BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atropa21_contig00032799
         (790 letters)

Database: nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004239522.1| PREDICTED: uncharacterized protein LOC101244...   119   2e-33
gb|ADU56212.1| gag-pol polyprotein [Solanum lycopersicum]             125   2e-26
ref|XP_004248966.1| PREDICTED: uncharacterized protein LOC101245...   122   2e-25
gb|ABI34339.1| Polyprotein, 3'-partial, putative [Solanum demissum]   114   3e-23
gb|AAT66771.2| Putative polyprotein, identical [Solanum demissum]     106   8e-21
ref|XP_004234875.1| PREDICTED: uncharacterized protein LOC101266...    97   9e-19
ref|XP_006340520.1| PREDICTED: uncharacterized protein LOC102599...    99   1e-18
ref|XP_004239560.1| PREDICTED: uncharacterized protein LOC101255...    70   8e-17
ref|XP_004229115.1| PREDICTED: uncharacterized protein LOC101247...    84   4e-14
gb|AAV43973.1| hypothetical protein [Oryza sativa Japonica Group]      53   7e-14
gb|AAP43918.1| integrase [Gossypium hirsutum]                          54   9e-14
gb|AAV31274.1| putative polyprotein [Oryza sativa Japonica Group...    53   2e-13
gb|ABA97872.1| retrotransposon protein, putative, Ty3-gypsy subc...    53   4e-13
gb|AEJ07934.1| Xilon1 gag-pol polyprotein [Zea mays subsp. mexic...    51   7e-13
gb|ABA98372.1| retrotransposon protein, putative, Ty3-gypsy subc...    51   7e-13
gb|AAK13085.1|AC078839_1 Similar to Sorghum bicolor 22 kDakafiri...    52   7e-13
gb|ABB47457.1| retrotransposon protein, putative, Ty3-gypsy subc...    52   7e-13
gb|AAV32171.1| putative polyprotein [Oryza sativa Japonica Group]      52   7e-13
emb|CAE02081.2| OSJNBa0074B10.9 [Oryza sativa Japonica Group]          52   9e-13
gb|AAP43917.1| integrase [Gossypium hirsutum]                          50   1e-12

>ref|XP_004239522.1| PREDICTED: uncharacterized protein LOC101244956 [Solanum
            lycopersicum]
          Length = 933

 Score =  119 bits (298), Expect(2) = 2e-33
 Identities = 76/157 (48%), Positives = 92/157 (58%), Gaps = 7/157 (4%)
 Frame = +3

Query: 339  DALIRKVESMKSLTRLIVDERPLT*EVQFLAISFVRLDILNSDRILA*VEARSYLLEKIK 518
            DA   K  SM SL  L   E PL  +VQ LA  FVRLD     ++LA +EARS +LE I+
Sbjct: 708  DASSWKAASMGSLAMLQGSEHPLAKDVQSLANRFVRLDYSEFCKVLAYMEARSSMLEHIR 767

Query: 519  VQ*YDNVKLYKIRDKVMRGEAKEAMLDSEGVS*GLRGECVF-------LVLEIXXXXXXX 677
             Q +D+  L KIRDKV++GE   ++LDSEGV   LR +C         L   I       
Sbjct: 768  AQQFDDGDLCKIRDKVLKGETNASILDSEGV---LRIKCHICVPCTSDLTRLIMEEAHRV 824

Query: 678  XLISGATKMYRDLKQHYWRGRMKRDIVEFVSQCLNCQ 788
             +  G T +YRDLKQHYW  RMKRDIV+ VS CLNCQ
Sbjct: 825  SIHLGDTNLYRDLKQHYWWCRMKRDIVDIVSHCLNCQ 861



 Score = 50.1 bits (118), Expect(2) = 2e-33
 Identities = 22/46 (47%), Positives = 34/46 (73%)
 Frame = +1

Query: 193 KVYTNHGSFQHVFSQCDLNSKHHR*MKLLKNYDMTILYHSSKINVV 330
           +V+T+H S  ++F++ DLN +  R ++LL +Y+MTILYH  K NVV
Sbjct: 661 EVFTDHRSLHYIFNKRDLNLRQWRWLELLNDYEMTILYHPGKENVV 706


>gb|ADU56212.1| gag-pol polyprotein [Solanum lycopersicum]
          Length = 624

 Score =  125 bits (314), Expect = 2e-26
 Identities = 78/172 (45%), Positives = 98/172 (56%), Gaps = 6/172 (3%)
 Frame = +3

