BLASTX nr result
ID: Atropa21_contig00033118
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Atropa21_contig00033118
(1700 letters)
Database: nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulga... 272 4e-70
gb|ABD33261.1| RNA-directed DNA polymerase (Reverse transcriptas... 260 1e-66
emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga... 249 3e-63
ref|XP_004252692.1| PREDICTED: uncharacterized protein LOC101261... 218 5e-54
ref|XP_004247247.1| PREDICTED: uncharacterized protein LOC101256... 215 5e-53
ref|XP_004253224.1| PREDICTED: uncharacterized protein LOC101268... 212 3e-52
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta... 204 9e-50
gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana] 199 4e-48
gb|EMJ15226.1| hypothetical protein PRUPE_ppa016677mg [Prunus pe... 136 3e-46
gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana] 191 8e-46
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip... 191 8e-46
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ... 190 2e-45
dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ... 189 2e-45
dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana] 189 2e-45
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta... 188 5e-45
gb|ABA99600.2| retrotransposon protein, putative, unclassified [... 122 9e-45
emb|CAN62743.1| hypothetical protein VITISV_033107 [Vitis vinifera] 127 2e-44
gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thali... 185 6e-44
gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana] 157 1e-35
dbj|BAF00918.1| putative reverse transcriptase [Arabidopsis thal... 157 1e-35
>emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1110
Score = 272 bits (695), Expect = 4e-70
Identities = 137/308 (44%), Positives = 202/308 (65%)
Frame = +1
Query: 370 TSCISLTQRNINIMKNEPVLSHAHGIELCKKVSDEEIYEALQSIGDDKVPGVDEYSAHFY 549
T +L ++N ++ LS L ++V+ EI EAL IG+DK PG+D ++A+F+
Sbjct: 407 TRASTLMGVDLNTVRGGKCLSAQAKESLIREVASTEIDEALAGIGNDKAPGLDGFNAYFF 466
Query: 550 KKSWNIIKGDLMAVVRDFFYKGKLYRPIECTFITLFPKTACPIIVKEYRPIACCSALFKI 729
KKSW IK ++ A +++FF +++RPI C +TL PK VKE+RPIACC+ ++KI
Sbjct: 467 KKSWGSIKQEIYAGIQEFFNNSRMHRPINCIVVTLLPKVQHATRVKEFRPIACCTVIYKI 526
Query: 730 IAKVLASRLQIIIALVTSESQSWIIPGRKIANNIILVTELVKAYSQKHIFPRCMVKIDLQ 909
I+K+L +R++ II V +E+QS IPGR IA+NI+L +EL++ Y++KH+ PRC++K+D++
Sbjct: 527 ISKMLTNRMKGIIGEVVNEAQSGFIPGRHIADNILLASELIRGYTRKHMSPRCIMKVDIR 586
Query: 910 KAYDSVGWVYLKQILEALCFPVKFVEWHMECIYTVNHSITINEESTPPLI*CS*GT*TRE 1089
KAYDSV W +L+ +L FP +FV W MEC+ TV++S+ +N T P G +
Sbjct: 587 KAYDSVEWSFLETLLYEFGFPSRFVGWIMECVSTVSYSVLVNGIPTQPFQ-ARKGLRQGD 645
Query: 1090 THFPFLVFHCHGYLSRCLVELRVTKNFKFYPKCARFEITHLCFADDLLLFARGDLASVQT 1269
PFL C YLSRCL EL+ + +F F+PKC R ITHL FADDLL+F R D +S+
Sbjct: 646 PMSPFLFALCMEYLSRCLEELKGSPDFNFHPKCERLNITHLMFADDLLMFCRADKSSLDH 705
Query: 1270 LPVFPQVF 1293
+ V Q F
Sbjct: 706 MNVAFQKF 713
Score = 147 bits (371), Expect = 1e-32
Identities = 83/221 (37%), Positives = 126/221 (57%), Gaps = 10/221 (4%)
Frame = +2
Query: 1058 FDAAKGLRQGKPISPFLFSIAMDTSVDVLLN*GLPKILNSIPNVLDLK*HTSA--LLMIY 1231
F A KGLRQG P+SPFLF++ M+ L + L + D H L + +
Sbjct: 635 FQARKGLRQGDPMSPFLFALCMEY---------LSRCLEELKGSPDFNFHPKCERLNITH 685
Query: 1232 YFLQEEI*LLCK--------LYQFFLKFSKASGLQANIGKSSIYFGGVADATKATIFQHL 1387
+++ + C+ + F KFS ASGL A+ KS+IYF GV D T + ++
Sbjct: 686 LMFADDLLMFCRADKSSLDHMNVAFQKFSHASGLAASHEKSNIYFCGVDDETARELADYV 745
Query: 1388 GFSLGELPFKYLGIPLSTKKLTILQWTPLIDKIVARISSLTAKKLSYAGRVQLVQLVLFG 1567
LGELPF+YLG+PL++KKLT Q PL++ I R + AK LSYAGR+QL++ +L
Sbjct: 746 HMQLGELPFRYLGVPLTSKKLTYAQCKPLVEMITNRAQTWMAKLLSYAGRLQLIKSILSS 805
Query: 1568 IQAYWS*LFVIPSKELKFIDAYCRSYVWSGINTITKRALIA 1690
+Q YW+ +F + K ++ ++ CR ++W+G TK+A +A
Sbjct: 806 MQNYWAHIFPLSKKVIQAVEKVCRKFLWTGKTEETKKAPVA 846
>gb|ABD33261.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
truncatula]
Length = 402
Score = 260 bits (664), Expect = 1e-66
Identities = 135/301 (44%), Positives = 188/301 (62%)
Frame = +1
Query: 370 TSCISLTQRNINIMKNEPVLSHAHGIELCKKVSDEEIYEALQSIGDDKVPGVDEYSAHFY 549
+S SL + N++K P+LS LC K + E+ L S+ K PG+D Y+ HF+
Sbjct: 90 SSVDSLPMVDKNVVKRGPMLSQHQQDLLCSKFTAVEVKNVLFSMDSSKAPGIDGYNVHFF 149
Query: 550 KKSWNIIKGDLMAVVRDFFYKGKLYRPIECTFITLFPKTACPIIVKEYRPIACCSALFKI 729
K SWNII ++ + DFF G + + I CT++TL PK VK +RPIACCS ++KI
Sbjct: 150 KCSWNIIGDSVIDAILDFFKTGFMPKIINCTYMTLLPKEVNVTSVKNFRPIACCSVIYKI 209
Query: 730 IAKVLASRLQIIIALVTSESQSWIIPGRKIANNIILVTELVKAYSQKHIFPRCMVKIDLQ 909
I+K+L SR+Q ++ V SE+QS + GR I +NIIL ELVK+YS+K I PRCMVKIDLQ
Sbjct: 210 ISKILTSRMQGVLNSVVSENQSAFVKGRVIFDNIILSHELVKSYSRKGISPRCMVKIDLQ 269
Query: 910 KAYDSVGWVYLKQILEALCFPVKFVEWHMECIYTVNHSITINEESTPPLI*CS*GT*TRE 1089
KAY+SV W ++K ++ L F KFV W M C+ T +++ IN + T P G +
Sbjct: 270 KAYNSVEWPFIKHLMLELGFSYKFVNWVMGCLTTASYTFNINGDLTRPFA-AKKGLRQGD 328
