BLASTX nr result
ID: Atropa21_contig00033527
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Atropa21_contig00033527
(1046 letters)
Database: nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga... 270 2e-73
emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulga... 257 2e-69
gb|ABD33261.1| RNA-directed DNA polymerase (Reverse transcriptas... 243 1e-61
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ... 206 2e-55
ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298... 210 1e-54
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip... 202 6e-52
gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana] 197 3e-51
dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ... 207 6e-51
dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana] 207 6e-51
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta... 199 8e-51
gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana] 205 3e-50
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc... 201 5e-50
emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-li... 202 1e-49
emb|CAB72467.1| putative protein [Arabidopsis thaliana] 191 3e-49
dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like ... 201 5e-49
ref|XP_004253224.1| PREDICTED: uncharacterized protein LOC101268... 184 6e-49
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta... 191 8e-48
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,... 194 4e-47
gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thali... 177 4e-47
gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana] 192 2e-46
>emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1114
Score = 270 bits (691), Expect(2) = 2e-73
Identities = 138/317 (43%), Positives = 203/317 (64%), Gaps = 4/317 (1%)
Frame = +1
Query: 7 EVVAPIKDIDDSKASGRDGYNALFYKKTWGTIGEEVILAVLDFFNGNSMYKPGNCTVVTL 186
E+ + DIDD+KA G DG+N++F+KK+W I +E+ +LDFF M+KP NCT VTL
Sbjct: 445 EIDQALADIDDTKAPGLDGFNSVFFKKSWLVIKQEIYEGILDFFENGFMHKPINCTAVTL 504
Query: 187 IPKVKHPASIKYYRPISCCNVLHKIISKIITKRLSGVMNALIDGSQSAFIPGRIVSDNII 366
IPK+ K YRPI+CC+ L+KIISKI+TKRL V+ ++D +Q+ FIP R + DNI+
Sbjct: 505 IPKIDEAKHAKDYRPIACCSTLYKIISKILTKRLQAVITEVVDCAQTGFIPERHIGDNIL 564
Query: 367 LSHELVKGILEKALQPDVC*NLIYRRHMIHLSGYFLN---K***ACSFLIQKIMGCITTV 537
L+ EL++G + + P + R+ + FL K S I+ IM C+ TV
Sbjct: 565 LATELIRGYNRRHVSPRCVIKVDIRKAYDSVEWVFLESMLKELGFPSMFIRWIMACVKTV 624
Query: 538 SYSITINGVGYAFFEEKRGLRQGDPMSPYLFVIAVEYLTRLLKQLHQDRRFQYHLKCEKL 717
SYSI +NG+ F+ ++GLRQGDP+SP+LF +++EYL+R + + +D F +H KCE++
Sbjct: 625 SYSILLNGIPSIPFDAQKGLRQGDPLSPFLFALSMEYLSRCMGNMCKDPEFNFHPKCERI 684
Query: 718 KIIQLSFADDLLLFSKGDVASVKLLMQYFTHFSQASRLHANLNKCSIYFGGVKQVVQDQI 897
K+ L FADDLL+F++ D +S+ +M F FS+AS L A++ K IYFGGV +Q+
Sbjct: 685 KLTHLMFADDLLMFARADASSISKIMAAFNSFSKASGLQASIEKSCIYFGGVCHEEAEQL 744
Query: 898 LE-CSMPKGEMHIRYSG 945
+ MP G + RY G
Sbjct: 745 ADRIQMPIGSLPFRYLG 761
Score = 33.9 bits (76), Expect(2) = 2e-73
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +3
Query: 948 LSTKLLSIVQCQLLLDKILGRVTSWTSKFLSYA 1046
L++K L+ QC+ L+DKI R W + LSYA
Sbjct: 764 LASKKLNFSQCKPLIDKITTRAQGWVAHLLSYA 796
>emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1110
Score = 257 bits (657), Expect(2) = 2e-69
Identities = 131/317 (41%), Positives = 199/317 (62%), Gaps = 4/317 (1%)
Frame = +1
Query: 7 EVVAPIKDIDDSKASGRDGYNALFYKKTWGTIGEEVILAVLDFFNGNSMYKPGNCTVVTL 186
E+ + I + KA G DG+NA F+KK+WG+I +E+ + +FFN + M++P NC VVTL
Sbjct: 442 EIDEALAGIGNDKAPGLDGFNAYFFKKSWGSIKQEIYAGIQEFFNNSRMHRPINCIVVTL 501
Query: 187 IPKVKHPASIKYYRPISCCNVLHKIISKIITKRLSGVMNALIDGSQSAFIPGRIVSDNII 366
+PKV+H +K +RPI+CC V++KIISK++T R+ G++ +++ +QS FIPGR ++DNI+
Sbjct: 502 LPKVQHATRVKEFRPIACCTVIYKIISKMLTNRMKGIIGEVVNEAQSGFIPGRHIADNIL 561