Query: 291 YDYFVPFEQNQCGGWMDALIRKVESMKSLTRLIVDERPLT*EVQFLAISFVRLDILNSDR 470
           YD  + +   +      AL RK  SM SL  L     PL  EVQ LA   +RL++     
Sbjct: 431 YDITILYHPGKANVVAVALSRKAGSMGSLAHLQASRHPLAREVQILANDLMRLEVNEKGG 490

Query: 471 ILA*VEARSYLLEKIKVQ*YDNVKLYKIRDKVMRGEAKEAMLDSEGVS*GLRGECVFLVL 650
            LA VEARS  L+KIK + +++ KL +IRDKV+RGEAKEA +D EGV       CV  V 
Sbjct: 491 FLACVEARSSSLDKIKGKQFNDEKLIRIRDKVLRGEAKEAQIDEEGVLRIKGRVCVPRVD 550

Query: 651 EIXXXXXXXXLIS------GATKMYRDLKQHYWRGRMKRDIVEFVSQCLNCQ 788
           ++          S      GATKMYRDLKQH+W  RMKRDIV F+++C NCQ
Sbjct: 551 DLINTILTEAHSSRYSIHPGATKMYRDLKQHFWWSRMKRDIVNFIAKCPNCQ 602



 Score = 60.1 bits (144), Expect = 9e-07
 Identities = 28/46 (60%), Positives = 36/46 (78%)
 Frame = +1

Query: 193 KVYTNHGSFQHVFSQCDLNSKHHR*MKLLKNYDMTILYHSSKINVV 330
           +VYT+H S Q+VF+Q DLN +  R M+LLK+YD+TILYH  K NVV
Sbjct: 400 EVYTDHRSLQYVFTQKDLNLRQRRWMELLKDYDITILYHPGKANVV 445


>ref|XP_004248966.1| PREDICTED: uncharacterized protein LOC101245305 [Solanum
           lycopersicum]
          Length = 256

 Score =  122 bits (305), Expect = 2e-25
 Identities = 76/151 (50%), Positives = 97/151 (64%), Gaps = 10/151 (6%)
 Frame = +3

Query: 366 MKSLTRLIVDERPLT*EVQFLAISFVRLDILNSDRILA*VEARSYLLEKIKVQ*YDNVKL 545
           M SL  L VDERPL  +VQ LA SF+R DI    ++LA +EARS LLE+I+ Q +D+  L
Sbjct: 1   MGSLAMLQVDERPLARDVQSLANSFLRPDISEPGKVLAYMEARSTLLEQIRAQQFDDGDL 60

Query: 546 YKIRDKVMRGEAKEAMLDSEGVS*GLR----------GECVFLVLEIXXXXXXXXLISGA 695
           +KI  KV++GEAK A+LD+EGV   LR          G+   L++E         +   A
Sbjct: 61  FKIIYKVLKGEAKAAILDNEGV---LRIKGRICVPRTGDLTKLIME-EAHSSRYSIPPRA 116

Query: 696 TKMYRDLKQHYWRGRMKRDIVEFVSQCLNCQ 788
           TKMY DLKQ+YW  RMKRDIV+FVS+C NCQ
Sbjct: 117 TKMYHDLKQYYWWCRMKRDIVDFVSRCFNCQ 147


>gb|ABI34339.1| Polyprotein, 3'-partial, putative [Solanum demissum]
          Length = 1475

 Score =  114 bits (286), Expect = 3e-23
 Identities = 72/176 (40%), Positives = 102/176 (57%), Gaps = 10/176 (5%)
 Frame = +3

Query: 291  YDYFVPFEQNQCGGWMDALIRKVESMKSLTRLIVDERPLT*EVQFLAISFVRLDILNSDR 470
            YD  + +   +     DAL RK  SM SL  L V+ERPL  ++QFLA S VRLDI +S R
Sbjct: 1066 YDLSILYHPGKANVVADALSRKAVSMGSLAFLSVEERPLAMDIQFLANSMVRLDISDSRR 1125

Query: 471  ILA*VEARSYLLEKIKVQ*YDNVKLYKIRDKVMRGEAKEAMLDSEGVS*GLR-------- 626
            +LA +  +S LL++I+   +++  L  +RD+V+ G+  +A L  +GV   LR        
Sbjct: 1126 VLAHMGVQSSLLDRIRGCQFEDEALVALRDRVLAGDGGQASLYPDGV---LRFAGRICVP 1182

Query: 627  --GECVFLVLEIXXXXXXXXLISGATKMYRDLKQHYWRGRMKRDIVEFVSQCLNCQ 788
              G+ + L+L          +  G TKMYRDL+QHYW   M+RDI +FVS+CL CQ
Sbjct: 1183 RVGDLIQLILS-EGHESRYSIHPGTTKMYRDLRQHYWWSGMRRDIADFVSRCLCCQ 1237



