BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atropa21_contig00031539
         (672 letters)

Database: nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD26953.1| putative non-LTR retrolelement reverse transcript...    44   4e-06
ref|XP_002332211.1| predicted protein [Populus trichocarpa]            48   9e-06

>gb|AAD26953.1| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 323

 Score = 43.5 bits (101), Expect(2) = 4e-06
 Identities = 19/48 (39%), Positives = 29/48 (60%)
 Frame = -2

Query: 617 PWRRWIWNKMNIPKHDCIAWLAAHQGLQT*DILYRIGISQDDKCQICD 474
           PW++ +W K  IPKH  I W+AA + L T D L + G++    C +C+
Sbjct: 153 PWQKSVWFKDRIPKHAFICWVAAWKRLHTRDRLTQWGLNIPTVCVLCN 200



 Score = 33.5 bits (75), Expect(2) = 4e-06
 Identities = 30/109 (27%), Positives = 45/109 (41%), Gaps = 6/109 (5%)
 Frame = -3

Query: 490 NVRYVTMHHLFYECCMSRVCLDEILKWLQLRI-----HNKEGRGIWKRKAKGRKYREFVL 326
           NV   T  HLF++C  S    +EI  +  +R      H      +W + A   K    ++
Sbjct: 200 NVVDETHDHLFFQCQFS----NEIWSFFMIRAGMTPPHLFGPILLWLKSASSSKNLSLII 255

Query: 325 AAL-TALVYYIWKARNEAFWENKVIRPQKLVEKVQQECRVIAMDILQNR 182
             L  A VY IW+ RN          P  ++++VQQ  R     I + R
Sbjct: 256 KLLFQASVYLIWRERNCRIHTTHSRTPPTIIKEVQQLIRARLDPICRER 304


>ref|XP_002332211.1| predicted protein [Populus trichocarpa]
          Length = 1386

 Score = 48.1 bits (113), Expect(2) = 9e-06
 Identities = 20/65 (30%), Positives = 34/65 (52%)
 Frame = -2

Query: 671  KYTIQSGYKWLRGTIDEQPWRRWIWNKMNIPKHDCIAWLAAHQGLQT*DILYRIGISQDD 492
            ++ ++  ++ LR       W   +W K  +P+H  + W+A  Q L T D LYR GI   +
Sbjct: 1196 RFLVKVAWEHLRRHRQMVEWHDIVWFKNAVPRHSFLLWMAVQQKLTTQDKLYRFGIHGPN 1255

Query: 491  KCQIC 477
            +C +C
Sbjct: 1256 RCSLC 1260



 Score = 27.7 bits (60), Expect(2) = 9e-06
 Identities = 23/112 (20%), Positives = 46/112 (41%), Gaps = 17/112 (15%)
 Frame = -3

Query: 469  HHLFYECCMSR-----VC-----------LDEILKWLQLRIHNKEGRGIWKRKAKGRKYR 338
            +HLF+EC  ++     VC            DE ++W  +  H K      ++        
Sbjct: 1268 NHLFFECSYTKAIWWDVCDRCDIPRMTKGWDEWIRWATVSWHGKSFVNFSRK-------- 1319

Query: 337  EFVLAALTALVYYIWKARNEAFWENKVIRPQKLVEKVQQECRV-IAMDILQN 185
                 +  A VY++W+ RN   +      P  ++ ++  EC +   +D+++N
Sbjct: 1320 ----LSFAATVYHVWQERNARIFAGMSRTPNLVLNQI--ECIIRDKLDLMRN 1365