Query: 367 LSHELVKGILEKALQPDVC*NLIYRRHMIHLSGYFLNK***ACSF---LIQKIMGCITTV 537
L+ EL++G K + P + R+ + FL F + IM C++TV
Sbjct: 562 LASELIRGYTRKHMSPRCIMKVDIRKAYDSVEWSFLETLLYEFGFPSRFVGWIMECVSTV 621
Query: 538 SYSITINGVGYAFFEEKRGLRQGDPMSPYLFVIAVEYLTRLLKQLHQDRRFQYHLKCEKL 717
SYS+ +NG+ F+ ++GLRQGDPMSP+LF + +EYL+R L++L F +H KCE+L
Sbjct: 622 SYSVLVNGIPTQPFQARKGLRQGDPMSPFLFALCMEYLSRCLEELKGSPDFNFHPKCERL 681
Query: 718 KIIQLSFADDLLLFSKGDVASVKLLMQYFTHFSQASRLHANLNKCSIYFGGVKQVVQDQI 897
I L FADDLL+F + D +S+ + F FS AS L A+ K +IYF GV ++
Sbjct: 682 NITHLMFADDLLMFCRADKSSLDHMNVAFQKFSHASGLAASHEKSNIYFCGVDDETAREL 741
Query: 898 LE-CSMPKGEMHIRYSG 945
+ M GE+ RY G
Sbjct: 742 ADYVHMQLGELPFRYLG 758
Score = 33.1 bits (74), Expect(2) = 2e-69
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +3
Query: 948 LSTKLLSIVQCQLLLDKILGRVTSWTSKFLSYA 1046
L++K L+ QC+ L++ I R +W +K LSYA
Sbjct: 761 LTSKKLTYAQCKPLVEMITNRAQTWMAKLLSYA 793
>gb|ABD33261.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
truncatula]
Length = 402
Score = 243 bits (619), Expect = 1e-61
Identities = 128/276 (46%), Positives = 178/276 (64%), Gaps = 3/276 (1%)
Frame = +1
Query: 7 EVVAPIKDIDDSKASGRDGYNALFYKKTWGTIGEEVILAVLDFFNGNSMYKPGNCTVVTL 186
EV + +D SKA G DGYN F+K +W IG+ VI A+LDFF M K NCT +TL
Sbjct: 125 EVKNVLFSMDSSKAPGIDGYNVHFFKCSWNIIGDSVIDAILDFFKTGFMPKIINCTYMTL 184
Query: 187 IPKVKHPASIKYYRPISCCNVLHKIISKIITKRLSGVMNALIDGSQSAFIPGRIVSDNII 366
+PK + S+K +RPI+CC+V++KIISKI+T R+ GV+N+++ +QSAF+ GR++ DNII
Sbjct: 185 LPKEVNVTSVKNFRPIACCSVIYKIISKILTSRMQGVLNSVVSENQSAFVKGRVIFDNII 244
Query: 367 LSHELVKGILEKALQPDVC*NLIYRRHMIHLSGYFLNK***ACSF---LIQKIMGCITTV 537
LSHELVK K + P + ++ + F+ F + +MGC+TT
Sbjct: 245 LSHELVKSYSRKGISPRCMVKIDLQKAYNSVEWPFIKHLMLELGFSYKFVNWVMGCLTTA 304
Query: 538 SYSITINGVGYAFFEEKRGLRQGDPMSPYLFVIAVEYLTRLLKQLHQDRRFQYHLKCEKL 717
SY+ ING F K+GLRQGDP+SPYLFVI +EYL L QL ++ F++H +C++L
Sbjct: 305 SYTFNINGDLTRPFAAKKGLRQGDPISPYLFVICMEYLNICLIQLRKNAAFRFHPRCKRL 364
Query: 718 KIIQLSFADDLLLFSKGDVASVKLLMQYFTHFSQAS 825
+I + F DDLLLFS+GDV SV L + F+ FS AS
Sbjct: 365 NLIHVCFVDDLLLFSRGDVDSVSQLFEAFSLFSAAS 400
>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
thaliana]
Length = 1223
Score = 206 bits (523), Expect(2) = 2e-55
Identities = 114/305 (37%), Positives = 175/305 (57%), Gaps = 4/305 (1%)
Frame = +1
Query: 43 KASGRDGYNALFYKKTWGTIGEEVILAVLDFFNGNSMYKPGNCTVVTLIPKVKHPASIKY 222
K+ G DGY + F+K TW IG+E LAV FF + K N T++ LIPK +K
Sbjct: 469 KSPGPDGYTSEFFKATWEIIGDEFTLAVQSFFTKGFLPKGINSTILALIPKKTEAREMKD 528
Query: 223 YRPISCCNVLHKIISKIITKRLSGVMNALIDGSQSAFIPGRIVSDNIILSHELVKGILEK 402
YRPISCCNVL+K+ISKII RL V+ I G+QSAF+ R++ +N++L+ ELVK +
Sbjct: 529 YRPISCCNVLYKVISKIIANRLKLVLPKFIAGNQSAFVKDRLLIENLLLATELVKDYHKD 588
Query: 403 ALQPDVC*NLIYRRHMIHLSGYFLNK***ACSF---LIQKIMGCITTVSYSITINGVGYA 573
+ + + + FL F I I CITT S+S+ +NG
Sbjct: 589 TISTRCAIKIDISKAFDSVQWPFLINVFTILGFPREFIHWINICITTASFSVQVNGELAG 648
Query: 574 FFEEKRGLRQGDPMSPYLFVIAVEYLTRLLKQLHQDRRFQYHLKCEKLKIIQLSFADDLL 753
+F+ RGLRQG +SPYLFVI ++ L+++L + R F YH KC+ + + LSFADDL+
Sbjct: 649 YFQSSRGLRQGCALSPYLFVICMDVLSKMLDKAAAARHFGYHPKCKTMGLTHLSFADDLM 708
Query: 754 LFSKGDVASVKLLMQYFTHFSQASRLHANLNKCSIYFGGVKQVVQDQILE-CSMPKGEMH 930
+ S G + S++ +++ F F++ S L +L K ++Y G+ ++++ + G++
Sbjct: 709 VLSDGKIRSIERIIKVFDEFAKWSGLRISLEKSTVYLAGLSATARNEVADRFPFSSGQLP 768
Query: 931 IRYSG 945
+RY G
Sbjct: 769 VRYLG 773
Score = 38.5 bits (88), Expect(2) = 2e-55
Identities = 18/33 (54%), Positives = 23/33 (69%)
Frame = +3
Query: 948 LSTKLLSIVQCQLLLDKILGRVTSWTSKFLSYA 1046
L TK LS C LL+++ R+ SWTS+FLSYA
Sbjct: 776 LITKRLSTTDCLPLLEQVRKRIGSWTSRFLSYA 808
>ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298394 [Fragaria vesca
subsp. vesca]
Length = 958
Score = 210 bits (534), Expect(2) = 1e-54