Query: 1090 THFPFLVFHCHGYLSRCLVELRVTKNFKFYPKCARFEITHLCFADDLLLFARGDLASVQT 1269
P+L C YL+ CL++LR F+F+P+C R + H+CF DDLLLF+RGD+ SV
Sbjct: 329 PISPYLFVICMEYLNICLIQLRKNAAFRFHPRCKRLNLIHVCFVDDLLLFSRGDVDSVSQ 388
Query: 1270 L 1272
L
Sbjct: 389 L 389
>emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1114
Score = 249 bits (636), Expect = 3e-63
Identities = 125/301 (41%), Positives = 190/301 (63%)
Frame = +1
Query: 370 TSCISLTQRNINIMKNEPVLSHAHGIELCKKVSDEEIYEALQSIGDDKVPGVDEYSAHFY 549
TS L ++++++ LS +L + ++ +EI +AL I D K PG+D +++ F+
Sbjct: 410 TSSSQLEAIDLHVVRVGAKLSATSCAQLVQPITIQEIDQALADIDDTKAPGLDGFNSVFF 469
Query: 550 KKSWNIIKGDLMAVVRDFFYKGKLYRPIECTFITLFPKTACPIIVKEYRPIACCSALFKI 729
KKSW +IK ++ + DFF G +++PI CT +TL PK K+YRPIACCS L+KI
Sbjct: 470 KKSWLVIKQEIYEGILDFFENGFMHKPINCTAVTLIPKIDEAKHAKDYRPIACCSTLYKI 529
Query: 730 IAKVLASRLQIIIALVTSESQSWIIPGRKIANNIILVTELVKAYSQKHIFPRCMVKIDLQ 909
I+K+L RLQ +I V +Q+ IP R I +NI+L TEL++ Y+++H+ PRC++K+D++
Sbjct: 530 ISKILTKRLQAVITEVVDCAQTGFIPERHIGDNILLATELIRGYNRRHVSPRCVIKVDIR 589
Query: 910 KAYDSVGWVYLKQILEALCFPVKFVEWHMECIYTVNHSITINEESTPPLI*CS*GT*TRE 1089
KAYDSV WV+L+ +L+ L FP F+ W M C+ TV++SI +N + P G +
Sbjct: 590 KAYDSVEWVFLESMLKELGFPSMFIRWIMACVKTVSYSILLNGIPSIPFD-AQKGLRQGD 648
Query: 1090 THFPFLVFHCHGYLSRCLVELRVTKNFKFYPKCARFEITHLCFADDLLLFARGDLASVQT 1269
PFL YLSRC+ + F F+PKC R ++THL FADDLL+FAR D +S+
Sbjct: 649 PLSPFLFALSMEYLSRCMGNMCKDPEFNFHPKCERIKLTHLMFADDLLMFARADASSISK 708
Query: 1270 L 1272
+
Sbjct: 709 I 709
Score = 155 bits (393), Expect = 4e-35
Identities = 87/214 (40%), Positives = 123/214 (57%), Gaps = 1/214 (0%)
Frame = +2
Query: 1058 FDAAKGLRQGKPISPFLFSIAMDTSVDVLLN*GLPKILNSIPNVLDLK*-HTSALLMIYY 1234
FDA KGLRQG P+SPFLF+++M+ + N N P +K H +
Sbjct: 638 FDAQKGLRQGDPLSPFLFALSMEYLSRCMGNMCKDPEFNFHPKCERIKLTHLMFADDLLM 697
Query: 1235 FLQEEI*LLCKLYQFFLKFSKASGLQANIGKSSIYFGGVADATKATIFQHLGFSLGELPF 1414
F + + + K+ F FSKASGLQA+I KS IYFGGV + + +G LPF
Sbjct: 698 FARADASSISKIMAAFNSFSKASGLQASIEKSCIYFGGVCHEEAEQLADRIQMPIGSLPF 757
Query: 1415 KYLGIPLSTKKLTILQWTPLIDKIVARISSLTAKKLSYAGRVQLVQLVLFGIQAYWS*LF 1594
+YLG+PL++KKL Q PLIDKI R A LSYAGR+QLV+ +L+ +Q YW +F
Sbjct: 758 RYLGVPLASKKLNFSQCKPLIDKITTRAQGWVAHLLSYAGRLQLVKTILYSMQNYWGQIF 817
Query: 1595 VIPSKELKFIDAYCRSYVWSGINTITKRALIA*D 1696
+P K +K ++ CR ++W+G + +A +A D
Sbjct: 818 PLPKKLIKAVETTCRKFLWTGTVDTSYKAPVAWD 851
>ref|XP_004252692.1| PREDICTED: uncharacterized protein LOC101261795 [Solanum
lycopersicum]
Length = 413
Score = 218 bits (556), Expect = 5e-54
Identities = 102/197 (51%), Positives = 140/197 (71%)
Frame = +1
Query: 397 NINIMKNEPVLSHAHGIELCKKVSDEEIYEALQSIGDDKVPGVDEYSAHFYKKSWNIIKG 576
N +MK PV S I+LC ++++EIY LQS G+DK PG+D Y+A F+K +W IIK
Sbjct: 217 NAQVMKRGPVSSRQQRIQLCTDITEQEIYSTLQSYGNDKAPGIDGYNALFFKHTWKIIKK 276
Query: 577 DLMAVVRDFFYKGKLYRPIECTFITLFPKTACPIIVKEYRPIACCSALFKIIAKVLASRL 756
D++ V++FF GKL++P CT ++L PK CP VKEY PIACC+ L+KII+KV+ R+
Sbjct: 277 DVIEAVKNFFTTGKLFKPFNCTLVSLIPKVQCPKTVKEYTPIACCTVLYKIISKVITRRM 336
Query: 757 QIIIALVTSESQSWIIPGRKIANNIILVTELVKAYSQKHIFPRCMVKIDLQKAYDSVGWV 936
+I V ESQ+ IPGRKIA+NIIL ELVK Y++K+I PR ++KIDL KAYDSV W
Sbjct: 337 HDVIHDVICESQAGFIPGRKIADNIILAHELVKTYTRKNISPRIILKIDLHKAYDSVEWP 396
Query: 937 YLKQILEALCFPVKFVE 987
+L+Q++ L FP F++
Sbjct: 397 FLEQVMVGLGFPEMFIQ 413
>ref|XP_004247247.1| PREDICTED: uncharacterized protein LOC101256917 [Solanum
lycopersicum]
Length = 421
Score = 215 bits (547), Expect = 5e-53
Identities = 100/195 (51%), Positives = 141/195 (72%)
Frame = +1
Query: 463 VSDEEIYEALQSIGDDKVPGVDEYSAHFYKKSWNIIKGDLMAVVRDFFYKGKLYRPIECT 642
V++E+I+ ALQSIG+DK PG+D Y+A F+K +W IIK D++ VV+ FF GKL++P CT
Sbjct: 106 VTEEKIFAALQSIGNDKAPGIDGYNAFFFKYTWKIIKNDIIEVVQSFFKPGKLFKPFNCT 165
Query: 643 FITLFPKTACPIIVKEYRPIACCSALFKIIAKVLASRLQIIIALVTSESQSWIIPGRKIA 822
++L PK P VKEYR I CC+ L+KII+KV+ +R+ +I V +SQ I GRKI+
Sbjct: 166 LVSLIPKVQSPKNVKEYRTITCCTVLYKIISKVITNRMHDVIHNVICDSQVGFILGRKIS 225
Query: 823 NNIILVTELVKAYSQKHIFPRCMVKIDLQKAYDSVGWVYLKQILEALCFPVKFVEWHMEC 1002
NI+L ELV +Y++K+I PR M+KIDLQK YDSV W +LKQ++ L FP F +W M C
Sbjct: 226 ENILLAHELVNSYTRKNISPRSMLKIDLQKVYDSVEWPFLKQVMVGLGFPDMFTQWVMHC 285
Query: 1003 IYTVNHSITINEEST 1047
+ TVN++I +N ++T
Sbjct: 286 VKTVNYTIVVNGQTT 300
Score = 87.4 bits (215), Expect = 2e-14
Identities = 41/69 (59%), Positives = 54/69 (78%)
Frame = +2
Query: 1280 FLKFSKASGLQANIGKSSIYFGGVADATKATIFQHLGFSLGELPFKYLGIPLSTKKLTIL 1459
FL+FS+ASG QAN+ KSSIY GGV + I + L + + E+PFKYLG+PLS+KKL+IL
Sbjct: 333 FLEFSQASGQQANLNKSSIYCGGVQMEVRQQIVRQLHYKMEEIPFKYLGVPLSSKKLSIL 392
Query: 1460 QWTPLIDKI 1486
QW PLI+K+
Sbjct: 393 QWYPLIEKL 401
>ref|XP_004253224.1| PREDICTED: uncharacterized protein LOC101268376 [Solanum
lycopersicum]
Length = 717
Score = 212 bits (540), Expect = 3e-52
Identities = 114/215 (53%), Positives = 149/215 (69%), Gaps = 1/215 (0%)
Frame = +2
Query: 1058 FDAAKGLRQGKPISPFLFSIAMDTSVDVLLN*GLPKILNSIPNVLDLK*-HTSALLMIYY 1234
