BLASTX nr result
ID: Atropa21_contig00031777
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Atropa21_contig00031777
(2295 letters)
Database: nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulga... 145 1e-89
emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga... 139 5e-70
ref|XP_006598323.1| PREDICTED: uncharacterized protein LOC102660... 104 2e-67
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc... 119 5e-65
gb|ABD33261.1| RNA-directed DNA polymerase (Reverse transcriptas... 152 2e-57
dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like ... 119 5e-54
emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-li... 119 5e-54
ref|XP_004240779.1| PREDICTED: uncharacterized protein LOC101256... 91 2e-51
ref|XP_004253295.1| PREDICTED: uncharacterized protein LOC101253... 126 1e-49
dbj|BAF00918.1| putative reverse transcriptase [Arabidopsis thal... 108 1e-49
gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana] 108 3e-49
gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thali... 113 4e-49
gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00... 110 4e-49
ref|XP_004247247.1| PREDICTED: uncharacterized protein LOC101256... 146 4e-49
ref|XP_006605023.1| PREDICTED: uncharacterized protein LOC102662... 94 7e-49
gb|AAC67331.1| putative non-LTR retroelement reverse transcripta... 118 5e-48
ref|XP_004253225.1| PREDICTED: uncharacterized protein LOC101268... 82 6e-48
dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ... 116 2e-47
dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana] 116 2e-47
ref|XP_006586520.1| PREDICTED: uncharacterized protein LOC102662... 98 3e-46
>emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1110
Score = 145 bits (365), Expect(4) = 1e-89
Identities = 65/127 (51%), Positives = 92/127 (72%)
Frame = +1
Query: 1915 NKKMFKAINCTSMTLIPKVPNPSSIKEF*PIKCCTMLYKIISKVLTKRLQQVINSVIYSN 2094
N +M + INC +TL+PKV + + +KEF PI CCT++YKIISK+LT R++ +I V+
Sbjct: 487 NSRMHRPINCIVVTLLPKVQHATRVKEFRPIACCTVIYKIISKMLTNRMKGIIGEVVNEA 546
Query: 2095 QTTFVPGRVITYNILLSHELVKGYTRKGLSTRCVLKINMQKAYDFLEWGFLEQGLVALNF 2274
Q+ F+PGR I NILL+ EL++GYTRK +S RC++K++++KAYD +EW FLE L F
Sbjct: 547 QSGFIPGRHIADNILLASELIRGYTRKHMSPRCIMKVDIRKAYDSVEWSFLETLLYEFGF 606
Query: 2275 PIEFVSW 2295
P FV W
Sbjct: 607 PSRFVGW 613
Score = 102 bits (255), Expect(4) = 1e-89
Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%)
Frame = +1
Query: 640 HNYNASGKGRI*VIWDSAIIDVTFIHTRDQFIHCLIDYFVQGIKMEFTSIYGLHTIETRK 819
+NY+ S + RI + W A ++VT HT++Q + C D Q K++ ++YGLHTI RK
Sbjct: 59 NNYSHSARERIWIGWRPAWVNVTLTHTQEQLMVC--DIQDQSHKLKMVAVYGLHTIADRK 116
Query: 820 DLWDKLETLELLVQHPWLVMEYFNAILRGEDRMNGNQIVDAEIKDFEQCLLNTGLTEMKD 999
LW L + Q P +++ FNA+ DR+ G + DAE +DF+Q LL + L E +
Sbjct: 117 SLWSGLLQC-VQQQDPMIIIGDFNAVCHSNDRLYGTLVTDAETEDFQQFLLQSNLIESRS 175
Query: 1000 I*RFFTWTN-----NHVLSKIDRALVNPS*LSRWPHLEVTVMDP 1116
+++W+N + VLS+ID+A VN L + + V + P
Sbjct: 176 TWSYYSWSNSSIGRDRVLSRIDKAYVNLVWLGMYAEVSVQYLPP 219
Score = 83.6 bits (205), Expect(4) = 1e-89
Identities = 43/147 (29%), Positives = 80/147 (54%)
Frame = +3
Query: 1122 SDHALMCVTMEHHQDQAARPSRFLNHLASHTDFMQYVREVWNKQVQGSPMEKVWKKLKFM 1301
SDH+ + + + Q +P +F+N +A +F++ V + WN ++ +W LK +
Sbjct: 222 SDHSPLLFNLMTGRPQGGKPFKFMNVMAEQGEFLETVEKAWNSVNGRFKLQAIWLNLKAV 281
Query: 1302 KGAMKELNQKEFSKVDLKIQIIRQHLSDIQQIFRSTYNDQLLYDREKQLKVDLEKWNLVE 1481
K +K++ ++ K++ +R L D+Q +ND + D K + DL W+ +E
Sbjct: 282 KRELKQMKTQKIGLAHEKVKNLRHQLQDLQSQDDFDHNDIMQTD-AKSIMNDLRHWSHIE 340
Query: 1482 ESILRQKSRVQCLELRNSNSAYFFASV 1562
+SIL+QKSR+ L+ ++NS FF +V
Sbjct: 341 DSILQQKSRITWLQQGDTNSKLFFTAV 367
Score = 71.2 bits (173), Expect(4) = 1e-89
Identities = 39/104 (37%), Positives = 60/104 (57%), Gaps = 1/104 (0%)
Frame = +2
Query: 1580 NHIKKLVSDSGRIMQSKNKVEKEITGFYKRLLRSSAAESPGTQPDVMSNGPILKRDQQLL 1759
N I L ++ GR++Q ++V++EI FYK+LL + A+ G + + G L +
Sbjct: 374 NRIDMLNTEDGRVIQDADEVQEEILEFYKKLLGTRASTLMGVDLNTVRGGKCLSAQAKES 433
Query: 1760 LITPM-SKEIQDTLKDISDLKSPGCDGFNTAFFKKAWPTIGDEV 1888
LI + S EI + L I + K+PG DGFN FFKK+W +I E+
Sbjct: 434 LIREVASTEIDEALAGIGNDKAPGLDGFNAYFFKKSWGSIKQEI 477
>emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1114
Score = 139 bits (351), Expect(3) = 5e-70
Identities = 68/127 (53%), Positives = 89/127 (70%)
Frame = +1
Query: 1915 NKKMFKAINCTSMTLIPKVPNPSSIKEF*PIKCCTMLYKIISKVLTKRLQQVINSVIYSN 2094
N M K INCT++TLIPK+ K++ PI CC+ LYKIISK+LTKRLQ VI V+
Sbjct: 490 NGFMHKPINCTAVTLIPKIDEAKHAKDYRPIACCSTLYKIISKILTKRLQAVITEVVDCA 549
Query: 2095 QTTFVPGRVITYNILLSHELVKGYTRKGLSTRCVLKINMQKAYDFLEWGFLEQGLVALNF 2274
QT F+P R I NILL+ EL++GY R+ +S RCV+K++++KAYD +EW FLE L L F
Sbjct: 550 QTGFIPERHIGDNILLATELIRGYNRRHVSPRCVIKVDIRKAYDSVEWVFLESMLKELGF 609
Query: 2275 PIEFVSW 2295
P F+ W
Sbjct: 610 PSMFIRW 616
Score = 105 bits (263), Expect(3) = 5e-70
Identities = 51/147 (34%), Positives = 87/147 (59%)
Frame = +3
Query: 1122 SDHALMCVTMEHHQDQAARPSRFLNHLASHTDFMQYVREVWNKQVQGSPMEKVWKKLKFM 1301
SDH+ + + D+ RP +FLN LA F++ V+E W M+ +W +L+ +
Sbjct: 225 SDHSPLIFNLATQHDEGGRPFKFLNFLADQNGFVEVVKEAWGSANHRFKMKNIWVRLQAV 284
Query: 1302 KGAMKELNQKEFSKVDLKIQIIRQHLSDIQQIFRSTYNDQLLYDREKQLKVDLEKWNLVE 1481
K A+K + K+FSK +++ +R+ L+ +Q + + + L + EK L L KW+ ++
Sbjct: 285 KRALKSFHSKKFSKAHCQVEELRRKLAAVQALPEVSQVSE-LQEEEKDLIAQLRKWSTID 343
Query: 1482 ESILRQKSRVQCLELRNSNSAYFFASV 1562
ESIL+QKSR+Q L L +SNS +FF ++
Sbjct: 344 ESILKQKSRIQWLSLGDSNSKFFFTAI 370
Score = 70.1 bits (170), Expect(3) = 5e-70
Identities = 38/104 (36%), Positives = 57/104 (54%), Gaps = 1/104 (0%)
Frame = +2
Query: 1580 NHIKKLVSDSGRIMQSKNKVEKEITGFYKRLLRSSAAESPGTQPDVMSNGPILKRDQQLL 1759
N I L +D G + +++ EI FY+RLL +S+++ V+ G L
Sbjct: 377 NKIVLLQNDRGDQLTENTEIQNEICNFYRRLLGTSSSQLEAIDLHVVRVGAKLSATSCAQ 436
Query: 1760 LITPMS-KEIQDTLKDISDLKSPGCDGFNTAFFKKAWPTIGDEV 1888
L+ P++ +EI L DI D K+PG DGFN+ FFKK+W I E+
Sbjct: 437 LVQPITIQEIDQALADIDDTKAPGLDGFNSVFFKKSWLVIKQEI 480