Identities = 118/319 (36%), Positives = 188/319 (58%), Gaps = 6/319 (1%)
Frame = +1
Query: 7 EVVAPIKDIDDSKASGRDGYNALFYKKTWGTIGEEVILA-VLDFFNGNSMYKPGNCTVVT 183
++ A ++ +K+ G DG+N F++K W IG+ V+ A V +FF+ S+ N T++T
Sbjct: 277 DIRAVFFSMNPNKSPGPDGFNGCFFQKAWLVIGDNVVAAAVKEFFSYGSLLMELNSTIIT 336
Query: 184 LIPKVKHPASIKYYRPISCCNVLHKIISKIITKRLSGVMNALIDGSQSAFIPGRIVSDNI 363
L+PKV +P ++ +RPISCCN +KII+K++ RL G ++ ++ SQS FIPGR + DNI
Sbjct: 337 LVPKVANPTTMSDFRPISCCNTFYKIIAKLLANRLKGTLHLIVGPSQSTFIPGRRIGDNI 396
Query: 364 ILSHELVKGILEKALQPDVC*NLIYRRHMIHLSGYFLNK***AC---SFLIQKIMGCITT 534
+L+ E++ + QP + + + F+ A S LI I CI++
Sbjct: 397 LLAQEIICDYHKADGQPRCTFMVDMMKANDTVEWDFIIATLQAFNIPSTLIGWIKSCISS 456
Query: 535 VSYSITINGVGYAFFEEKRGLRQGDPMSPYLFVIAVEYLTRLL-KQLHQDRRFQYHLKCE 711
+S+ +NG FF +RGLRQGDP+SPYLFVIA+E L+ + ++++ F+YH +C+
Sbjct: 457 AKFSVCVNGELAGFFARRRGLRQGDPLSPYLFVIAMEVLSLCIQRRINCSPCFRYHWRCD 516
Query: 712 KLKIIQLSFADDLLLFSKGDVASVKLLMQYFTHFSQASRLHANLNKCSIYFGGVKQVVQD 891
+L + L FADDLL+F GD SV+ L F++F S L AN+++ I+ GV D
Sbjct: 517 QLNLSHLCFADDLLMFCNGDENSVRTLHDAFSNFESLSSLKANVSESKIFLAGVDGNSSD 576
Query: 892 QILE-CSMPKGEMHIRYSG 945
+L+ + G +RY G
Sbjct: 577 SVLQVTNFSLGTCPVRYLG 595
Score = 31.2 bits (69), Expect(2) = 1e-54
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +3
Query: 948 LSTKLLSIVQCQLLLDKILGRVTSWTSKFLSYA 1046
L T L + C LLD+I R+ SW +K LS+A
Sbjct: 598 LITSKLRMQDCSPLLDRIETRIKSWENKVLSFA 630
>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
72.31) [Arabidopsis thaliana]
Length = 928
Score = 202 bits (513), Expect(2) = 6e-52
Identities = 118/317 (37%), Positives = 180/317 (56%), Gaps = 4/317 (1%)
Frame = +1
Query: 7 EVVAPIKDIDDSKASGRDGYNALFYKKTWGTIGEEVILAVLDFFNGNSMYKPGNCTVVTL 186
E+ + + + K+ G DGY A FYK W IG E ILA+ FF + K N T++ L
Sbjct: 345 EIHKVVFSMPNDKSPGPDGYTAEFYKGAWNIIGAEFILAIQSFFAKGFLPKGINSTILAL 404
Query: 187 IPKVKHPASIKYYRPISCCNVLHKIISKIITKRLSGVMNALIDGSQSAFIPGRIVSDNII 366
IPK K +K YRPISCCNVL+K+ISKII RL V+ I G+QSAF+ R++ +N++
Sbjct: 405 IPKKKEAKEMKDYRPISCCNVLYKVISKIIANRLKLVLPKFIVGNQSAFVKDRLLIENVL 464
Query: 367 LSHELVKGILEKALQPDVC*NLIYRRHMIHLSGYFLNK***ACSF---LIQKIMGCITTV 537
L+ E+VK + ++ + + + FL A +F I CITT
Sbjct: 465 LATEIVKDYHKDSVSSRCALKIDISKAFDSVQWKFLINVLEAMNFPPEFTHWITLCITTA 524
Query: 538 SYSITINGVGYAFFEEKRGLRQGDPMSPYLFVIAVEYLTRLLKQLHQDRRFQYHLKCEKL 717
S+S+ +NG F R LRQG +SPYLFVI+++ L+++L + R+F YH KC +
Sbjct: 525 SFSVQVNGELAGVFSSARELRQGCSLSPYLFVISMDVLSKMLDKAVGARQFGYHPKCRAI 584
Query: 718 KIIQLSFADDLLLFSKGDVASVKLLMQYFTHFSQASRLHANLNKCSIYFGGVK-QVVQDQ 894
+ LSFADDL++ S G V S+ +++ F++ S L ++ K ++Y GV+ V Q+
Sbjct: 585 GLTHLSFADDLMILSDGKVRSIDGIVKVLYEFAKWSGLKISMEKSTMYLAGVQASVYQEI 644
Query: 895 ILECSMPKGEMHIRYSG 945
+ + S G++ +RY G
Sbjct: 645 VQKFSFDVGKLPVRYLG 661
Score = 30.4 bits (67), Expect(2) = 6e-52
Identities = 12/33 (36%), Positives = 23/33 (69%)
Frame = +3
Query: 948 LSTKLLSIVQCQLLLDKILGRVTSWTSKFLSYA 1046
L +K L+ C L++++ ++ +WTS+FLS+A
Sbjct: 664 LVSKRLTASDCLPLIEQLRKKIEAWTSRFLSFA 696
>gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]
Length = 740
Score = 197 bits (501), Expect(2) = 3e-51
Identities = 112/306 (36%), Positives = 171/306 (55%), Gaps = 4/306 (1%)
Frame = +1
Query: 40 SKASGRDGYNALFYKKTWGTIGEEVILAVLDFFNGNSMYKPGNCTVVTLIPKVKHPASIK 219
+K G DGY + F+K TW G++ I A+ FF + K N T++ LIPK ++
Sbjct: 41 NKFPGPDGYTSEFFKATWSITGQDFIAAIKSFFIKGFLPKGLNATILALIPKKDEATLMR 100
Query: 220 YYRPISCCNVLHKIISKIITKRLSGVMNALIDGSQSAFIPGRIVSDNIILSHELVKGILE 399
YRPISCCNV++K+ISKII RL ++ I +QSAF+ R++ +N++L+ ELVK +
Sbjct: 101 DYRPISCCNVIYKVISKIIANRLKVMLPTFILQNQSAFVRERLLIENVLLATELVKDYHK 160
Query: 400 KALQPDVC*NLIYRRHMIHLSGYFLNK***ACSF---LIQKIMGCITTVSYSITINGVGY 570
++ P + + + FL A +F I CI+T ++S+ +NG