FDAAKGLRQG P+SPFLF+IAM+ +L K P L H +
Sbjct: 443 FDAAKGLRQGDPMSPFLFAIAMEYLSRLLKGLKEDKSFKYHPKYAKLDVTHLCFADDLLL 502
Query: 1235 FLQEEI*LLCKLYQFFLKFSKASGLQANIGKSSIYFGGVADATKATIFQHLGFSLGELPF 1414
F + ++ + L + F +FS+ASGLQAN+ KSSIY GGV + I Q LG+++ ELPF
Sbjct: 503 FSRGDLNSIKALQKCFTEFSQASGLQANLNKSSIYCGGVQMEVRQQIIQQLGYTIEELPF 562
Query: 1415 KYLGIPLSTKKLTILQWTPLIDKIVARISSLTAKKLSYAGRVQLVQLVLFGIQAYWS*LF 1594
KYLG+PLS+KKL +QW PLI+K++ARI+S TAKKLSYAGR QLV+ VLFG+QA W+ LF
Sbjct: 563 KYLGVPLSSKKLNTIQWYPLIEKVMARINSWTAKKLSYAGRAQLVKTVLFGVQALWAQLF 622
Query: 1595 VIPSKELKFIDAYCRSYVWSGINTITKRALIA*DK 1699
+IP+K +K I+ CRSY+WSG+ +TK+ALIA DK
Sbjct: 623 IIPAKIIKLIEGLCRSYLWSGVGYVTKKALIAWDK 657
Score = 172 bits (437), Expect = 3e-40
Identities = 92/203 (45%), Positives = 134/203 (66%), Gaps = 3/203 (1%)
Frame = +1
Query: 673 PIIVKEYRPIACCSALFKIIAKVLAS---RLQIIIALVTSESQSWIIPGRKIANNIILVT 843
P++ ++R C + + + I + L S +I + S+SQ+ IPGRKI +NIIL
Sbjct: 313 PVLSIQHRIQLCATIIEQEIIEALKSIGNDKAPVIHTIISDSQAGFIPGRKIGDNIILAH 372
Query: 844 ELVKAYSQKHIFPRCMVKIDLQKAYDSVGWVYLKQILEALCFPVKFVEWHMECIYTVNHS 1023
ELVKAY++K++ PRCM+KIDL KAYDSV W +L+Q++E L FP F +W M+C+ TVN++
Sbjct: 373 ELVKAYTRKNVSPRCMLKIDLHKAYDSVEWPFLEQVMEGLGFPDLFTKWVMKCVKTVNYT 432
Query: 1024 ITINEESTPPLI*CS*GT*TRETHFPFLVFHCHGYLSRCLVELRVTKNFKFYPKCARFEI 1203
I +N ++T + G + PFL YLSR L L+ K+FK++PK A+ ++
Sbjct: 433 IVVNGQNTQRFD-AAKGLRQGDPMSPFLFAIAMEYLSRLLKGLKEDKSFKYHPKYAKLDV 491
Query: 1204 THLCFADDLLLFARGDLASVQTL 1272
THLCFADDLLLF+RGDL S++ L
Sbjct: 492 THLCFADDLLLFSRGDLNSIKAL 514
>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1529
Score = 204 bits (519), Expect = 9e-50
Identities = 108/284 (38%), Positives = 168/284 (59%)
Frame = +1
Query: 451 LCKKVSDEEIYEALQSIGDDKVPGVDEYSAHFYKKSWNIIKGDLMAVVRDFFYKGKLYRP 630
L ++V+ EEI + L ++ ++K PG D Y++ F+K +W++ D +A ++ FF KG L +
Sbjct: 746 LTREVTGEEIQKVLFAMPNNKSPGPDGYTSEFFKATWSLTGPDFIAAIQSFFVKGFLPKG 805
Query: 631 IECTFITLFPKTACPIIVKEYRPIACCSALFKIIAKVLASRLQIIIALVTSESQSWIIPG 810
+ T + L PK I +K+YRPI+CC+ L+K+I+K+LA+RL++++ ++QS +
Sbjct: 806 LNATILALIPKKDEAIEMKDYRPISCCNVLYKVISKILANRLKLLLPSFILQNQSAFVKE 865
Query: 811 RKIANNIILVTELVKAYSQKHIFPRCMVKIDLQKAYDSVGWVYLKQILEALCFPVKFVEW 990
R + N++L TELVK Y ++ + PRC +KID+ KA+DSV W +L LEAL FP F W
Sbjct: 866 RLLMENVLLATELVKDYHKESVTPRCAMKIDISKAFDSVQWQFLLNTLEALNFPETFRHW 925
Query: 991 HMECIYTVNHSITINEESTPPLI*CS*GT*TRETHFPFLVFHCHGYLSRCLVELRVTKNF 1170
CI T S+ +N E S G P+L C LS + E V +N
Sbjct: 926 IKLCISTATFSVQVNGE-LAGFFGSSRGLRQGCALSPYLFVICMNVLSHMIDEAAVHRNI 984
Query: 1171 KFYPKCARFEITHLCFADDLLLFARGDLASVQTLPVFPQVFKGF 1302
++PKC + +THLCFADDL++F G S++ + VFK F
Sbjct: 985 GYHPKCEKIGLTHLCFADDLMVFVDGHQWSIEGV---INVFKEF 1025
Score = 114 bits (285), Expect = 1e-22
Identities = 67/212 (31%), Positives = 117/212 (55%), Gaps = 1/212 (0%)
Frame = +2
Query: 1058 FDAAKGLRQGKPISPFLFSIAMDTSVDVLLN*GLPKILNSIPNVLDLK*-HTSALLMIYY 1234
F +++GLRQG +SP+LF I M+ ++ + + + P + H +
Sbjct: 947 FGSSRGLRQGCALSPYLFVICMNVLSHMIDEAAVHRNIGYHPKCEKIGLTHLCFADDLMV 1006
Query: 1235 FLQEEI*LLCKLYQFFLKFSKASGLQANIGKSSIYFGGVADATKATIFQHLGFSLGELPF 1414
F+ + + F +F+ SGLQ ++ KS+IY GV+ + + F+ G+LP
Sbjct: 1007 FVDGHQWSIEGVINVFKEFAGRSGLQISLEKSTIYLAGVSASDRVQTLSSFPFANGQLPV 1066
Query: 1415 KYLGIPLSTKKLTILQWTPLIDKIVARISSLTAKKLSYAGRVQLVQLVLFGIQAYWS*LF 1594
+YLG+PL TK++T ++PLI+ + +ISS TA+ LSYAGR+ L+ V+ I +W +
Sbjct: 1067 RYLGLPLLTKQMTTADYSPLIEAVKTKISSWTARSLSYAGRLALLNSVIVSIANFWMSAY 1126
Query: 1595 VIPSKELKFIDAYCRSYVWSGINTITKRALIA 1690
+P+ ++ I+ C +++WSG K+A IA
Sbjct: 1127 RLPAGCIREIEKLCSAFLWSGPVLNPKKAKIA 1158
>gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]
Length = 740
Score = 199 bits (505), Expect = 4e-48
Identities = 104/288 (36%), Positives = 164/288 (56%)
Frame = +1
Query: 451 LCKKVSDEEIYEALQSIGDDKVPGVDEYSAHFYKKSWNIIKGDLMAVVRDFFYKGKLYRP 630
L ++V+ EE + L ++ +K PG D Y++ F+K +W+I D +A ++ FF KG L +
Sbjct: 22 LTREVTSEENQKVLFAMPSNKFPGPDGYTSEFFKATWSITGQDFIAAIKSFFIKGFLPKG 81
Query: 631 IECTFITLFPKTACPIIVKEYRPIACCSALFKIIAKVLASRLQIIIALVTSESQSWIIPG 810
+ T + L PK ++++YRPI+CC+ ++K+I+K++A+RL++++ ++QS +
Sbjct: 82 LNATILALIPKKDEATLMRDYRPISCCNVIYKVISKIIANRLKVMLPTFILQNQSAFVRE 141
Query: 811 RKIANNIILVTELVKAYSQKHIFPRCMVKIDLQKAYDSVGWVYLKQILEALCFPVKFVEW 990
R + N++L TELVK Y + I PRC +KID+ KA+DSV W +L LEAL FP F W
Sbjct: 142 RLLIENVLLATELVKDYHKDSISPRCAMKIDISKAFDSVQWQFLLNTLEALNFPENFCHW 201
Query: 991 HMECIYTVNHSITINEESTPPLI*CS*GT*TRETHFPFLVFHCHGYLSRCLVELRVTKNF 1170
CI T S+ +N E G P+L C LS + V +N
Sbjct: 202 IKLCISTATFSVQVNGE-LAGFFGSKRGLRQGCALSPYLFVICMNVLSHMIDVAAVHRNI 260
Query: 1171 KFYPKCARFEITHLCFADDLLLFARGDLASVQTLPVFPQVFKGFWSSS 1314
++PKC + +THLCFADDL++F G SV+ + +FK F S
Sbjct: 261 GYHPKCKKLSLTHLCFADDLMVFIDGQQRSVEGV---INIFKEFAGKS 305
Score = 119 bits (299), Expect = 3e-24
Identities = 67/211 (31%), Positives = 118/211 (55%), Gaps = 1/211 (0%)
