BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atropa21_contig00032236
         (1073 letters)

Database: nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABD33261.1| RNA-directed DNA polymerase (Reverse transcriptas...   162   1e-51
gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]               169   8e-48
gb|AAC67331.1| putative non-LTR retroelement reverse transcripta...   176   1e-45
emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulga...   152   1e-45
emb|CAB72467.1| putative protein [Arabidopsis thaliana]               160   3e-45
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...   164   4e-45
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta...   162   4e-44
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip...   166   2e-43
dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like ...   156   4e-43
emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-li...   156   4e-43
emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga...   150   7e-43
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta...   163   2e-42
gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]                159   3e-42
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,...   152   4e-42
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc...   149   1e-41
gb|EAZ45328.1| hypothetical protein OsJ_29974 [Oryza sativa Japo...   139   1e-41
gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thali...   159   7e-41
ref|NP_001175161.1| Os07g0417700 [Oryza sativa Japonica Group] g...   134   7e-41
emb|CAE04660.2| OSJNBa0061G20.16 [Oryza sativa Japonica Group]        137   3e-40
gb|EEE61581.1| hypothetical protein OsJ_15963 [Oryza sativa Japo...   144   4e-40

>gb|ABD33261.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 402

 Score =  162 bits (411), Expect(2) = 1e-51
 Identities = 72/170 (42%), Positives = 121/170 (71%)
 Frame = -1

Query: 689 PMDTAEQRNMLTQEFSAQEVKQALWAIEGDKVPSPDGYSSQFYKDAWDVVGADLTEGVLE 510
           PM +  Q+++L  +F+A EVK  L++++  K P  DGY+  F+K +W+++G  + + +L+
Sbjct: 107 PMLSQHQQDLLCSKFTAVEVKNVLFSMDSSKAPGIDGYNVHFFKCSWNIIGDSVIDAILD 166

Query: 509 FFKTGRMAKGLNLTVITLIPKSSHAESVGDYKPISCCNTLYKVISKMLCNRLKKVLPDII 330
           FFKTG M K +N T +TL+PK  +  SV +++PI+CC+ +YK+ISK+L +R++ VL  ++
Sbjct: 167 FFKTGFMPKIINCTYMTLLPKEVNVTSVKNFRPIACCSVIYKIISKILTSRMQGVLNSVV 226

Query: 329 SDNHSAFVAGRFIVQNFLICQGLVRLYNRKVATRSCLIKIDLRKAYDTVD 180
           S+N SAFV GR I  N ++   LV+ Y+RK  +  C++KIDL+KAY++V+
Sbjct: 227 SENQSAFVKGRVIFDNIILSHELVKSYSRKGISPRCMVKIDLQKAYNSVE 276



 Score = 68.9 bits (167), Expect(2) = 1e-51
 Identities = 30/57 (52%), Positives = 39/57 (68%)
 Frame = -2

Query: 178 PFVKEVLYELHFSYKFIKWLMECLTTPQHSIAINRGIYENIQGKRGLRQGDPISPLL 8
           PF+K ++ EL FSYKF+ W+M CLTT  ++  IN  +      K+GLRQGDPISP L
Sbjct: 278 PFIKHLMLELGFSYKFVNWVMGCLTTASYTFNINGDLTRPFAAKKGLRQGDPISPYL 334


>gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]
          Length = 872

 Score =  169 bits (429), Expect(2) = 8e-48
 Identities = 78/166 (46%), Positives = 114/166 (68%)
 Frame = -1

Query: 680 TAEQRNMLTQEFSAQEVKQALWAIEGDKVPSPDGYSSQFYKDAWDVVGADLTEGVLEFFK 501
           T     MLT+E S++E+K  L+++  DK P PDGY+S+FYK  WD++G + T  V  FF+
Sbjct: 89  TNSDNEMLTREVSSEEIKTVLFSMPKDKSPGPDGYTSEFYKATWDIIGQEFTLPVQSFFQ 148

Query: 500 TGRMAKGLNLTVITLIPKSSHAESVGDYKPISCCNTLYKVISKMLCNRLKKVLPDIISDN 321
            G + KG+N  ++ LIPK   A+ + DY+PISCCN LYKVISK++ NRLK +LP  I++N
Sbjct: 149 KGFLPKGINSIILALIPKKLAAKEMRDYRPISCCNVLYKVISKIIANRLKLLLPRFIAEN 208

Query: 320 HSAFVAGRFIVQNFLICQGLVRLYNRKVATRSCLIKIDLRKAYDTV 183
            SAFV  R +++N L+   LV+ Y++   +  C IKID+ KA+D+V
Sbjct: 209 QSAFVKDRLLIENLLLATELVKDYHKDSISARCAIKIDISKAFDSV 254



 Score = 48.9 bits (115), Expect(2) = 8e-48
 Identities = 23/56 (41%), Positives = 32/56 (57%)
 Frame = -2

Query: 175 FVKEVLYELHFSYKFIKWLMECLTTPQHSIAINRGIYENIQGKRGLRQGDPISPLL 8
           F+   L  ++FS  FI W+  C+TT   S+ +N  +    Q KRGLRQG  +SP L
Sbjct: 258 FLTNTLVAMNFSPTFIHWINLCITTASFSVQVNGDLVGYFQSKRGLRQGCSLSPYL 313