Score = 85.5 bits (210), Expect(2) = 3e-15
Identities = 53/178 (29%), Positives = 92/178 (51%), Gaps = 12/178 (6%)
Frame = +1
Query: 640 HNYNASGKGRI*VIWDSAIIDVTFIHTRDQFIHCLI--DYFVQGIKMEFTSIYGLHTIET 813
+NY S +GRI V W + +++ + +Q I + Y + KM ++YGLHTI
Sbjct: 59 NNYACSPRGRIWVGWLNNDVNINVLSVTEQVITMEVKNSYGLNMFKM--AAVYGLHTIAD 116
Query: 814 RKDLWDKLETLELLVQHPWLVMEYFNAILRGEDRMNGNQIVDAEIKDFEQCLLNTGLTEM 993
RK LW++L + P +++ +NA+ +DR+NGN + +AE D +L L E
Sbjct: 117 RKVLWEELYNFVSVCHEPCILIGDYNAVYSAQDRLNGNDVSEAETSDLRSFVLKAQLLEA 176
Query: 994 KDI*RFFTWTN-----NHVLSKIDRALVNPS*LSRWP-----HLEVTVMDPSSLIMLL 1137
F++W N + + S+ID++ VN + ++++P + E + D S LI L
Sbjct: 177 PTTGLFYSWNNKSIGADRISSRIDKSFVNVAWINQYPDVVVEYREAGISDHSPLIFNL 234
Score = 25.4 bits (54), Expect(2) = 3e-15
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = +2
Query: 467 MKIATWNVRRFNKMHKHKAFLXXXXXXXXXXXXXVEYKVQQNKAKQI*RK 616
MKI TWNVR N K K E +V+Q + +I +K
Sbjct: 1 MKITTWNVRGLNDPIKVKEVKHFLHSQKISLCSLFETRVRQQNSGKIQKK 50
>ref|XP_006598323.1| PREDICTED: uncharacterized protein LOC102660513 [Glycine max]
Length = 543
Score = 104 bits (260), Expect(4) = 2e-67
Identities = 60/163 (36%), Positives = 87/163 (53%), Gaps = 5/163 (3%)
Frame = +1
Query: 643 NYNASGKGRI*VIWDSAIIDVTFIHTRDQFIHCLIDYFVQGIKMEF-TSIYGLHTIETRK 819
NY GRI V WD I+D+ ++ Q IHC + Y G M++ T+IYG + +E
Sbjct: 27 NYVKHNNGRIWVYWDDNIVDIQEVNCTAQLIHCKV-YDATGYFMQWLTAIYGFNYLEQCT 85
Query: 820 DLWDKLETLELLVQHPWLVMEYFNAILRGEDRMNGNQIVDAEIKDFEQCLLNTGLTEMKD 999
DLW LE + Q PW ++ FN +L+ DR+ G + + E KD + NTGL EM
Sbjct: 86 DLWHDLEAINKTQQGPWCLIGDFNNVLKTNDRVGGKMVCEKEYKDLRTMMDNTGLAEMDS 145
Query: 1000 I*RFFTWTN----NHVLSKIDRALVNPS*LSRWPHLEVTVMDP 1116
++TW+N N + S+IDR L N S+ +L +T M P
Sbjct: 146 KGDYYTWSNKQSENIIYSRIDRILGNTEWFSKNLNLSLTNMTP 188
Score = 88.6 bits (218), Expect(4) = 2e-67
Identities = 41/85 (48%), Positives = 60/85 (70%)
Frame = +1
Query: 1921 KMFKAINCTSMTLIPKVPNPSSIKEF*PIKCCTMLYKIISKVLTKRLQQVINSVIYSNQT 2100
KM++ IN + + LIPK +++ PI CCT +YK+ISKVLT RL +VI S+++ +Q
Sbjct: 459 KMYEPINTSLVILIPKNQEAKYARDYRPISCCTTIYKVISKVLTTRLSRVIKSIVHQSQA 518
Query: 2101 TFVPGRVITYNILLSHELVKGYTRK 2175
FVPG+ I ILL++EL++GY RK
Sbjct: 519 AFVPGQKIHDQILLAYELIQGYERK 543
Score = 67.4 bits (163), Expect(4) = 2e-67
Identities = 38/114 (33%), Positives = 56/114 (49%), Gaps = 1/114 (0%)
Frame = +2
Query: 1586 IKKLVSDSGRIMQSKNKVEKEITGFYKRLLRSSAAESPGTQPDVMSNGPILKRDQQLLLI 1765
IKKL + G + ++ ++E EI FY L+ ++M G L DQ+ LI
Sbjct: 346 IKKLYMNDGNFVTTQKEIEDEIMRFYGDLMGREEPNLDSVDINIMRKGCQLNFDQRKYLI 405
Query: 1766 TPMS-KEIQDTLKDISDLKSPGCDGFNTAFFKKAWPTIGDEVADVVTHILQTKK 1924
++ +EI LK I DLK+PG DG+ FFK AW I + D + + K
Sbjct: 406 GRITDEEIDKALKSIGDLKAPGIDGYGAKFFKDAWSIIKSDFTDAIREFFEKGK 459
Score = 66.6 bits (161), Expect(4) = 2e-67
Identities = 40/148 (27%), Positives = 77/148 (52%), Gaps = 1/148 (0%)
Frame = +3
Query: 1122 SDHALMCVTMEHHQDQAARPSRFLNHLASHTDFMQYVREVWNKQVQGSP-MEKVWKKLKF 1298
SDHA++C+ + + ++ N ++ +F + V WN +G P M+ +W KLK
Sbjct: 191 SDHAMLCLRDDSVPVKRKARFKYANCVSGMDNFTETVANSWNSARRGGPPMKMLWHKLKK 250
Query: 1299 MKGAMKELNQKEFSKVDLKIQIIRQHLSDIQQIFRSTYNDQLLYDREKQLKVDLEKWNLV 1478
++ + L+ K + +K+Q R+ L+ Q ++ DR + KW +
Sbjct: 251 LQPVINNLS-KPLIGIKVKLQEAREKLTHAQMELTLDRLNKDKIDRTNDCTEAVIKWTEM 309
Query: 1479 EESILRQKSRVQCLELRNSNSAYFFASV 1562
EE +L+Q+++++ L L + N+AYF AS+
Sbjct: 310 EEQMLQQRAKIRWLRLGDGNNAYFHASL 337
>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
Length = 1214
Score = 119 bits (299), Expect(5) = 5e-65
Identities = 54/119 (45%), Positives = 85/119 (71%)
Frame = +1
Query: 1939 NCTSMTLIPKVPNPSSIKEF*PIKCCTMLYKIISKVLTKRLQQVINSVIYSNQTTFVPGR 2118
N T++T++PK PN I EF PI CC +YK+ISK+L +RL+ ++ I +Q+ FV GR
Sbjct: 503 NSTAVTMVPKKPNADRITEFRPISCCNAIYKVISKLLARRLENILPLWISPSQSAFVKGR 562
Query: 2119 VITYNILLSHELVKGYTRKGLSTRCVLKINMQKAYDFLEWGFLEQGLVALNFPIEFVSW 2295
++T N+LL+ ELV+G+ + +S+R VLK++++KA+D + WGF+ + L A N P FV+W
Sbjct: 563 LLTENVLLATELVQGFGQANISSRGVLKVDLRKAFDSVGWGFIIETLKAANAPPRFVNW 621
Score = 77.8 bits (190), Expect(5) = 5e-65
Identities = 48/156 (30%), Positives = 76/156 (48%), Gaps = 7/156 (4%)
Frame = +1
Query: 643 NYNASGKGRI*VIWDSAIIDVTFIHTRDQFIHCLIDYFVQGIKMEFTSIYGLHTIETRKD 822
NY + GRI V+WD A+ +VT + DQ I C + + T +Y ++ R+
Sbjct: 61 NYEFAALGRIWVVWDPAV-EVTVLSKSDQTISCTVKLPHISTEFVVTFVYAVNCRYGRRR 119
Query: 823 LWDKLETL---ELLVQHPWLVMEYFNAILRGEDRMNGNQIVDAEIKDFEQCLLNTGLTEM 993
LW +LE L + PW+++ FN L D G + +++F +CLL + ++++
Sbjct: 120 LWSELELLAANQTTSDKPWIILGDFNQSLDPVDASTGGSRITRGMEEFRECLLTSNISDL 179
Query: 994 KDI*RFFTWTNNH----VLSKIDRALVNPS*LSRWP 1089
+TW NN + KIDR LVN S L P
Sbjct: 180 PFRGNHYTWWNNQENNPIAKKIDRILVNDSWLIASP 215
Score = 73.2 bits (178), Expect(5) = 5e-65
Identities = 47/154 (30%), Positives = 79/154 (51%), Gaps = 5/154 (3%)
Frame = +3
Query: 1104 SHGS----QFSDHALMCVTMEHHQDQAARPSRFLNHLASHTDFMQYVREVWNK-QVQGSP 1268
S+GS +FSDH CV + + +P + N L H +F++ +R W++ QGS
Sbjct: 217 SYGSFCAMEFSDHCPSCVNISNQSGGRNKPFKLSNFLMHHPEFIEKIRVTWDRLAYQGSA 276
Query: 1269 MEKVWKKLKFMKGAMKELNQKEFSKVDLKIQIIRQHLSDIQQIFRSTYNDQLLYDREKQL 1448
M + KK KF+KG ++ N++ +S ++ ++ Q+L Q + + L EK+
Sbjct: 277 MFTLSKKSKFLKGTIRTFNREHYSGLEKRVVQAAQNLKTCQNNLLAAPSSYLA-GLEKEA 335
Query: 1449 KVDLEKWNLVEESILRQKSRVQCLELRNSNSAYF 1550
+ L EE L QKSRV L+ +SN+ +F
Sbjct: 336 HRSWAELALAEERFLCQKSRVLWLKCGDSNTTFF 369
Score = 45.8 bits (107), Expect(5) = 5e-65
Identities = 28/116 (24%), Positives = 55/116 (47%), Gaps = 3/116 (2%)
Frame = +2
Query: 1580 NHIKKLVSDSGRIMQSKNKVEKEITGFYKRLLRSSA---AESPGTQPDVMSNGPILKRDQ 1750
N I L+ +GR +++ ++++ F+K L SS+ + +Q + ++ + +
Sbjct: 380 NEIHYLLDQTGRRIENTDELQTHCVDFFKELFGSSSHLISAEGISQINSLTRFKCDENTR 439
Query: 1751 QLLLITPMSKEIQDTLKDISDLKSPGCDGFNTAFFKKAWPTIGDEVADVVTHILQT 1918
QLL +I+ + KSPG DG+ + FFKK W +G + V ++
Sbjct: 440 QLLEAEVSEADIKSEFFALPSNKSPGPDGYTSEFFKKTWSIVGPSLIAAVQEFFRS 495
Score = 23.5 bits (49), Expect(5) = 5e-65