Frame = +2
Query: 1058 FDAAKGLRQGKPISPFLFSIAMDTSVDVLLN*GLPKILNSIPNVLDLK*-HTSALLMIYY 1234
F + +GLRQG +SP+LF I M+ ++ + + + P L H +
Sbjct: 223 FGSKRGLRQGCALSPYLFVICMNVLSHMIDVAAVHRNIGYHPKCKKLSLTHLCFADDLMV 282
Query: 1235 FLQEEI*LLCKLYQFFLKFSKASGLQANIGKSSIYFGGVADATKATIFQHLGFSLGELPF 1414
F+ + + + F +F+ SGL ++ KS++Y GV++ + I F+ G+LP
Sbjct: 283 FIDGQQRSVEGVINIFKEFAGKSGLHISLEKSTLYLAGVSELNRNNILSAFPFASGQLPV 342
Query: 1415 KYLGIPLSTKKLTILQWTPLIDKIVARISSLTAKKLSYAGRVQLVQLVLFGIQAYWS*LF 1594
+YLG+PL TK++T ++PL+DK+ ++ISS TA+ LSYAGR+ L+ V+ + +W +
Sbjct: 343 RYLGLPLLTKQMTTADYSPLLDKVRSKISSWTARSLSYAGRLALINSVIVSLSNFWMSAY 402
Query: 1595 VIPSKELKFIDAYCRSYVWSGINTITKRALI 1687
+P+ +K I+ C +++WSG K+A I
Sbjct: 403 RLPAGCIKEIEKLCSAFLWSGPELNPKKAKI 433
>gb|EMJ15226.1| hypothetical protein PRUPE_ppa016677mg [Prunus persica]
Length = 1421
Score = 136 bits (342), Expect(2) = 3e-46
Identities = 72/188 (38%), Positives = 114/188 (60%)
Frame = +1
Query: 472 EEIYEALQSIGDDKVPGVDEYSAHFYKKSWNIIKGDLMAVVRDFFYKGKLYRPIECTFIT 651
EE+ +A+ G DK PG D +S F++ W ++KGDLM V++DFF G + TFI
Sbjct: 707 EEVQKAVFDCGKDKSPGPDGFSMSFFQSCWEVVKGDLMKVMQDFFQSGIVNGVTNETFIC 766
Query: 652 LFPKTACPIIVKEYRPIACCSALFKIIAKVLASRLQIIIALVTSESQSWIIPGRKIANNI 831
L PK A + V +YRPI+ ++L+K+I+KVLASRL+ ++ S+SQ + R+I + +
Sbjct: 767 LIPKKANSVKVTDYRPISLVTSLYKVISKVLASRLREVLGNTISQSQGAFVQKRQILDAV 826
Query: 832 ILVTELVKAYSQKHIFPRCMVKIDLQKAYDSVGWVYLKQILEALCFPVKFVEWHMECIYT 1011
++ E+V+ +K + KID +KAYD V W ++ ++ F VK+ W + C+ +
Sbjct: 827 LVANEVVEEV-RKQKRKGLVFKIDFEKAYDHVEWNFVDDVMARKGFGVKWRGWIIGCLES 885
Query: 1012 VNHSITIN 1035
VN SI IN
Sbjct: 886 VNFSIMIN 893
Score = 78.2 bits (191), Expect(2) = 3e-46
Identities = 56/210 (26%), Positives = 88/210 (41%)
Frame = +2
Query: 1058 FDAAKGLRQGKPISPFLFSIAMDTSVDVLLN*GLPKILNSIPNVLDLK*HTSALLMIYYF 1237
F A++GLRQG P+SPFLF++ M+ S H +
Sbjct: 900 FRASRGLRQGDPLSPFLFTLVMEVS------------------------HLQFADDTIFL 935
Query: 1238 LQEEI*LLCKLYQFFLKFSKASGLQANIGKSSIYFGGVADATKATIFQHLGFSLGELPFK 1417
L + L Q F SG++ N KS I + + G +G P
Sbjct: 936 LDGKEEYWLNLLQLLKLFCDVSGMKINKAKSCILGINFSTEVLNNMAGSWGCEVGCWPMI 995
Query: 1418 YLGIPLSTKKLTILQWTPLIDKIVARISSLTAKKLSYAGRVQLVQLVLFGIQAYWS*LFV 1597
YLG+PL + W P+++K+ R+ LS GR+ L+Q VL I +Y+ LF
Sbjct: 996 YLGLPLGGNPRALNFWNPVMEKVEKRLQKWKRACLSKGGRLTLIQAVLSSIPSYYMSLFK 1055
Query: 1598 IPSKELKFIDAYCRSYVWSGINTITKRALI 1687
+P ++ R+++W G+ K L+
Sbjct: 1056 MPIGVAAKVEQLMRNFLWEGLEEGKKCHLV 1085
>gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]
Length = 872
Score = 191 bits (485), Expect = 8e-46
Identities = 105/283 (37%), Positives = 161/283 (56%), Gaps = 1/283 (0%)
Frame = +1
Query: 451 LCKKVSDEEIYEALQSIGDDKVPGVDEYSAHFYKKSWNIIKGDLMAVVRDFFYKGKLYRP 630
L ++VS EEI L S+ DK PG D Y++ FYK +W+II + V+ FF KG L +
Sbjct: 96 LTREVSSEEIKTVLFSMPKDKSPGPDGYTSEFYKATWDIIGQEFTLPVQSFFQKGFLPKG 155
Query: 631 IECTFITLFPKTACPIIVKEYRPIACCSALFKIIAKVLASRLQIIIALVTSESQSWIIPG 810
I + L PK +++YRPI+CC+ L+K+I+K++A+RL++++ +E+QS +
Sbjct: 156 INSIILALIPKKLAAKEMRDYRPISCCNVLYKVISKIIANRLKLLLPRFIAENQSAFVKD 215
Query: 811 RKIANNIILVTELVKAYSQKHIFPRCMVKIDLQKAYDSVGWVYLKQILEALCFPVKFVEW 990
R + N++L TELVK Y + I RC +KID+ KA+DSV W +L L A+ F F+ W
Sbjct: 216 RLLIENLLLATELVKDYHKDSISARCAIKIDISKAFDSVQWSFLTNTLVAMNFSPTFIHW 275
Query: 991 HMECIYTVNHSITINEESTPPLI*CS*GT*TRETHFPFLVFHCHGYLSRCLVELRVTKNF 1170
CI T + S+ +N + G + P+L C LS+ L + + F
Sbjct: 276 INLCITTASFSVQVNGDLV-GYFQSKRGLRQGCSLSPYLFVICMDVLSKMLDKAAGVRKF 334
Query: 1171 KFYPKCARFEITHLCFADDLLLFARGDLASVQ-TLPVFPQVFK 1296
F+PKC R +THL FADDL++ + G S++ L VF + K
Sbjct: 335 GFHPKCQRLGLTHLSFADDLMVLSDGKTRSIEGILEVFDEFCK 377
Score = 118 bits (296), Expect = 7e-24
Identities = 73/223 (32%), Positives = 121/223 (54%), Gaps = 10/223 (4%)
Frame = +2
Query: 1058 FDAAKGLRQGKPISPFLFSIAMDTSVDVLLN*GLPKILNSIPNVLDLK*HTSA--LLMIY 1231
F + +GLRQG +SP+LF I MD L K+L+ V H L + +
Sbjct: 297 FQSKRGLRQGCSLSPYLFVICMDV---------LSKMLDKAAGVRKFGFHPKCQRLGLTH 347
Query: 1232 YFLQEEI*LLCK--------LYQFFLKFSKASGLQANIGKSSIYFGGVADATKATIFQHL 1387
+++ +L + + F +F K SGL+ ++ KS++Y GV+ K I
Sbjct: 348 LSFADDLMVLSDGKTRSIEGILEVFDEFCKRSGLRISLEKSTLYMAGVSPIIKQEIAAKF 407
Query: 1388 GFSLGELPFKYLGIPLSTKKLTILQWTPLIDKIVARISSLTAKKLSYAGRVQLVQLVLFG 1567
F +G+LP +YLG+PL TK+LT ++PL+++I RI++ T + S+AGR L++ VL+
Sbjct: 408 LFDVGQLPVRYLGLPLVTKRLTSADYSPLLEQIKKRIATWTFRFFSFAGRFNLIKSVLWS 467
Query: 1568 IQAYWS*LFVIPSKELKFIDAYCRSYVWSGINTITKRALIA*D 1696
I +W F +P + ++ ID C S++WSG + +A I+ D
Sbjct: 468 ICNFWLAAFRLPRQCIREIDKLCSSFLWSGSEMSSHKAKISWD 510
>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
72.31) [Arabidopsis thaliana]
Length = 928
Score = 191 bits (485), Expect = 8e-46
Identities = 101/276 (36%), Positives = 159/276 (57%), Gaps = 5/276 (1%)
Frame = +1
Query: 451 LCKKVSDEEIYEALQSIGDDKVPGVDEYSAHFYKKSWNIIKGDLMAVVRDFFYKGKLYRP 630
L VS EEI++ + S+ +DK PG D Y+A FYK +WNII + + ++ FF KG L +