>gb|AAC67331.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1449

 Score =  176 bits (445), Expect(2) = 1e-45
 Identities = 79/163 (48%), Positives = 117/163 (71%)
 Frame = -1

Query: 671  QRNMLTQEFSAQEVKQALWAIEGDKVPSPDGYSSQFYKDAWDVVGADLTEGVLEFFKTGR 492
            +++MLT   SA+E++ AL+++  DK P PDGY+S+FYK AWD++GA+    V  FF+ G 
Sbjct: 860  EKDMLTASVSAKEIRGALFSMPNDKSPGPDGYTSEFYKRAWDIIGAEFVLAVKSFFEKGF 919

Query: 491  MAKGLNLTVITLIPKSSHAESVGDYKPISCCNTLYKVISKMLCNRLKKVLPDIISDNHSA 312
            + KG+N T++ LIPK   A+ + DY+PISCCN +YKVISK++ NRLK VLP+ I+ N SA
Sbjct: 920  LPKGVNTTILALIPKKLEAKEMKDYRPISCCNVIYKVISKIIANRLKHVLPNFIAGNQSA 979

Query: 311  FVAGRFIVQNFLICQGLVRLYNRKVATRSCLIKIDLRKAYDTV 183
            FV  R +++N L+   LV+ Y++   +  C IKID+ KA+D+V
Sbjct: 980  FVKDRLLIENLLLATELVKDYHKDTISGRCAIKIDISKAFDSV 1022



 Score = 35.4 bits (80), Expect(2) = 1e-45
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -2

Query: 175  FVKEVLYELHFSYKFIKWLMECLTTPQHSIAINRGIYENIQGKR 44
            F+K VL  L F  +F+ W+M C+TT   S+ +N  +    Q  R
Sbjct: 1026 FLKNVLSALDFPPEFVHWVMLCVTTASFSVQVNGELAGYFQSSR 1069


>emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1110

 Score =  152 bits (384), Expect(2) = 1e-45
 Identities = 65/167 (38%), Positives = 110/167 (65%)
 Frame = -1

Query: 680 TAEQRNMLTQEFSAQEVKQALWAIEGDKVPSPDGYSSQFYKDAWDVVGADLTEGVLEFFK 501
           +A+ +  L +E ++ E+ +AL  I  DK P  DG+++ F+K +W  +  ++  G+ EFF 
Sbjct: 427 SAQAKESLIREVASTEIDEALAGIGNDKAPGLDGFNAYFFKKSWGSIKQEIYAGIQEFFN 486

Query: 500 TGRMAKGLNLTVITLIPKSSHAESVGDYKPISCCNTLYKVISKMLCNRLKKVLPDIISDN 321
             RM + +N  V+TL+PK  HA  V +++PI+CC  +YK+ISKML NR+K ++ +++++ 
Sbjct: 487 NSRMHRPINCIVVTLLPKVQHATRVKEFRPIACCTVIYKIISKMLTNRMKGIIGEVVNEA 546

Query: 320 HSAFVAGRFIVQNFLICQGLVRLYNRKVATRSCLIKIDLRKAYDTVD 180
            S F+ GR I  N L+   L+R Y RK  +  C++K+D+RKAYD+V+
Sbjct: 547 QSGFIPGRHIADNILLASELIRGYTRKHMSPRCIMKVDIRKAYDSVE 593



 Score = 58.9 bits (141), Expect(2) = 1e-45
 Identities = 24/56 (42%), Positives = 39/56 (69%)
 Frame = -2

Query: 175 FVKEVLYELHFSYKFIKWLMECLTTPQHSIAINRGIYENIQGKRGLRQGDPISPLL 8
           F++ +LYE  F  +F+ W+MEC++T  +S+ +N    +  Q ++GLRQGDP+SP L
Sbjct: 596 FLETLLYEFGFPSRFVGWIMECVSTVSYSVLVNGIPTQPFQARKGLRQGDPMSPFL 651


>emb|CAB72467.1| putative protein [Arabidopsis thaliana]
          Length = 762

 Score =  160 bits (406), Expect(2) = 3e-45
 Identities = 71/160 (44%), Positives = 112/160 (70%)
 Frame = -1

Query: 662 MLTQEFSAQEVKQALWAIEGDKVPSPDGYSSQFYKDAWDVVGADLTEGVLEFFKTGRMAK 483
           MLT+  SA+E+K+ L+++  DK P PDG++S+F+K++W+++G +    +  FF  G + K
Sbjct: 1   MLTRVVSAEEIKKVLFSMPNDKSPGPDGFTSEFFKESWEILGPEFILAIQSFFALGFLPK 60

Query: 482 GLNLTVITLIPKSSHAESVGDYKPISCCNTLYKVISKMLCNRLKKVLPDIISDNHSAFVA 303
           G+N T++ LIPK   ++ + DY+PISCCN +YKVISK+L NRLK +LP  I+ N S+FV 
Sbjct: 61  GVNSTILALIPKKLESKEMKDYRPISCCNVMYKVISKILANRLKLLLPQFIAGNQSSFVK 120

Query: 302 GRFIVQNFLICQGLVRLYNRKVATRSCLIKIDLRKAYDTV 183
            R +++N L+   LV+ Y++   +  C IKID+ KA D+V
Sbjct: 121 DRLLIENVLLATDLVKDYHKDSISERCAIKIDISKASDSV 160