Sbjct: 161 DSISPRCAMKIDISKAFDSVQWQFLLNTLEALNFPENFCHWIKLCISTATFSVQVNGELA 220
Query: 571 AFFEEKRGLRQGDPMSPYLFVIAVEYLTRLLKQLHQDRRFQYHLKCEKLKIIQLSFADDL 750
FF KRGLRQG +SPYLFVI + L+ ++ R YH KC+KL + L FADDL
Sbjct: 221 GFFGSKRGLRQGCALSPYLFVICMNVLSHMIDVAAVHRNIGYHPKCKKLSLTHLCFADDL 280
Query: 751 LLFSKGDVASVKLLMQYFTHFSQASRLHANLNKCSIYFGGVKQVVQDQILEC-SMPKGEM 927
++F G SV+ ++ F F+ S LH +L K ++Y GV ++ ++ IL G++
Sbjct: 281 MVFIDGQQRSVEGVINIFKEFAGKSGLHISLEKSTLYLAGVSELNRNNILSAFPFASGQL 340
Query: 928 HIRYSG 945
+RY G
Sbjct: 341 PVRYLG 346
Score = 32.7 bits (73), Expect(2) = 3e-51
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +3
Query: 948 LSTKLLSIVQCQLLLDKILGRVTSWTSKFLSYA 1046
L TK ++ LLDK+ +++SWT++ LSYA
Sbjct: 349 LLTKQMTTADYSPLLDKVRSKISSWTARSLSYA 381
>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
thaliana]
Length = 1072
Score = 207 bits (527), Expect = 6e-51
Identities = 114/316 (36%), Positives = 176/316 (55%), Gaps = 3/316 (0%)
Frame = +1
Query: 7 EVVAPIKDIDDSKASGRDGYNALFYKKTWGTIGEEVILAVLDFFNGNSMYKPGNCTVVTL 186
E+ A K + +K SG DGY+ F++ TW IG EV+ A+ +FF+ + K N T + L
Sbjct: 311 EIKAAFKSLPRNKTSGPDGYSVEFFRDTWSIIGPEVLAAIHEFFDSGQLLKQWNATTLVL 370
Query: 187 IPKVKHPASIKYYRPISCCNVLHKIISKIITKRLSGVMNALIDGSQSAFIPGRIVSDNII 366
IPK + +I +RPISC N L+K+ISK++T RL G+++A+I SQSAF+PGR +++N++
Sbjct: 371 IPKTSNACTISEFRPISCLNTLYKVISKLLTSRLQGLLSAVIGHSQSAFLPGRSLAENVL 430
Query: 367 LSHELVKGILEKALQPDVC*NLIYRRHMIHLSGYFLNK***ACSF---LIQKIMGCITTV 537
L+ E+V G + P + ++ + F+ A + I I CITT
Sbjct: 431 LATEMVHGYNRLNISPRGMLKVDLKKAFDSVKWEFVTAALRALAIPERYINWIHQCITTP 490
Query: 538 SYSITINGVGYAFFEEKRGLRQGDPMSPYLFVIAVEYLTRLLKQLHQDRRFQYHLKCEKL 717
S++I++NG FF +GLRQGDP+SPYLFV+A+E ++LL + YH K L
Sbjct: 491 SFTISVNGATGGFFRSTKGLRQGDPLSPYLFVLAMEVFSKLLYSRYDSGYIHYHPKAGDL 550
Query: 718 KIIQLSFADDLLLFSKGDVASVKLLMQYFTHFSQASRLHANLNKCSIYFGGVKQVVQDQI 897
I L FADD+++F G +S+ + + F+ S L N +K ++ G+ +
Sbjct: 551 SISHLMFADDVMIFFDGGSSSMHGICETLDDFADWSGLKVNKDKSQLFQAGLDLSERITS 610
Query: 898 LECSMPKGEMHIRYSG 945
P G IRY G
Sbjct: 611 AAYGFPAGTFPIRYLG 626
>dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
Length = 1072
Score = 207 bits (527), Expect = 6e-51
Identities = 114/316 (36%), Positives = 176/316 (55%), Gaps = 3/316 (0%)
Frame = +1
Query: 7 EVVAPIKDIDDSKASGRDGYNALFYKKTWGTIGEEVILAVLDFFNGNSMYKPGNCTVVTL 186
E+ A K + +K SG DGY+ F++ TW IG EV+ A+ +FF+ + K N T + L
Sbjct: 311 EIKAAFKSLPRNKTSGPDGYSVEFFRDTWSIIGPEVLAAIHEFFDSGQLLKQWNATTLVL 370
Query: 187 IPKVKHPASIKYYRPISCCNVLHKIISKIITKRLSGVMNALIDGSQSAFIPGRIVSDNII 366
IPK + +I +RPISC N L+K+ISK++T RL G+++A+I SQSAF+PGR +++N++
Sbjct: 371 IPKTSNACTISEFRPISCLNTLYKVISKLLTSRLQGLLSAVIGHSQSAFLPGRSLAENVL 430
Query: 367 LSHELVKGILEKALQPDVC*NLIYRRHMIHLSGYFLNK***ACSF---LIQKIMGCITTV 537
L+ E+V G + P + ++ + F+ A + I I CITT
Sbjct: 431 LATEMVHGYNRLNISPRGMLKVDLKKAFDSVKWEFVTAALRALAIPERYINWIHQCITTP 490
Query: 538 SYSITINGVGYAFFEEKRGLRQGDPMSPYLFVIAVEYLTRLLKQLHQDRRFQYHLKCEKL 717
S++I++NG FF +GLRQGDP+SPYLFV+A+E ++LL + YH K L
Sbjct: 491 SFTISVNGATGGFFRSTKGLRQGDPLSPYLFVLAMEVFSKLLYSRYDSGYIHYHPKAGDL 550
Query: 718 KIIQLSFADDLLLFSKGDVASVKLLMQYFTHFSQASRLHANLNKCSIYFGGVKQVVQDQI 897
I L FADD+++F G +S+ + + F+ S L N +K ++ G+ +
Sbjct: 551 SISHLMFADDVMIFFDGGSSSMHGICETLDDFADWSGLKVNKDKSQLFQAGLDLSERITS 610
Query: 898 LECSMPKGEMHIRYSG 945
P G IRY G
Sbjct: 611 AAYGFPAGTFPIRYLG 626
>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1216
Score = 199 bits (505), Expect(2) = 8e-51
Identities = 117/320 (36%), Positives = 179/320 (55%), Gaps = 7/320 (2%)
Frame = +1
Query: 7 EVVAPIKDIDDSKASGRDGYNALFYKKTWGTIGEEVILAVLDFFNGNSMYKPGNCTVVTL 186
E+ I + K+ G DGY + FYK +W IG+EVI+A+ FF + K N T++ L
Sbjct: 178 EIKKVIFSMPKDKSPGPDGYTSEFYKASWEIIGDEVIIAIQSFFAKGFLPKGVNSTILAL 237
