BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atropa21_contig00031525
         (848 letters)

Database: nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004240257.1| PREDICTED: pentatricopeptide repeat-containi...   482   e-134
gb|EMJ15730.1| hypothetical protein PRUPE_ppa014874mg, partial [...   305   1e-80
ref|XP_002305195.1| pentatricopeptide repeat-containing family p...   302   9e-80
ref|XP_004171986.1| PREDICTED: pentatricopeptide repeat-containi...   300   4e-79
ref|XP_004140361.1| PREDICTED: pentatricopeptide repeat-containi...   300   4e-79
ref|XP_003633738.1| PREDICTED: pentatricopeptide repeat-containi...   299   1e-78
emb|CAN82481.1| hypothetical protein VITISV_012747 [Vitis vinifera]   296   8e-78
ref|XP_002531188.1| pentatricopeptide repeat-containing protein,...   295   2e-77
ref|XP_004301459.1| PREDICTED: pentatricopeptide repeat-containi...   293   5e-77
gb|EXB56945.1| hypothetical protein L484_019990 [Morus notabilis]     291   2e-76
ref|XP_006482125.1| PREDICTED: pentatricopeptide repeat-containi...   288   2e-75
ref|XP_006391386.1| hypothetical protein EUTSA_v10018418mg [Eutr...   280   5e-73
gb|EOY14229.1| Pentatricopeptide repeat (PPR) superfamily protei...   276   7e-72
gb|EOY14228.1| Pentatricopeptide repeat (PPR) superfamily protei...   276   7e-72
gb|EOY14227.1| Pentatricopeptide repeat (PPR) superfamily protei...   276   7e-72
gb|EOY14226.1| Pentatricopeptide repeat superfamily protein, put...   276   7e-72
gb|EOY14225.1| Pentatricopeptide repeat superfamily protein, put...   276   7e-72
ref|XP_006302104.1| hypothetical protein CARUB_v10020095mg [Caps...   273   4e-71
ref|XP_002887023.1| pentatricopeptide repeat-containing protein ...   269   8e-70
ref|NP_849849.1| pentatricopeptide repeat-containing protein [Ar...   263   6e-68

>ref|XP_004240257.1| PREDICTED: pentatricopeptide repeat-containing protein At1g66345,
           mitochondrial-like [Solanum lycopersicum]
          Length = 552

 Score =  482 bits (1240), Expect = e-134
 Identities = 243/287 (84%), Positives = 257/287 (89%), Gaps = 5/287 (1%)
 Frame = -3

Query: 846 SFHFTPTIIQEILLHLKEPNDAKNALNFFHWSAKNSNTRHGXXXXXXXXXILAKSKLVRH 667
           SFHFT  I+QE+LL LKEP+DAKNAL+FFHWSAK+ N+RHG         ILAKSKLVRH
Sbjct: 72  SFHFTDPIVQEVLLQLKEPHDAKNALSFFHWSAKSFNSRHGVFIYCIIIHILAKSKLVRH 131

Query: 666 ANALIESALRNEN-----VFVVLDSLIGSYKLVDSCPFVFDLFVQCCAKLRLIDKGLDVC 502
           ANALIES LR E+     VF VL  LIGSYKL DSC FVFDLFVQCCAKLR+IDKGLDVC
Sbjct: 132 ANALIESVLRKESGVDGHVFSVLACLIGSYKLADSCSFVFDLFVQCCAKLRMIDKGLDVC 191

Query: 501 KLLDENGFMLSVISYNTLLHVVQKSEKTCMVWGIYEYMIEKRIYPNEMTTRIMISALCKE 322
           KLLD NGFMLS+ISYNTLLHVVQKSEKT MVWGIYEYMIEKRIYPNEMTTRIMISALCK+
Sbjct: 192 KLLDGNGFMLSLISYNTLLHVVQKSEKTSMVWGIYEYMIEKRIYPNEMTTRIMISALCKQ 251

Query: 321 GRLQRFLDVVEKSHGKRSRPGVVVNTCLIYGMIEEGRIEDGLRLMKRMLQKNMILDTISC 142
           GRLQRFLDV+EKSHGKR RPGVVVNTCLIYGMIEEGRIEDGLRLM+RMLQKNMILDTISC
Sbjct: 252 GRLQRFLDVLEKSHGKRCRPGVVVNTCLIYGMIEEGRIEDGLRLMRRMLQKNMILDTISC 311