 Score = 49.3 bits (116), Expect(2) = 3e-45
 Identities = 23/56 (41%), Positives = 31/56 (55%)
 Frame = -2

Query: 175 FVKEVLYELHFSYKFIKWLMECLTTPQHSIAINRGIYENIQGKRGLRQGDPISPLL 8
           F+   L  +HF   FI W+  C+TTP  S+ +N  +    Q  RGLRQG  +SP L
Sbjct: 164 FLINTLTAMHFPEMFIHWIRLCITTPSFSVQVNGELAGFFQSSRGLRQGCALSPYL 219


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein
           [Arabidopsis thaliana]
          Length = 1223

 Score =  164 bits (414), Expect(2) = 4e-45
 Identities = 74/165 (44%), Positives = 115/165 (69%)
 Frame = -1

Query: 677 AEQRNMLTQEFSAQEVKQALWAIEGDKVPSPDGYSSQFYKDAWDVVGADLTEGVLEFFKT 498
           A+Q++++ +  +A+E+++ L+ +  DK P PDGY+S+F+K  W+++G + T  V  FF  
Sbjct: 444 ADQQSLI-RPVTAEEIRKVLFRMPSDKSPGPDGYTSEFFKATWEIIGDEFTLAVQSFFTK 502

Query: 497 GRMAKGLNLTVITLIPKSSHAESVGDYKPISCCNTLYKVISKMLCNRLKKVLPDIISDNH 318
           G + KG+N T++ LIPK + A  + DY+PISCCN LYKVISK++ NRLK VLP  I+ N 
Sbjct: 503 GFLPKGINSTILALIPKKTEAREMKDYRPISCCNVLYKVISKIIANRLKLVLPKFIAGNQ 562

Query: 317 SAFVAGRFIVQNFLICQGLVRLYNRKVATRSCLIKIDLRKAYDTV 183
           SAFV  R +++N L+   LV+ Y++   +  C IKID+ KA+D+V
Sbjct: 563 SAFVKDRLLIENLLLATELVKDYHKDTISTRCAIKIDISKAFDSV 607



 Score = 45.8 bits (107), Expect(2) = 4e-45
 Identities = 23/57 (40%), Positives = 31/57 (54%)
 Frame = -2

Query: 178 PFVKEVLYELHFSYKFIKWLMECLTTPQHSIAINRGIYENIQGKRGLRQGDPISPLL 8
           PF+  V   L F  +FI W+  C+TT   S+ +N  +    Q  RGLRQG  +SP L
Sbjct: 610 PFLINVFTILGFPREFIHWINICITTASFSVQVNGELAGYFQSSRGLRQGCALSPYL 666


>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1216

 Score =  162 bits (410), Expect(2) = 4e-44
 Identities = 73/173 (42%), Positives = 115/173 (66%), Gaps = 1/173 (0%)
 Frame = -1

Query: 698 NLRPMDTAEQ-RNMLTQEFSAQEVKQALWAIEGDKVPSPDGYSSQFYKDAWDVVGADLTE 522
           NL P   +E    +LT+  + +E+K+ ++++  DK P PDGY+S+FYK +W+++G ++  
Sbjct: 156 NLLPFRCSEDDHRLLTRVVTGEEIKKVIFSMPKDKSPGPDGYTSEFYKASWEIIGDEVII 215

Query: 521 GVLEFFKTGRMAKGLNLTVITLIPKSSHAESVGDYKPISCCNTLYKVISKMLCNRLKKVL 342
            +  FF  G + KG+N T++ LIPK   A  + DY+PISCCN LYK ISK+L NRLK++L
Sbjct: 216 AIQSFFAKGFLPKGVNSTILALIPKKKEAREIKDYRPISCCNVLYKAISKILANRLKRIL 275

Query: 341 PDIISDNHSAFVAGRFIVQNFLICQGLVRLYNRKVATRSCLIKIDLRKAYDTV 183
           P  I  N SAFV  R +++N L+   LV+ Y++   +  C +KID+ KA+D++
Sbjct: 276 PKFIVGNQSAFVKDRLLIENVLLATELVKDYHKDSISTRCAMKIDISKAFDSL 328



 Score = 43.9 bits (102), Expect(2) = 4e-44
 Identities = 24/67 (35%), Positives = 36/67 (53%)
 Frame = -2

Query: 208 ISEKLMILLIPFVKEVLYELHFSYKFIKWLMECLTTPQHSIAINRGIYENIQGKRGLRQG 29
           IS+    L   F+  VL  ++F  +FI W+  C++T   SI +N  +    +  RGLRQG
Sbjct: 321 ISKAFDSLQWSFLTHVLAAMNFPGEFIHWISLCMSTASFSIQVNGELAGYFRSARGLRQG 380

Query: 28  DPISPLL 8
             +SP L
Sbjct: 381 CSLSPYL 387


>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
           72.31) [Arabidopsis thaliana]
          Length = 928

 Score =  166 bits (419), Expect(2) = 2e-43
 Identities = 73/162 (45%), Positives = 111/162 (68%)
 Frame = -1

Query: 668 RNMLTQEFSAQEVKQALWAIEGDKVPSPDGYSSQFYKDAWDVVGADLTEGVLEFFKTGRM 489
           + MLT   SA+E+ + ++++  DK P PDGY+++FYK AW+++GA+    +  FF  G +
Sbjct: 334 KEMLTNHVSAEEIHKVVFSMPNDKSPGPDGYTAEFYKGAWNIIGAEFILAIQSFFAKGFL 393