Query: 187 IPKVKHPASIKYYRPISCCNVLHKIISKIITKRLSGVMNALIDGSQSAFIPGRIVSDNII 366
IPK K IK YRPISCCNVL+K ISKI+ RL ++ I G+QSAF+ R++ +N++
Sbjct: 238 IPKKKEAREIKDYRPISCCNVLYKAISKILANRLKRILPKFIVGNQSAFVKDRLLIENVL 297
Query: 367 LSHELVKGILEKALQPDVC*NLIYRRHMIHLSGYFLNK***ACSF---LIQKIMGCITTV 537
L+ ELVK + ++ + + L FL A +F I I C++T
Sbjct: 298 LATELVKDYHKDSISTRCAMKIDISKAFDSLQWSFLTHVLAAMNFPGEFIHWISLCMSTA 357
Query: 538 SYSITINGVGYAFFEEKRGLRQGDPMSPYLFVIAVEYLTRLLKQLHQDRRFQYHLKCEKL 717
S+SI +NG +F RGLRQG +SPYLFVI+++ L+R+L + R F YH +C+ L
Sbjct: 358 SFSIQVNGELAGYFRSARGLRQGCSLSPYLFVISMDVLSRMLDKAAGAREFGYHPRCKTL 417
Query: 718 KIIQLSFADDLLLFSKGDVASVKLLMQYFTHFSQASRLHANLNKCSIYFGGV----KQVV 885
+ L FADDL++ + G + SV +++ F+ L + K ++Y GV +Q++
Sbjct: 418 GLTHLCFADDLMILTDGKIRSVDGIVKVLNQFAAKLGLKICMEKTTLYLAGVSDHSRQLM 477
Query: 886 QDQILECSMPKGEMHIRYSG 945
+ S G++ +RY G
Sbjct: 478 SSRY---SFGVGKLPVRYLG 494
Score = 29.6 bits (65), Expect(2) = 8e-51
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +3
Query: 948 LSTKLLSIVQCQLLLDKILGRVTSWTSKFLSYA 1046
L TK L+ L+D+I R+ WTS++LS+A
Sbjct: 497 LVTKRLTTSDYSPLIDQIRRRIGMWTSRYLSFA 529
>gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]
Length = 872
Score = 205 bits (521), Expect = 3e-50
Identities = 115/317 (36%), Positives = 181/317 (57%), Gaps = 4/317 (1%)
Frame = +1
Query: 7 EVVAPIKDIDDSKASGRDGYNALFYKKTWGTIGEEVILAVLDFFNGNSMYKPGNCTVVTL 186
E+ + + K+ G DGY + FYK TW IG+E L V FF + K N ++ L
Sbjct: 104 EIKTVLFSMPKDKSPGPDGYTSEFYKATWDIIGQEFTLPVQSFFQKGFLPKGINSIILAL 163
Query: 187 IPKVKHPASIKYYRPISCCNVLHKIISKIITKRLSGVMNALIDGSQSAFIPGRIVSDNII 366
IPK ++ YRPISCCNVL+K+ISKII RL ++ I +QSAF+ R++ +N++
Sbjct: 164 IPKKLAAKEMRDYRPISCCNVLYKVISKIIANRLKLLLPRFIAENQSAFVKDRLLIENLL 223
Query: 367 LSHELVKGILEKALQPDVC*NLIYRRHMIHLSGYFLNK***ACSF---LIQKIMGCITTV 537
L+ ELVK + ++ + + + FL A +F I I CITT
Sbjct: 224 LATELVKDYHKDSISARCAIKIDISKAFDSVQWSFLTNTLVAMNFSPTFIHWINLCITTA 283
Query: 538 SYSITINGVGYAFFEEKRGLRQGDPMSPYLFVIAVEYLTRLLKQLHQDRRFQYHLKCEKL 717
S+S+ +NG +F+ KRGLRQG +SPYLFVI ++ L+++L + R+F +H KC++L
Sbjct: 284 SFSVQVNGDLVGYFQSKRGLRQGCSLSPYLFVICMDVLSKMLDKAAGVRKFGFHPKCQRL 343
Query: 718 KIIQLSFADDLLLFSKGDVASVKLLMQYFTHFSQASRLHANLNKCSIYFGGVKQVVQDQI 897
+ LSFADDL++ S G S++ +++ F F + S L +L K ++Y GV +++ +I
Sbjct: 344 GLTHLSFADDLMVLSDGKTRSIEGILEVFDEFCKRSGLRISLEKSTLYMAGVSPIIKQEI 403
Query: 898 -LECSMPKGEMHIRYSG 945
+ G++ +RY G
Sbjct: 404 AAKFLFDVGQLPVRYLG 420
>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
Length = 1214
Score = 201 bits (510), Expect(2) = 5e-50
Identities = 107/308 (34%), Positives = 173/308 (56%), Gaps = 3/308 (0%)
Frame = +1
Query: 31 IDDSKASGRDGYNALFYKKTWGTIGEEVILAVLDFFNGNSMYKPGNCTVVTLIPKVKHPA 210
+ +K+ G DGY + F+KKTW +G +I AV +FF + N T VT++PK +
Sbjct: 458 LPSNKSPGPDGYTSEFFKKTWSIVGPSLIAAVQEFFRSGRLLGQWNSTAVTMVPKKPNAD 517
Query: 211 SIKYYRPISCCNVLHKIISKIITKRLSGVMNALIDGSQSAFIPGRIVSDNIILSHELVKG 390
I +RPISCCN ++K+ISK++ +RL ++ I SQSAF+ GR++++N++L+ ELV+G
Sbjct: 518 RITEFRPISCCNAIYKVISKLLARRLENILPLWISPSQSAFVKGRLLTENVLLATELVQG 577
Query: 391 ILEKALQPDVC*NLIYRRHMIHLSGYFLNK***ACSF---LIQKIMGCITTVSYSITING 561
+ + + R+ + F+ + A + + I CIT+ S+SI ++G
Sbjct: 578 FGQANISSRGVLKVDLRKAFDSVGWGFIIETLKAANAPPRFVNWIKQCITSTSFSINVSG 637
Query: 562 VGYAFFEEKRGLRQGDPMSPYLFVIAVEYLTRLLKQLHQDRRFQYHLKCEKLKIIQLSFA 741
+F+ +GLRQGDP+SP LFVIA+E L+RLL+ D YH K +++I L+FA
Sbjct: 638 SLCGYFKGSKGLRQGDPLSPSLFVIAMEILSRLLENKFSDGSIGYHPKASEVRISSLAFA 697
Query: 742 DDLLLFSKGDVASVKLLMQYFTHFSQASRLHANLNKCSIYFGGVKQVVQDQILECSMPKG 921
DDL++F G +S++ + F S L N K ++Y G++ ++ L G
Sbjct: 698 DDLMIFYDGKASSLRGIKSVLESFKNLSGLEMNTEKSAVYTAGLEDTDKEDTLAFGFVNG 757
Query: 922 EMHIRYSG 945
RY G
Sbjct: 758 TFPFRYLG 765
Score = 25.0 bits (53), Expect(2) = 5e-50
