKGNQLSLVSSFDDIIARPVEPKNRFKNGFL 325
KSRGHGRVQFETLQ K LSLSEQG L+FKG+QLSLVSSFDDIIARPVEPK RF++G L
Sbjct: 51 KSRGHGRVQFETLQDKLHCLSLSEQGNLLFKGHQLSLVSSFDDIIARPVEPKCRFQDGIL 110
Query: 324 HIGVLVKKDFMEVLETWENVKTWVMPERKSIEFWVSHAGECYRLEVQFGDIAETSQCSLE 145
H G+LVK D M+VLETWE+VKT +MPERK +EFWVSHA ECYRLEVQFGD+ E + CSLE
Sbjct: 111 HTGLLVKNDVMQVLETWEDVKTLIMPERKCLEFWVSHAEECYRLEVQFGDVVEATVCSLE 170
Query: 144 DEQPALILKLKHAPKLYQRVSGPAVASKFTADRYHICKEDCEFLWVRT 1
+++ AL+LKLKHAPKLYQRVSGPAVASKF+ADRYHICKEDCEFLWVRT
Sbjct: 171 NQKSALLLKLKHAPKLYQRVSGPAVASKFSADRYHICKEDCEFLWVRT 218
>gb|AAU21243.1| putative RNA-dependent RNA polymerase RdRP2 [Nicotiana benthamiana]
Length = 1120
Score = 282 bits (721), Expect = 4e-74
Identities = 135/169 (79%), Positives = 152/169 (89%), Gaps = 1/169 (0%)
Frame = -2
Query: 504 KSRGHGRVQFETLQAKSQSLSLSEQGKLVFKGNQLSLVSSFDDIIARPVEPKNRFKNGFL 325
KSRGHGRVQFET Q+K QSLSLSEQGKLVFKG+QL L SSFDDIIARP+E RF+ G L
Sbjct: 51 KSRGHGRVQFETSQSKLQSLSLSEQGKLVFKGHQLILTSSFDDIIARPIELNYRFQKGIL 110
Query: 324 HIGVLVKKDFMEVLETWENVKTWVMPERKSIEFWVSHA-GECYRLEVQFGDIAETSQCSL 148
H G+L++ D+MEVLETWENVKT +MPERKS+EFWVSHA GECYRLEVQFGDI ET +CSL
Sbjct: 111 HTGILLENDYMEVLETWENVKTLIMPERKSLEFWVSHAKGECYRLEVQFGDIIETCECSL 170
Query: 147 EDEQPALILKLKHAPKLYQRVSGPAVASKFTADRYHICKEDCEFLWVRT 1
EDE+ AL+LKLKHAPKLYQRVSGP VASKF++DRYH+C+EDCEFLWVRT
Sbjct: 171 EDEKTALLLKLKHAPKLYQRVSGPGVASKFSSDRYHVCEEDCEFLWVRT 219
>ref|XP_004236120.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Solanum
lycopersicum]
Length = 1119
Score = 276 bits (706), Expect = 2e-72
Identities = 131/168 (77%), Positives = 150/168 (89%)
Frame = -2
Query: 504 KSRGHGRVQFETLQAKSQSLSLSEQGKLVFKGNQLSLVSSFDDIIARPVEPKNRFKNGFL 325
KSRGHGRVQFETLQ K LSL+EQG L+FKG+QLSLVSSFDDII RPVEPK RF+ G L
Sbjct: 51 KSRGHGRVQFETLQDKLHCLSLAEQGNLLFKGHQLSLVSSFDDIITRPVEPKCRFQAGIL 110
Query: 324 HIGVLVKKDFMEVLETWENVKTWVMPERKSIEFWVSHAGECYRLEVQFGDIAETSQCSLE 145
H G+LV+KD M+VLETWE+VKT +MPERK +EFWVSHA ECYRLEVQFGD+ E + CS+E
Sbjct: 111 HTGLLVEKDVMQVLETWEDVKTLIMPERKCLEFWVSHAEECYRLEVQFGDVTEGTLCSVE 170
Query: 144 DEQPALILKLKHAPKLYQRVSGPAVASKFTADRYHICKEDCEFLWVRT 1