 Score = 57.8 bits (138), Expect = 4e-06
 Identities = 25/46 (54%), Positives = 36/46 (78%)
 Frame = +1

Query: 193  KVYTNHGSFQHVFSQCDLNSKHHR*MKLLKNYDMTILYHSSKINVV 330
            ++YT+H S Q++ SQ DLNS+  R ++LLK+YD++ILYH  K NVV
Sbjct: 1035 EIYTDHRSLQYIMSQRDLNSRQRRWIELLKDYDLSILYHPGKANVV 1080


>gb|AAT66771.2| Putative polyprotein, identical [Solanum demissum]
          Length = 1771

 Score =  106 bits (265), Expect = 8e-21
 Identities = 68/176 (38%), Positives = 99/176 (56%), Gaps = 10/176 (5%)
 Frame = +3

Query: 291  YDYFVPFEQNQCGGWMDALIRKVESMKSLTRLIVDERPLT*EVQFLAISFVRLDILNSDR 470
            YD  + +   +     DAL RK  SM SL  L V+ERPL  ++Q LA S VRLDI +S  
Sbjct: 1222 YDLSILYHPGKANVVADALSRKAVSMGSLAFLSVEERPLALDIQSLANSMVRLDISDSRC 1281

Query: 471  ILA*VEARSYLLEKIKVQ*YDNVKLYKIRDKVMRGEAKEAMLDSEGVS*GLR-------- 626
            +LA +  +S LL++I+   +++  L  +RD+V+  +  +A LD +GV   L+        
Sbjct: 1282 VLAFMRVQSSLLDRIRGCQFEDDTLVALRDRVLADDGGQATLDPDGV---LKFAGRICVP 1338

Query: 627  --GECVFLVLEIXXXXXXXXLISGATKMYRDLKQHYWRGRMKRDIVEFVSQCLNCQ 788
              G+ + L+L          +  G  KMYRDL+QHYW   M+RDI +FVS+CL CQ
Sbjct: 1339 RVGDLIQLILS-EAHESRYSIHPGTAKMYRDLRQHYWWSGMRRDIADFVSRCLCCQ 1393



 Score = 57.8 bits (138), Expect = 4e-06
 Identities = 25/46 (54%), Positives = 36/46 (78%)
 Frame = +1

Query: 193  KVYTNHGSFQHVFSQCDLNSKHHR*MKLLKNYDMTILYHSSKINVV 330
            ++YT+H S Q++ SQ DLNS+  R ++LLK+YD++ILYH  K NVV
Sbjct: 1191 EIYTDHRSLQYIMSQRDLNSRQRRWIELLKDYDLSILYHPGKANVV 1236


>ref|XP_004234875.1| PREDICTED: uncharacterized protein LOC101266912 [Solanum
           lycopersicum]
          Length = 150

 Score = 97.4 bits (241), Expect(2) = 9e-19
 Identities = 68/152 (44%), Positives = 86/152 (56%), Gaps = 8/152 (5%)
 Frame = +3

Query: 339 DALIRKVESMKSLTRLIVDERPLT*EVQFLAISFVRLDILNSDRILA*VEARSYLLEKIK 518
           +AL +K  SM SL  L   E PL  +VQ LA SFVRLDI  S               KI+
Sbjct: 15  EALSQKAMSMGSLAMLQGREHPLARDVQSLANSFVRLDISESG--------------KIR 60

Query: 519 VQ*YDNVKLYKIRDKVMRGEAKEAMLDSEGVS*GLRGECVF--------LVLEIXXXXXX 674
            Q +D+  L+KIRD V++GEAK A+LDSEGV   ++G            L++E       
Sbjct: 61  AQQFDDCDLFKIRDTVLKGEAKTAILDSEGVL-RIKGRISVPHTSYLTRLIME-EAHSSR 118

Query: 675 XXLISGATKMYRDLKQHYWRGRMKRDIVEFVS 770
             +  G+TK+Y DLKQHYW  RMKRDIV+FVS
Sbjct: 119 NSIHPGSTKIYLDLKQHYWLCRMKRDIVDFVS 150



 Score = 23.1 bits (48), Expect(2) = 9e-19
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = +1

Query: 292 MTILYHSSKINVV 330
           MTI YHS K NVV
Sbjct: 1   MTINYHSGKANVV 13


>ref|XP_006340520.1| PREDICTED: uncharacterized protein LOC102599426 [Solanum tuberosum]
          Length = 1228

 Score = 99.4 bits (246), Expect = 1e-18
 Identities = 71/152 (46%), Positives = 89/152 (58%), Gaps = 10/152 (6%)
 Frame = +3