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 987 LLDKILGRVTSWTSKFLSYA 1046
L+DKI R W +K LS+A
Sbjct: 781 LIDKIAARFNHWATKTLSFA 800
>emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 893
Score = 202 bits (515), Expect = 1e-49
Identities = 113/305 (37%), Positives = 172/305 (56%), Gaps = 3/305 (0%)
Frame = +1
Query: 40 SKASGRDGYNALFYKKTWGTIGEEVILAVLDFFNGNSMYKPGNCTVVTLIPKVKHPASIK 219
+KASG DGY++ F+K W +G EV AV +FF + K N T + LIPK+ + + +
Sbjct: 463 NKASGPDGYSSEFFKGVWFVVGPEVTEAVQEFFRSGQLLKQWNATTLVLIPKITNSSKMT 522
Query: 220 YYRPISCCNVLHKIISKIITKRLSGVMNALIDGSQSAFIPGRIVSDNIILSHELVKGILE 399
+RPISC N L+K+I+K++T RL ++N +I SQSAF+PGR++S+N++L+ E+V G
Sbjct: 523 DFRPISCLNTLYKVIAKLLTSRLKKLLNEVISPSQSAFLPGRLLSENVLLATEIVHGYNT 582
Query: 400 KALQPDVC*NLIYRRHMIHLSGYFLNK***ACSF---LIQKIMGCITTVSYSITINGVGY 570
K + + R+ + F+ A + + I CI+T +S+ +NG
Sbjct: 583 KNISSRGMLKVDLRKAFDSVRWDFIISAFRALAVPEKFVCWINQCISTPYFSVMVNGSSS 642
Query: 571 AFFEEKRGLRQGDPMSPYLFVIAVEYLTRLLKQLHQDRRFQYHLKCEKLKIIQLSFADDL 750
FF+ +GLRQGDP+SPYLFV+A+E + LLK QYH K L I L FADD+
Sbjct: 643 GFFKSNKGLRQGDPLSPYLFVLAMEVFSSLLKARFDAGYIQYHPKTADLSISHLMFADDV 702
Query: 751 LLFSKGDVASVKLLMQYFTHFSQASRLHANLNKCSIYFGGVKQVVQDQILECSMPKGEMH 930
++F G +S+ + + F+ S LH N +K ++Y G +V I P +
Sbjct: 703 MVFFDGGSSSLHGISEALDDFASWSGLHVNKDKTNLYLAGTDEVEALAISHYGFPISTLP 762
Query: 931 IRYSG 945
IRY G
Sbjct: 763 IRYLG 767
>emb|CAB72467.1| putative protein [Arabidopsis thaliana]
Length = 762
Score = 191 bits (484), Expect(2) = 3e-49
Identities = 110/317 (34%), Positives = 180/317 (56%), Gaps = 4/317 (1%)
Frame = +1
Query: 7 EVVAPIKDIDDSKASGRDGYNALFYKKTWGTIGEEVILAVLDFFNGNSMYKPGNCTVVTL 186
E+ + + + K+ G DG+ + F+K++W +G E ILA+ FF + K N T++ L
Sbjct: 10 EIKKVLFSMPNDKSPGPDGFTSEFFKESWEILGPEFILAIQSFFALGFLPKGVNSTILAL 69
Query: 187 IPKVKHPASIKYYRPISCCNVLHKIISKIITKRLSGVMNALIDGSQSAFIPGRIVSDNII 366
IPK +K YRPISCCNV++K+ISKI+ RL ++ I G+QS+F+ R++ +N++
Sbjct: 70 IPKKLESKEMKDYRPISCCNVMYKVISKILANRLKLLLPQFIAGNQSSFVKDRLLIENVL 129
Query: 367 LSHELVKGILEKALQPDVC*NLIYRRHMIHLSGYFLNK***ACSF---LIQKIMGCITTV 537
L+ +LVK + ++ + + + FL A F I I CITT
Sbjct: 130 LATDLVKDYHKDSISERCAIKIDISKASDSVQWSFLINTLTAMHFPEMFIHWIRLCITTP 189
Query: 538 SYSITINGVGYAFFEEKRGLRQGDPMSPYLFVIAVEYLTRLLKQLHQDRRFQYHLKCEKL 717
S+S+ +NG FF+ RGLRQG +SPYLFVI ++ L++LL ++ R YH C+++
Sbjct: 190 SFSVQVNGELAGFFQSSRGLRQGCALSPYLFVICMDVLSKLLDKVVGIGRIGYHPHCKRM 249
Query: 718 KIIQLSFADDLLLFSKGDVASVKLLMQYFTHFSQASRLHANLNKCSIYFGGVKQVVQDQI 897
+ LSFADDL++ + G S++ +++ F FS+ S L ++ K +I+ G+ + Q+
Sbjct: 250 GLTHLSFADDLMILTDGQCRSIEGIIEVFDLFSKWSGLKISMEKSTIFSAGLSSTSRAQL 309
Query: 898 -LECSMPKGEMHIRYSG 945
GE+ IRY G
Sbjct: 310 HTHFPFEVGELPIRYLG 326
Score = 32.3 bits (72), Expect(2) = 3e-49
Identities = 16/33 (48%), Positives = 23/33 (69%)
Frame = +3
Query: 948 LSTKLLSIVQCQLLLDKILGRVTSWTSKFLSYA 1046
L TK LS V L+++I R+ SW+S+FLS+A
Sbjct: 329 LVTKRLSSVDYAPLIEQIRKRIGSWSSRFLSFA 361
>dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
thaliana]
Length = 893
Score = 201 bits (510), Expect = 5e-49
Identities = 112/305 (36%), Positives = 171/305 (56%), Gaps = 3/305 (0%)
Frame = +1
Query: 40 SKASGRDGYNALFYKKTWGTIGEEVILAVLDFFNGNSMYKPGNCTVVTLIPKVKHPASIK 219
+KASG DGY++ F+K W +G EV AV +FF + K N T + LIPK+ + + +
Sbjct: 463 NKASGPDGYSSEFFKGVWFVVGPEVTEAVQEFFRSGQLLKQWNATTLVLIPKITNSSKMT 522
Query: 220 YYRPISCCNVLHKIISKIITKRLSGVMNALIDGSQSAFIPGRIVSDNIILSHELVKGILE 399
+RPISC N L+K+I+K++T RL ++N +I SQSAF+PGR++S+N++L+ E+V G
Sbjct: 523 DFRPISCLNTLYKVIAKLLTSRLKKLLNEVISPSQSAFLPGRLLSENVLLATEIVHGYNT 582
Query: 400 KALQPDVC*NLIYRRHMIHLSGYFLNK***ACSF---LIQKIMGCITTVSYSITINGVGY 570
K + + R+ + F+ A + + I CI+T +S+ +NG
Sbjct: 583 KNISSRGMLKVDLRKAFDSVRWDFIISAFRALAVPEKFVCWINQCISTPYFSVMVNGSSS 642
Query: 571 AFFEEKRGLRQGDPMSPYLFVIAVEYLTRLLKQLHQDRRFQYHLKCEKLKIIQLSFADDL 750