+++ AL+LKLKHAPKLYQRVSGPAVASKF+ADRYHICKEDCEFLW+RT
Sbjct: 171 NQKSALLLKLKHAPKLYQRVSGPAVASKFSADRYHICKEDCEFLWIRT 218
>ref|XP_002280099.1| PREDICTED: RNA-dependent RNA polymerase 2 [Vitis vinifera]
gi|297733815|emb|CBI15062.3| unnamed protein product
[Vitis vinifera]
Length = 1127
Score = 209 bits (531), Expect = 4e-52
Identities = 104/169 (61%), Positives = 130/169 (76%), Gaps = 1/169 (0%)
Frame = -2
Query: 504 KSRGHGRVQFETLQAKSQSLSLSEQGKLVFKGNQLSLVSSFDDIIARPVEPKNRFKNGFL 325
KSRG GRVQFETLQAK + LS QG LVF+G+ LS+ ++FDDII RPVEP+N+ +G L
Sbjct: 49 KSRGFGRVQFETLQAKRAADLLSLQGDLVFRGSSLSISATFDDIIVRPVEPRNQVDSGVL 108
Query: 324 HIGVLVKKDFMEVLETWENVKTWVMPERKSIEFWVSHAGECYRLEVQFGDIAETSQCSL- 148
H+G LV+ D M VLE+WE VKT VMPER +EFWV GE Y+LEV F D+ E+S C L
Sbjct: 109 HVGFLVEDDCMLVLESWEGVKTLVMPERNRVEFWVDKDGERYKLEVPFDDVLESSACCLG 168
Query: 147 EDEQPALILKLKHAPKLYQRVSGPAVASKFTADRYHICKEDCEFLWVRT 1
+ AL+LKLK+APK++Q+ +GP +ASKF+ADRYHI KED EFLW+RT
Sbjct: 169 GGKVNALLLKLKYAPKIFQKFAGPNIASKFSADRYHISKEDAEFLWLRT 217
>gb|EMJ12511.1| hypothetical protein PRUPE_ppa000513mg [Prunus persica]
Length = 1118
Score = 197 bits (501), Expect = 1e-48
Identities = 94/169 (55%), Positives = 123/169 (72%), Gaps = 1/169 (0%)
Frame = -2
Query: 504 KSRGHGRVQFETLQAKSQSLSLSEQGKLVFKGNQLSLVSSFDDIIARPVEPKNRFKNGFL 325
KSRG GRVQF TL+AKS++ SLS Q LVFK L L ++DDII RPV+PK R L
Sbjct: 49 KSRGFGRVQFTTLEAKSEAYSLSLQNGLVFKSESLRLSETYDDIIQRPVDPKRRLNGTVL 108
Query: 324 HIGVLVKKDFMEVLETWENVKTWVMPERKSIEFWVSHAGECYRLEVQFGDIAETSQCSLE 145
H G +VK D M +LE+WE V+ WVMPERK +EFWV ECY+LE+ F +I E+ C L
Sbjct: 109 HAGFMVKGDCMSMLESWEGVRAWVMPERKRVEFWVWLRDECYKLEIAFENIMESFGCRLG 168
Query: 144 DEQ-PALILKLKHAPKLYQRVSGPAVASKFTADRYHICKEDCEFLWVRT 1
E+ AL+LKLK P++++++SGP VA++F+ DRYH+CK+D +FLWVRT
Sbjct: 169 GEKVNALLLKLKFGPRIFRKISGPNVAARFSTDRYHVCKDDFDFLWVRT 217
>gb|EOY20662.1| RNA-dependent RNA polymerase 2 isoform 1 [Theobroma cacao]
gi|508773407|gb|EOY20663.1| RNA-dependent RNA polymerase
2 isoform 1 [Theobroma cacao]
Length = 1149
Score = 193 bits (491), Expect = 2e-47