Identities = 10/42 (23%), Positives = 21/42 (50%)
Frame = +2
Query: 479 TWNVRRFNKMHKHKAFLXXXXXXXXXXXXXVEYKVQQNKAKQ 604
+WNVR FN + + F +E +V++++A++
Sbjct: 6 SWNVRGFNNSVRRRNFRKWFKLSKALFGSILETRVKEHRARR 47
>gb|ABD33261.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
truncatula]
Length = 402
Score = 152 bits (385), Expect(3) = 2e-57
Identities = 71/124 (57%), Positives = 97/124 (78%)
Frame = +1
Query: 1924 MFKAINCTSMTLIPKVPNPSSIKEF*PIKCCTMLYKIISKVLTKRLQQVINSVIYSNQTT 2103
M K INCT MTL+PK N +S+K F PI CC+++YKIISK+LT R+Q V+NSV+ NQ+
Sbjct: 173 MPKIINCTYMTLLPKEVNVTSVKNFRPIACCSVIYKIISKILTSRMQGVLNSVVSENQSA 232
Query: 2104 FVPGRVITYNILLSHELVKGYTRKGLSTRCVLKINMQKAYDFLEWGFLEQGLVALNFPIE 2283
FV GRVI NI+LSHELVK Y+RKG+S RC++KI++QKAY+ +EW F++ ++ L F +
Sbjct: 233 FVKGRVIFDNIILSHELVKSYSRKGISPRCMVKIDLQKAYNSVEWPFIKHLMLELGFSYK 292
Query: 2284 FVSW 2295
FV+W
Sbjct: 293 FVNW 296
Score = 81.3 bits (199), Expect(3) = 2e-57
Identities = 41/114 (35%), Positives = 66/114 (57%), Gaps = 1/114 (0%)
Frame = +2
Query: 1580 NHIKKLVSDSGRIMQSKNKVEKEITGFYKRLLRSSAAESPGTQPDVMSNGPILKRDQQLL 1759
N+IK L+++ G + N +++EI GFY +L+ SS P +V+ GP+L + QQ L
Sbjct: 57 NNIKFLITEDGTRIDKHNLIKEEIRGFYLKLMGSSVDSLPMVDKNVVKRGPMLSQHQQDL 116
Query: 1760 LITPMSK-EIQDTLKDISDLKSPGCDGFNTAFFKKAWPTIGDEVADVVTHILQT 1918
L + + E+++ L + K+PG DG+N FFK +W IGD V D + +T
Sbjct: 117 LCSKFTAVEVKNVLFSMDSSKAPGIDGYNVHFFKCSWNIIGDSVIDAILDFFKT 170
Score = 39.7 bits (91), Expect(3) = 2e-57
Identities = 19/44 (43%), Positives = 27/44 (61%)
Frame = +3
Query: 1425 LYDREKQLKVDLEKWNLVEESILRQKSRVQCLELRNSNSAYFFA 1556
L + EK LEKW+ +EE I QKSR ++L +SN+ +F A
Sbjct: 5 LIEAEKICLSSLEKWSTIEEKIWMQKSRANWIQLGDSNTKFFHA 48
>dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
thaliana]
Length = 893
Score = 119 bits (297), Expect(4) = 5e-54
Identities = 53/125 (42%), Positives = 87/125 (69%)
Frame = +1
Query: 1921 KMFKAINCTSMTLIPKVPNPSSIKEF*PIKCCTMLYKIISKVLTKRLQQVINSVIYSNQT 2100
++ K N T++ LIPK+ N S + +F PI C LYK+I+K+LT RL++++N VI +Q+
Sbjct: 499 QLLKQWNATTLVLIPKITNSSKMTDFRPISCLNTLYKVIAKLLTSRLKKLLNEVISPSQS 558
Query: 2101 TFVPGRVITYNILLSHELVKGYTRKGLSTRCVLKINMQKAYDFLEWGFLEQGLVALNFPI 2280
F+PGR+++ N+LL+ E+V GY K +S+R +LK++++KA+D + W F+ AL P
Sbjct: 559 AFLPGRLLSENVLLATEIVHGYNTKNISSRGMLKVDLRKAFDSVRWDFIISAFRALAVPE 618
Query: 2281 EFVSW 2295
+FV W
Sbjct: 619 KFVCW 623
Score = 65.1 bits (157), Expect(4) = 5e-54
Identities = 54/169 (31%), Positives = 80/169 (47%), Gaps = 13/169 (7%)
Frame = +1
Query: 598 KTDMKKVTPG*E*HHNYNASGKGRI*VIWDSAIIDVTFIHTRDQFIHCLI------DYFV 759
K + + PG NY S G+I V+WD ++ V I Q I C + +FV
Sbjct: 47 KKFISNLLPGWSFVENYEFSVLGKIWVLWDPSV-KVVVIGRSLQMITCELLLPDSPSWFV 105
Query: 760 QGIKMEFTSIYGLHTIETRKDLWDKLETLEL---LVQHPWLVMEYFNAILRGEDRMNGNQ 930
I +Y + TRK+LW++L L L +V W+V+ FN IL E +N N
Sbjct: 106 VSI------VYASNEEGTRKELWNELVQLALSPVVVGRSWIVLGDFNQILNPESAINAN- 158
Query: 931 IVDAEIKDFEQCLLNTGLTEMKDI*RFFTWTN----NHVLSKIDRALVN 1065
+ +I+ F CLL++ L ++ +TW N + KIDR LVN
Sbjct: 159 -IGRKIRAFRSCLLDSDLYDLVYKGSSYTWWNKCSSRPLAKKIDRILVN 206
Score = 62.0 bits (149), Expect(4) = 5e-54
Identities = 45/148 (30%), Positives = 77/148 (52%), Gaps = 4/148 (2%)
Frame = +3
Query: 1119 FSDHALMCVTMEHHQDQAARPSRFLNHLASHTDFMQYVREVW-NKQVQGSPMEKVWKKLK 1295
FSDH+ V ++ +A RP RF N+ + DF+Q +RE W + V GS M +V KKLK
Sbjct: 225 FSDHSSCEVVLDPAVLKAKRPFRFFNYFLHNPDFLQLIRENWYSCNVSGSAMYRVSKKLK 284
Query: 1296 FMKGAMKELNQKEFSKVDLKIQIIRQHLSDIQQIFRSTYNDQLLYDREKQLKVDLEKWNL 1475
+K + +++ +S ++ ++ + Q+I T + + +L+ KW +
Sbjct: 285 HLKLPICCFSRENYSDIEKRVSEAHAIVLHRQRI---TLTNPSVVHATLELEA-TRKWQI 340
Query: 1476 V---EESILRQKSRVQCLELRNSNSAYF 1550
+ EES QKS + L ++N+AYF
Sbjct: 341 LAKAEESFFCQKSSISWLYEGDNNTAYF 368
Score = 36.2 bits (82), Expect(4) = 5e-54
Identities = 31/129 (24%), Positives = 53/129 (41%), Gaps = 16/129 (12%)
Frame = +2
Query: 1580 NHIKKLVSDSGRIMQSKNKVEKEIT----GFYKRLLRSSAAESPGTQPDVMSNGPILKRD 1747
N I L+ D G ++++ +++ I F++ LL E+ Q D+
Sbjct: 379 NTINFLIDDFGERIETQQGIKEGIKEHSCNFFESLLCGVEGENSLAQSDM---------- 428
Query: 1748 QQLLLITPMSKEIQDTLKDISDL------------KSPGCDGFNTAFFKKAWPTIGDEVA 1891
LL +I D + SDL K+ G DG+++ FFK W +G EV
Sbjct: 429 NLLLSFRCSVDQINDLERSFSDLDIQEAFFSLPRNKASGPDGYSSEFFKGVWFVVGPEVT 488
Query: 1892 DVVTHILQT 1918
+ V ++
Sbjct: 489 EAVQEFFRS 497
>emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 893
Score = 119 bits (297), Expect(4) = 5e-54
Identities = 53/125 (42%), Positives = 87/125 (69%)
Frame = +1
Query: 1921 KMFKAINCTSMTLIPKVPNPSSIKEF*PIKCCTMLYKIISKVLTKRLQQVINSVIYSNQT 2100
++ K N T++ LIPK+ N S + +F PI C LYK+I+K+LT RL++++N VI +Q+
Sbjct: 499 QLLKQWNATTLVLIPKITNSSKMTDFRPISCLNTLYKVIAKLLTSRLKKLLNEVISPSQS 558
Query: 2101 TFVPGRVITYNILLSHELVKGYTRKGLSTRCVLKINMQKAYDFLEWGFLEQGLVALNFPI 2280
F+PGR+++ N+LL+ E+V GY K +S+R +LK++++KA+D + W F+ AL P
Sbjct: 559 AFLPGRLLSENVLLATEIVHGYNTKNISSRGMLKVDLRKAFDSVRWDFIISAFRALAVPE 618
Query: 2281 EFVSW 2295
+FV W
Sbjct: 619 KFVCW 623
Score = 65.1 bits (157), Expect(4) = 5e-54
Identities = 54/169 (31%), Positives = 80/169 (47%), Gaps = 13/169 (7%)
Frame = +1
Query: 598 KTDMKKVTPG*E*HHNYNASGKGRI*VIWDSAIIDVTFIHTRDQFIHCLI------DYFV 759
K + + PG NY S G+I V+WD ++ V I Q I C + +FV
Sbjct: 47 KKFISNLLPGWSFVENYEFSVLGKIWVLWDPSV-KVVVIGRSLQMITCELLLPDSPSWFV 105
Query: 760 QGIKMEFTSIYGLHTIETRKDLWDKLETLEL---LVQHPWLVMEYFNAILRGEDRMNGNQ 930
I +Y + TRK+LW++L L L +V W+V+ FN IL E +N N
Sbjct: 106 VSI------VYASNEEGTRKELWNELVQLALSPVVVGRSWIVLGDFNQILNPESAINAN- 158
Query: 931 IVDAEIKDFEQCLLNTGLTEMKDI*RFFTWTN----NHVLSKIDRALVN 1065
+ +I+ F CLL++ L ++ +TW N + KIDR LVN
Sbjct: 159 -IGRKIRAFRSCLLDSDLYDLVYKGSSYTWWNKCSSRPLAKKIDRILVN 206
Score = 62.0 bits (149), Expect(4) = 5e-54
Identities = 45/148 (30%), Positives = 77/148 (52%), Gaps = 4/148 (2%)
Frame = +3
Query: 1119 FSDHALMCVTMEHHQDQAARPSRFLNHLASHTDFMQYVREVW-NKQVQGSPMEKVWKKLK 1295
FSDH+ V ++ +A RP RF N+ + DF+Q +RE W + V GS M +V KKLK