Query: 141 SLVILAKVKTRDLESAWTVYDEMLRRGFEGNALVYDSFIGAYCEEKR 1
           SL++LAKVK RDLESAW VYDEMLRRGFEGNALVYDSFIGAYCEEKR
Sbjct: 312 SLIVLAKVKMRDLESAWGVYDEMLRRGFEGNALVYDSFIGAYCEEKR 358


>gb|EMJ15730.1| hypothetical protein PRUPE_ppa014874mg, partial [Prunus persica]
          Length = 499

 Score =  305 bits (782), Expect = 1e-80
 Identities = 149/279 (53%), Positives = 205/279 (73%), Gaps = 4/279 (1%)
 Frame = -3

Query: 825 IIQEILLHLKEPNDAKNALNFFHWSAKNSNTRHGXXXXXXXXXILAKSKLVRHANALIES 646
           ++  +LL LKEP DAK AL FFHW+A   +  HG         ILA+++L+  A AL+ES
Sbjct: 63  LVDSVLLELKEPIDAKRALGFFHWAAHRKSFEHGVWSYSITIHILARARLLMDARALLES 122

Query: 645 ALR----NENVFVVLDSLIGSYKLVDSCPFVFDLFVQCCAKLRLIDKGLDVCKLLDENGF 478
            L+    N + F V+DSL+ SY++  S PFVFDL +Q  AKLR+ + G DVC  L E+G 
Sbjct: 123 VLKKTAENGSKFSVVDSLLSSYEVTASNPFVFDLLLQAYAKLRMFETGFDVCCYLGEHGL 182

Query: 477 MLSVISYNTLLHVVQKSEKTCMVWGIYEYMIEKRIYPNEMTTRIMISALCKEGRLQRFLD 298
            LS+I+YNTLLHVVQKS++T +VW IYE+M+ KR YPNE T +I+I ALCKEG+L++ +D
Sbjct: 183 PLSLITYNTLLHVVQKSDQTALVWKIYEHMVGKRNYPNEETIKILIDALCKEGKLKKCVD 242

Query: 297 VVEKSHGKRSRPGVVVNTCLIYGMIEEGRIEDGLRLMKRMLQKNMILDTISCSLVILAKV 118
           ++++ HGKR  P V+VNT L++ ++E GR+E+GL L++RMLQKNM+LDTI+ SL++ AKV
Sbjct: 243 MLDRIHGKRCSPSVIVNTSLVFSILEGGRVEEGLMLLRRMLQKNMVLDTIAYSLIVYAKV 302

Query: 117 KTRDLESAWTVYDEMLRRGFEGNALVYDSFIGAYCEEKR 1
           K  D+ SAW VY+EML+RGF  N+ VY  F+GA+CEE R
Sbjct: 303 KLGDVCSAWEVYEEMLKRGFRANSFVYTLFMGAHCEEGR 341



 Score = 71.2 bits (173), Expect = 4e-10
 Identities = 39/170 (22%), Positives = 82/170 (48%)
 Frame = -3

Query: 525 IDKGLDVCKLLDENGFMLSVISYNTLLHVVQKSEKTCMVWGIYEYMIEKRIYPNEMTTRI 346
           +++GL + + + +   +L  I+Y+ +++   K    C  W +YE M+++    N     +
Sbjct: 272 VEEGLMLLRRMLQKNMVLDTIAYSLIVYAKVKLGDVCSAWEVYEEMLKRGFRANSFVYTL 331

Query: 345 MISALCKEGRLQRFLDVVEKSHGKRSRPGVVVNTCLIYGMIEEGRIEDGLRLMKRMLQKN 166
            + A C+EGR++    ++ +      +P       LI G  + GR+E  L  +K+M++  
Sbjct: 332 FMGAHCEEGRMEEAQGMMNEMENMDLKPFDESYNLLIEGCAKAGRVEASLSYLKKMVESG 391

Query: 165 MILDTISCSLVILAKVKTRDLESAWTVYDEMLRRGFEGNALVYDSFIGAY 16
            I    + + ++    +T D E A T++  +L +GF  ++  Y   I  Y
Sbjct: 392 FIPCRSAFNEMVGKLCETGDAEQANTMFTILLDKGFLPDSTTYGHLIDGY 441