Identities = 90/169 (53%), Positives = 123/169 (72%), Gaps = 1/169 (0%)
Frame = -2
Query: 504 KSRGHGRVQFETLQAKSQSLSLSEQGKLVFKGNQLSLVSSFDDIIARPVEPKNRFKNGFL 325
KSRG GRVQF TL+AKS++ LS + LVFK + L L ++DDII RP+ +R G L
Sbjct: 56 KSRGFGRVQFATLEAKSKAHLLSLRNDLVFKSHSLKLSETYDDIIPRPIRADHRLDGGVL 115
Query: 324 HIGVLVKKDFMEVLETWENVKTWVMPERKSIEFWVSHAGECYRLEVQFGDIAETSQCSLE 145
H+G +V+ D++ VLE WE+V+ W+MPER+ +EFW+ + GECY+LEV F D+ ET C
Sbjct: 116 HVGFMVQDDYLRVLERWEDVRGWLMPERRRLEFWLWNNGECYKLEVLFDDVLETVGCCFN 175
Query: 144 DEQ-PALILKLKHAPKLYQRVSGPAVASKFTADRYHICKEDCEFLWVRT 1
AL+L++K+AP++YQ+VSGP +ASK DRYHICKE+ +FLWVRT
Sbjct: 176 GSSCNALLLRVKYAPRIYQKVSGPNIASKLRPDRYHICKENFDFLWVRT 224
>ref|NP_001267608.1| RNA-dependent RNA polymerase 2-like [Cucumis sativus]
gi|316989905|gb|ADU77018.1| RNA-dependent RNA polymerase
2 [Cucumis sativus]
Length = 1117
Score = 189 bits (479), Expect = 4e-46
Identities = 89/169 (52%), Positives = 124/169 (73%), Gaps = 1/169 (0%)
Frame = -2
Query: 504 KSRGHGRVQFETLQAKSQSLSLSEQGKLVFKGNQLSLVSSFDDIIARPVEPKNRFKNGFL 325
KSRG GRVQF TL+AK++++SLS Q LVF L DDI+ RPV NR +NG L
Sbjct: 49 KSRGSGRVQFTTLEAKAKAMSLSVQNSLVFGTQNLRFSLINDDIVVRPVHATNRTENGVL 108
Query: 324 HIGVLVKKDFMEVLETWENVKTWVMPERKSIEFWVSHAGECYRLEVQFGDIAETS-QCSL 148
H+G ++K++ M VLE+WE VK W+MPER+ IEFW+ H ECY+LEV F +I ET+ C
Sbjct: 109 HVGFMLKEERMSVLESWEGVKAWIMPERRRIEFWIWHEQECYKLEVMFEEILETTGHCLG 168
Query: 147 EDEQPALILKLKHAPKLYQRVSGPAVASKFTADRYHICKEDCEFLWVRT 1
E++ AL+LKLK+AP++Y+++SG +AS+F++ RY +C ED ++LWVRT
Sbjct: 169 EEKLNALLLKLKYAPRIYKKISGSNMASRFSSTRYRLCIEDYDYLWVRT 217
>gb|EPS65825.1| hypothetical protein M569_08951, partial [Genlisea aurea]
Length = 1094
Score = 187 bits (475), Expect = 1e-45
Identities = 90/174 (51%), Positives = 128/174 (73%), Gaps = 6/174 (3%)
Frame = -2
Query: 504 KSRGHGRVQFETLQAKSQSLSLSEQGKLVFKGNQLSLVSSFDDIIARPVEPKNRFKNG-- 331
KSRGHGRVQF++ + K+++LSLSE+ KLVFKG+ L + SF+DII RPV+P+NR +N
Sbjct: 20 KSRGHGRVQFDSPKFKAEALSLSEERKLVFKGHYLCVSHSFEDIITRPVDPENRLENAAG 79
Query: 330 -FLHIGVLVKKDFMEVLETWENVKTWVMPERKSIEFWVSHAGECYRLEVQFGDIAETSQC 154
L G+++K D M +LE+W K WV+PERK + ++ + E Y+LE+Q+GDI ET C