Sbjct: 225 FSDHSSCEVVLDPAVLKAKRPFRFFNYFLHNPDFLQLIRENWYSCNVSGSAMYRVSKKLK 284
Query: 1296 FMKGAMKELNQKEFSKVDLKIQIIRQHLSDIQQIFRSTYNDQLLYDREKQLKVDLEKWNL 1475
+K + +++ +S ++ ++ + Q+I T + + +L+ KW +
Sbjct: 285 HLKLPICCFSRENYSDIEKRVSEAHAIVLHRQRI---TLTNPSVVHATLELEA-TRKWQI 340
Query: 1476 V---EESILRQKSRVQCLELRNSNSAYF 1550
+ EES QKS + L ++N+AYF
Sbjct: 341 LAKAEESFFCQKSSISWLYEGDNNTAYF 368
Score = 36.2 bits (82), Expect(4) = 5e-54
Identities = 31/129 (24%), Positives = 53/129 (41%), Gaps = 16/129 (12%)
Frame = +2
Query: 1580 NHIKKLVSDSGRIMQSKNKVEKEIT----GFYKRLLRSSAAESPGTQPDVMSNGPILKRD 1747
N I L+ D G ++++ +++ I F++ LL E+ Q D+
Sbjct: 379 NTINFLIDDFGERIETQQGIKEGIKEHSCNFFESLLCGVEGENSLAQSDM---------- 428
Query: 1748 QQLLLITPMSKEIQDTLKDISDL------------KSPGCDGFNTAFFKKAWPTIGDEVA 1891
LL +I D + SDL K+ G DG+++ FFK W +G EV
Sbjct: 429 NLLLSFRCSVDQINDLERSFSDLDIQEAFFSLPRNKASGPDGYSSEFFKGVWFVVGPEVT 488
Query: 1892 DVVTHILQT 1918
+ V ++
Sbjct: 489 EAVQEFFRS 497
>ref|XP_004240779.1| PREDICTED: uncharacterized protein LOC101256493 [Solanum
lycopersicum]
Length = 441
Score = 90.5 bits (223), Expect(4) = 2e-51
Identities = 52/143 (36%), Positives = 84/143 (58%), Gaps = 1/143 (0%)
Frame = +3
Query: 1122 SDHALMCVTMEHHQDQAARPS-RFLNHLASHTDFMQYVREVWNKQVQGSPMEKVWKKLKF 1298
SDH+ M + + H +Q R S +F N H F+ V +VW ++ ++KVW KLK
Sbjct: 130 SDHSTMQLVL-HQSNQHVRASFKFFNIWTEHDLFLDLVEKVWKQEKDRDAIKKVWYKLKA 188
Query: 1299 MKGAMKELNQKEFSKVDLKIQIIRQHLSDIQQIFRSTYNDQLLYDREKQLKVDLEKWNLV 1478
++ +K+LN+KEF + +I+ R L DIQ D+L+ +EK+L LEK +L+
Sbjct: 189 LQPVLKQLNRKEFKYISNQIEEARNELIDIQNQLCHQAKDELV-TKEKELLTKLEKLSLI 247
Query: 1479 EESILRQKSRVQCLELRNSNSAY 1547
+ES LRQK R + ++L ++N+ Y
Sbjct: 248 KESALRQKVRAKWIKLGDANNKY 270
Score = 68.6 bits (166), Expect(4) = 2e-51
Identities = 39/115 (33%), Positives = 58/115 (50%), Gaps = 1/115 (0%)
Frame = +2
Query: 1583 HIKKLVSDSGRIMQSKNKVEKEITGFYKRLLRSSAAESPGTQPDVMSNGPILKRDQQL-L 1759
+I+ L+S GR + +++ E F K L+ ++A VM GP+L R ++ L
Sbjct: 283 NIRILMSLDGRKLSEPQEIQDEFVLFDKSLMGTAANNLSAINVQVMKRGPVLSRQHRIQL 342
Query: 1760 LITPMSKEIQDTLKDISDLKSPGCDGFNTAFFKKAWPTIGDEVADVVTHILQTKK 1924
T +EI + LK I + K+PG DG+N FFK W I +V D V T K
Sbjct: 343 CATITDQEIVEALKSIGNEKAPGIDGYNALFFKHTWKIIEHDVIDAVKSFFTTGK 397
Score = 63.9 bits (154), Expect(4) = 2e-51
Identities = 28/49 (57%), Positives = 37/49 (75%)
Frame = +1
Query: 1903 SHITNKKMFKAINCTSMTLIPKVPNPSSIKEF*PIKCCTMLYKIISKVL 2049
S T K+FK NCT +T+IPKV +P ++KE+ PI CC +LYKIISKV+
Sbjct: 391 SFFTTGKLFKPFNCTLVTVIPKVHSPKNVKEYRPIACCRVLYKIISKVI 439
Score = 50.4 bits (119), Expect(4) = 2e-51
Identities = 40/175 (22%), Positives = 63/175 (36%), Gaps = 5/175 (2%)
Frame = +1
Query: 607 MKKVTPG*E*HHNYNASGKGRI*VIWDSAIIDVTFIHTRDQFIHCLIDYFVQGIKMEFTS 786
M + PG +NY + GRI +IWD + D I Q IHC + +G
Sbjct: 1 MNGIAPGWNRLNNYKDAANGRIWIIWDDSCYDGKLITNTAQMIHCQVKERSKG------- 53
Query: 787 IYGLHTIETRKDLWDKLETLELLVQHPWLVMEYFNAILRGEDRMNGNQIVDAEIKDFEQC 966
D + G + + EIKDF C
Sbjct: 54 -----------------------------------------DTLAGAPVNENEIKDFADC 72
Query: 967 LLNTGLTEMKDI*RFFTWTNN-----HVLSKIDRALVNPS*LSRWPHLEVTVMDP 1116
+ G+ E++ ++TW+N V +IDRA N + +W H+ + +P
Sbjct: 73 VKAMGIHELQWKGSYYTWSNKQIGNARVSRRIDRAFGNDEWMDKWGHVILEYGNP 127
>ref|XP_004253295.1| PREDICTED: uncharacterized protein LOC101253072 [Solanum
lycopersicum]
Length = 383
Score = 126 bits (317), Expect(2) = 1e-49
Identities = 64/176 (36%), Positives = 101/176 (57%), Gaps = 5/176 (2%)
Frame = +1
Query: 607 MKKVTPG*E*HHNYNASGKGRI*VIWDSAIIDVTFIHTRDQFIHCLIDYFVQGIKMEFTS 786
++ + PG + HNY + GRI VIWD +V I + Q +HC ++ +G + +
Sbjct: 37 LRGIAPGWKALHNYEDNANGRIWVIWDDNWYEVKKITSSTQMVHCQVNERSKGYQFILSV 96
Query: 787 IYGLHTIETRKDLWDKLETLELLVQHPWLVMEYFNAILRGEDRMNGNQIVDAEIKDFEQC 966
+YGL+T E RK LW ++ETL + PWLV+ FNA+L +DR+ G + EIKDFE+C
Sbjct: 97 VYGLNTAEQRKSLWKEMETLAKGITQPWLVVGDFNAVLYAKDRLAGIPVAINEIKDFEEC 156
Query: 967 LLNTGLTEMKDI*RFFTWTNN-----HVLSKIDRALVNPS*LSRWPHLEVTVMDPS 1119
+ + G+ E++ ++TW N + S+IDRA N + +W H+ V +PS
Sbjct: 157 VRDIGVNELQWTGSYYTWNNKQCGMYRISSRIDRAFGNDEWMDKWGHVMVEYGNPS 212
Score = 99.8 bits (247), Expect(2) = 1e-49
Identities = 50/143 (34%), Positives = 87/143 (60%)
Frame = +3
Query: 1122 SDHALMCVTMEHHQDQAARPSRFLNHLASHTDFMQYVREVWNKQVQGSPMEKVWKKLKFM 1301
SDH+ M +T++ Q +F N H FM+ V W KQ M++VW KL+ +
Sbjct: 214 SDHSSMMLTLQKTQQYVKCSFKFFNVWTEHERFMEIVENAWKKQYGYDTMKQVWCKLRDL 273
Query: 1302 KGAMKELNQKEFSKVDLKIQIIRQHLSDIQQIFRSTYNDQLLYDREKQLKVDLEKWNLVE 1481
+ +++LN+KEF + +I R+ +++IQ+ ++L+ EK++ + LEKW+L+E
Sbjct: 274 QYRLQQLNRKEFKYIGKQIDQARREVANIQKQLNVQATNELIVG-EKEMLIKLEKWSLME 332
Query: 1482 ESILRQKSRVQCLELRNSNSAYF 1550
ES LRQKSR++ ++L ++N+ YF
Sbjct: 333 ESALRQKSRIKWIQLGDANNKYF 355
>dbj|BAF00918.1| putative reverse transcriptase [Arabidopsis thaliana]
Length = 910
Score = 108 bits (270), Expect(5) = 1e-49
Identities = 47/122 (38%), Positives = 80/122 (65%)
Frame = +1
Query: 1930 KAINCTSMTLIPKVPNPSSIKEF*PIKCCTMLYKIISKVLTKRLQQVINSVIYSNQTTFV 2109
+ N T++TLIPKV + +F P+ CCT +YK+I++++++RL+ I+ + +NQ F+
Sbjct: 501 RGFNATAITLIPKVTGADRLTQFRPVACCTTIYKVITRIISRRLKLFIDQAVQANQVGFI 560
Query: 2110 PGRVITYNILLSHELVKGYTRKGLSTRCVLKINMQKAYDFLEWGFLEQGLVALNFPIEFV 2289
GR++ N+LL+ ELV + G +TR L++++ KAYD + W FL L AL+ P+ F+
Sbjct: 561 KGRLLCENVLLASELVDNFEADGETTRGCLQVDISKAYDNVNWEFLINILKALDLPLVFI 620
Query: 2290 SW 2295
W
Sbjct: 621 HW 622
Score = 69.3 bits (168), Expect(5) = 1e-49
Identities = 55/176 (31%), Positives = 87/176 (49%), Gaps = 11/176 (6%)
Frame = +1
Query: 622 PG*E*HHNYNASGKGRI*VIWDSAIIDVTFIHTRDQFIHCLIDY--FVQGIKMEFTSIYG 795
PG NY S GRI ++WD +I + F T DQ + C I +Q + F +YG
Sbjct: 53 PGWRMDSNYCCSELGRIWIVWDPSISVLVFKRT-DQIMFCSIKIPSLLQSFAVAF--VYG 109
Query: 796 LHTIETRKDLWDKLETLEL---LVQHPWLVMEYFNAILRGEDRMNGNQ--IVDAEIKDFE 960
++ R+ LW+ + L L PWL++ FN I + + NQ + ++D +
Sbjct: 110 RNSELDRRSLWEDILVLSRTSPLSVTPWLLLGDFNQIAAASEHYSINQSLLNLRGMEDLQ 169