Query: 488 AKGLNLTVITLIPKSSHAESVGDYKPISCCNTLYKVISKMLCNRLKKVLPDIISDNHSAF 309
            KG+N T++ LIPK   A+ + DY+PISCCN LYKVISK++ NRLK VLP  I  N SAF
Sbjct: 394 PKGINSTILALIPKKKEAKEMKDYRPISCCNVLYKVISKIIANRLKLVLPKFIVGNQSAF 453

Query: 308 VAGRFIVQNFLICQGLVRLYNRKVATRSCLIKIDLRKAYDTV 183
           V  R +++N L+   +V+ Y++   +  C +KID+ KA+D+V
Sbjct: 454 VKDRLLIENVLLATEIVKDYHKDSVSSRCALKIDISKAFDSV 495



 Score = 38.1 bits (87), Expect(2) = 2e-43
 Identities = 19/56 (33%), Positives = 29/56 (51%)
 Frame = -2

Query: 175 FVKEVLYELHFSYKFIKWLMECLTTPQHSIAINRGIYENIQGKRGLRQGDPISPLL 8
           F+  VL  ++F  +F  W+  C+TT   S+ +N  +       R LRQG  +SP L
Sbjct: 499 FLINVLEAMNFPPEFTHWITLCITTASFSVQVNGELAGVFSSARELRQGCSLSPYL 554


>dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like protein
           [Arabidopsis thaliana]
          Length = 893

 Score =  156 bits (394), Expect(2) = 4e-43
 Identities = 73/166 (43%), Positives = 117/166 (70%)
 Frame = -1

Query: 680 TAEQRNMLTQEFSAQEVKQALWAIEGDKVPSPDGYSSQFYKDAWDVVGADLTEGVLEFFK 501
           + +Q N L + FS  ++++A +++  +K   PDGYSS+F+K  W VVG ++TE V EFF+
Sbjct: 437 SVDQINDLERSFSDLDIQEAFFSLPRNKASGPDGYSSEFFKGVWFVVGPEVTEAVQEFFR 496

Query: 500 TGRMAKGLNLTVITLIPKSSHAESVGDYKPISCCNTLYKVISKMLCNRLKKVLPDIISDN 321
           +G++ K  N T + LIPK +++  + D++PISC NTLYKVI+K+L +RLKK+L ++IS +
Sbjct: 497 SGQLLKQWNATTLVLIPKITNSSKMTDFRPISCLNTLYKVIAKLLTSRLKKLLNEVISPS 556

Query: 320 HSAFVAGRFIVQNFLICQGLVRLYNRKVATRSCLIKIDLRKAYDTV 183
            SAF+ GR + +N L+   +V  YN K  +   ++K+DLRKA+D+V
Sbjct: 557 QSAFLPGRLLSENVLLATEIVHGYNTKNISSRGMLKVDLRKAFDSV 602



 Score = 46.6 bits (109), Expect(2) = 4e-43
 Identities = 20/56 (35%), Positives = 31/56 (55%)
 Frame = -2

Query: 175 FVKEVLYELHFSYKFIKWLMECLTTPQHSIAINRGIYENIQGKRGLRQGDPISPLL 8
           F+      L    KF+ W+ +C++TP  S+ +N       +  +GLRQGDP+SP L
Sbjct: 606 FIISAFRALAVPEKFVCWINQCISTPYFSVMVNGSSSGFFKSNKGLRQGDPLSPYL 661


>emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-like protein
           [Arabidopsis thaliana]
          Length = 893

 Score =  156 bits (394), Expect(2) = 4e-43
 Identities = 73/166 (43%), Positives = 117/166 (70%)
 Frame = -1

Query: 680 TAEQRNMLTQEFSAQEVKQALWAIEGDKVPSPDGYSSQFYKDAWDVVGADLTEGVLEFFK 501
           + +Q N L + FS  ++++A +++  +K   PDGYSS+F+K  W VVG ++TE V EFF+
Sbjct: 437 SVDQINDLERSFSDLDIQEAFFSLPRNKASGPDGYSSEFFKGVWFVVGPEVTEAVQEFFR 496

Query: 500 TGRMAKGLNLTVITLIPKSSHAESVGDYKPISCCNTLYKVISKMLCNRLKKVLPDIISDN 321
           +G++ K  N T + LIPK +++  + D++PISC NTLYKVI+K+L +RLKK+L ++IS +
Sbjct: 497 SGQLLKQWNATTLVLIPKITNSSKMTDFRPISCLNTLYKVIAKLLTSRLKKLLNEVISPS 556

Query: 320 HSAFVAGRFIVQNFLICQGLVRLYNRKVATRSCLIKIDLRKAYDTV 183
            SAF+ GR + +N L+   +V  YN K  +   ++K+DLRKA+D+V
Sbjct: 557 QSAFLPGRLLSENVLLATEIVHGYNTKNISSRGMLKVDLRKAFDSV 602



 Score = 46.6 bits (109), Expect(2) = 4e-43
 Identities = 20/56 (35%), Positives = 31/56 (55%)
 Frame = -2