Sbjct: 80 LCLLAGIMLKGDCMGILESWNGCKLWVLPERKKLLLFLDNEEESYKLEIQYGDICETHLC 139
Query: 153 SLE---DEQPALILKLKHAPKLYQRVSGPAVASKFTADRYHICKEDCEFLWVRT 1
DE A++LKLKHAPK+++++SGP V SKF +DRY+IC +D +F+WVRT
Sbjct: 140 CSNGDGDEINAILLKLKHAPKVFRKISGPDVTSKFASDRYNICIQDMDFIWVRT 193
>ref|XP_004508850.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Cicer arietinum]
Length = 1122
Score = 187 bits (475), Expect = 1e-45
Identities = 90/169 (53%), Positives = 119/169 (70%), Gaps = 1/169 (0%)
Frame = -2
Query: 504 KSRGHGRVQFETLQAKSQSLSLSEQGKLVFKGNQLSLVSSFDDIIARPVEPKNRFKNGFL 325
KSRG GRVQFET +AKS++LSLS KL+F + L L +S DDI+ RP P NR NG L
Sbjct: 51 KSRGSGRVQFETFEAKSKALSLSSNDKLLFNSHFLRLAASSDDIVPRPPLPCNRLHNGTL 110
Query: 324 HIGVLVKKDFMEVLETWENVKTWVMPERKSIEFWVSHAGECYRLEVQFGDIAETSQCSLE 145
H G + D M V+++WE VK WVMPER ++FWV+H +C++LE+ F +I E S +
Sbjct: 111 HAGFPLGPDRMSVIQSWEGVKGWVMPERNRLDFWVTHHDQCFKLEIPFENILECDGFSSD 170
Query: 144 DEQP-ALILKLKHAPKLYQRVSGPAVASKFTADRYHICKEDCEFLWVRT 1
+P AL+LKLK+ P++YQR+ GP V++KF ADRY CKED F+WVRT
Sbjct: 171 GSKPNALLLKLKYGPRIYQRMEGPNVSAKFKADRYRFCKEDFAFMWVRT 219
>ref|XP_004298927.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Fragaria vesca
subsp. vesca]
Length = 1136
Score = 187 bits (475), Expect = 1e-45
Identities = 87/168 (51%), Positives = 121/168 (72%), Gaps = 1/168 (0%)
Frame = -2
Query: 504 KSRGHGRVQFETLQAKSQSLSLSEQGKLVFKGNQLSLVSSFDDIIARPVEPKNRFKNGFL 325
KSRG+GR+QF L+ K+++ SLS L FK + L L + DDII RP++P++R + L
Sbjct: 52 KSRGYGRIQFTALRHKARAQSLSSSADLFFKSHNLRLFEAHDDIIPRPLDPRHRLNSTVL 111
Query: 324 HIGVLVKKDFMEVLETWENVKTWVMPERKSIEFWVSHAGECYRLEVQFGDIAETSQCSL- 148
H G +V + M VLE+WE V+ WVMPERK +EFWV G+CY++E+ F +I E+ C L
Sbjct: 112 HAGFVVNDETMSVLESWEGVRAWVMPERKRVEFWVWRVGDCYKMEIAFENIVESVGCCLG 171
Query: 147 EDEQPALILKLKHAPKLYQRVSGPAVASKFTADRYHICKEDCEFLWVR 4
D+ AL LKLK PK+++++SGP VASKF+ADRYH+CKED ++LWVR
Sbjct: 172 GDKVNALRLKLKFGPKIFRQLSGPNVASKFSADRYHVCKEDFDYLWVR 219
>gb|ADU04145.1| hypothetical protein [Gossypium hirsutum]
Length = 1147
Score = 185 bits (469), Expect = 6e-45