Query: 339 DALIRKVESMKSLTRLIVDERPLT*EVQFLAISFVRLDILNSDRILA*VEARSYLLEKIK 518
           DAL  +  SM SL  L V E  L  + + LA SFV LD   S ++LA VEARS LLE+I 
Sbjct: 435 DALSLEAVSMGSLAMLQVGECLLARDFKSLANSFVSLDNSESGKVLAYVEARSSLLEQIW 494

Query: 519 VQ*YDNVKLYKIRDKVMRGEAKEAMLDSEGVS*GLR----------GECVFLVLEIXXXX 668
            Q +D+  L KIRDKV +GEA +A+LDSE V   LR          G+   L++E     
Sbjct: 495 TQQFDDGDLCKIRDKVSKGEAMDAILDSERV---LRIKGRICVPRTGDLTRLIME-EAYS 550

Query: 669 XXXXLISGATKMYRDLKQHYWRGRMKRDIVEF 764
               +   ATKMY DLKQHYW  RMK++IV+F
Sbjct: 551 LRYSIHHEATKMYCDLKQHYWWSRMKKEIVDF 582


>ref|XP_004239560.1| PREDICTED: uncharacterized protein LOC101255493 [Solanum
           lycopersicum]
          Length = 326

 Score = 70.1 bits (170), Expect(2) = 8e-17
 Identities = 43/90 (47%), Positives = 56/90 (62%)
 Frame = +3

Query: 339 DALIRKVESMKSLTRLIVDERPLT*EVQFLAISFVRLDILNSDRILA*VEARSYLLEKIK 518
           +AL +K  SM SL  L V E  L+ +VQ L  SFVRLDI  S ++LA + ARS L+E I+
Sbjct: 100 NALSQKAVSMGSLAMLKVIEHLLSRDVQSLTSSFVRLDISESSKVLAYMGARSSLMENIR 159

Query: 519 VQ*YDNVKLYKIRDKVMRGEAKEAMLDSEG 608
            Q +DN  L KIRDKV +G+ +   L   G
Sbjct: 160 AQQFDNGDLCKIRDKVFKGQVRVQFLKELG 189



 Score = 43.9 bits (102), Expect(2) = 8e-17
 Identities = 21/46 (45%), Positives = 29/46 (63%)
 Frame = +1

Query: 193 KVYTNHGSFQHVFSQCDLNSKHHR*MKLLKNYDMTILYHSSKINVV 330
           +V T H S Q++F+  DLN +  R +  LK+Y MTILYH  K  +V
Sbjct: 53  EVLTYHRSLQYIFNSRDLNLRKRRWLDFLKDYYMTILYHLGKTYIV 98


>ref|XP_004229115.1| PREDICTED: uncharacterized protein LOC101247457 [Solanum
           lycopersicum]
          Length = 173

 Score = 84.3 bits (207), Expect = 4e-14
 Identities = 53/120 (44%), Positives = 69/120 (57%), Gaps = 10/120 (8%)
 Frame = +3

Query: 459 NSDRILA*VEARSYLLEKIKVQ*YDNVKLYKIRDKVMRGEAKEAMLDSEGVS*GLR---- 626
           +SD ++  +EARS L+E+I+   +D+ KL  IRDKV+R EAKE +LD  GV   LR    
Sbjct: 25  DSDGMIVFIEARSSLVEQIRAHHFDDEKLCIIRDKVLRWEAKEVVLDPNGV---LRIGGR 81

Query: 627 ------GECVFLVLEIXXXXXXXXLISGATKMYRDLKQHYWRGRMKRDIVEFVSQCLNCQ 788
                 G+ + L+LE         +   A KMY DL QHYW   M RDI  FVS+CL CQ
Sbjct: 82  ICVPKTGDLIRLILE-EAHCSRFSIHPRAAKMYHDLSQHYWLCGMTRDISNFVSRCLTCQ 140


>gb|AAV43973.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 846

 Score = 53.1 bits (126), Expect(2) = 7e-14
 Identities = 23/46 (50%), Positives = 34/46 (73%)
 Frame = +1

Query: 193 KVYTNHGSFQHVFSQCDLNSKHHR*MKLLKNYDMTILYHSSKINVV 330
           +VYT+H S +++F+Q DLN +  R ++L+K+YDM I YH  K NVV
Sbjct: 274 EVYTDHKSLKYIFTQPDLNMRQRRWLELIKDYDMRIHYHPGKANVV 319



 Score = 50.8 bits (120), Expect(2) = 7e-14
 Identities = 33/122 (27%), Positives = 64/122 (52%), Gaps = 1/122 (0%)
 Frame = +3