Sbjct: 337 LTNHVSAEEIHKVVFSMPNDKSPGPDGYTAEFYKGAWNIIGAEFILAIQSFFAKGFLPKG 396
Query: 631 IECTFITLFPKTACPIIVKEYRPIACCSALFKIIAKVLASRLQIIIALVTSESQSWIIPG 810
I T + L PK +K+YRPI+CC+ L+K+I+K++A+RL++++ +QS +
Sbjct: 397 INSTILALIPKKKEAKEMKDYRPISCCNVLYKVISKIIANRLKLVLPKFIVGNQSAFVKD 456
Query: 811 RKIANNIILVTELVKAYSQKHIFPRCMVKIDLQKAYDSVGWVYLKQILEALCFPVKFVEW 990
R + N++L TE+VK Y + + RC +KID+ KA+DSV W +L +LEA+ FP +F W
Sbjct: 457 RLLIENVLLATEIVKDYHKDSVSSRCALKIDISKAFDSVQWKFLINVLEAMNFPPEFTHW 516
Query: 991 HMECIYTVNHSITINEESTPPLI*CS*GT*TRETH-----FPFLVFHCHGYLSRCLVELR 1155
CI T + S+ +N E + RE P+L LS+ L +
Sbjct: 517 ITLCITTASFSVQVNGELAGVF------SSARELRQGCSLSPYLFVISMDVLSKMLDKAV 570
Query: 1156 VTKNFKFYPKCARFEITHLCFADDLLLFARGDLASV 1263
+ F ++PKC +THL FADDL++ + G + S+
Sbjct: 571 GARQFGYHPKCRAIGLTHLSFADDLMILSDGKVRSI 606
Score = 110 bits (274), Expect = 2e-21
Identities = 66/221 (29%), Positives = 118/221 (53%), Gaps = 10/221 (4%)
Frame = +2
Query: 1058 FDAAKGLRQGKPISPFLFSIAMDTSVDVLLN*GLPKILNSIPNVLDLK*HTS--ALLMIY 1231
F +A+ LRQG +SP+LF I+MD L K+L+ H A+ + +
Sbjct: 538 FSSARELRQGCSLSPYLFVISMDV---------LSKMLDKAVGARQFGYHPKCRAIGLTH 588
Query: 1232 YFLQEEI*LLCK--------LYQFFLKFSKASGLQANIGKSSIYFGGVADATKATIFQHL 1387
+++ +L + + +F+K SGL+ ++ KS++Y GV + I Q
Sbjct: 589 LSFADDLMILSDGKVRSIDGIVKVLYEFAKWSGLKISMEKSTMYLAGVQASVYQEIVQKF 648
Query: 1388 GFSLGELPFKYLGIPLSTKKLTILQWTPLIDKIVARISSLTAKKLSYAGRVQLVQLVLFG 1567
F +G+LP +YLG+PL +K+LT PLI+++ +I + T++ LS+AGR+ L+ L+
Sbjct: 649 SFDVGKLPVRYLGLPLVSKRLTASDCLPLIEQLRKKIEAWTSRFLSFAGRLNLISSTLWS 708
Query: 1568 IQAYWS*LFVIPSKELKFIDAYCRSYVWSGINTITKRALIA 1690
I +W F +P ++ ID C +++WSG + +A ++
Sbjct: 709 ICNFWMAAFRLPRACIREIDKLCSAFLWSGTELSSNKAKVS 749
>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
thaliana]
Length = 1223
Score = 190 bits (482), Expect = 2e-45
Identities = 106/294 (36%), Positives = 165/294 (56%), Gaps = 1/294 (0%)
Frame = +1
Query: 430 SHAHGIELCKKVSDEEIYEALQSIGDDKVPGVDEYSAHFYKKSWNIIKGDLMAVVRDFFY 609
S A L + V+ EEI + L + DK PG D Y++ F+K +W II + V+ FF
Sbjct: 442 SDADQQSLIRPVTAEEIRKVLFRMPSDKSPGPDGYTSEFFKATWEIIGDEFTLAVQSFFT 501
Query: 610 KGKLYRPIECTFITLFPKTACPIIVKEYRPIACCSALFKIIAKVLASRLQIIIALVTSES 789
KG L + I T + L PK +K+YRPI+CC+ L+K+I+K++A+RL++++ + +
Sbjct: 502 KGFLPKGINSTILALIPKKTEAREMKDYRPISCCNVLYKVISKIIANRLKLVLPKFIAGN 561
Query: 790 QSWIIPGRKIANNIILVTELVKAYSQKHIFPRCMVKIDLQKAYDSVGWVYLKQILEALCF 969
QS + R + N++L TELVK Y + I RC +KID+ KA+DSV W +L + L F
Sbjct: 562 QSAFVKDRLLIENLLLATELVKDYHKDTISTRCAIKIDISKAFDSVQWPFLINVFTILGF 621
Query: 970 PVKFVEWHMECIYTVNHSITINEESTPPLI*CS*GT*TRETHFPFLVFHCHGYLSRCLVE 1149
P +F+ W CI T + S+ +N E S G P+L C LS+ L +
Sbjct: 622 PREFIHWINICITTASFSVQVNGE-LAGYFQSSRGLRQGCALSPYLFVICMDVLSKMLDK 680
Query: 1150 LRVTKNFKFYPKCARFEITHLCFADDLLLFARGDLASVQ-TLPVFPQVFKGFWS 1308
++F ++PKC +THL FADDL++ + G + S++ + VF + K WS
Sbjct: 681 AAAARHFGYHPKCKTMGLTHLSFADDLMVLSDGKIRSIERIIKVFDEFAK--WS 732
Score = 117 bits (294), Expect = 1e-23
Identities = 67/212 (31%), Positives = 118/212 (55%), Gaps = 1/212 (0%)
Frame = +2
Query: 1058 FDAAKGLRQGKPISPFLFSIAMDTSVDVLLN*GLPKILNSIPNVLDLK*-HTSALLMIYY 1234
F +++GLRQG +SP+LF I MD +L + P + H S +
Sbjct: 650 FQSSRGLRQGCALSPYLFVICMDVLSKMLDKAAAARHFGYHPKCKTMGLTHLSFADDLMV 709
Query: 1235 FLQEEI*LLCKLYQFFLKFSKASGLQANIGKSSIYFGGVADATKATIFQHLGFSLGELPF 1414
+I + ++ + F +F+K SGL+ ++ KS++Y G++ + + FS G+LP
Sbjct: 710 LSDGKIRSIERIIKVFDEFAKWSGLRISLEKSTVYLAGLSATARNEVADRFPFSSGQLPV 769
Query: 1415 KYLGIPLSTKKLTILQWTPLIDKIVARISSLTAKKLSYAGRVQLVQLVLFGIQAYWS*LF 1594
+YLG+PL TK+L+ PL++++ RI S T++ LSYAGR+ L+ VL+ I +W F
Sbjct: 770 RYLGLPLITKRLSTTDCLPLLEQVRKRIGSWTSRFLSYAGRLNLISSVLWSICNFWLAAF 829
Query: 1595 VIPSKELKFIDAYCRSYVWSGINTITKRALIA 1690
+P K ++ ++ C +++WSG + +A I+
Sbjct: 830 RLPRKCIRELEKMCSAFLWSGTEMNSNKAKIS 861
>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
thaliana]
Length = 1072
Score = 189 bits (481), Expect = 2e-45
Identities = 104/313 (33%), Positives = 176/313 (56%)
Frame = +1
Query: 325 RMIGMLLSVYGLEHKTSCISLTQRNINIMKNEPVLSHAHGIELCKKVSDEEIYEALQSIG 504
R++G + S + +E + + LT R S EL K +D+EI A +S+
Sbjct: 271 RLLGSIESPFSMEQEDMNLLLTYR----------CSQDQCSELEKSFTDDEIKAAFKSLP 320
Query: 505 DDKVPGVDEYSAHFYKKSWNIIKGDLMAVVRDFFYKGKLYRPIECTFITLFPKTACPIIV 684
+K G D YS F++ +W+II +++A + +FF G+L + T + L PKT+ +
Sbjct: 321 RNKTSGPDGYSVEFFRDTWSIIGPEVLAAIHEFFDSGQLLKQWNATTLVLIPKTSNACTI 380
Query: 685 KEYRPIACCSALFKIIAKVLASRLQIIIALVTSESQSWIIPGRKIANNIILVTELVKAYS 864
E+RPI+C + L+K+I+K+L SRLQ +++ V SQS +PGR +A N++L TE+V Y+
Sbjct: 381 SEFRPISCLNTLYKVISKLLTSRLQGLLSAVIGHSQSAFLPGRSLAENVLLATEMVHGYN 440
Query: 865 QKHIFPRCMVKIDLQKAYDSVGWVYLKQILEALCFPVKFVEWHMECIYTVNHSITINEES 1044
+ +I PR M+K+DL+KA+DSV W ++ L AL P +++ W +CI T + +I++N +
Sbjct: 441 RLNISPRGMLKVDLKKAFDSVKWEFVTAALRALAIPERYINWIHQCITTPSFTISVN-GA 499
Query: 1045 TPPLI*CS*GT*TRETHFPFLVFHCHGYLSRCLVELRVTKNFKFYPKCARFEITHLCFAD 1224