Identities = 89/169 (52%), Positives = 115/169 (68%), Gaps = 1/169 (0%)
Frame = -2
Query: 504 KSRGHGRVQFETLQAKSQSLSLSEQGKLVFKGNQLSLVSSFDDIIARPVEPKNRFKNGFL 325
KSRG GRVQF QAKS +L LS L+FK + L L ++DDII RP+ +R G L
Sbjct: 51 KSRGFGRVQFAAPQAKSDALRLSRHDHLLFKSHSLKLSRTYDDIIPRPIRADHRLDGGVL 110
Query: 324 HIGVLVKKDFMEVLETWENVKTWVMPERKSIEFWVSHAGECYRLEVQFGDIAETSQCSLE 145
H G + D + VLE WE V+ W+MPER+ +EFWV GECY+L+ F DI ET C +
Sbjct: 111 HAGFMSSDDCLRVLERWEGVRGWIMPERRRLEFWVWTDGECYKLDFLFDDIFETVGCCFD 170
Query: 144 DEQ-PALILKLKHAPKLYQRVSGPAVASKFTADRYHICKEDCEFLWVRT 1
AL+L++++AP++YQ+VSGP VASKF+ DRYHICKE +FLWVRT
Sbjct: 171 GSACNALLLRVRYAPRIYQKVSGPNVASKFSTDRYHICKEKFDFLWVRT 219
>ref|XP_003608944.1| Rna-dependent RNA polymerase [Medicago truncatula]
gi|355509999|gb|AES91141.1| Rna-dependent RNA polymerase
[Medicago truncatula]
Length = 1308
Score = 184 bits (468), Expect = 8e-45
Identities = 89/170 (52%), Positives = 124/170 (72%), Gaps = 2/170 (1%)
Frame = -2
Query: 504 KSRGHGRVQFETLQAKSQSLSLSEQGKLVFKGNQLSLVSSFDDIIARPVEPKNRFKNGFL 325
KSRG GRVQFETL+AKS++L+L+E KL+ + L L +S DDII RP P+NR NG L
Sbjct: 51 KSRGVGRVQFETLEAKSKALTLAENKKLLLSSHFLCLDASSDDIIPRPALPRNRINNGAL 110
Query: 324 HIGVLVKKDFMEVLETWENVKTWVMPERKSIEFWVSHAGECYRLEVQFGDIAE-TSQCSL 148
+ G + D M VL++WE V+ WVMPER+ ++FWV+H +C++LE+ F +I E CS
Sbjct: 111 YAGFPIGPDCMSVLQSWEGVRGWVMPERQRLDFWVTHGDQCFKLEIPFENILECDGYCSD 170
Query: 147 EDEQP-ALILKLKHAPKLYQRVSGPAVASKFTADRYHICKEDCEFLWVRT 1
E +P AL+LKL++ P++YQ+++GP VA+KF DRY CKE+ EF+WVRT
Sbjct: 171 EGSKPNALLLKLRYGPRIYQKMAGPNVAAKFKDDRYRFCKENFEFMWVRT 220
>gb|ADU04140.1| hypothetical protein [Gossypium hirsutum]
Length = 1147
Score = 179 bits (454), Expect = 3e-43
Identities = 86/169 (50%), Positives = 113/169 (66%), Gaps = 1/169 (0%)
Frame = -2
Query: 504 KSRGHGRVQFETLQAKSQSLSLSEQGKLVFKGNQLSLVSSFDDIIARPVEPKNRFKNGFL 325
KSRG GRVQF QA S +L LS L+FK + L L ++DDII RP+ +R G L
Sbjct: 51 KSRGFGRVQFAAPQAMSDALRLSRHDHLLFKSHSLKLSRTYDDIIPRPIRADHRLDGGVL 110
Query: 324 HIGVLVKKDFMEVLETWENVKTWVMPERKSIEFWVSHAGECYRLEVQFGDIAETSQCSLE 145
H G + D + VLE WE V+ W+MPER+ +EFWV GECY+L+ F D+ ET C +