Query: 426 LAISFVRLDI-LNSDRILA*VEARSYLLEKIKVQ*YDNVKLYKIRDKVMRGEAKEAMLDS 602
           L   F RL++ + S   +A +EA+  L+++++    ++  + +I+  + RG+A   + D 
Sbjct: 341 LCKEFERLNLGIVSRGFVAALEAKPTLIDQVREAQINDPDIQEIKKNMRRGKAIGFLEDE 400

Query: 603 EGVS*GLRGECVFLVLEIXXXXXXXXLISGATKMYRDLKQHYWRGRMKRDIVEFVSQCLN 782
           +G       + +   +          +  G+TKMY+DLK+ +W   MKR+I E+V+ C  
Sbjct: 401 QGTGVTPDNKDLKDAILKEAHDTLYSIHPGSTKMYQDLKERFWWASMKREIAEYVAVCDV 460

Query: 783 CQ 788
           CQ
Sbjct: 461 CQ 462


>gb|AAP43918.1| integrase [Gossypium hirsutum]
          Length = 350

 Score = 54.3 bits (129), Expect(2) = 9e-14
 Identities = 43/127 (33%), Positives = 59/127 (46%), Gaps = 6/127 (4%)
 Frame = +3

Query: 426 LAISFVRLDILNSDRILA*VEARSYLLEKIKVQ*YDNVKLYKIRDKVMRGEAKEAMLDSE 605
           L +   +L I +   ILA + ARS  L++I     ++  L   R +       +  + S+
Sbjct: 105 LRVMNTQLKISDDGSILAELRARSMFLQEISEAQKNDQDLLAKRKQCEADMGSDFRIGSD 164

Query: 606 GVS*GLRGECV----FLVLEIXXXXXXXXLI--SGATKMYRDLKQHYWRGRMKRDIVEFV 767
           G        CV     L+  I        L    G+TKMY DLK+ YW   MKRDI EFV
Sbjct: 165 GCLMFKNQICVPKNDELIQNILHEAHNSCLAVHPGSTKMYNDLKKMYWWSGMKRDISEFV 224

Query: 768 SQCLNCQ 788
           S+CL CQ
Sbjct: 225 SKCLVCQ 231



 Score = 49.3 bits (116), Expect(2) = 9e-14
 Identities = 22/46 (47%), Positives = 33/46 (71%)
 Frame = +1

Query: 193 KVYTNHGSFQHVFSQCDLNSKHHR*MKLLKNYDMTILYHSSKINVV 330
           +VYT+H S +++ SQ DLN +  R ++LLK+Y++ I YH  K NVV
Sbjct: 48  RVYTDHKSLKYLMSQKDLNLRQRRWLELLKDYELVIDYHPGKTNVV 93


>gb|AAV31274.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|54287634|gb|AAV31378.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1400

 Score = 52.8 bits (125), Expect(2) = 2e-13
 Identities = 23/46 (50%), Positives = 34/46 (73%)
 Frame = +1

Query: 193  KVYTNHGSFQHVFSQCDLNSKHHR*MKLLKNYDMTILYHSSKINVV 330
            +VYT+H S +++F+Q DLN +  R ++L+K+YDM I YH  K NVV
Sbjct: 895  EVYTDHKSLKYIFTQPDLNMRQRRWLELIKDYDMGIHYHPGKANVV 940



 Score = 49.7 bits (117), Expect(2) = 2e-13
 Identities = 37/130 (28%), Positives = 69/130 (53%), Gaps = 9/130 (6%)
 Frame = +3

Query: 426  LAISFVRLDI-LNSDRILA*VEARSYLLEKIKVQ*YDNVKLYKIRDKVMRGEAKEAMLDS 602
            L   F RL++ + S   +A +EA+  L+++++    ++  + +I+  + RG+A   + D 
Sbjct: 962  LCQEFERLNLGIVSRGFVAALEAKPTLIDQVREAQINDPDIQEIKKNMRRGKAIGFLEDE 1021

Query: 603  EGVS*GLRGECVFL-----VLEIXXXXXXXXLIS---GATKMYRDLKQHYWRGRMKRDIV 758
            +G      GE + +     + ++        L S   G+TKMY+DLK+ +W   MKR+I 
Sbjct: 1022 QGTV--WLGERICVPDNKDLKDVILKEAHDTLYSIHPGSTKMYQDLKERFWWASMKREIA 1079

Query: 759  EFVSQCLNCQ 788
            E+V+ C  CQ
Sbjct: 1080 EYVAVCDVCQ 1089


>gb|ABA97872.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 923

 Score = 52.8 bits (125), Expect(2) = 4e-13
 Identities = 23/46 (50%), Positives = 34/46 (73%)
 Frame = +1