T + G + P+L S+ L + ++PK I+HL FAD
Sbjct: 500 TGGFFRSTKGLRQGDPLSPYLFVLAMEVFSKLLYSRYDSGYIHYHPKAGDLSISHLMFAD 559
Query: 1225 DLLLFARGDLASV 1263
D+++F G +S+
Sbjct: 560 DVMIFFDGGSSSM 572
Score = 111 bits (277), Expect = 1e-21
Identities = 66/201 (32%), Positives = 108/201 (53%), Gaps = 1/201 (0%)
Frame = +2
Query: 1058 FDAAKGLRQGKPISPFLFSIAMDTSVDVLLN*GLPKILNSIPNVLDLK*-HTSALLMIYY 1234
F + KGLRQG P+SP+LF +AM+ +L + ++ P DL H +
Sbjct: 504 FRSTKGLRQGDPLSPYLFVLAMEVFSKLLYSRYDSGYIHYHPKAGDLSISHLMFADDVMI 563
Query: 1235 FLQEEI*LLCKLYQFFLKFSKASGLQANIGKSSIYFGGVADATKATIFQHLGFSLGELPF 1414
F + + + F+ SGL+ N KS ++ G+ D ++ GF G P
Sbjct: 564 FFDGGSSSMHGICETLDDFADWSGLKVNKDKSQLFQAGL-DLSERITSAAYGFPAGTFPI 622
Query: 1415 KYLGIPLSTKKLTILQWTPLIDKIVARISSLTAKKLSYAGRVQLVQLVLFGIQAYWS*LF 1594
+YLG+PL +KL I + PL++K+ AR+ S +K LS+AGR QL+ V+FG+ +W F
Sbjct: 623 RYLGLPLMCRKLRIADYGPLLEKLSARLRSWVSKALSFAGRTQLISSVIFGLINFWMSTF 682
Query: 1595 VIPSKELKFIDAYCRSYVWSG 1657
++P +K I++ C ++W+G
Sbjct: 683 LLPKGCIKKIESLCSKFLWAG 703
>dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
Length = 1072
Score = 189 bits (481), Expect = 2e-45
Identities = 104/313 (33%), Positives = 176/313 (56%)
Frame = +1
Query: 325 RMIGMLLSVYGLEHKTSCISLTQRNINIMKNEPVLSHAHGIELCKKVSDEEIYEALQSIG 504
R++G + S + +E + + LT R S EL K +D+EI A +S+
Sbjct: 271 RLLGSIESPFSMEQEDMNLLLTYR----------CSQDQCSELEKSFTDDEIKAAFKSLP 320
Query: 505 DDKVPGVDEYSAHFYKKSWNIIKGDLMAVVRDFFYKGKLYRPIECTFITLFPKTACPIIV 684
+K G D YS F++ +W+II +++A + +FF G+L + T + L PKT+ +
Sbjct: 321 RNKTSGPDGYSVEFFRDTWSIIGPEVLAAIHEFFDSGQLLKQWNATTLVLIPKTSNACTI 380
Query: 685 KEYRPIACCSALFKIIAKVLASRLQIIIALVTSESQSWIIPGRKIANNIILVTELVKAYS 864
E+RPI+C + L+K+I+K+L SRLQ +++ V SQS +PGR +A N++L TE+V Y+
Sbjct: 381 SEFRPISCLNTLYKVISKLLTSRLQGLLSAVIGHSQSAFLPGRSLAENVLLATEMVHGYN 440
Query: 865 QKHIFPRCMVKIDLQKAYDSVGWVYLKQILEALCFPVKFVEWHMECIYTVNHSITINEES 1044
+ +I PR M+K+DL+KA+DSV W ++ L AL P +++ W +CI T + +I++N +
Sbjct: 441 RLNISPRGMLKVDLKKAFDSVKWEFVTAALRALAIPERYINWIHQCITTPSFTISVN-GA 499
Query: 1045 TPPLI*CS*GT*TRETHFPFLVFHCHGYLSRCLVELRVTKNFKFYPKCARFEITHLCFAD 1224
T + G + P+L S+ L + ++PK I+HL FAD
Sbjct: 500 TGGFFRSTKGLRQGDPLSPYLFVLAMEVFSKLLYSRYDSGYIHYHPKAGDLSISHLMFAD 559
Query: 1225 DLLLFARGDLASV 1263
D+++F G +S+
Sbjct: 560 DVMIFFDGGSSSM 572
Score = 111 bits (277), Expect = 1e-21
Identities = 66/201 (32%), Positives = 108/201 (53%), Gaps = 1/201 (0%)
Frame = +2
Query: 1058 FDAAKGLRQGKPISPFLFSIAMDTSVDVLLN*GLPKILNSIPNVLDLK*-HTSALLMIYY 1234
F + KGLRQG P+SP+LF +AM+ +L + ++ P DL H +
Sbjct: 504 FRSTKGLRQGDPLSPYLFVLAMEVFSKLLYSRYDSGYIHYHPKAGDLSISHLMFADDVMI 563
Query: 1235 FLQEEI*LLCKLYQFFLKFSKASGLQANIGKSSIYFGGVADATKATIFQHLGFSLGELPF 1414
F + + + F+ SGL+ N KS ++ G+ D ++ GF G P
Sbjct: 564 FFDGGSSSMHGICETLDDFADWSGLKVNKDKSQLFQAGL-DLSERITSAAYGFPAGTFPI 622
Query: 1415 KYLGIPLSTKKLTILQWTPLIDKIVARISSLTAKKLSYAGRVQLVQLVLFGIQAYWS*LF 1594
+YLG+PL +KL I + PL++K+ AR+ S +K LS+AGR QL+ V+FG+ +W F
Sbjct: 623 RYLGLPLMCRKLRIADYGPLLEKLSARLRSWVSKALSFAGRTQLISSVIFGLINFWMSTF 682
Query: 1595 VIPSKELKFIDAYCRSYVWSG 1657
++P +K I++ C ++W+G
Sbjct: 683 LLPKGCIKKIESLCSKFLWAG 703
>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1216
Score = 188 bits (478), Expect = 5e-45
Identities = 101/271 (37%), Positives = 156/271 (57%)
Frame = +1
Query: 451 LCKKVSDEEIYEALQSIGDDKVPGVDEYSAHFYKKSWNIIKGDLMAVVRDFFYKGKLYRP 630
L + V+ EEI + + S+ DK PG D Y++ FYK SW II +++ ++ FF KG L +
Sbjct: 170 LTRVVTGEEIKKVIFSMPKDKSPGPDGYTSEFYKASWEIIGDEVIIAIQSFFAKGFLPKG 229
Query: 631 IECTFITLFPKTACPIIVKEYRPIACCSALFKIIAKVLASRLQIIIALVTSESQSWIIPG 810
+ T + L PK +K+YRPI+CC+ L+K I+K+LA+RL+ I+ +QS +
Sbjct: 230 VNSTILALIPKKKEAREIKDYRPISCCNVLYKAISKILANRLKRILPKFIVGNQSAFVKD 289
Query: 811 RKIANNIILVTELVKAYSQKHIFPRCMVKIDLQKAYDSVGWVYLKQILEALCFPVKFVEW 990
R + N++L TELVK Y + I RC +KID+ KA+DS+ W +L +L A+ FP +F+ W
Sbjct: 290 RLLIENVLLATELVKDYHKDSISTRCAMKIDISKAFDSLQWSFLTHVLAAMNFPGEFIHW 349
Query: 991 HMECIYTVNHSITINEESTPPLI*CS*GT*TRETHFPFLVFHCHGYLSRCLVELRVTKNF 1170
C+ T + SI +N E + G + P+L LSR L + + F
Sbjct: 350 ISLCMSTASFSIQVNGE-LAGYFRSARGLRQGCSLSPYLFVISMDVLSRMLDKAAGAREF 408
Query: 1171 KFYPKCARFEITHLCFADDLLLFARGDLASV 1263
++P+C +THLCFADDL++ G + SV
Sbjct: 409 GYHPRCKTLGLTHLCFADDLMILTDGKIRSV 439
Score = 108 bits (271), Expect = 5e-21
Identities = 67/224 (29%), Positives = 120/224 (53%), Gaps = 10/224 (4%)
Frame = +2
Query: 1058 FDAAKGLRQGKPISPFLFSIAMDTSVDVLLN*GLPKILNSIPNVLDLK*HT--SALLMIY 1231
F +A+GLRQG +SP+LF I+MD L ++L+ + H L + +
Sbjct: 371 FRSARGLRQGCSLSPYLFVISMDV---------LSRMLDKAAGAREFGYHPRCKTLGLTH 421
Query: 1232 YFLQEEI*LLCK--------LYQFFLKFSKASGLQANIGKSSIYFGGVADATKATIFQHL 1387
+++ +L + + +F+ GL+ + K+++Y GV+D ++ +
Sbjct: 422 LCFADDLMILTDGKIRSVDGIVKVLNQFAAKLGLKICMEKTTLYLAGVSDHSRQLMSSRY 481
Query: 1388 GFSLGELPFKYLGIPLSTKKLTILQWTPLIDKIVARISSLTAKKLSYAGRVQLVQLVLFG 1567