Query: 961 QCLLNTGLTEMKDI*RFFTWTN----NHVLSKIDRALVNPS*LSRWPHLEVTVMDP 1116
CL ++ L+++ FFTW+N N +L K+DRAL N + +P + V DP
Sbjct: 170 CCLRDSQLSDLPSRGVFFTWSNHQQDNPILRKLDRALANGEWFAVFPS-ALAVFDP 224
Score = 52.0 bits (123), Expect(5) = 1e-49
Identities = 37/148 (25%), Positives = 70/148 (47%), Gaps = 1/148 (0%)
Frame = +3
Query: 1122 SDHALMCVTMEHHQDQAARPSRFLNHLASHTDFMQYVREVWNKQ-VQGSPMEKVWKKLKF 1298
SDHA + +++ + + ++ + L+SH ++ + W + GS M + + LK
Sbjct: 228 SDHAPCIILIDNQPPPSKKSFKYFSFLSSHPSYLAALSTAWEANTLVGSHMFSLRQHLKV 287
Query: 1299 MKGAMKELNQKEFSKVDLKIQIIRQHLSDIQQIFRSTYNDQLLYDREKQLKVDLEKWNLV 1478
K + LN+ FS + + L DIQ ++ +D L + RE + +
Sbjct: 288 AKLCCRTLNRLRFSNIQQRTAQSLTRLEDIQVELLTSPSDTL-FRREHVARKQWIFFAAA 346
Query: 1479 EESILRQKSRVQCLELRNSNSAYFFASV 1562
ES RQKSR++ L ++N+ +F +V
Sbjct: 347 LESFFRQKSRIRWLHEGDANTRFFHRAV 374
Score = 35.4 bits (80), Expect(5) = 1e-49
Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 3/110 (2%)
Frame = +2
Query: 1580 NHIKKLVSDSGRIMQSKNKVEKEITGFYKRLLRSSAAESPGTQPDVMSNGPILKRDQQL- 1756
N IK L D G +++ ++++ + +Y LL + + + + D L
Sbjct: 381 NLIKFLRGDDGFRVENVDQIKGMLIAYYSHLLGIPSENVTPFSVEKIKGLLPFRCDSFLA 440
Query: 1757 --LLITPMSKEIQDTLKDISDLKSPGCDGFNTAFFKKAWPTIGDEVADVV 1900
L P +EI L + K+PG DGF FF +AW + V +
Sbjct: 441 SQLTTIPSEEEITQVLFSMPRNKAPGPDGFPVEFFIEAWAIVKSSVVAAI 490
Score = 21.9 bits (45), Expect(5) = 1e-49
Identities = 10/47 (21%), Positives = 17/47 (36%)
Frame = +2
Query: 467 MKIATWNVRRFNKMHKHKAFLXXXXXXXXXXXXXVEYKVQQNKAKQI 607
MK+ WN+R N ++ + +E V Q A +
Sbjct: 1 MKVFCWNIRGLNSRNRQRVVRSWIASNNLLVGCFLETHVAQENANSV 47
>gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana]
Length = 1161
Score = 108 bits (270), Expect(4) = 3e-49
Identities = 47/122 (38%), Positives = 80/122 (65%)
Frame = +1
Query: 1930 KAINCTSMTLIPKVPNPSSIKEF*PIKCCTMLYKIISKVLTKRLQQVINSVIYSNQTTFV 2109
+ N T++TLIPKV + +F P+ CCT +YK+I++++++RL+ I+ + +NQ F+
Sbjct: 544 RGFNATAITLIPKVTGADRLTQFRPVACCTTIYKVITRIISRRLKLFIDQAVQANQVGFI 603
Query: 2110 PGRVITYNILLSHELVKGYTRKGLSTRCVLKINMQKAYDFLEWGFLEQGLVALNFPIEFV 2289
GR++ N+LL+ ELV + G +TR L++++ KAYD + W FL L AL+ P+ F+
Sbjct: 604 KGRLLCENVLLASELVDNFEADGETTRGCLQVDISKAYDNVNWEFLINILKALDLPLVFI 663
Query: 2290 SW 2295
W
Sbjct: 664 HW 665
Score = 69.3 bits (168), Expect(4) = 3e-49
Identities = 55/176 (31%), Positives = 87/176 (49%), Gaps = 11/176 (6%)
Frame = +1
Query: 622 PG*E*HHNYNASGKGRI*VIWDSAIIDVTFIHTRDQFIHCLIDY--FVQGIKMEFTSIYG 795
PG NY S GRI ++WD +I + F T DQ + C I +Q + F +YG
Sbjct: 96 PGWRMDSNYCCSELGRIWIVWDPSISVLVFKRT-DQIMFCSIKIPSLLQSFAVAF--VYG 152
Query: 796 LHTIETRKDLWDKLETLEL---LVQHPWLVMEYFNAILRGEDRMNGNQ--IVDAEIKDFE 960
++ R+ LW+ + L L PWL++ FN I + + NQ + ++D +
Sbjct: 153 RNSELDRRSLWEDILVLSRTSPLSVTPWLLLGDFNQIAAASEHYSINQSLLNLRGMEDLQ 212
Query: 961 QCLLNTGLTEMKDI*RFFTWTN----NHVLSKIDRALVNPS*LSRWPHLEVTVMDP 1116
CL ++ L+++ FFTW+N N +L K+DRAL N + +P + V DP
Sbjct: 213 CCLRDSQLSDLPSRGVFFTWSNHQQDNPILRKLDRALANGEWFAVFPS-ALAVFDP 267
Score = 52.8 bits (125), Expect(4) = 3e-49
Identities = 37/148 (25%), Positives = 71/148 (47%), Gaps = 1/148 (0%)
Frame = +3
Query: 1122 SDHALMCVTMEHHQDQAARPSRFLNHLASHTDFMQYVREVWNKQ-VQGSPMEKVWKKLKF 1298
SDHA + +++ + + ++ + L+SH ++ + W + + GS M + + LK
Sbjct: 271 SDHAPCIILIDNQPPPSKKSFKYFSFLSSHPSYLAALSTAWEENTLVGSHMFSLRQHLKV 330
Query: 1299 MKGAMKELNQKEFSKVDLKIQIIRQHLSDIQQIFRSTYNDQLLYDREKQLKVDLEKWNLV 1478
K + LN+ FS + + L DIQ ++ +D L + RE + +
Sbjct: 331 AKLCCRTLNRLRFSNIQQRTAQSLTRLEDIQVELLTSPSDTL-FRREHVARKQWIFFAAA 389
Query: 1479 EESILRQKSRVQCLELRNSNSAYFFASV 1562
ES RQKSR++ L ++N+ +F +V
Sbjct: 390 LESFFRQKSRIRWLHEGDANTRFFHRAV 417
Score = 35.4 bits (80), Expect(4) = 3e-49
Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 3/110 (2%)
Frame = +2
Query: 1580 NHIKKLVSDSGRIMQSKNKVEKEITGFYKRLLRSSAAESPGTQPDVMSNGPILKRDQQL- 1756
N IK L D G +++ ++++ + +Y LL + + + + D L
Sbjct: 424 NLIKFLRGDDGFRVENVDQIKGMLIAYYSHLLGIPSENVTPFSVEKIKGLLPFRCDSFLA 483
Query: 1757 --LLITPMSKEIQDTLKDISDLKSPGCDGFNTAFFKKAWPTIGDEVADVV 1900
L P +EI L + K+PG DGF FF +AW + V +
Sbjct: 484 SQLTTIPSEEEITQVLFSMPRNKAPGPDGFPVEFFIEAWAIVKSSVVAAI 533
>gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thaliana]
gi|20197043|gb|AAM14892.1| putative reverse transcriptase
[Arabidopsis thaliana]
Length = 1412
Score = 113 bits (282), Expect(4) = 4e-49
Identities = 53/122 (43%), Positives = 79/122 (64%)
Frame = +1
Query: 1930 KAINCTSMTLIPKVPNPSSIKEF*PIKCCTMLYKIISKVLTKRLQQVINSVIYSNQTTFV 2109
K +N T + LIPK +K++ PI CC +LYK ISK+L RL+ ++ I NQ+ F+
Sbjct: 773 KGLNSTILALIPKRTYAKEMKDYRPISCCNVLYKAISKLLANRLKCLLPEFIAPNQSAFI 832
Query: 2110 PGRVITYNILLSHELVKGYTRKGLSTRCVLKINMQKAYDFLEWGFLEQGLVALNFPIEFV 2289
R++ N+LL+ ELVK Y + GLS RC +KI++ KA+D ++W FL L AL+ P +F+
Sbjct: 833 SDRLLMENLLLASELVKDYHKDGLSPRCAMKIDLSKAFDSVQWPFLLNTLAALDIPEKFI 892
Query: 2290 SW 2295
W
Sbjct: 893 HW 894
Score = 70.1 bits (170), Expect(4) = 4e-49
Identities = 48/159 (30%), Positives = 76/159 (47%), Gaps = 9/159 (5%)
Frame = +1
Query: 643 NYNASGKGRI*VIWDSAIIDVTFIHTRDQFIHCLIDYFVQGIKMEFTSIYGLHTIETRKD 822
NY + GRI V+W S++ + I Q I CL+ ++ + IY + +E RK
Sbjct: 362 NYEFNRLGRIWVVWSSSV-QLQVIFKSSQMIVCLVRVEHYDVEFICSFIYASNFVEERKK 420
Query: 823 LWDKLETLELLV---QHPWLVMEYFNAILRGEDRMN--GNQIVDAEIKDFEQCLLNTGLT 987
LW L L+ V PWL+ FN L+ E+ + + +V ++DF+ + L
Sbjct: 421 LWQDLHNLQNSVAFRNKPWLLFGDFNETLKMEEHSSYAVSPMVTPGMRDFQIVVRYCSLE 480
Query: 988 EMKDI*RFFTWTNNH----VLSKIDRALVNPS*LSRWPH 1092
+M+ FTW N + K+DR L+NP S +PH
Sbjct: 481 DMRTHGPLFTWGNKRNEGLICKKLDRVLLNPEYNSAYPH 519
Score = 45.1 bits (105), Expect(4) = 4e-49
Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 5/108 (4%)
Frame = +2
Query: 1580 NHIKKLVSDSGRIMQSKNKVEKEITGFYKRLLRSSAAESPGTQPDVMSNGPILK-----R 1744
N I +++ G +++ ++ E F+ LL S ++ G D + IL+
Sbjct: 653 NAIHEVMDPQGTRPPNQDDIKIEAVRFFSDLLSSQPSDFTGISVDELKG--ILQYRYSLH 710
Query: 1745 DQQLLLITPMSKEIQDTLKDISDLKSPGCDGFNTAFFKKAWPTIGDEV 1888
+Q LL+ E+ I KSPG DG+ FF++ W IG EV