Query: 193 KVYTNHGSFQHVFSQCDLNSKHHR*MKLLKNYDMTILYHSSKINVV 330
           +VYT+H S +++F+Q DLN +  R ++L+K+YDM I YH  K NVV
Sbjct: 541 EVYTDHKSLKYIFTQPDLNMRQRRWLELIKDYDMGIHYHPGKANVV 586



 Score = 48.5 bits (114), Expect(2) = 4e-13
 Identities = 36/128 (28%), Positives = 65/128 (50%), Gaps = 7/128 (5%)
 Frame = +3

Query: 426 LAISFVRLDI-LNSDRILA*VEARSYLLEKIKVQ*YDNVKLYKIRDKVMRGEAKEAMLDS 602
           L   F RL++ + S   +A +EA+  L+++++    ++  + +I+  + RG+A   + D 
Sbjct: 608 LCKEFERLNMGIVSRGFVAALEAKPTLIDQVREAQINDPDIQEIKKNMRRGKAIGYLEDE 667

Query: 603 EGVS*GLRGECVFLVLEIXXXXXXXX------LISGATKMYRDLKQHYWRGRMKRDIVEF 764
           +G        CV    E+              +  G+TKMY+DLK+ +W   MKR+I E+
Sbjct: 668 QGTIWLGERICVPESKELKDAILKEAHDTLYSIHPGSTKMYQDLKEKFWWASMKREIAEY 727

Query: 765 VSQCLNCQ 788
           V+ C  CQ
Sbjct: 728 VAVCDVCQ 735


>gb|AEJ07934.1| Xilon1 gag-pol polyprotein [Zea mays subsp. mexicana]
          Length = 1604

 Score = 51.2 bits (121), Expect(2) = 7e-13
 Identities = 50/150 (33%), Positives = 73/150 (48%), Gaps = 8/150 (5%)
 Frame = +3

Query: 363  SMKSLTRLIVDERPLT*EVQFLAISFVRLDI--LNSDRILA*VEARSYLLEKIKVQ*YDN 536
            S KS   L+V  RP+  E   LA  F RL +  LN+ R +  VE    L  +IK    ++
Sbjct: 1084 SRKSQVNLMV-ARPMPYE---LAKEFDRLSLGFLNNSRGVT-VELEPTLEREIKEAQKND 1138

Query: 537  VKLYKIRDKVMRGEAKEAMLDSEGVS*GLRGECVFLVLEIXXXXXXXX------LISGAT 698
             K+ +IR  ++ G  K+   D+EGV       CV  V  I              +  G+ 
Sbjct: 1139 EKISEIRRLILDGRGKDFREDAEGVVWFKDRLCVPNVQSIRELILKEAHETAYSIHPGSE 1198

Query: 699  KMYRDLKQHYWRGRMKRDIVEFVSQCLNCQ 788
            KMY+DLK+ +W   MKR+I E V+ C +C+
Sbjct: 1199 KMYQDLKKKFWWYGMKREIAEHVAMCDSCR 1228



 Score = 49.3 bits (116), Expect(2) = 7e-13
 Identities = 20/45 (44%), Positives = 33/45 (73%)
 Frame = +1

Query: 196  VYTNHGSFQHVFSQCDLNSKHHR*MKLLKNYDMTILYHSSKINVV 330
            VYT+H S +++F+Q +LN +  R ++L+K+Y++ I YH  K NVV
Sbjct: 1035 VYTDHKSLKYIFTQSELNMRQRRWLELIKDYELEIHYHPGKANVV 1079


>gb|ABA98372.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1800

 Score = 51.2 bits (121), Expect(2) = 7e-13
 Identities = 21/46 (45%), Positives = 34/46 (73%)
 Frame = +1

Query: 193  KVYTNHGSFQHVFSQCDLNSKHHR*MKLLKNYDMTILYHSSKINVV 330
            ++YT+H S +++F+Q DLN +  R ++L+K+YD+ I YH  K NVV
Sbjct: 1222 EIYTDHKSLKYIFTQSDLNLRQRRWLELIKDYDVGIHYHPGKANVV 1267



 Score = 49.3 bits (116), Expect(2) = 7e-13
 Identities = 39/126 (30%), Positives = 62/126 (49%), Gaps = 11/126 (8%)
 Frame = +3

Query: 444  RLDILNSDRI----LA*VEARSYLLEKIKVQ*YDNVKLYKIRDKVMRGEAKEAMLDSEGV 611
            R++ LN   +    LA +EA+S LL++I+    ++  ++ +   + +G+A     D  G 
Sbjct: 1292 RMEALNLSIVGRGFLAALEAKSTLLDQIREAQKNDPDMHGLLKNMKQGKAAGFTEDEHGT 1351