Query: 175 FVKEVLYELHFSYKFIKWLMECLTTPQHSIAINRGIYENIQGKRGLRQGDPISPLL 8
           F+      L    KF+ W+ +C++TP  S+ +N       +  +GLRQGDP+SP L
Sbjct: 606 FIISAFRALAVPEKFVCWINQCISTPYFSVMVNGSSSGFFKSNKGLRQGDPLSPYL 661


>emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1114

 Score =  150 bits (380), Expect(2) = 7e-43
 Identities = 70/160 (43%), Positives = 107/160 (66%)
 Frame = -1

Query: 659 LTQEFSAQEVKQALWAIEGDKVPSPDGYSSQFYKDAWDVVGADLTEGVLEFFKTGRMAKG 480
           L Q  + QE+ QAL  I+  K P  DG++S F+K +W V+  ++ EG+L+FF+ G M K 
Sbjct: 437 LVQPITIQEIDQALADIDDTKAPGLDGFNSVFFKKSWLVIKQEIYEGILDFFENGFMHKP 496

Query: 479 LNLTVITLIPKSSHAESVGDYKPISCCNTLYKVISKMLCNRLKKVLPDIISDNHSAFVAG 300
           +N T +TLIPK   A+   DY+PI+CC+TLYK+ISK+L  RL+ V+ +++    + F+  
Sbjct: 497 INCTAVTLIPKIDEAKHAKDYRPIACCSTLYKIISKILTKRLQAVITEVVDCAQTGFIPE 556

Query: 299 RFIVQNFLICQGLVRLYNRKVATRSCLIKIDLRKAYDTVD 180
           R I  N L+   L+R YNR+  +  C+IK+D+RKAYD+V+
Sbjct: 557 RHIGDNILLATELIRGYNRRHVSPRCVIKVDIRKAYDSVE 596



 Score = 51.2 bits (121), Expect(2) = 7e-43
 Identities = 24/56 (42%), Positives = 35/56 (62%)
 Frame = -2

Query: 175 FVKEVLYELHFSYKFIKWLMECLTTPQHSIAINRGIYENIQGKRGLRQGDPISPLL 8
           F++ +L EL F   FI+W+M C+ T  +SI +N         ++GLRQGDP+SP L
Sbjct: 599 FLESMLKELGFPSMFIRWIMACVKTVSYSILLNGIPSIPFDAQKGLRQGDPLSPFL 654


>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1529

 Score =  163 bits (413), Expect(2) = 2e-42
 Identities = 75/162 (46%), Positives = 110/162 (67%)
 Frame = -1

Query: 668  RNMLTQEFSAQEVKQALWAIEGDKVPSPDGYSSQFYKDAWDVVGADLTEGVLEFFKTGRM 489
            +N+LT+E + +E+++ L+A+  +K P PDGY+S+F+K  W + G D    +  FF  G +
Sbjct: 743  QNILTREVTGEEIQKVLFAMPNNKSPGPDGYTSEFFKATWSLTGPDFIAAIQSFFVKGFL 802

Query: 488  AKGLNLTVITLIPKSSHAESVGDYKPISCCNTLYKVISKMLCNRLKKVLPDIISDNHSAF 309
             KGLN T++ LIPK   A  + DY+PISCCN LYKVISK+L NRLK +LP  I  N SAF
Sbjct: 803  PKGLNATILALIPKKDEAIEMKDYRPISCCNVLYKVISKILANRLKLLLPSFILQNQSAF 862

Query: 308  VAGRFIVQNFLICQGLVRLYNRKVATRSCLIKIDLRKAYDTV 183
            V  R +++N L+   LV+ Y+++  T  C +KID+ KA+D+V
Sbjct: 863  VKERLLMENVLLATELVKDYHKESVTPRCAMKIDISKAFDSV 904



 Score = 37.4 bits (85), Expect(2) = 2e-42
 Identities = 19/56 (33%), Positives = 28/56 (50%)
 Frame = -2

Query: 175  FVKEVLYELHFSYKFIKWLMECLTTPQHSIAINRGIYENIQGKRGLRQGDPISPLL 8
            F+   L  L+F   F  W+  C++T   S+ +N  +       RGLRQG  +SP L
Sbjct: 908  FLLNTLEALNFPETFRHWIKLCISTATFSVQVNGELAGFFGSSRGLRQGCALSPYL 963


>gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]
          Length = 740

 Score =  159 bits (403), Expect(2) = 3e-42
 Identities = 73/166 (43%), Positives = 111/166 (66%)
 Frame = -1

Query: 680 TAEQRNMLTQEFSAQEVKQALWAIEGDKVPSPDGYSSQFYKDAWDVVGADLTEGVLEFFK 501
           +A  ++MLT+E +++E ++ L+A+  +K P PDGY+S+F+K  W + G D    +  FF 
Sbjct: 15  SATDQDMLTREVTSEENQKVLFAMPSNKFPGPDGYTSEFFKATWSITGQDFIAAIKSFFI 74

Query: 500 TGRMAKGLNLTVITLIPKSSHAESVGDYKPISCCNTLYKVISKMLCNRLKKVLPDIISDN 321
            G + KGLN T++ LIPK   A  + DY+PISCCN +YKVISK++ NRLK +LP  I  N
Sbjct: 75  KGFLPKGLNATILALIPKKDEATLMRDYRPISCCNVIYKVISKIIANRLKVMLPTFILQN 134