Sbjct: 711 EQNLLVAEITEAEVMKVFFSIPLNKSPGPDGYTVEFFRETWSVIGQEV 758
Score = 37.4 bits (85), Expect(4) = 4e-49
Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 4/101 (3%)
Frame = +3
Query: 1179 PSRFLNHLASHTDFMQYVREVWNKQVQ----GSPMEKVWKKLKFMKGAMKELNQKEFSKV 1346
P +F N +A+H +FM V + W + S + + KKLK +K +K+L++ S +
Sbjct: 549 PFKFTNVIAAHPEFMPKVEDFWKNTTELFPSTSTLFRFSKKLKELKPILKDLSRNNLSDL 608
Query: 1347 DLKIQIIRQHLSDIQQIFRSTYNDQLLYDREKQLKVDLEKW 1469
+ + L Q +T N + D + E+W
Sbjct: 609 TRRATYAYEELCRCQTKSLTTLNPHDIVDE----SLAFERW 645
>gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00078 [Arabidopsis
thaliana]
Length = 1253
Score = 110 bits (274), Expect(4) = 4e-49
Identities = 53/132 (40%), Positives = 84/132 (63%), Gaps = 4/132 (3%)
Frame = +1
Query: 1912 TNKKMFKAINCTSMTLIPKVPNPSSIKEF*PIKCCTM----LYKIISKVLTKRLQQVINS 2079
T+ + K N T++ LIPK+ N S + +F PI C LYK+I+++LT RLQ +++
Sbjct: 444 TSSVLLKQWNATTLVLIPKITNASKMNDFRPISCNDFGPITLYKVIARLLTNRLQCLLSQ 503
Query: 2080 VIYSNQTTFVPGRVITYNILLSHELVKGYTRKGLSTRCVLKINMQKAYDFLEWGFLEQGL 2259
VI Q+ F+PGR + N+LL+ ELV+GY R+ + R +LK++++KA+D + W F+ L
Sbjct: 504 VISPFQSAFLPGRFLAENVLLATELVQGYNRQNIDPRGMLKVDLRKAFDSIRWDFIISAL 563
Query: 2260 VALNFPIEFVSW 2295
A+ P FV W
Sbjct: 564 KAIGIPDRFVYW 575
Score = 62.4 bits (150), Expect(4) = 4e-49
Identities = 45/148 (30%), Positives = 76/148 (51%), Gaps = 4/148 (2%)
Frame = +3
Query: 1119 FSDHALMCVTMEHHQDQAARPSRFLNHLASHTDFMQYVREVW-NKQVQGSPMEKVWKKLK 1295
FSDHA V + + RP RF N L + DF+ V E+W + V GS M K+ KKLK
Sbjct: 177 FSDHASCGVIINPLMHREKRPFRFYNFLLQNPDFISLVGELWYSINVVGSSMFKMSKKLK 236
Query: 1296 FMKGAMKELNQKEFSKVDLKIQIIRQHLSDIQQIFRSTYNDQLLYDREKQLKVDLEKWNL 1475
+K ++ + + FS ++ +++ + Q T +D + + +++ KW +
Sbjct: 237 ALKNPIRTFSMENFSNLEKRVKEAHNLVLYRQ---NKTLSDPTIPNAALEMEAQ-RKWLI 292
Query: 1476 V---EESILRQKSRVQCLELRNSNSAYF 1550
+ EES Q+SRV + +SN++YF
Sbjct: 293 LVKAEESFFCQRSRVTWMGEGDSNTSYF 320
Score = 53.5 bits (127), Expect(4) = 4e-49
Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 8/118 (6%)
Frame = +1
Query: 787 IYGLHTIETRKDLWDKLETLELLVQ---HPWLVMEYFNAILRGEDRMNGNQI-VDAEIKD 954
+Y + TRK+LW++L L + + PW+++ FN +L + + V+ +K
Sbjct: 58 VYAANEAITRKELWEELLLLSVSLSGNGKPWIMLGDFNQVLCPAEHSQATSLNVNRRMKV 117
Query: 955 FEQCLLNTGLTEMKDI*RFFTWTNNH----VLSKIDRALVNPS*LSRWPHLEVTVMDP 1116
F CL L ++ FTW N V K+DR LVN S SR+P +P
Sbjct: 118 FRDCLFEAELCDLVFKGNTFTWWNKSATRPVAKKLDRILVNESWCSRFPSAYAVFGEP 175
Score = 39.7 bits (91), Expect(4) = 4e-49
Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 2/110 (1%)
Frame = +2
Query: 1580 NHIKKLVSDSGRIMQSKNKVEKEITGFYKRLLRSSAAESPGTQPDVMSNGPI-LKRDQQL 1756
N I ++ D+G + ++ +++ ++ LL Q D P DQ+
Sbjct: 331 NTIHIIIDDNGVKIDTQLGIKEHCIEYFSNLLGGEVGPPMLIQEDFDLLLPFRCSHDQKK 390
Query: 1757 LLITPMSKE-IQDTLKDISDLKSPGCDGFNTAFFKKAWPTIGDEVADVVT 1903
L S++ I+ K+ G DGF FFK+ W IG EV D V+
Sbjct: 391 ELAMSFSRQDIKSAFFSFPSNKTSGPDGFPVEFFKETWSVIGTEVTDAVS 440
>ref|XP_004247247.1| PREDICTED: uncharacterized protein LOC101256917 [Solanum
lycopersicum]
Length = 421
Score = 146 bits (368), Expect(3) = 4e-49
Identities = 69/125 (55%), Positives = 92/125 (73%)
Frame = +1
Query: 1921 KMFKAINCTSMTLIPKVPNPSSIKEF*PIKCCTMLYKIISKVLTKRLQQVINSVIYSNQT 2100
K+FK NCT ++LIPKV +P ++KE+ I CCT+LYKIISKV+T R+ VI++VI +Q
Sbjct: 157 KLFKPFNCTLVSLIPKVQSPKNVKEYRTITCCTVLYKIISKVITNRMHDVIHNVICDSQV 216
Query: 2101 TFVPGRVITYNILLSHELVKGYTRKGLSTRCVLKINMQKAYDFLEWGFLEQGLVALNFPI 2280
F+ GR I+ NILL+HELV YTRK +S R +LKI++QK YD +EW FL+Q +V L FP
Sbjct: 217 GFILGRKISENILLAHELVNSYTRKNISPRSMLKIDLQKVYDSVEWPFLKQVMVGLGFPD 276
Query: 2281 EFVSW 2295
F W
Sbjct: 277 MFTQW 281
Score = 50.1 bits (118), Expect(3) = 4e-49
Identities = 22/58 (37%), Positives = 43/58 (74%)
Frame = +3
Query: 1377 LSDIQQIFRSTYNDQLLYDREKQLKVDLEKWNLVEESILRQKSRVQCLELRNSNSAYF 1550
L++I++ + ND+L+ +E++L + LEKW+++EES RQK+R + ++L ++N+ YF
Sbjct: 3 LAEIEEQLYNKENDKLI-TKEEELPIKLEKWSMIEESAQRQKARAKWIQLGDANNKYF 59
Score = 48.9 bits (115), Expect(3) = 4e-49
Identities = 29/114 (25%), Positives = 51/114 (44%)
Frame = +2
Query: 1583 HIKKLVSDSGRIMQSKNKVEKEITGFYKRLLRSSAAESPGTQPDVMSNGPILKRDQQLLL 1762
HI+ ++S GR++ +++ E+ FYK L+ +SA
Sbjct: 71 HIRNILSIHGRMLYEPQEIQDEVVLFYKSLMGTSAVTE---------------------- 108
Query: 1763 ITPMSKEIQDTLKDISDLKSPGCDGFNTAFFKKAWPTIGDEVADVVTHILQTKK 1924
++I L+ I + K+PG DG+N FFK W I +++ +VV + K
Sbjct: 109 -----EKIFAALQSIGNDKAPGIDGYNAFFFKYTWKIIKNDIIEVVQSFFKPGK 157
>ref|XP_006605023.1| PREDICTED: uncharacterized protein LOC102662229 [Glycine max]
Length = 451
Score = 94.4 bits (233), Expect(4) = 7e-49
Identities = 49/146 (33%), Positives = 80/146 (54%), Gaps = 4/146 (2%)
Frame = +1
Query: 643 NYNASGKGRI*VIWDSAIIDVTFIHTRDQFIHCLIDYFVQGIKMEFTSIYGLHTIETRKD 822
NYN GRI + W+ A I VT I + DQ +HC + + T +Y + +E R+
Sbjct: 59 NYNHYPNGRIWLNWNDANIHVTEIISTDQMVHCEVKDMQGNLSFCLTVVYAQNKLEHRRK 118
Query: 823 LWDKLETLELLVQHPWLVMEYFNAILRGEDRMNGNQIVDAEIKDFEQCLLNTGLTEMKDI 1002
LW +E ++ Q PW ++ FN +LR +DR+ GN++ +AE KD + ++ GL E++
Sbjct: 119 LWHDIEQIQH--QGPWYIVGDFNNVLRTKDRIGGNRVTEAEYKDLQDMIIRVGLFEVESK 176
Query: 1003 *RFFTWTNNH----VLSKIDRALVNP 1068
++TW N H + S+I+R P
Sbjct: 177 GDYYTWFNKHSVDPIYSRINRMETPP 202
Score = 77.8 bits (190), Expect(4) = 7e-49
Identities = 45/129 (34%), Positives = 76/129 (58%), Gaps = 3/129 (2%)
Frame = +3
Query: 1185 RFLNHLASHTDFMQYVREVWNKQVQGSPMEKVWKKLKFMKGAMKELNQKEFSKVDLKIQI 1364
+FLN + F V + WN V GSPM VWKKLK ++ + L+ K+F+ L++
Sbjct: 209 KFLNCVTKLPGFDDAVAQSWNSPVDGSPMVVVWKKLKRLRKVLGTLS-KQFAHTKLQLAK 267
Query: 1365 IRQHLSDIQQIFRSTYNDQLLYDREKQLKVDLE---KWNLVEESILRQKSRVQCLELRNS 1535
R+ L++ Q S ND++ ++ ++K+ E +WN ++E IL+Q+S++ L+L +
Sbjct: 268 AREDLAEAQD---SLVNDKINKEKIDKVKMCTETVIRWNEIDEEILQQRSKLDWLKLGDG 324
Query: 1536 NSAYFFASV 1562
N AYF AS+
Sbjct: 325 NKAYFHASI 333
Score = 60.1 bits (144), Expect(4) = 7e-49
Identities = 36/107 (33%), Positives = 54/107 (50%), Gaps = 1/107 (0%)
Frame = +2