>ref|XP_002305195.1| pentatricopeptide repeat-containing family protein [Populus
           trichocarpa] gi|222848159|gb|EEE85706.1|
           pentatricopeptide repeat-containing family protein
           [Populus trichocarpa]
          Length = 556

 Score =  302 bits (774), Expect = 9e-80
 Identities = 152/286 (53%), Positives = 204/286 (71%), Gaps = 4/286 (1%)
 Frame = -3

Query: 846 SFHFTPTIIQEILLHLKEPNDAKNALNFFHWSAKNSNTRHGXXXXXXXXXILAKSKLVRH 667
           S      +++ +LL LKEP DAK AL FFHWSA+  N  HG         IL +++L+  
Sbjct: 69  SLQLNNLLVKNVLLELKEPTDAKRALGFFHWSARR-NFVHGVQSYCLMIHILIQARLIMD 127

Query: 666 ANALIESALRNE----NVFVVLDSLIGSYKLVDSCPFVFDLFVQCCAKLRLIDKGLDVCK 499
           A AL+ES L+        F+VLDSL+ SYK++ S P VFDL VQ  AK R+ + G DVC 
Sbjct: 128 AQALLESLLKKSVGDPTKFLVLDSLLSSYKIIISSPLVFDLLVQAYAKQRMFEIGFDVCC 187

Query: 498 LLDENGFMLSVISYNTLLHVVQKSEKTCMVWGIYEYMIEKRIYPNEMTTRIMISALCKEG 319
            L+E+ F LS+IS+NTL+HVVQKS+K+ + W IYE+M+ +R YPNE T   MISALCKEG
Sbjct: 188 RLEEHRFTLSLISFNTLIHVVQKSDKSPLAWKIYEHMLHRRTYPNEATIESMISALCKEG 247

Query: 318 RLQRFLDVVEKSHGKRSRPGVVVNTCLIYGMIEEGRIEDGLRLMKRMLQKNMILDTISCS 139
           +LQ  +++++K HGKR  P V+VNTCL++ ++EEGR+E GL L+K ML+KNMILDT++ S
Sbjct: 248 KLQTIVNMLDKIHGKRCSPVVIVNTCLVFRILEEGRVEPGLALLKMMLRKNMILDTVAYS 307

Query: 138 LVILAKVKTRDLESAWTVYDEMLRRGFEGNALVYDSFIGAYCEEKR 1
           L++ AKVK  +L SA  VY+EML+RGF  N+ VY SFIGAYC+E+R
Sbjct: 308 LIVYAKVKLGNLNSAMQVYEEMLKRGFNANSFVYTSFIGAYCKEER 353



 Score = 58.9 bits (141), Expect = 2e-06
 Identities = 36/191 (18%), Positives = 83/191 (43%), Gaps = 5/191 (2%)
 Frame = -3

Query: 558 LFVQCCAKLRLIDKG-----LDVCKLLDENGFMLSVISYNTLLHVVQKSEKTCMVWGIYE 394
           + V  C   R++++G     L + K++     +L  ++Y+ +++   K         +YE
Sbjct: 268 VIVNTCLVFRILEEGRVEPGLALLKMMLRKNMILDTVAYSLIVYAKVKLGNLNSAMQVYE 327

Query: 393 YMIEKRIYPNEMTTRIMISALCKEGRLQRFLDVVEKSHGKRSRPGVVVNTCLIYGMIEEG 214
            M+++    N       I A CKE R++    ++++      +P       L+ G  + G
Sbjct: 328 EMLKRGFNANSFVYTSFIGAYCKEERIEEANQLLQEMENMGLKPYGDTFNFLLEGCAKAG 387

Query: 213 RIEDGLRLMKRMLQKNMILDTISCSLVILAKVKTRDLESAWTVYDEMLRRGFEGNALVYD 34
           R+E+ L   K+M++   +    + + ++    +  D+  A  +   +L  GF  + + Y 
Sbjct: 388 RVEETLSYCKKMMEMGHVPSLSAFNEMVGKLCRIEDVTRANEMLTNLLDEGFLADEITYS 447

Query: 33  SFIGAYCEEKR 1
           + I  Y +  +
Sbjct: 448 NLISGYAKNNQ 458



 Score = 57.0 bits (136), Expect = 8e-06
 Identities = 38/182 (20%), Positives = 88/182 (48%)
 Frame = -3