Query: 320 HSAFVAGRFIVQNFLICQGLVRLYNRKVATRSCLIKIDLRKAYDTV 183
            SAFV  R +++N L+   LV+ Y++   +  C +KID+ KA+D+V
Sbjct: 135 QSAFVRERLLIENVLLATELVKDYHKDSISPRCAMKIDISKAFDSV 180



 Score = 40.4 bits (93), Expect(2) = 3e-42
 Identities = 20/56 (35%), Positives = 29/56 (51%)
 Frame = -2

Query: 175 FVKEVLYELHFSYKFIKWLMECLTTPQHSIAINRGIYENIQGKRGLRQGDPISPLL 8
           F+   L  L+F   F  W+  C++T   S+ +N  +      KRGLRQG  +SP L
Sbjct: 184 FLLNTLEALNFPENFCHWIKLCISTATFSVQVNGELAGFFGSKRGLRQGCALSPYL 239


>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
           [Arabidopsis thaliana]
          Length = 1164

 Score =  152 bits (383), Expect(2) = 4e-42
 Identities = 71/163 (43%), Positives = 111/163 (68%)
 Frame = -1

Query: 671 QRNMLTQEFSAQEVKQALWAIEGDKVPSPDGYSSQFYKDAWDVVGADLTEGVLEFFKTGR 492
           Q+  L   FS++++K A +++  +K   PDG+S +F+   W ++G ++TE + EFF +G+
Sbjct: 336 QQVSLDTPFSSEQIKNAFFSLPRNKASGPDGFSPEFFCACWPIIGGEVTEAIHEFFTSGK 395

Query: 491 MAKGLNLTVITLIPKSSHAESVGDYKPISCCNTLYKVISKMLCNRLKKVLPDIISDNHSA 312
           + K  N T + LIPK ++A S+ D++PISC NT+YKVISK+L +RLK  LP  IS + SA
Sbjct: 396 LLKQWNATNLVLIPKITNASSMSDFRPISCLNTVYKVISKLLTDRLKDFLPAAISHSQSA 455

Query: 311 FVAGRFIVQNFLICQGLVRLYNRKVATRSCLIKIDLRKAYDTV 183
           F+ GR  ++N L+   LV  YN+K    S ++K+DLRKA+D+V
Sbjct: 456 FMPGRLFLENVLLATELVHGYNKKNIAPSSMLKVDLRKAFDSV 498



 Score = 47.8 bits (112), Expect(2) = 4e-42
 Identities = 22/56 (39%), Positives = 32/56 (57%)
 Frame = -2

Query: 175 FVKEVLYELHFSYKFIKWLMECLTTPQHSIAINRGIYENIQGKRGLRQGDPISPLL 8
           F+   L  L+   KF  W++ECL+T   S+ +N     +    +GLRQGDP+SP L
Sbjct: 502 FIVSALRALNVPEKFTCWILECLSTASFSVILNGHSAGHFWSSKGLRQGDPMSPYL 557


>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
          Length = 1214

 Score =  149 bits (377), Expect(2) = 1e-41
 Identities = 68/162 (41%), Positives = 107/162 (66%)
 Frame = -1

Query: 668 RNMLTQEFSAQEVKQALWAIEGDKVPSPDGYSSQFYKDAWDVVGADLTEGVLEFFKTGRM 489
           R +L  E S  ++K   +A+  +K P PDGY+S+F+K  W +VG  L   V EFF++GR+
Sbjct: 439 RQLLEAEVSEADIKSEFFALPSNKSPGPDGYTSEFFKKTWSIVGPSLIAAVQEFFRSGRL 498

Query: 488 AKGLNLTVITLIPKSSHAESVGDYKPISCCNTLYKVISKMLCNRLKKVLPDIISDNHSAF 309
               N T +T++PK  +A+ + +++PISCCN +YKVISK+L  RL+ +LP  IS + SAF
Sbjct: 499 LGQWNSTAVTMVPKKPNADRITEFRPISCCNAIYKVISKLLARRLENILPLWISPSQSAF 558

Query: 308 VAGRFIVQNFLICQGLVRLYNRKVATRSCLIKIDLRKAYDTV 183
           V GR + +N L+   LV+ + +   +   ++K+DLRKA+D+V
Sbjct: 559 VKGRLLTENVLLATELVQGFGQANISSRGVLKVDLRKAFDSV 600



 Score = 48.1 bits (113), Expect(2) = 1e-41
 Identities = 20/56 (35%), Positives = 34/56 (60%)
 Frame = -2

Query: 175 FVKEVLYELHFSYKFIKWLMECLTTPQHSIAINRGIYENIQGKRGLRQGDPISPLL 8
           F+ E L   +   +F+ W+ +C+T+   SI ++  +    +G +GLRQGDP+SP L
Sbjct: 604 FIIETLKAANAPPRFVNWIKQCITSTSFSINVSGSLCGYFKGSKGLRQGDPLSPSL 659


>gb|EAZ45328.1| hypothetical protein OsJ_29974 [Oryza sativa Japonica Group]
          Length = 469

 Score =  139 bits (351), Expect(2) = 1e-41
 Identities = 71/169 (42%), Positives = 103/169 (60%), Gaps = 3/169 (1%)
 Frame = -1