Query: 1583 HIKKLVSDSGRIMQSKNKVEKEITGFYKRLLRSSAAESPGTQPDVMSNGPILKRDQQLLL 1762
HI KL D ++Q ++++E E+ FYK L+ + M G +K +Q +L
Sbjct: 341 HIDKLELDDSSVVQDQDEIEAEVLRFYKSLMGDNTKTIQAIDIVAMRVGTQVKPEQVDML 400
Query: 1763 ITPMS-KEIQDTLKDISDLKSPGCDGFNTAFFKKAWPTIGDEVADVV 1900
+ ++ +EI L I DLKSPG DG+ FK +W TI V V
Sbjct: 401 TSQVTDQEIFKALNSIRDLKSPGIDGYGAKSFKASWNTIRTYVTAAV 447
Score = 32.7 bits (73), Expect(4) = 7e-49
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = +2
Query: 473 IATWNVRRFNKMHKHKAFLXXXXXXXXXXXXXVEYKVQQNKAKQI*RKLHL 625
+ +WNVR NK KHK +E +V++ KAK I KL+L
Sbjct: 2 LVSWNVRGLNKAGKHKEISSHLLSIRADINILLETRVKKEKAKVIRGKLNL 52
>gb|AAC67331.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1449
Score = 118 bits (296), Expect(4) = 5e-48
Identities = 54/122 (44%), Positives = 82/122 (67%)
Frame = +1
Query: 1930 KAINCTSMTLIPKVPNPSSIKEF*PIKCCTMLYKIISKVLTKRLQQVINSVIYSNQTTFV 2109
K +N T + LIPK +K++ PI CC ++YK+ISK++ RL+ V+ + I NQ+ FV
Sbjct: 922 KGVNTTILALIPKKLEAKEMKDYRPISCCNVIYKVISKIIANRLKHVLPNFIAGNQSAFV 981
Query: 2110 PGRVITYNILLSHELVKGYTRKGLSTRCVLKINMQKAYDFLEWGFLEQGLVALNFPIEFV 2289
R++ N+LL+ ELVK Y + +S RC +KI++ KA+D ++W FL+ L AL+FP EFV
Sbjct: 982 KDRLLIENLLLATELVKDYHKDTISGRCAIKIDISKAFDSVQWSFLKNVLSALDFPPEFV 1041
Query: 2290 SW 2295
W
Sbjct: 1042 HW 1043
Score = 58.9 bits (141), Expect(4) = 5e-48
Identities = 39/150 (26%), Positives = 70/150 (46%), Gaps = 9/150 (6%)
Frame = +1
Query: 643 NYNASGKGRI*VIWDSAIIDVTFIHTRDQFIHCLIDYFVQGIKMEFTSIYGLHTIETRKD 822
NY + +GR+ V+W + F + DQ I C + Q + ++ +Y + E RK
Sbjct: 475 NYEFNRRGRLWVVWRENVRFTPF-YKSDQLITCSVKLESQEEEFFYSFVYASNFAEERKI 533
Query: 823 LWDKLET---LELLVQHPWLVMEYFNAILRGED--RMNGNQIVDAEIKDFEQCLLNTGLT 987
LW+ L ++ PW++ FN IL ++ RM + V + ++DF+ + +
Sbjct: 534 LWNDLRDHMDSPIIRDKPWIIFGDFNEILDMDEHSRMEDHPAVTSGMRDFQSLVNYCSFS 593
Query: 988 EMKDI*RFFTWTNNH----VLSKIDRALVN 1065
++ FTW N + K+DR +VN
Sbjct: 594 DLASHGPLFTWCNKRDNDPIWKKLDRVMVN 623
Score = 47.0 bits (110), Expect(4) = 5e-48
Identities = 26/105 (24%), Positives = 54/105 (51%), Gaps = 3/105 (2%)
Frame = +2
Query: 1580 NHIKKLVSDSGRIMQSKNKVEKEITGFYKRLLRSSAAESPGTQPDVMSN---GPILKRDQ 1750
N I+++ + G +K+ ++ E F++ L+ + G + +++ ++
Sbjct: 802 NSIREIQKEDGSTATTKDDIKNETERFFQEFLQLIPNDYEGITVEKLTSLLPYHCSPAEK 861
Query: 1751 QLLLITPMSKEIQDTLKDISDLKSPGCDGFNTAFFKKAWPTIGDE 1885
+L + +KEI+ L + + KSPG DG+ + F+K+AW IG E
Sbjct: 862 DMLTASVSAKEIRGALFSMPNDKSPGPDGYTSEFYKRAWDIIGAE 906
Score = 37.4 bits (85), Expect(4) = 5e-48
Identities = 33/150 (22%), Positives = 67/150 (44%), Gaps = 7/150 (4%)
Frame = +3
Query: 1122 SDHALMCVTMEHH---QDQAARPSRFLNHLASHTDFMQYVREVWNK----QVQGSPMEKV 1280
SDH + + + Q + +P +F+N +A +F V W + + S + +
Sbjct: 643 SDHLRCRINLNMNSGAQVRGNKPFKFVNAVADMEEFKPLVENFWRETEPIHMSTSSLFRF 702
Query: 1281 WKKLKFMKGAMKELNQKEFSKVDLKIQIIRQHLSDIQQIFRSTYNDQLLYDREKQLKVDL 1460
KKLK +K ++ L +++ + + + L QQ S Q + E + V
Sbjct: 703 TKKLKALKPKLRGLAKEKMGNLVKRTREAYLSLCQAQQ-SNSQNPSQRAMEIESEAYVRW 761
Query: 1461 EKWNLVEESILRQKSRVQCLELRNSNSAYF 1550
++ +EE L+Q S++ L++ + N+ F
Sbjct: 762 DRIASIEEKYLKQVSKLHWLKVGDKNNKTF 791
>ref|XP_004253225.1| PREDICTED: uncharacterized protein LOC101268668 [Solanum
lycopersicum]
Length = 390
Score = 81.6 bits (200), Expect(4) = 6e-48
Identities = 45/113 (39%), Positives = 58/113 (51%)
Frame = +1
Query: 1912 TNKKMFKAINCTSMTLIPKVPNPSSIKEF*PIKCCTMLYKIISKVLTKRLQQVINSVIYS 2091
T K+FK NCT ++LIPKV NP +
Sbjct: 315 TKGKLFKTFNCTLVSLIPKVQNPQT----------------------------------- 339
Query: 2092 NQTTFVPGRVITYNILLSHELVKGYTRKGLSTRCVLKINMQKAYDFLEWGFLE 2250
F+PGR I NI+L+HELVK YTRK +S R +LKI++Q+AYD +EW FLE
Sbjct: 340 --DGFIPGRKIAENIILAHELVKSYTRKNISPRSMLKIDLQQAYDLVEWSFLE 390
Score = 75.9 bits (185), Expect(4) = 6e-48
Identities = 38/98 (38%), Positives = 59/98 (60%), Gaps = 5/98 (5%)
Frame = +1
Query: 814 RKDLWDKLETLELLVQHPWLVMEYFNAILRGEDRMNGNQIVDAEIKDFEQCLLNTGLTEM 993
R+ LW++L+ L V PW+++ FNAIL +DR++ + EIKDFE+C+ + G+TE+
Sbjct: 2 RRSLWNELKMLTHSVSEPWIIIGDFNAILSPKDRLDRVLVTLNEIKDFEECVKDMGVTEI 61
Query: 994 KDI*RFFTWTNNHV-----LSKIDRALVNPS*LSRWPH 1092
++TWTN V S+IDRA N + +W H
Sbjct: 62 HWKGNYYTWTNKQVGAARIASRIDRAFGNDCWMDKWGH 99
Score = 57.4 bits (137), Expect(4) = 6e-48
Identities = 40/147 (27%), Positives = 68/147 (46%)
Frame = +3
Query: 1122 SDHALMCVTMEHHQDQAARPSRFLNHLASHTDFMQYVREVWNKQVQGSPMEKVWKKLKFM 1301
S+H+ M + ++ +F N H FM+ V VW KQ GS
Sbjct: 110 SNHSPMHLLLQKSYHHIRVGFKFFNVWVEHESFMEMVDTVW-KQEYGSQ----------- 157
Query: 1302 KGAMKELNQKEFSKVDLKIQIIRQHLSDIQQIFRSTYNDQLLYDREKQLKVDLEKWNLVE 1481
KI+ R L ++Q+ + D L+ ++K+L + LEKW+++E
Sbjct: 158 -----------------KIEKARSELEELQEKLYNQAQDDLV-TKDKELLIQLEKWSMLE 199
Query: 1482 ESILRQKSRVQCLELRNSNSAYFFASV 1562
E+ LRQK+R + + L ++N+ YF A +
Sbjct: 200 ENALRQKARARWITLGDTNNKYFSAVI 226
Score = 47.0 bits (110), Expect(4) = 6e-48
Identities = 27/114 (23%), Positives = 45/114 (39%)
Frame = +2
Query: 1583 HIKKLVSDSGRIMQSKNKVEKEITGFYKRLLRSSAAESPGTQPDVMSNGPILKRDQQLLL 1762
HI+ ++S G+++ ++++E FYK L+ SSA + P + N
Sbjct: 234 HIRSILSLDGKMLYEPQEIQEEFVKFYKSLMGSSAGKLPAINAQSIGND----------- 282
Query: 1763 ITPMSKEIQDTLKDISDLKSPGCDGFNTAFFKKAWPTIGDEVADVVTHILQTKK 1924
K+PG DG+N FFK W + +V T+ K
Sbjct: 283 ------------------KAPGIDGYNELFFKHTWKIVKKDVITAATNFFTKGK 318
>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
thaliana]
Length = 1072
Score = 116 bits (291), Expect(4) = 2e-47
Identities = 54/125 (43%), Positives = 85/125 (68%)
Frame = +1
Query: 1921 KMFKAINCTSMTLIPKVPNPSSIKEF*PIKCCTMLYKIISKVLTKRLQQVINSVIYSNQT 2100
++ K N T++ LIPK N +I EF PI C LYK+ISK+LT RLQ ++++VI +Q+
Sbjct: 358 QLLKQWNATTLVLIPKTSNACTISEFRPISCLNTLYKVISKLLTSRLQGLLSAVIGHSQS 417
Query: 2101 TFVPGRVITYNILLSHELVKGYTRKGLSTRCVLKINMQKAYDFLEWGFLEQGLVALNFPI 2280
F+PGR + N+LL+ E+V GY R +S R +LK++++KA+D ++W F+ L AL P
Sbjct: 418 AFLPGRSLAENVLLATEMVHGYNRLNISPRGMLKVDLKKAFDSVKWEFVTAALRALAIPE 477
Query: 2281 EFVSW 2295
+++W
Sbjct: 478 RYINW 482
Score = 68.2 bits (165), Expect(4) = 2e-47