Query: 564 FDLFVQCCAKLRLIDKGLDVCKLLDENGFMLSVISYNTLLHVVQKSEKTCMVWGIYEYMI 385
           F+  ++ CAK   +++ L  CK + E G + S+ ++N ++  + + E       +   ++
Sbjct: 376 FNFLLEGCAKAGRVEETLSYCKKMMEMGHVPSLSAFNEMVGKLCRIEDVTRANEMLTNLL 435

Query: 384 EKRIYPNEMTTRIMISALCKEGRLQRFLDVVEKSHGKRSRPGVVVNTCLIYGMIEEGRIE 205
           ++    +E+T   +IS   K  ++Q  L +  +   +   PG++  T LI G+   G++E
Sbjct: 436 DEGFLADEITYSNLISGYAKNNQIQEMLKLYYEMEYRSLSPGLMGFTSLIKGLCNCGKLE 495

Query: 204 DGLRLMKRMLQKNMILDTISCSLVILAKVKTRDLESAWTVYDEMLRRGFEGNALVYDSFI 25
           +  + ++ M+ +++         +I    +  D   A  +Y+EM+ +G +   L    ++
Sbjct: 496 EAEKYLRIMIGRSLNPREDVYEALIKVYFEKGDKRRALNLYNEMVSKGLK---LCCSHYL 552

Query: 24  GA 19
           GA
Sbjct: 553 GA 554


>ref|XP_004171986.1| PREDICTED: pentatricopeptide repeat-containing protein At1g66345,
           mitochondrial-like [Cucumis sativus]
          Length = 539

 Score =  300 bits (768), Expect = 4e-79
 Identities = 147/275 (53%), Positives = 195/275 (70%), Gaps = 4/275 (1%)
 Frame = -3

Query: 825 IIQEILLHLKEPNDAKNALNFFHWSAKNSNTRHGXXXXXXXXXILAKSKLVRHANALIES 646
           ++Q++LL  ++P DAK AL FFHWSAK  N  HG         IL K++LV  A AL+ES
Sbjct: 71  LVQKVLLKFQQPVDAKRALGFFHWSAKRKNFNHGPQSFGIMIHILVKARLVLDARALLES 130

Query: 645 ALR----NENVFVVLDSLIGSYKLVDSCPFVFDLFVQCCAKLRLIDKGLDVCKLLDENGF 478
            L+    N   + V+DSL+ SY++  S PFVFDL VQ CAKLRLID  L VC  L+E GF
Sbjct: 131 ILKKNEGNSFDYSVVDSLMDSYEVTGSSPFVFDLLVQTCAKLRLIDFALCVCSHLEERGF 190

Query: 477 MLSVISYNTLLHVVQKSEKTCMVWGIYEYMIEKRIYPNEMTTRIMISALCKEGRLQRFLD 298
            LS+IS+NTL+HVV+KS++   VW IYE MI KR+YPN +T RIMI++LCKEG+LQ   D
Sbjct: 191 SLSLISFNTLIHVVEKSDQNLKVWKIYEQMIRKRVYPNAITVRIMINSLCKEGKLQETSD 250

Query: 297 VVEKSHGKRSRPGVVVNTCLIYGMIEEGRIEDGLRLMKRMLQKNMILDTISCSLVILAKV 118
           ++ + HG R    ++VN CLIY ++EEGR+EDG+ L+KRMLQKNM+LD I+ SL++ AKV
Sbjct: 251 MLNRIHGSRCSASLIVNACLIYRILEEGRVEDGITLLKRMLQKNMVLDDIAYSLIVYAKV 310

Query: 117 KTRDLESAWTVYDEMLRRGFEGNALVYDSFIGAYC 13
           KT  + S W V++EM  RGF+ N+ +Y  FIG +C
Sbjct: 311 KTGSITSTWEVFEEMSERGFQANSFIYTLFIGVHC 345


>ref|XP_004140361.1| PREDICTED: pentatricopeptide repeat-containing protein At1g66345,
           mitochondrial-like [Cucumis sativus]
          Length = 517

 Score =  300 bits (768), Expect = 4e-79
 Identities = 147/275 (53%), Positives = 195/275 (70%), Gaps = 4/275 (1%)
 Frame = -3

Query: 825 IIQEILLHLKEPNDAKNALNFFHWSAKNSNTRHGXXXXXXXXXILAKSKLVRHANALIES 646
           ++Q++LL  ++P DAK AL FFHWSAK  N  HG         IL K++LV  A AL+ES
Sbjct: 49  LVQKVLLKFQQPVDAKRALGFFHWSAKRKNFNHGPQSFGIMIHILVKARLVLDARALLES 108