F +G+LP +YLG+PL TK+LT ++PLID+I RI T++ LS+AGR+ L+ VL+
Sbjct: 482 SFGVGKLPVRYLGLPLVTKRLTTSDYSPLIDQIRRRIGMWTSRYLSFAGRLSLINSVLWS 541
Query: 1568 IQAYWS*LFVIPSKELKFIDAYCRSYVWSGINTITKRALIA*DK 1699
I +W F +P + + I+ + +WSG K+A ++ D+
Sbjct: 542 ITNFWMNAFRLPRECINEINRISSALLWSGPELNPKKAKVSWDE 585
>gb|ABA99600.2| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1432
Score = 122 bits (306), Expect(2) = 9e-45
Identities = 71/197 (36%), Positives = 111/197 (56%), Gaps = 2/197 (1%)
Frame = +1
Query: 466 SDEEIYEALQSIGDDKVPGVDEYSAHFYKKSWNIIKGDLMAVVRDFFY-KGKLYRPIECT 642
S+ E++EA++S+ ++K PG D Y+A FY+K W+IIKGD+M F + +
Sbjct: 710 SENEVWEAIKSLPNEKSPGPDGYTALFYQKCWDIIKGDIMKAFEKFCRGNSQNLEMLNTA 769
Query: 643 FITLFPKTACPIIVKEYRPIACCSALFKIIAKVLASRLQIIIALVTSESQSWIIPGRKIA 822
ITL PK P ++K+YRPI+ + K+ AKV+A RL + + +Q+ I GR I
Sbjct: 770 VITLIPKKDSPTLLKDYRPISLIHSFAKLAAKVMAQRLAPRMNELVPYTQNAFIRGRSIH 829
Query: 823 NNIILVTELVKAYSQKHIFPRCMVKIDLQKAYDSVGWVYLKQILEALCFPVKFVEWHMEC 1002
N I V LV+ Y ++H ++K+D+ KA+D+V W +L +L+ F K+ W +
Sbjct: 830 ENFIFVKGLVQQYHKQH-KEMILLKLDISKAFDTVSWCFLLDMLKWRGFGAKWRLWLVSL 888
Query: 1003 IYTVNHSITIN-EESTP 1050
T +I IN ES P
Sbjct: 889 FLTAETNILINGNESNP 905
Score = 87.0 bits (214), Expect(2) = 9e-45
Identities = 59/203 (29%), Positives = 101/203 (49%), Gaps = 3/203 (1%)
Frame = +2
Query: 1058 FDAAKGLRQGKPISPFLFSIAMDTSVDVLLN*GLPKILNS-IPN--VLDLK*HTSALLMI 1228
F A+GLRQG P+SP LF +AMD V+ +L+ P V + + ++
Sbjct: 906 FKPARGLRQGDPLSPLLFVLAMDALQAVVAQAKASGLLSEPAPRRPVPSISIYADDAVLF 965
Query: 1229 YYFLQEEI*LLCKLYQFFLKFSKASGLQANIGKSSIYFGGVADATKATIFQHLGFSLGEL 1408
+ Q+E ++ + Q F ASGL N K++I + + L ++
Sbjct: 966 FKPSQQEAKVVKAILQIF---GAASGLMTNYNKTAITPIQCSQEQLQVVADELQCNIQLF 1022
Query: 1409 PFKYLGIPLSTKKLTILQWTPLIDKIVARISSLTAKKLSYAGRVQLVQLVLFGIQAYWS* 1588
P YLG+PLST+K T + P++DK+ +++ K LS GR+ L++ VL + ++
Sbjct: 1023 PIIYLGLPLSTRKPTKAEVQPILDKLANKVAGWKPKLLSPDGRLCLIKSVLMALPVHFMS 1082
Query: 1589 LFVIPSKELKFIDAYCRSYVWSG 1657
+ +P +K I+ CR ++W G
Sbjct: 1083 VLQLPKWAIKDIERKCRGFLWKG 1105
>emb|CAN62743.1| hypothetical protein VITISV_033107 [Vitis vinifera]
Length = 1168
Score = 127 bits (320), Expect(2) = 2e-44
Identities = 65/201 (32%), Positives = 116/201 (57%), Gaps = 2/201 (0%)
Frame = +1
Query: 439 HGIELCKKVS--DEEIYEALQSIGDDKVPGVDEYSAHFYKKSWNIIKGDLMAVVRDFFYK 612
HG C +V + EI+ AL + DK PG D +S F++ +W K ++M + ++F
Sbjct: 381 HGAAECIEVPFVENEIHSALMEMNGDKAPGPDGFSVAFWQNAWAFAKEEIMEMFKEFHEH 440
Query: 613 GKLYRPIECTFITLFPKTACPIIVKEYRPIACCSALFKIIAKVLASRLQIIIALVTSESQ 792
R + TF+ L PK + + ++RPI+ L+K++AKVLA+RL+ +I V S +Q
Sbjct: 441 STFVRSLNNTFLVLIPKKSGVEDLGDFRPISLLGGLYKLLAKVLANRLKRVIGKVVSSAQ 500
Query: 793 SWIIPGRKIANNIILVTELVKAYSQKHIFPRCMVKIDLQKAYDSVGWVYLKQILEALCFP 972
+ + GR+I + ++ E++ ++ QK + K+D++KAYDS+ W +L ++L+ + F
Sbjct: 501 NAFVMGRQILDASLIANEVIDSW-QKRKEKGLICKLDIEKAYDSINWNFLMKVLQKMGFG 559
Query: 973 VKFVEWHMECIYTVNHSITIN 1035
K+V W C+ + SI +N
Sbjct: 560 NKWVGWMWSCVSSAKFSILVN 580
Score = 80.5 bits (197), Expect(2) = 2e-44
Identities = 59/221 (26%), Positives = 106/221 (47%), Gaps = 8/221 (3%)
Frame = +2
Query: 1058 FDAAKGLRQGKPISPFLFSIAMDTSVDVLLN*GLPKILNSIPNVLDLK*HTSALLMIYYF 1237
F +++GLRQG P+SP+LF + M+ +DVL+ + S N+ D +++L + + F
Sbjct: 587 FPSSRGLRQGDPLSPYLFVMGMEI-LDVLIRRAVEGGYLSGCNIRDGS--STSLHISHLF 643
Query: 1238 LQEEI*LLCK--------LYQFFLKFSKASGLQANIGKSSIYFGGVADATKATIFQHLGF 1393
++ + C+ L F ASGL+ N+ KS I G + + + LG
Sbjct: 644 FADDTIVFCEANKDQVSHLSWILFWFEAASGLRMNLAKSEIIPVGEVEEIQE-LAAELGC 702
Query: 1394 SLGELPFKYLGIPLSTKKLTILQWTPLIDKIVARISSLTAKKLSYAGRVQLVQLVLFGIQ 1573
+G LP YLG+PL W + +++ R++ + +S GR+ L++ L +
Sbjct: 703 RVGSLPSHYLGLPLGVPNRASSMWDGVEERVRRRLALWKRQYISKGGRITLIKSALASMP 762
Query: 1574 AYWS*LFVIPSKELKFIDAYCRSYVWSGINTITKRALIA*D 1696
Y +F +P + ++ R ++W G N K L+ D
Sbjct: 763 IYQMSIFRMPKSVARRVEKIQRDFLWGGGNLGGKIHLVKWD 803
>gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thaliana]
gi|20197043|gb|AAM14892.1| putative reverse transcriptase
[Arabidopsis thaliana]
Length = 1412
Score = 185 bits (469), Expect = 6e-44
Identities = 101/300 (33%), Positives = 164/300 (54%)
Frame = +1
Query: 451 LCKKVSDEEIYEALQSIGDDKVPGVDEYSAHFYKKSWNIIKGDLMAVVRDFFYKGKLYRP 630
L ++++ E+ + SI +K PG D Y+ F++++W++I ++ ++ FF G L +
Sbjct: 715 LVAEITEAEVMKVFFSIPLNKSPGPDGYTVEFFRETWSVIGQEVTMAIKSFFTYGFLPKG 774
Query: 631 IECTFITLFPKTACPIIVKEYRPIACCSALFKIIAKVLASRLQIIIALVTSESQSWIIPG 810
+ T + L PK +K+YRPI+CC+ L+K I+K+LA+RL+ ++ + +QS I
Sbjct: 775 LNSTILALIPKRTYAKEMKDYRPISCCNVLYKAISKLLANRLKCLLPEFIAPNQSAFISD 834
Query: 811 RKIANNIILVTELVKAYSQKHIFPRCMVKIDLQKAYDSVGWVYLKQILEALCFPVKFVEW 990
R + N++L +ELVK Y + + PRC +KIDL KA+DSV W +L L AL P KF+ W
Sbjct: 835 RLLMENLLLASELVKDYHKDGLSPRCAMKIDLSKAFDSVQWPFLLNTLAALDIPEKFIHW 894
Query: 991 HMECIYTVNHSITINEESTPPLI*CS*GT*TRETHFPFLVFHCHGYLSRCLVELRVTKNF 1170
CI T + S+ +N G + P+L C LS L + V K F