FF+ +GLRQGDP+SPYLFV+A+E + LLK YH K L I L FADD+
Sbjct: 643 GFFKSNKGLRQGDPLSPYLFVLAMEVFSSLLKARFDAGYIHYHPKTADLSISHLMFADDV 702
Query: 751 LLFSKGDVASVKLLMQYFTHFSQASRLHANLNKCSIYFGGVKQVVQDQILECSMPKGEMH 930
++F G +S+ + + F+ S LH N +K ++Y G +V I P +
Sbjct: 703 MVFFDGGSSSLHGISEALDDFASWSGLHVNKDKTNLYLAGTDEVEALAISHYGFPISTLP 762
Query: 931 IRYSG 945
IRY G
Sbjct: 763 IRYLG 767
>ref|XP_004253224.1| PREDICTED: uncharacterized protein LOC101268376 [Solanum
lycopersicum]
Length = 717
Score = 184 bits (468), Expect(2) = 6e-49
Identities = 111/264 (42%), Positives = 153/264 (57%), Gaps = 12/264 (4%)
Frame = +1
Query: 148 SMYKPGNCTVVTLIPKV------KHPASIKYYRPISCCNVLHKIIS---KIITKRLSGVM 300
S YK TV +P + + P +R C ++ + I K I + V+
Sbjct: 288 SFYKSLMGTVADRLPAINTQVMKRGPVLSIQHRIQLCATIIEQEIIEALKSIGNDKAPVI 347
Query: 301 NALIDGSQSAFIPGRIVSDNIILSHELVKGILEKALQPDVC*NLIYRRHMIHLSGYFLNK 480
+ +I SQ+ FIPGR + DNIIL+HELVK K + P + + + FL +
Sbjct: 348 HTIISDSQAGFIPGRKIGDNIILAHELVKAYTRKNVSPRCMLKIDLHKAYDSVEWPFLEQ 407
Query: 481 ***ACSF---LIQKIMGCITTVSYSITINGVGYAFFEEKRGLRQGDPMSPYLFVIAVEYL 651
F + +M C+ TV+Y+I +NG F+ +GLRQGDPMSP+LF IA+EYL
Sbjct: 408 VMEGLGFPDLFTKWVMKCVKTVNYTIVVNGQNTQRFDAAKGLRQGDPMSPFLFAIAMEYL 467
Query: 652 TRLLKQLHQDRRFQYHLKCEKLKIIQLSFADDLLLFSKGDVASVKLLMQYFTHFSQASRL 831
+RLLK L +D+ F+YH K KL + L FADDLLLFS+GD+ S+K L + FT FSQAS L
Sbjct: 468 SRLLKGLKEDKSFKYHPKYAKLDVTHLCFADDLLLFSRGDLNSIKALQKCFTEFSQASGL 527
Query: 832 HANLNKCSIYFGGVKQVVQDQILE 903
ANLNK SIY GGV+ V+ QI++
Sbjct: 528 QANLNKSSIYCGGVQMEVRQQIIQ 551
Score = 37.7 bits (86), Expect(2) = 6e-49
Identities = 16/33 (48%), Positives = 25/33 (75%)
Frame = +3
Query: 948 LSTKLLSIVQCQLLLDKILGRVTSWTSKFLSYA 1046
LS+K L+ +Q L++K++ R+ SWT+K LSYA
Sbjct: 569 LSSKKLNTIQWYPLIEKVMARINSWTAKKLSYA 601
>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1529
Score = 191 bits (485), Expect(2) = 8e-48
Identities = 113/308 (36%), Positives = 172/308 (55%), Gaps = 5/308 (1%)
Frame = +1
Query: 37 DSKASGRDGYNALFYKKTWGTIGEEVILAVLDFFNGNSMYKPGNCTVVTLIPKVKHPASI 216
++K+ G DGY + F+K TW G + I A+ FF + K N T++ LIPK +
Sbjct: 764 NNKSPGPDGYTSEFFKATWSLTGPDFIAAIQSFFVKGFLPKGLNATILALIPKKDEAIEM 823
Query: 217 KYYRPISCCNVLHKIISKIITKRLSGVMNALIDGSQSAFIPGRIVSDNIILSHELVKGIL 396
K YRPISCCNVL+K+ISKI+ RL ++ + I +QSAF+ R++ +N++L+ ELVK
Sbjct: 824 KDYRPISCCNVLYKVISKILANRLKLLLPSFILQNQSAFVKERLLMENVLLATELVKDYH 883
Query: 397 EKALQPDVC*NLIYRRHMIHLSGYFLNK***ACSF---LIQKIMGCITTVSYSITINGVG 567
++++ P + + + FL A +F I CI+T ++S+ +NG
Sbjct: 884 KESVTPRCAMKIDISKAFDSVQWQFLLNTLEALNFPETFRHWIKLCISTATFSVQVNGEL 943
Query: 568 YAFFEEKRGLRQGDPMSPYLFVIAVEYLTRLLKQLHQDRRFQYHLKCEKLKIIQLSFADD 747
FF RGLRQG +SPYLFVI + L+ ++ + R YH KCEK+ + L FADD
Sbjct: 944 AGFFGSSRGLRQGCALSPYLFVICMNVLSHMIDEAAVHRNIGYHPKCEKIGLTHLCFADD 1003
Query: 748 LLLFSKGDVASVKLLMQYFTHFSQASRLHANLNKCSIYFGGVKQVVQDQILECSMP--KG 921
L++F G S++ ++ F F+ S L +L K +IY GV + Q L S P G
Sbjct: 1004 LMVFVDGHQWSIEGVINVFKEFAGRSGLQISLEKSTIYLAGVSASDRVQTLS-SFPFANG 1062
Query: 922 EMHIRYSG 945
++ +RY G
Sbjct: 1063 QLPVRYLG 1070
Score = 27.3 bits (59), Expect(2) = 8e-48
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +3
Query: 948 LSTKLLSIVQCQLLLDKILGRVTSWTSKFLSYA 1046
L TK ++ L++ + +++SWT++ LSYA
Sbjct: 1073 LLTKQMTTADYSPLIEAVKTKISSWTARSLSYA 1105
>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
[Arabidopsis thaliana]
Length = 1164
Score = 194 bits (494), Expect = 4e-47
Identities = 110/305 (36%), Positives = 170/305 (55%), Gaps = 3/305 (0%)
Frame = +1
Query: 40 SKASGRDGYNALFYKKTWGTIGEEVILAVLDFFNGNSMYKPGNCTVVTLIPKVKHPASIK 219
+KASG DG++ F+ W IG EV A+ +FF + K N T + LIPK+ + +S+
Sbjct: 359 NKASGPDGFSPEFFCACWPIIGGEVTEAIHEFFTSGKLLKQWNATNLVLIPKITNASSMS 418