Query: 645 ALR----NENVFVVLDSLIGSYKLVDSCPFVFDLFVQCCAKLRLIDKGLDVCKLLDENGF 478
            L+    N   + V+DSL+ SY++  S PFVFDL VQ CAKLRLID  L VC  L+E GF
Sbjct: 109 ILKKNEGNSFDYSVVDSLMDSYEVTGSSPFVFDLLVQTCAKLRLIDFALCVCSHLEERGF 168

Query: 477 MLSVISYNTLLHVVQKSEKTCMVWGIYEYMIEKRIYPNEMTTRIMISALCKEGRLQRFLD 298
            LS+IS+NTL+HVV+KS++   VW IYE MI KR+YPN +T RIMI++LCKEG+LQ   D
Sbjct: 169 SLSLISFNTLIHVVEKSDENLKVWKIYEQMIRKRVYPNAITVRIMINSLCKEGKLQETSD 228

Query: 297 VVEKSHGKRSRPGVVVNTCLIYGMIEEGRIEDGLRLMKRMLQKNMILDTISCSLVILAKV 118
           ++ + HG R    ++VN CLIY ++EEGR+EDG+ L+KRMLQKNM+LD I+ SL++ AKV
Sbjct: 229 MLNRIHGSRCSASLIVNACLIYRILEEGRVEDGITLLKRMLQKNMVLDDIAYSLIVYAKV 288

Query: 117 KTRDLESAWTVYDEMLRRGFEGNALVYDSFIGAYC 13
           KT  + S W V++EM  RGF+ N+ +Y  FIG +C
Sbjct: 289 KTGSITSTWEVFEEMSERGFQANSFIYTLFIGVHC 323


>ref|XP_003633738.1| PREDICTED: pentatricopeptide repeat-containing protein At1g66345,
           mitochondrial-like [Vitis vinifera]
          Length = 547

 Score =  299 bits (765), Expect = 1e-78
 Identities = 152/284 (53%), Positives = 201/284 (70%), Gaps = 2/284 (0%)
 Frame = -3

Query: 846 SFHFTPTIIQEILLHLKEPNDAKNALNFFHWSAKNSNTRHGXXXXXXXXXILAKSKLVRH 667
           S   T + +  +LL LK+P DAK AL FFHWSA+  N  HG         IL  ++L+  
Sbjct: 63  SLELTESFVGRVLLELKKPIDAKQALGFFHWSAQCKNLEHGLASYCITIHILVGAQLLMD 122

Query: 666 ANALIESALRNE--NVFVVLDSLIGSYKLVDSCPFVFDLFVQCCAKLRLIDKGLDVCKLL 493
           A +L+ES L+    + F+V+DSL+ SY +  S P VFDL VQ  +KLR+ +   DVC  L
Sbjct: 123 AQSLLESTLKKNAGSRFLVVDSLLSSYNITGSNPRVFDLLVQSYSKLRMFEICFDVCCYL 182

Query: 492 DENGFMLSVISYNTLLHVVQKSEKTCMVWGIYEYMIEKRIYPNEMTTRIMISALCKEGRL 313
           +E+GF LS+IS+NTLLHVVQKS+   +VW IYE+MI  R YPNE++  +MISALCKEG L
Sbjct: 183 EEHGFSLSLISFNTLLHVVQKSDNYPLVWKIYEHMIRVRKYPNEVSVSVMISALCKEGAL 242

Query: 312 QRFLDVVEKSHGKRSRPGVVVNTCLIYGMIEEGRIEDGLRLMKRMLQKNMILDTISCSLV 133
           Q+F+D++++ HGKR  P V+VNTC+I+ M+EEGR+E G+ ++KR+LQKNMILDTIS SL+
Sbjct: 243 QKFVDMLDRIHGKRCSPIVIVNTCMIFRMLEEGRVEQGMLILKRLLQKNMILDTISYSLI 302

Query: 132 ILAKVKTRDLESAWTVYDEMLRRGFEGNALVYDSFIGAYCEEKR 1
             AKVK   L+SAW VY+EML RGF  NA VY  FIG++C E R
Sbjct: 303 AYAKVKYGTLDSAWEVYEEMLNRGFHPNAFVYTLFIGSHCVEGR 346