Sbjct: 111 HAGFMSSDDCLRVLERWEGVRGWIMPERRRLEFWVWTDGECYKLDFLFDDLFETVGCCFD 170
Query: 144 DEQ-PALILKLKHAPKLYQRVSGPAVASKFTADRYHICKEDCEFLWVRT 1
AL+L++++AP+ Y++VSGP VASKF+ DRYHICKE +FLWVRT
Sbjct: 171 GSACNALLLRVRYAPRTYRKVSGPNVASKFSTDRYHICKEKFDFLWVRT 219
>gb|EXC16034.1| RNA-dependent RNA polymerase 2 [Morus notabilis]
Length = 1115
Score = 174 bits (440), Expect = 1e-41
Identities = 86/169 (50%), Positives = 114/169 (67%), Gaps = 1/169 (0%)
Frame = -2
Query: 504 KSRGHGRVQFETLQAKSQSLSLSEQGKLVFKGNQLSLVSSFDDIIARPVEPKNRFKNGFL 325
KSRG GRVQF +L AK + +LS VF+ L + + DDI+A PV+PK R ++G L
Sbjct: 50 KSRGFGRVQFTSLAAKLVAQALSLSNNFVFRSRNLGIFDTHDDIVALPVDPKLRLEDGVL 109
Query: 324 HIGVLVKKDFMEVLETWENVKTWVMPERKSIEFWVSHAGECYRLEVQFGDIAETSQCSLE 145
H G +++ D M VL++WE V+ W MPER +EFWV +CY+LEV F D+ ET L+
Sbjct: 110 HAGFMIRDDRMAVLQSWEGVRAWAMPERNRVEFWVWSDEDCYKLEVAFEDVLETVGYCLD 169
Query: 144 D-EQPALILKLKHAPKLYQRVSGPAVASKFTADRYHICKEDCEFLWVRT 1
D + A +L+LK+ PK+Y+R+S P SKF ADRYHICKED EF WVRT
Sbjct: 170 DGKLYAFLLQLKYGPKIYKRISRP---SKFVADRYHICKEDFEFHWVRT 215
>ref|XP_002321582.1| hypothetical protein POPTR_0015s08500g [Populus trichocarpa]
gi|222868578|gb|EEF05709.1| hypothetical protein
POPTR_0015s08500g [Populus trichocarpa]
Length = 1110
Score = 172 bits (437), Expect = 3e-41
Identities = 85/169 (50%), Positives = 119/169 (70%), Gaps = 2/169 (1%)
Frame = -2
Query: 501 SRGHGRVQFETLQAKSQSLSLSEQGKLVFKGNQLSLVSSFDDIIARPVEPKNRFKNGFLH 322
SRG GRVQF +L+ K ++LSLS + KLV K L L ++DDII RPV+ +NR +NG L+
Sbjct: 51 SRGFGRVQFSSLEVKHEALSLSLKNKLVLKSQNLKLSETYDDIIPRPVKDQNRMENGVLY 110
Query: 321 IGVLVKKDFMEVLETWENVKTWVMPERKSIEFWVSHAGEC-YRLEVQFGDIAETSQCSLE 145
+G + K+ + VLE WE V+ W MPER+ IEFW+ E Y+L V+F DI E L+
Sbjct: 111 VGFMKKETTLCVLEYWEGVRGWFMPERRRIEFWIRVGQEFRYKLVVEFEDILEAVGYPLD 170
Query: 144 -DEQPALILKLKHAPKLYQRVSGPAVASKFTADRYHICKEDCEFLWVRT 1
D+ A++LKL++ P++YQ++SGP +ASKF+ +RY CKED +FLWVRT
Sbjct: 171 GDKVNAVVLKLRYGPRIYQKISGPGIASKFSTNRYFYCKEDFDFLWVRT 219
>ref|XP_006476748.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Citrus sinensis]
Length = 1131
Score = 167 bits (424), Expect = 1e-39