Query: 220 YYRPISCCNVLHKIISKIITKRLSGVMNALIDGSQSAFIPGRIVSDNIILSHELVKGILE 399
+RPISC N ++K+ISK++T RL + A I SQSAF+PGR+ +N++L+ ELV G +
Sbjct: 419 DFRPISCLNTVYKVISKLLTDRLKDFLPAAISHSQSAFMPGRLFLENVLLATELVHGYNK 478
Query: 400 KALQPDVC*NLIYRRHMIHLSGYFLNK***ACSF---LIQKIMGCITTVSYSITINGVGY 570
K + P + R+ + F+ A + I+ C++T S+S+ +NG
Sbjct: 479 KNIAPSSMLKVDLRKAFDSVRWDFIVSALRALNVPEKFTCWILECLSTASFSVILNGHSA 538
Query: 571 AFFEEKRGLRQGDPMSPYLFVIAVEYLTRLLKQLHQDRRFQYHLKCEKLKIIQLSFADDL 750
F +GLRQGDPMSPYLFV+A+E + LL+ + YH K +L+I L FADD+
Sbjct: 539 GHFWSSKGLRQGDPMSPYLFVLAMEVFSGLLQSRYTSGYIAYHPKTSQLEISHLMFADDV 598
Query: 751 LLFSKGDVASVKLLMQYFTHFSQASRLHANLNKCSIYFGGVKQVVQDQILECSMPKGEMH 930
++F G +S+ +++ F+ S L N NK +Y G+ Q D + G +
Sbjct: 599 MIFFDGKSSSLHGIVESLEDFAGWSGLLMNTNKTQLYHAGLSQSESDSMASYGFKLGSLP 658
Query: 931 IRYSG 945
+RY G
Sbjct: 659 VRYLG 663
>gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thaliana]
gi|20197043|gb|AAM14892.1| putative reverse transcriptase
[Arabidopsis thaliana]
Length = 1412
Score = 177 bits (450), Expect(2) = 4e-47
Identities = 108/317 (34%), Positives = 168/317 (52%), Gaps = 4/317 (1%)
Frame = +1
Query: 7 EVVAPIKDIDDSKASGRDGYNALFYKKTWGTIGEEVILAVLDFFNGNSMYKPGNCTVVTL 186
EV+ I +K+ G DGY F+++TW IG+EV +A+ FF + K N T++ L
Sbjct: 723 EVMKVFFSIPLNKSPGPDGYTVEFFRETWSVIGQEVTMAIKSFFTYGFLPKGLNSTILAL 782
Query: 187 IPKVKHPASIKYYRPISCCNVLHKIISKIITKRLSGVMNALIDGSQSAFIPGRIVSDNII 366
IPK + +K YRPISCCNVL+K ISK++ RL ++ I +QSAFI R++ +N++
Sbjct: 783 IPKRTYAKEMKDYRPISCCNVLYKAISKLLANRLKCLLPEFIAPNQSAFISDRLLMENLL 842
Query: 367 LSHELVKGILEKALQPDVC*NLIYRRHMIHLSGYFLNK***ACSF---LIQKIMGCITTV 537
L+ ELVK + L P + + + FL A I I CI+T
Sbjct: 843 LASELVKDYHKDGLSPRCAMKIDLSKAFDSVQWPFLLNTLAALDIPEKFIHWINLCISTA 902
Query: 538 SYSITINGVGYAFFEEKRGLRQGDPMSPYLFVIAVEYLTRLLKQLHQDRRFQYHLKCEKL 717
S+S+ +N GLRQG +SPYLFVI + L+ +L + ++RF YH +C +
Sbjct: 903 SFSVQVN-----------GLRQGCSLSPYLFVICMNVLSAMLDKGAVEKRFGYHPRCRNM 951
Query: 718 KIIQLSFADDLLLFSKGDVASVKLLMQYFTHFSQASRLHANLNKCSIYFGGVKQVVQDQI 897
+ L FADD+++FS G S++ ++ F F+ S L+ +L K +++ + I
Sbjct: 952 GLTHLCFADDIMVFSAGSAHSLEGVLAIFKDFAAFSGLNISLEKSTLFMASISSETCASI 1011
Query: 898 L-ECSMPKGEMHIRYSG 945
L G + +RY G
Sbjct: 1012 LARFPFDSGSLPVRYLG 1028
Score = 38.5 bits (88), Expect(2) = 4e-47
Identities = 16/33 (48%), Positives = 24/33 (72%)
Frame = +3
Query: 948 LSTKLLSIVQCQLLLDKILGRVTSWTSKFLSYA 1046
L TK +++ C LL+KI R++SW ++FLSYA
Sbjct: 1031 LMTKRMTLADCLPLLEKIRSRISSWKNRFLSYA 1063
>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
Length = 1213
Score = 192 bits (488), Expect = 2e-46
Identities = 104/316 (32%), Positives = 175/316 (55%), Gaps = 3/316 (0%)
Frame = +1
Query: 7 EVVAPIKDIDDSKASGRDGYNALFYKKTWGTIGEEVILAVLDFFNGNSMYKPGNCTVVTL 186
++ A + + +K+ G DG+ A F+ +W +G EV A+ +FF+ + K N T + L
Sbjct: 451 DIRAALFSLPRNKSCGPDGFTAEFFIDSWSIVGAEVTDAIKEFFSSGCLLKQWNATTIVL 510
Query: 187 IPKVKHPASIKYYRPISCCNVLHKIISKIITKRLSGVMNALIDGSQSAFIPGRIVSDNII 366
IPK+ +P +RPISC N L+K+I++++T RL +++ +I +QSAF+PGR +++N++
Sbjct: 511 IPKIVNPTCTSDFRPISCLNTLYKVIARLLTDRLQRLLSGVISSAQSAFLPGRSLAENVL 570
Query: 367 LSHELVKGILEKALQPDVC*NLIYRRHMIHLSGYFLNK***ACSF---LIQKIMGCITTV 537
L+ +LV G + P + ++ + F+ A + I I CI+T
Sbjct: 571 LATDLVHGYNWSNISPRGMLKVDLKKAFDSVRWEFVIAALRALAIPEKFINWISQCISTP 630
Query: 538 SYSITINGVGYAFFEEKRGLRQGDPMSPYLFVIAVEYLTRLLKQLHQDRRFQYHLKCEKL 717
+++++ING FF+ +GLRQGDP+SPYLFV+A+E + LL ++ YH K L
Sbjct: 631 TFTVSINGGNGGFFKSTKGLRQGDPLSPYLFVLAMEAFSNLLHSRYESGLIHYHPKASNL 690
Query: 718 KIIQLSFADDLLLFSKGDVASVKLLMQYFTHFSQASRLHANLNKCSIYFGGVKQVVQDQI 897
I L FADD+++F G S+ + + F+ S L N +K +Y G+ Q+ +
Sbjct: 691 SISHLMFADDVMIFFDGGSFSLHGICETLDDFASWSGLKVNKDKSHLYLAGLNQLESNAN 750
Query: 898 LECSMPKGEMHIRYSG 945
P G + IRY G
Sbjct: 751 AAYGFPIGTLPIRYLG 766