Identities = 52/161 (32%), Positives = 80/161 (49%), Gaps = 8/161 (4%)
Frame = +3
Query: 1104 SHGS----QFSDHALMCVTMEHHQDQAARPSRFLNHLASHTDFMQYVREVW-NKQVQGSP 1268
SHG FSDH V +E + A RP +F N L + DF+ V + W + V GS
Sbjct: 79 SHGLFGNLDFSDHVSCGVVLEANGISAKRPFKFFNFLLKNEDFLNVVMDNWFSTNVVGSS 138
Query: 1269 MEKVWKKLKFMKGAMKELNQKEFSKVDLKIQIIRQHLSDIQQIFRSTYNDQLLYDREKQL 1448
M +V KKLK MK +K+ ++ +S ++L+ + + L Q + T + + + +L
Sbjct: 139 MYRVSKKLKAMKKPIKDFSRLNYSGIELRTKEAHELLITCQNL---TLANPSVSNAALEL 195
Query: 1449 KVDLEKWNLV---EESILRQKSRVQCLELRNSNSAYFFASV 1562
+ KW L+ EES Q+SRV +SN+ YF V
Sbjct: 196 EAQ-RKWVLLSCAEESFFHQRSRVSWFAEGDSNTHYFHRMV 235
Score = 40.8 bits (94), Expect(4) = 2e-47
Identities = 32/107 (29%), Positives = 48/107 (44%), Gaps = 4/107 (3%)
Frame = +2
Query: 1580 NHIKKLVSDSGRIMQSKNKVEKEITGFYKRLLRSSAAESPGTQPDVMSNGPILKRDQQ-- 1753
N I LV +G ++ S+ + +Y+RLL S ESP + N + R Q
Sbjct: 242 NTINSLVDSNGLLIDSQQGILDHCVTYYERLLGS--IESPFSMEQEDMNLLLTYRCSQDQ 299
Query: 1754 --LLLITPMSKEIQDTLKDISDLKSPGCDGFNTAFFKKAWPTIGDEV 1888
L + EI+ K + K+ G DG++ FF+ W IG EV
Sbjct: 300 CSELEKSFTDDEIKAAFKSLPRNKTSGPDGYSVEFFRDTWSIIGPEV 346
Score = 34.7 bits (78), Expect(4) = 2e-47
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Frame = +1
Query: 886 FNAILRGEDRMNGNQI-VDAEIKDFEQCLLNTGLTEMKDI*RFFTWTNNH----VLSKID 1050
FN +L ++ N + +D ++DF CL L+++ FTW N + K+D
Sbjct: 5 FNQVLLPQEHSNPPSLNIDRRMRDFGSCLSEMELSDLVFKGNSFTWWNKSSIRPIAKKLD 64
Query: 1051 RALVNPS*LSRWP 1089
R L N S + +P
Sbjct: 65 RILANDSWCNLYP 77
>dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
Length = 1072
Score = 116 bits (291), Expect(4) = 2e-47
Identities = 54/125 (43%), Positives = 85/125 (68%)
Frame = +1
Query: 1921 KMFKAINCTSMTLIPKVPNPSSIKEF*PIKCCTMLYKIISKVLTKRLQQVINSVIYSNQT 2100
++ K N T++ LIPK N +I EF PI C LYK+ISK+LT RLQ ++++VI +Q+
Sbjct: 358 QLLKQWNATTLVLIPKTSNACTISEFRPISCLNTLYKVISKLLTSRLQGLLSAVIGHSQS 417
Query: 2101 TFVPGRVITYNILLSHELVKGYTRKGLSTRCVLKINMQKAYDFLEWGFLEQGLVALNFPI 2280
F+PGR + N+LL+ E+V GY R +S R +LK++++KA+D ++W F+ L AL P
Sbjct: 418 AFLPGRSLAENVLLATEMVHGYNRLNISPRGMLKVDLKKAFDSVKWEFVTAALRALAIPE 477
Query: 2281 EFVSW 2295
+++W
Sbjct: 478 RYINW 482
Score = 68.2 bits (165), Expect(4) = 2e-47
Identities = 52/161 (32%), Positives = 80/161 (49%), Gaps = 8/161 (4%)
Frame = +3
Query: 1104 SHGS----QFSDHALMCVTMEHHQDQAARPSRFLNHLASHTDFMQYVREVW-NKQVQGSP 1268
SHG FSDH V +E + A RP +F N L + DF+ V + W + V GS
Sbjct: 79 SHGLFGNLDFSDHVSCGVVLEANGISAKRPFKFFNFLLKNEDFLNVVMDNWFSTNVVGSS 138
Query: 1269 MEKVWKKLKFMKGAMKELNQKEFSKVDLKIQIIRQHLSDIQQIFRSTYNDQLLYDREKQL 1448
M +V KKLK MK +K+ ++ +S ++L+ + + L Q + T + + + +L
Sbjct: 139 MYRVSKKLKAMKKPIKDFSRLNYSGIELRTKEAHELLITCQNL---TLANPSVSNAALEL 195
Query: 1449 KVDLEKWNLV---EESILRQKSRVQCLELRNSNSAYFFASV 1562
+ KW L+ EES Q+SRV +SN+ YF V
Sbjct: 196 EAQ-RKWVLLSCAEESFFHQRSRVSWFAEGDSNTHYFHRMV 235
Score = 40.8 bits (94), Expect(4) = 2e-47
Identities = 32/107 (29%), Positives = 48/107 (44%), Gaps = 4/107 (3%)
Frame = +2
Query: 1580 NHIKKLVSDSGRIMQSKNKVEKEITGFYKRLLRSSAAESPGTQPDVMSNGPILKRDQQ-- 1753
N I LV +G ++ S+ + +Y+RLL S ESP + N + R Q
Sbjct: 242 NTINSLVDSNGLLIDSQQGILDHCVTYYERLLGS--IESPFSMEQEDMNLLLTYRCSQDQ 299
Query: 1754 --LLLITPMSKEIQDTLKDISDLKSPGCDGFNTAFFKKAWPTIGDEV 1888
L + EI+ K + K+ G DG++ FF+ W IG EV
Sbjct: 300 CSELEKSFTDDEIKAAFKSLPRNKTSGPDGYSVEFFRDTWSIIGPEV 346
Score = 34.7 bits (78), Expect(4) = 2e-47
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Frame = +1
Query: 886 FNAILRGEDRMNGNQI-VDAEIKDFEQCLLNTGLTEMKDI*RFFTWTNNH----VLSKID 1050
FN +L ++ N + +D ++DF CL L+++ FTW N + K+D
Sbjct: 5 FNQVLLPQEHSNPPSLNIDRRMRDFGSCLSEMELSDLVFKGNSFTWWNKSSIRPIAKKLD 64
Query: 1051 RALVNPS*LSRWP 1089
R L N S + +P
Sbjct: 65 RILANDSWCNLYP 77
>ref|XP_006586520.1| PREDICTED: uncharacterized protein LOC102662200 [Glycine max]
Length = 490
Score = 98.2 bits (243), Expect(4) = 3e-46
Identities = 50/125 (40%), Positives = 77/125 (61%)
Frame = +1
Query: 1921 KMFKAINCTSMTLIPKVPNPSSIKEF*PIKCCTMLYKIISKVLTKRLQQVINSVIYSNQT 2100
++F N T +TL+PK N S++KE+ PI CT YKI+SK+LT RL +V+ SV+ +Q
Sbjct: 335 QLFLPFNQTVVTLVPKSDNASTVKEYKPIAVCTTFYKIMSKILTARLNKVLPSVVSLSQA 394
Query: 2101 TFVPGRVITYNILLSHELVKGYTRKGLSTRCVLKINMQKAYDFLEWGFLEQGLVALNFPI 2280
+S+EL+ GY +KG + R ++++++QKAYD ++W LE L L P
Sbjct: 395 -------------VSYELLNGYAKKGGTPRTMIQLDLQKAYDMIDWFSLETVLRELGIPG 441
Query: 2281 EFVSW 2295
F+SW
Sbjct: 442 RFISW 446
Score = 59.7 bits (143), Expect(4) = 3e-46
Identities = 32/104 (30%), Positives = 55/104 (52%), Gaps = 1/104 (0%)
Frame = +2
Query: 1586 IKKLVSDSGRIMQSKNKVEKEITGFYKRLLRSSAAESPGTQPDVMSNGPILKRDQQLLLI 1765
IK + D G I+ + ++ +E+ FY +L+ + + G L Q+ L+
Sbjct: 222 IKVIHKDDGTILTTHKEITQEVLAFYGKLMGHDSISLQHVDIYALRRGDHLTMVQREDLV 281
Query: 1766 TPMS-KEIQDTLKDISDLKSPGCDGFNTAFFKKAWPTIGDEVAD 1894
P++ KEI+D L ISDLK P DG+++ FFK W + ++V +
Sbjct: 282 RPVTVKEIEDALNGISDLKLPEVDGYSSKFFKSCWNIVKEDVVN 325
Score = 59.3 bits (142), Expect(4) = 3e-46
Identities = 37/147 (25%), Positives = 66/147 (44%), Gaps = 4/147 (2%)
Frame = +1
Query: 859 QHPWLVMEYFNAILRGEDRMNGNQIVDAEIKDFEQCLLNTGLTEMKDI*RFFTWTN---- 1026
Q PW + +N + + +DR+ G + +AE +D + + TGL+EM FTWTN
Sbjct: 3 QGPWCAVGDYNNVAKSQDRVGGKLVTEAEYEDLQAMMDATGLSEMDSSGEIFTWTNKQAD 62
Query: 1027 NHVLSKIDRALVNPS*LSRWPHLEVTVMDPSSLIMLLCV*QWSIIRIKLLDHLDFSTTWQ 1206
N + S+IDR L N +T++ P +++ S+ ++ D +T
Sbjct: 63 NPIYSRIDRILANIDWFQTHSDANLTILPPPMYLIITSFICLSLFMLEKEISSDSTTAGW 122
Query: 1207 AILILCNM*ERCGTNRCRVVQWKKSGR 1287
+ + + GTN +Q + R
Sbjct: 123 MQWVFIVLWKDVGTNLLEALQCRGCAR 149
Score = 38.9 bits (89), Expect(4) = 3e-46
Identities = 19/63 (30%), Positives = 34/63 (53%)
Frame = +3
Query: 1368 RQHLSDIQQIFRSTYNDQLLYDREKQLKVDLEKWNLVEESILRQKSRVQCLELRNSNSAY 1547
R+ L QQ R+ D + K+L ++ WN +EE +L Q+S++ + + N+A+
Sbjct: 149 REKLDQAQQDLRNNIMDAPRIEEVKRLTDEVIHWNEMEEKMLMQRSKIDWIRAGDGNNAF 208
Query: 1548 FFA 1556
F A
Sbjct: 209 FHA 211