Identities = 84/187 (44%), Positives = 123/187 (65%), Gaps = 19/187 (10%)
Frame = -2
Query: 504 KSRGHGRVQFETLQAKSQSLSLSEQGKLVFKGNQLSLVSSFDDIIARPVEPKNRFKNGFL 325
KSRG GRVQF +L KS++ +LS KLVF L + + DI+ RPV+ ++R ++G L
Sbjct: 46 KSRGIGRVQFTSLDFKSKAQNLSLNDKLVFNSQNLKISETHSDIVPRPVKAQHRVEDGVL 105
Query: 324 HIGVLVKKDFMEVLETWENVKTWVMPERKSIEFWV--SHAGE---------------CYR 196
H+GV+ K++ + VL+T+E V+ W++P+R+ +EFWV H GE C++
Sbjct: 106 HVGVMCKEERLRVLQTFEGVRGWLLPDRRRLEFWVWPKHNGEWQKGIQECQSDSSDCCFK 165
Query: 195 LEVQFGDIAETSQCSLEDEQP--ALILKLKHAPKLYQRVSGPAVASKFTADRYHICKEDC 22
+E+ F D+ ET SL++ ++ KLK+ PK+YQ+VSGP VASKF +DRYHICKED
Sbjct: 166 VEILFEDVLETVGFSLDEGATVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHICKEDF 225
Query: 21 EFLWVRT 1
+F WVRT
Sbjct: 226 DFFWVRT 232
>gb|ESW27397.1| hypothetical protein PHAVU_003G198500g [Phaseolus vulgaris]
Length = 1119
Score = 164 bits (414), Expect = 1e-38
Identities = 86/170 (50%), Positives = 117/170 (68%), Gaps = 2/170 (1%)
Frame = -2
Query: 504 KSRGHGRVQFETLQAKSQSLSLSEQGKLVFKGNQLSLVSSFDDIIARPVEPKNRFKNGFL 325
KSRG GRVQFE L AKS++LSLS+ +L+ + L L + +DII RP+ +R +NG L
Sbjct: 52 KSRGAGRVQFEALDAKSRALSLSQLQQLLIHSHFLRLSDTSEDIIFRPL---HRLQNGVL 108
Query: 324 HIGVLVKKDFMEVLETWENVKTWVMPERKSIEFWVSHAGECYRLEVQFGDIAETSQCSL- 148
+ G+++ D M VLE+WE V V+P+R+ ++F V H G+CYR+E+ F DI E+ L
Sbjct: 109 YAGLMLSDDRMSVLESWEGVAGLVVPQRRKLDFLVLHDGDCYRVEIFFEDILESHGYCLG 168
Query: 147 -EDEQPALILKLKHAPKLYQRVSGPAVASKFTADRYHICKEDCEFLWVRT 1
E + AL+LKLK PK+Y++ GP VA+KF DRYH CKED EFLWVRT
Sbjct: 169 AEGKLNALLLKLKFGPKIYKKKMGPDVATKFRNDRYHFCKEDSEFLWVRT 218
>ref|XP_002872551.1| RNA-dependent RNA polymerase 2 [Arabidopsis lyrata subsp. lyrata]
gi|297318388|gb|EFH48810.1| RNA-dependent RNA polymerase
2 [Arabidopsis lyrata subsp. lyrata]
Length = 1134
Score = 162 bits (411), Expect = 3e-38
Identities = 81/173 (46%), Positives = 115/173 (66%), Gaps = 5/173 (2%)
Frame = -2
Query: 504 KSRGHGRVQFETLQAKSQSLSLSEQGKLVFKGNQLSLVSSFDDIIARPVEPKNRFKNGFL 325
K R RVQF TL+ KS++ LS Q KL+FK + L L ++DDII RPV+P+ R + L