Query: 612  S*GLRGECV-------FLVLEIXXXXXXXXLISGATKMYRDLKQHYWRGRMKRDIVEFVS 770
                   CV        L+L+         +  G+TKMY DLK+ YW   MKR+I EFV+
Sbjct: 1352 LWNGNRVCVPDNRELKQLILQ-EAHESPYSIHPGSTKMYLDLKEKYWWVSMKREIAEFVA 1410

Query: 771  QCLNCQ 788
             C  CQ
Sbjct: 1411 LCDVCQ 1416


>gb|AAK13085.1|AC078839_1 Similar to Sorghum bicolor 22 kDakafirinclusterpolyprotein [Oryza
            sativa Japonica Group]
          Length = 1484

 Score = 52.4 bits (124), Expect(2) = 7e-13
 Identities = 23/46 (50%), Positives = 34/46 (73%)
 Frame = +1

Query: 193  KVYTNHGSFQHVFSQCDLNSKHHR*MKLLKNYDMTILYHSSKINVV 330
            +VYT+H S +++F+Q DLN +  R ++L+K+YDM I YH  K NVV
Sbjct: 906  EVYTDHKSLKYIFTQPDLNLRQRRWLELIKDYDMGIHYHPGKANVV 951



 Score = 48.1 bits (113), Expect(2) = 7e-13
 Identities = 33/125 (26%), Positives = 65/125 (52%), Gaps = 6/125 (4%)
 Frame = +3

Query: 432  ISFVRLDILNSDRILA*VEARSYLLEKIKVQ*YDNVKLYKIRDKVMRGEAKEAMLDSEGV 611
            +  + L I+    ++A +EA+  L+E++++    + ++ +++  +  G+A+  + D +G 
Sbjct: 977  LEHLNLGIVEHGFVVA-LEAQPTLVEQVRIAQASDPEIAELKKNMRVGKARGFVEDEQGT 1035

Query: 612  S*GLRGECVFLVLEIXXXXXXXX------LISGATKMYRDLKQHYWRGRMKRDIVEFVSQ 773
                   CV    E+              +  G+TKMY+DLK+ +W  RM+R+I EFV+ 
Sbjct: 1036 IWMGERLCVPENKELKDLILTEAHQTQYSIHPGSTKMYQDLKEKFWWVRMRREIAEFVAL 1095

Query: 774  CLNCQ 788
            C  CQ
Sbjct: 1096 CDVCQ 1100


>gb|ABB47457.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1461

 Score = 52.4 bits (124), Expect(2) = 7e-13
 Identities = 23/46 (50%), Positives = 34/46 (73%)
 Frame = +1

Query: 193  KVYTNHGSFQHVFSQCDLNSKHHR*MKLLKNYDMTILYHSSKINVV 330
            +VYT+H S +++F+Q DLN +  R ++L+K+YDM I YH  K NVV
Sbjct: 883  EVYTDHKSLKYIFTQPDLNLRQRRWLELIKDYDMGIHYHPGKANVV 928



 Score = 48.1 bits (113), Expect(2) = 7e-13
 Identities = 33/125 (26%), Positives = 65/125 (52%), Gaps = 6/125 (4%)
 Frame = +3

Query: 432  ISFVRLDILNSDRILA*VEARSYLLEKIKVQ*YDNVKLYKIRDKVMRGEAKEAMLDSEGV 611
            +  + L I+    ++A +EA+  L+E++++    + ++ +++  +  G+A+  + D +G 
Sbjct: 954  LEHLNLGIVEHGFVVA-LEAQPTLVEQVRIAQASDPEIAELKKNMRVGKARGFVEDEQGT 1012

Query: 612  S*GLRGECVFLVLEIXXXXXXXX------LISGATKMYRDLKQHYWRGRMKRDIVEFVSQ 773
                   CV    E+              +  G+TKMY+DLK+ +W  RM+R+I EFV+ 
Sbjct: 1013 IWMGERLCVPENKELKDLILTEAHQTQYSIHPGSTKMYQDLKEKFWWVRMRREIAEFVAL 1072

Query: 774  CLNCQ 788
            C  CQ
Sbjct: 1073 CDVCQ 1077


>gb|AAV32171.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1310

 Score = 52.0 bits (123), Expect(2) = 7e-13
 Identities = 22/46 (47%), Positives = 34/46 (73%)
 Frame = +1

Query: 193 KVYTNHGSFQHVFSQCDLNSKHHR*MKLLKNYDMTILYHSSKINVV 330
           ++YT+H S +++F+Q DLN +  R ++L+K+YDM I YH  K NVV
Sbjct: 843 EMYTDHKSLKYIFTQPDLNMRQRRWLELIKDYDMEIHYHPGKANVV 888