Sbjct: 895 INLCISTASFSVQVN------------GLRQGCSLSPYLFVICMNVLSAMLDKGAVEKRF 942
Query: 1171 KFYPKCARFEITHLCFADDLLLFARGDLASVQTLPVFPQVFKGFWSSSKYWEKQYLLWRS 1350
++P+C +THLCFADD+++F+ G S++ + + F F + EK L S
Sbjct: 943 GYHPRCRNMGLTHLCFADDIMVFSAGSAHSLEGVLAIFKDFAAFSGLNISLEKSTLFMAS 1002
Score = 104 bits (260), Expect = 1e-19
Identities = 66/207 (31%), Positives = 107/207 (51%), Gaps = 1/207 (0%)
Frame = +2
Query: 1073 GLRQGKPISPFLFSIAMDTSVDVLLN*GLPKILNSIPNVLDLK*-HTSALLMIYYFLQEE 1249
GLRQG +SP+LF I M+ +L + K P ++ H I F
Sbjct: 910 GLRQGCSLSPYLFVICMNVLSAMLDKGAVEKRFGYHPRCRNMGLTHLCFADDIMVFSAGS 969
Query: 1250 I*LLCKLYQFFLKFSKASGLQANIGKSSIYFGGVADATKATIFQHLGFSLGELPFKYLGI 1429
L + F F+ SGL ++ KS+++ ++ T A+I F G LP +YLG+
Sbjct: 970 AHSLEGVLAIFKDFAAFSGLNISLEKSTLFMASISSETCASILARFPFDSGSLPVRYLGL 1029
Query: 1430 PLSTKKLTILQWTPLIDKIVARISSLTAKKLSYAGRVQLVQLVLFGIQAYWS*LFVIPSK 1609
PL TK++T+ PL++KI +RISS + LSYAGR+QL+ V+ + +W F +P
Sbjct: 1030 PLMTKRMTLADCLPLLEKIRSRISSWKNRFLSYAGRLQLLNSVISSLTKFWISAFRLPRA 1089
Query: 1610 ELKFIDAYCRSYVWSGINTITKRALIA 1690
++ I+ +++WSG + +A +A
Sbjct: 1090 CIREIEQISAAFLWSGTDLNPHKAKVA 1116
>gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana]
Length = 1161
Score = 157 bits (398), Expect = 1e-35
Identities = 88/266 (33%), Positives = 142/266 (53%)
Frame = +1
Query: 466 SDEEIYEALQSIGDDKVPGVDEYSAHFYKKSWNIIKGDLMAVVRDFFYKGKLYRPIECTF 645
S+EEI + L S+ +K PG D + F+ ++W I+K ++A +R+FF G L R T
Sbjct: 491 SEEEITQVLFSMPRNKAPGPDGFPVEFFIEAWAIVKSSVVAAIREFFISGNLPRGFNATA 550
Query: 646 ITLFPKTACPIIVKEYRPIACCSALFKIIAKVLASRLQIIIALVTSESQSWIIPGRKIAN 825
ITL PK + ++RP+ACC+ ++K+I ++++ RL++ I +Q I GR +
Sbjct: 551 ITLIPKVTGADRLTQFRPVACCTTIYKVITRIISRRLKLFIDQAVQANQVGFIKGRLLCE 610
Query: 826 NIILVTELVKAYSQKHIFPRCMVKIDLQKAYDSVGWVYLKQILEALCFPVKFVEWHMECI 1005
N++L +ELV + R +++D+ KAYD+V W +L IL+AL P+ F+ W CI
Sbjct: 611 NVLLASELVDNFEADGETTRGCLQVDISKAYDNVNWEFLINILKALDLPLVFIHWIWVCI 670
Query: 1006 YTVNHSITINEESTPPLI*CS*GT*TRETHFPFLVFHCHGYLSRCLVELRVTKNFKFYPK 1185
+ ++SI N E G + L LS+ L + F +P
Sbjct: 671 SSASYSIAFNGELI-GFFQGKKGIRQGDPMSSHLFVLVMDVLSKSLDLGALNGLFNLHPN 729
Query: 1186 CARFEITHLCFADDLLLFARGDLASV 1263
C ITHL FADD+L+F+ G +S+
Sbjct: 730 CLAPIITHLSFADDVLVFSDGAASSI 755
Score = 84.7 bits (208), Expect = 1e-13
Identities = 55/168 (32%), Positives = 85/168 (50%), Gaps = 1/168 (0%)
Frame = +2
Query: 1058 FDAAKGLRQGKPISPFLFSIAMDTSVDVLLN*GLPKILNSIPNVL-DLK*HTSALLMIYY 1234
F KG+RQG P+S LF + MD L L + N PN L + H S +
Sbjct: 687 FQGKKGIRQGDPMSSHLFVLVMDVLSKSLDLGALNGLFNLHPNCLAPIITHLSFADDVLV 746
Query: 1235 FLQEEI*LLCKLYQFFLKFSKASGLQANIGKSSIYFGGVADATKATIFQHLGFSLGELPF 1414
F + + F + SGL N K+ + G A ++ +LG + G LP
Sbjct: 747 FSDGAASSIAGILTILDDFRQGSGLGINREKTELLLDGGNFARNRSLADNLGITHGSLPV 806
Query: 1415 KYLGIPLSTKKLTILQWTPLIDKIVARISSLTAKKLSYAGRVQLVQLV 1558
+YLG+PL ++K+ + PL+D+I +R +S TA+ LS+AGR+QL+ +
Sbjct: 807 RYLGVPLMSQKMRRQDYQPLVDRINSRFTSWTARHLSFAGRLQLLNWI 854
>dbj|BAF00918.1| putative reverse transcriptase [Arabidopsis thaliana]
Length = 910
Score = 157 bits (398), Expect = 1e-35
Identities = 88/266 (33%), Positives = 142/266 (53%)
Frame = +1
Query: 466 SDEEIYEALQSIGDDKVPGVDEYSAHFYKKSWNIIKGDLMAVVRDFFYKGKLYRPIECTF 645
S+EEI + L S+ +K PG D + F+ ++W I+K ++A +R+FF G L R T
Sbjct: 448 SEEEITQVLFSMPRNKAPGPDGFPVEFFIEAWAIVKSSVVAAIREFFISGNLPRGFNATA 507
Query: 646 ITLFPKTACPIIVKEYRPIACCSALFKIIAKVLASRLQIIIALVTSESQSWIIPGRKIAN 825
ITL PK + ++RP+ACC+ ++K+I ++++ RL++ I +Q I GR +
Sbjct: 508 ITLIPKVTGADRLTQFRPVACCTTIYKVITRIISRRLKLFIDQAVQANQVGFIKGRLLCE 567
Query: 826 NIILVTELVKAYSQKHIFPRCMVKIDLQKAYDSVGWVYLKQILEALCFPVKFVEWHMECI 1005
N++L +ELV + R +++D+ KAYD+V W +L IL+AL P+ F+ W CI
Sbjct: 568 NVLLASELVDNFEADGETTRGCLQVDISKAYDNVNWEFLINILKALDLPLVFIHWIWVCI 627
Query: 1006 YTVNHSITINEESTPPLI*CS*GT*TRETHFPFLVFHCHGYLSRCLVELRVTKNFKFYPK 1185
+ ++SI N E G + L LS+ L + F +P
Sbjct: 628 SSASYSIAFNGELI-GFFQGKKGIRQGDPMSSHLFVLVMDVLSKSLDLGALNGLFNLHPN 686
Query: 1186 CARFEITHLCFADDLLLFARGDLASV 1263
C ITHL FADD+L+F+ G +S+
Sbjct: 687 CLAPIITHLSFADDVLVFSDGAASSI 712
Score = 110 bits (276), Expect = 1e-21
Identities = 66/212 (31%), Positives = 112/212 (52%), Gaps = 1/212 (0%)
Frame = +2
Query: 1058 FDAAKGLRQGKPISPFLFSIAMDTSVDVLLN*GLPKILNSIPNVL-DLK*HTSALLMIYY 1234
F KG+RQG P+S LF + MD L L + N PN L + H S +
Sbjct: 644 FQGKKGIRQGDPMSSHLFVLVMDVLSKSLDLGALNGLFNLHPNCLAPIITHLSFADDVLV 703
Query: 1235 FLQEEI*LLCKLYQFFLKFSKASGLQANIGKSSIYFGGVADATKATIFQHLGFSLGELPF 1414
F + + F + SGL N K+ + G A ++ +LG + G LP
Sbjct: 704 FSDGAASSIAGILTILDDFRQGSGLGINREKTELLLDGGNFARNRSLADNLGITHGSLPV 763
Query: 1415 KYLGIPLSTKKLTILQWTPLIDKIVARISSLTAKKLSYAGRVQLVQLVLFGIQAYWS*LF 1594
+YLG+PL ++K+ + PL+D+I +R +S TA+ LS+AGR+QL++ V++ +W+ +F
Sbjct: 764 RYLGVPLMSQKMRRQDYQPLVDRINSRFTSWTARHLSFAGRLQLLKSVIYSTINFWASVF 823
Query: 1595 VIPSKELKFIDAYCRSYVWSGINTITKRALIA 1690
+ P++ L+ ++ C +++WSG + A I+
Sbjct: 824 IFPNQCLQKLEQMCNAFLWSGAPNSARGAKIS 855