Sbjct: 52 KPRDFARVQFTTLEVKSRAQLLSSQSKLLFKTHNLRLSEAYDDIIPRPVDPRRRLDDIVL 111
Query: 324 HIGVLV--KKDFMEVLETWENVKTWVMPERKSIEFWVSHAGECYRLEVQFGDIAETSQCS 151
+G +K F LE W+ V+ W++ E++ +EFWV GECY++EV+F DI ET C
Sbjct: 112 TVGFPESDEKRFC-ALEKWDGVRCWILEEKRRLEFWVWENGECYKIEVRFEDIVETLCCC 170
Query: 150 LE---DEQPALILKLKHAPKLYQRVSGPAVASKFTADRYHICKEDCEFLWVRT 1
+ E A +LKLK+ PK+++RVSGP +A+KF +DRY CKED +F+W+RT
Sbjct: 171 VNGDASETNAFLLKLKYGPKVFKRVSGPHIATKFKSDRYQFCKEDFDFMWIRT 223
>ref|XP_006579560.1| PREDICTED: RNA-dependent RNA polymerase 2-like isoform X1 [Glycine
max]
Length = 1121
Score = 162 bits (410), Expect = 4e-38
Identities = 87/170 (51%), Positives = 114/170 (67%), Gaps = 2/170 (1%)
Frame = -2
Query: 504 KSRGHGRVQFETLQAKSQSLSLSEQGKLVFKGNQLSLVSSFDDIIARPVEPKNRFKNGFL 325
KSRG GRVQFETL A+S++LSLS+ L+F + L L + DII RP ++R NG L
Sbjct: 53 KSRGFGRVQFETLDARSRALSLSQLNHLLFHRHFLRLSETDADIIFRP---QHRLHNGVL 109
Query: 324 HIGVLVKKDFMEVLETWENVKTWVMPERKSIEFWVSHAGECYRLEVQFGDIAET-SQCSL 148
+ G ++ M VLE+WE V WV+P RK ++FWV H G+CYRLE F DI E+ C
Sbjct: 110 YAGFVLSDHRMSVLESWEGVAGWVLPLRKRLDFWVWHNGDCYRLEFLFEDILESHGYCLG 169
Query: 147 EDEQ-PALILKLKHAPKLYQRVSGPAVASKFTADRYHICKEDCEFLWVRT 1
ED + AL+LK+K P++Y++ +G VA+KF DRY CKED EFLWVRT
Sbjct: 170 EDAKLNALLLKMKFGPRIYKKKTGADVAAKFRGDRYRFCKEDFEFLWVRT 219
>ref|XP_003550744.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Glycine max]
Length = 1120
Score = 161 bits (407), Expect = 1e-37
Identities = 84/170 (49%), Positives = 115/170 (67%), Gaps = 2/170 (1%)
Frame = -2
Query: 504 KSRGHGRVQFETLQAKSQSLSLSEQGKLVFKGNQLSLVSSFDDIIARPVEPKNRFKNGFL 325
KSRG GRVQFETL A+S++LSLS+ +L+F + L L + DII RP ++R +NG L
Sbjct: 52 KSRGFGRVQFETLDARSRALSLSQLNQLLFNRHFLRLSETDSDIIFRP---QHRLQNGVL 108
Query: 324 HIGVLVKKDFMEVLETWENVKTWVMPERKSIEFWVSHAGECYRLEVQFGDIAET-SQCSL 148
+ G ++ M VLE+WE + WV+P+RK ++FWV H G+CYRLE F DI E+ C
Sbjct: 109 YAGFMLSDHRMSVLESWEGIAGWVLPQRKRLDFWVWHNGDCYRLEFLFEDILESHGYCLG 168
Query: 147 EDEQ-PALILKLKHAPKLYQRVSGPAVASKFTADRYHICKEDCEFLWVRT 1
ED + AL+LK+K P++Y++ +G VA+ F DRY KED EFLWVRT
Sbjct: 169 EDARLNALLLKMKFGPRIYKKKTGTDVAANFRGDRYRFLKEDFEFLWVRT 218