 Score = 48.5 bits (114), Expect(2) = 7e-13
 Identities = 35/122 (28%), Positives = 63/122 (51%), Gaps = 6/122 (4%)
 Frame = +3

Query: 441  VRLDILNSDRILA*VEARSYLLEKIKVQ*YDNVKLYKIRDKVMRGEAKEAMLDSEGVS*G 620
            + LDI+ S   +A +EA+  L ++++    ++  + +I+  + RG+A   + D +G +  
Sbjct: 917  LNLDIV-SKGFVATLEAQPTLFDQVREAQVNDPDIQEIKKNMRRGKAIGYVEDEQGTAWL 975

Query: 621  LRGECVFLVLEIXXXXXXXX------LISGATKMYRDLKQHYWRGRMKRDIVEFVSQCLN 782
                CV    E+              +  G+TKMY+DLKQ +W   M+R+I E+V+ C  
Sbjct: 976  GERICVPDNKELKDTIMKEAHETLYSIHPGSTKMYQDLKQQFWWASMRREIAEYVALCDV 1035

Query: 783  CQ 788
            CQ
Sbjct: 1036 CQ 1037


>emb|CAE02081.2| OSJNBa0074B10.9 [Oryza sativa Japonica Group]
          Length = 1659

 Score = 52.0 bits (123), Expect(2) = 9e-13
 Identities = 22/46 (47%), Positives = 34/46 (73%)
 Frame = +1

Query: 193  KVYTNHGSFQHVFSQCDLNSKHHR*MKLLKNYDMTILYHSSKINVV 330
            ++YT+H S +++F+Q DLN +  R ++L+K+YDM I YH  K NVV
Sbjct: 1097 EMYTDHKSLKYIFTQPDLNMRQRRWLELIKDYDMEIHYHPGKANVV 1142



 Score = 48.1 bits (113), Expect(2) = 9e-13
 Identities = 35/128 (27%), Positives = 65/128 (50%), Gaps = 7/128 (5%)
 Frame = +3

Query: 426  LAISFVRLDI-LNSDRILA*VEARSYLLEKIKVQ*YDNVKLYKIRDKVMRGEAKEAMLDS 602
            L   F +L++ + S   +A +EA+  L ++++    +++ + +I+  + RG+A   + D 
Sbjct: 1164 LCQEFEKLNLGIVSKGFVAALEAKPTLFDQVREAQVNDLDIQEIKKNMRRGKAIGYVEDE 1223

Query: 603  EGVS*GLRGECVFLVLEIXXXXXXXX------LISGATKMYRDLKQHYWRGRMKRDIVEF 764
            +G        CV    E+              +  G+TKMY+DLKQ +W   M+R+I E+
Sbjct: 1224 QGTVWLGERICVPENKELKDTIMKEAHETLYSIYPGSTKMYQDLKQPFWWASMRREIAEY 1283

Query: 765  VSQCLNCQ 788
            V+ C  CQ
Sbjct: 1284 VALCDVCQ 1291


>gb|AAP43917.1| integrase [Gossypium hirsutum]
          Length = 355

 Score = 50.4 bits (119), Expect(2) = 1e-12
 Identities = 41/127 (32%), Positives = 57/127 (44%), Gaps = 6/127 (4%)
 Frame = +3

Query: 426 LAISFVRLDILNSDRILA*VEARSYLLEKIKVQ*YDNVKLYKIRDKVMRGEAKEAMLDSE 605
           L +   +L I +   ILA + AR   L++I     ++  L   R +       +  + S 
Sbjct: 110 LRVMNTQLKISDDGSILAELRARPMFLQEISEAQKNDQNLLAKRKQCEADTRSDFRIGSN 169

Query: 606 GVS*GLRGECV----FLVLEIXXXXXXXXLI--SGATKMYRDLKQHYWRGRMKRDIVEFV 767
           G        CV     L+ +I        L    G+TKMY DLK+ YW    KRDI EFV
Sbjct: 170 GCLMFKNRICVPKNDELIQKILHEAHNGCLAVHPGSTKMYNDLKKMYWWSGKKRDIFEFV 229

Query: 768 SQCLNCQ 788
           S+CL CQ
Sbjct: 230 SKCLVCQ 236



 Score = 49.3 bits (116), Expect(2) = 1e-12
 Identities = 22/46 (47%), Positives = 33/46 (71%)
 Frame = +1

Query: 193 KVYTNHGSFQHVFSQCDLNSKHHR*MKLLKNYDMTILYHSSKINVV 330
           +VYT+H S +++ SQ DLN +  R ++LLK+Y++ I YH  K NVV
Sbjct: 53  RVYTDHKSLKYLMSQKDLNLRQRRWLELLKDYELVIDYHPGKANVV 98