Query: 677 AEQRNMLTQEFSAQEVKQALWAIEGDKVPSPDGYSSQFYKDAWDVVGADLTEGVLEFFKT 498
           A++R +    FS +E+  AL+ I   K P PDG+ ++FY+  W ++ +D+   V EFF T
Sbjct: 101 ADRREIRIANFSDEEIADALFQIGPLKAPGPDGFPARFYQRNWGLIKSDVVRAVKEFFHT 160

Query: 497 GRMAKGLNLTVITLIPKSSHAESVGDYKPISCCNTLYKVISKMLCNRLKKVLPDIISDNH 318
           G M  G+N T I LIPK +    + +++PIS CN +YK++SK L NRL+ +L D+IS N 
Sbjct: 161 GIMPDGINATAIVLIPKVNQPMELKEFRPISLCNVIYKIVSKCLVNRLRPILDDLISQNQ 220

Query: 317 SAFVAGRFIVQNFLI---CQGLVRLYNRKVATRSCLIKIDLRKAYDTVD 180
           SAFV GR I  N L+   C   ++  N+     +C  K+DL KAYD VD
Sbjct: 221 SAFVPGRMITDNALLAFECFHSIQ-RNKSPGKAACAYKLDLSKAYDRVD 268



 Score = 58.2 bits (139), Expect(2) = 1e-41
 Identities = 22/58 (37%), Positives = 40/58 (68%)
 Frame = -2

Query: 175 FVKEVLYELHFSYKFIKWLMECLTTPQHSIAINRGIYENIQGKRGLRQGDPISPLLKL 2
           F+++ +Y+L F+++++ W+M CLT+ ++S+ +N  +       RGL QGDP+SP L L
Sbjct: 271 FLEQAMYKLGFTHRWVSWIMTCLTSMRYSVKLNGTLLSTFAPSRGLHQGDPLSPFLFL 328


>gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thaliana]
            gi|20197043|gb|AAM14892.1| putative reverse transcriptase
            [Arabidopsis thaliana]
          Length = 1412

 Score =  159 bits (403), Expect(2) = 7e-41
 Identities = 71/163 (43%), Positives = 113/163 (69%)
 Frame = -1

Query: 671  QRNMLTQEFSAQEVKQALWAIEGDKVPSPDGYSSQFYKDAWDVVGADLTEGVLEFFKTGR 492
            ++N+L  E +  EV +  ++I  +K P PDGY+ +F+++ W V+G ++T  +  FF  G 
Sbjct: 711  EQNLLVAEITEAEVMKVFFSIPLNKSPGPDGYTVEFFRETWSVIGQEVTMAIKSFFTYGF 770

Query: 491  MAKGLNLTVITLIPKSSHAESVGDYKPISCCNTLYKVISKMLCNRLKKVLPDIISDNHSA 312
            + KGLN T++ LIPK ++A+ + DY+PISCCN LYK ISK+L NRLK +LP+ I+ N SA
Sbjct: 771  LPKGLNSTILALIPKRTYAKEMKDYRPISCCNVLYKAISKLLANRLKCLLPEFIAPNQSA 830

Query: 311  FVAGRFIVQNFLICQGLVRLYNRKVATRSCLIKIDLRKAYDTV 183
            F++ R +++N L+   LV+ Y++   +  C +KIDL KA+D+V
Sbjct: 831  FISDRLLMENLLLASELVKDYHKDGLSPRCAMKIDLSKAFDSV 873



 Score = 35.8 bits (81), Expect(2) = 7e-41
 Identities = 20/57 (35%), Positives = 27/57 (47%)
 Frame = -2

Query: 178  PFVKEVLYELHFSYKFIKWLMECLTTPQHSIAINRGIYENIQGKRGLRQGDPISPLL 8
            PF+   L  L    KFI W+  C++T   S+ +N           GLRQG  +SP L
Sbjct: 876  PFLLNTLAALDIPEKFIHWINLCISTASFSVQVN-----------GLRQGCSLSPYL 921


>ref|NP_001175161.1| Os07g0417700 [Oryza sativa Japonica Group]
           gi|255677700|dbj|BAH93889.1| Os07g0417700 [Oryza sativa
           Japonica Group]
          Length = 1011

 Score =  134 bits (337), Expect(2) = 7e-41
 Identities = 72/177 (40%), Positives = 103/177 (58%), Gaps = 3/177 (1%)
 Frame = -1

Query: 701 HNLRPMDTAEQRNMLTQEFSAQEVKQALWAIEGDKVPSPDGYSSQFYKDAWDVVGADLTE 522
           H ++   T E    L +EFS +E+  A++ I   K P PDG+ ++FY+  W V+  D+  
Sbjct: 102 HLIQEKVTPEMNESLCREFSEEEIATAVFQIGPLKAPGPDGFPARFYERNWGVLKEDIVR 161

Query: 521 GVLEFFKTGRMAKGLNLTVITLIPKSSHAESVGDYKPISCCNTLYKVISKMLCNRLKKVL 342
            V  FF TG M  G+N T I LIPK      V D++PIS CN LYK +SK L NRL+ +L
Sbjct: 162 VVKTFFLTGVMPSGVNNTAIVLIPKIEQPMEVKDFRPISLCNVLYKFVSKCLVNRLRPIL 221

Query: 341 PDIISDNHSAFVAGRFIVQNFLI---CQGLVRLYNRKVATRSCLIKIDLRKAYDTVD 180
            +++S + SAFV GR I  N ++   C   ++  N+   + SC  K+DL KAY+ VD
Sbjct: 222 DELVSQSQSAFVPGRLITDNAILAFECFHSIQ-KNKNPNSSSCAYKLDLSKAYNRVD 277



 Score = 61.2 bits (147), Expect(2) = 7e-41
 Identities = 24/58 (41%), Positives = 41/58 (70%)
 Frame = -2

Query: 175 FVKEVLYELHFSYKFIKWLMECLTTPQHSIAINRGIYENIQGKRGLRQGDPISPLLKL 2
           F+++ +Y+L FS++++ W+MEC+T+ + S+  N  + +     RGLRQGDP+SP L L
Sbjct: 280 FLEQSMYKLGFSHRWVSWIMECITSVRFSVKFNGTLLDTFAPSRGLRQGDPLSPFLLL 337


>emb|CAE04660.2| OSJNBa0061G20.16 [Oryza sativa Japonica Group]
          Length = 1285

 Score =  137 bits (346), Expect(2) = 3e-40
 Identities = 71/170 (41%), Positives = 102/170 (60%), Gaps = 3/170 (1%)
 Frame = -1

Query: 680  TAEQRNMLTQEFSAQEVKQALWAIEGDKVPSPDGYSSQFYKDAWDVVGADLTEGVLEFFK 501
            T      L QEF  +E+ QA++ I   K P PDG+ ++FY+  W  + +D+   V  FF+
Sbjct: 969  TDAMNEKLCQEFKEEEIAQAIFQIGPLKSPGPDGFPARFYQRNWGTLKSDIILAVRNFFQ 1028

Query: 500  TGRMAKGLNLTVITLIPKSSHAESVGDYKPISCCNTLYKVISKMLCNRLKKVLPDIISDN 321
            +G M +G+N T I LIPK      + DY+PIS CN +YKV+SK L NRL+ +L D++S  
Sbjct: 1029 SGLMPEGVNDTAIVLIPKKDQPIDLKDYRPISLCNVVYKVVSKCLVNRLRPILDDLVSKE 1088

Query: 320  HSAFVAGRFIVQNFLI---CQGLVRLYNRKVATRSCLIKIDLRKAYDTVD 180
             SAF+ GR I  N L+   C   ++  N+K  + +C  K+DL KAYD VD
Sbjct: 1089 QSAFIQGRMITDNALLAFECFHSIQ-KNKKANSAACAYKLDLSKAYDRVD 1137



 Score = 55.5 bits (132), Expect(2) = 3e-40
 Identities = 23/58 (39%), Positives = 39/58 (67%)
 Frame = -2

Query: 175  FVKEVLYELHFSYKFIKWLMECLTTPQHSIAINRGIYENIQGKRGLRQGDPISPLLKL 2
            F++  L +L F+++++ W+M C+TT ++S+  N  +  +    RGLRQGDP+SP L L
Sbjct: 1140 FLELALNKLGFAHRWVSWIMSCVTTVRYSVKFNGTLLRSFAPTRGLRQGDPLSPFLFL 1197


>gb|EEE61581.1| hypothetical protein OsJ_15963 [Oryza sativa Japonica Group]
          Length = 1494

 Score =  144 bits (362), Expect(2) = 4e-40
 Identities = 74/173 (42%), Positives = 109/173 (63%), Gaps = 3/173 (1%)
 Frame = -1

Query: 689  PMDTAEQRNMLTQEFSAQEVKQALWAIEGDKVPSPDGYSSQFYKDAWDVVGADLTEGVLE 510
            P  T E   MLT+ F+ +E+  AL+ I   K P PDG+ ++F++  W V+  D+ EGV E
Sbjct: 666  PKITDEMNGMLTKPFTDEEISDALFQIGPLKAPGPDGFPARFFQRNWGVLKRDVIEGVRE 725

Query: 509  FFKTGRMAKGLNLTVITLIPKSSHAESVGDYKPISCCNTLYKVISKMLCNRLKKVLPDII 330
            FF+TG   +G+N TVI +IPK++    + D++P+S CN +YKV++K L NRL+ +L +II
Sbjct: 726  FFETGEWKEGMNDTVIVMIPKTNAPVEMKDFRPVSLCNVIYKVVAKCLVNRLRPLLQEII 785

Query: 329  SDNHSAFVAGRFIVQNFLI---CQGLVRLYNRKVATRSCLIKIDLRKAYDTVD 180
            S+  SAFV GR I  N L+   C   +    R+ +   C +K+DL KAYD VD
Sbjct: 786  SETQSAFVPGRMITDNALVAFECFHSIHKCTRE-SQDFCALKLDLSKAYDRVD 837



 Score = 48.9 bits (115), Expect(2) = 4e-40
 Identities = 22/58 (37%), Positives = 36/58 (62%)
 Frame = -2

Query: 175  FVKEVLYELHFSYKFIKWLMECLTTPQHSIAINRGIYENIQGKRGLRQGDPISPLLKL 2
            F+   L +L F   + KW+M C+T+ ++S+ +N  + E     RGLR+GDP++P L L
Sbjct: 840  FLDGALQKLGFGNIWRKWIMSCVTSVRYSVRLNGNMLEPFYPTRGLREGDPLNPYLFL 897