 Score = 73.9 bits (180), Expect = 7e-11
 Identities = 41/170 (24%), Positives = 85/170 (50%)
 Frame = -3

Query: 525 IDKGLDVCKLLDENGFMLSVISYNTLLHVVQKSEKTCMVWGIYEYMIEKRIYPNEMTTRI 346
           +++G+ + K L +   +L  ISY+ + +   K       W +YE M+ +  +PN     +
Sbjct: 277 VEQGMLILKRLLQKNMILDTISYSLIAYAKVKYGTLDSAWEVYEEMLNRGFHPNAFVYTL 336

Query: 345 MISALCKEGRLQRFLDVVEKSHGKRSRPGVVVNTCLIYGMIEEGRIEDGLRLMKRMLQKN 166
            I + C EGR++   ++++        P       LI G  + GR+E+GLRL +RM+Q+ 
Sbjct: 337 FIGSHCVEGRIEEANELMQDMENAGLMPYDETFNLLIAGCSKAGRLEEGLRLCERMMQRG 396

Query: 165 MILDTISCSLVILAKVKTRDLESAWTVYDEMLRRGFEGNALVYDSFIGAY 16
           ++    + +L+     ++  ++ A  +   +L +GF  + + Y + I +Y
Sbjct: 397 LVPSCWAFNLMAGKLCESGVVKRADEMLTLLLDKGFVPDEITYSNLIASY 446


>emb|CAN82481.1| hypothetical protein VITISV_012747 [Vitis vinifera]
          Length = 642

 Score =  296 bits (757), Expect = 8e-78
 Identities = 151/284 (53%), Positives = 199/284 (70%), Gaps = 2/284 (0%)
 Frame = -3

Query: 846 SFHFTPTIIQEILLHLKEPNDAKNALNFFHWSAKNSNTRHGXXXXXXXXXILAKSKLVRH 667
           S   T + +  +LL LK+P DAK AL FFHWSA+  N  HG         IL  + L+  
Sbjct: 63  SLELTESFVGRVLLELKKPIDAKQALGFFHWSAQCKNLEHGVASYCITIHILVGAHLLMD 122

Query: 666 ANALIESALRNE--NVFVVLDSLIGSYKLVDSCPFVFDLFVQCCAKLRLIDKGLDVCKLL 493
           A +L+ES L+    + F+V+DSL+ SY +  S P VFDL VQ  +KLR+ +   DVC  L
Sbjct: 123 AQSLLESTLKKNAGSRFLVVDSLLSSYNITGSNPRVFDLLVQSYSKLRMFEICFDVCCYL 182

Query: 492 DENGFMLSVISYNTLLHVVQKSEKTCMVWGIYEYMIEKRIYPNEMTTRIMISALCKEGRL 313
           +E+GF LS+IS+N LLHVVQKS+   +VW IYE+MI  R YPNE++  +MISALCKEG L
Sbjct: 183 EEHGFSLSLISFNXLLHVVQKSDNYPLVWKIYEHMIRVRKYPNEVSVSVMISALCKEGAL 242

Query: 312 QRFLDVVEKSHGKRSRPGVVVNTCLIYGMIEEGRIEDGLRLMKRMLQKNMILDTISCSLV 133
           Q+F+D++++ HGKR  P V+VNTC+I+ M+EEGR+E G+ ++KR+LQKNMILDTIS SL+
Sbjct: 243 QKFVDMLDRIHGKRCSPIVIVNTCMIFRMLEEGRVEQGMLILKRLLQKNMILDTISYSLI 302

Query: 132 ILAKVKTRDLESAWTVYDEMLRRGFEGNALVYDSFIGAYCEEKR 1
             AKVK   L+SAW VY+EML RGF  NA VY  FIG++C E R
Sbjct: 303 AYAKVKYGTLDSAWEVYEEMLNRGFHPNAFVYTLFIGSHCVEGR 346



 Score = 73.9 bits (180), Expect = 7e-11
 Identities = 41/170 (24%), Positives = 85/170 (50%)
 Frame = -3

Query: 525 IDKGLDVCKLLDENGFMLSVISYNTLLHVVQKSEKTCMVWGIYEYMIEKRIYPNEMTTRI 346
           +++G+ + K L +   +L  ISY+ + +   K       W +YE M+ +  +PN     +
Sbjct: 277 VEQGMLILKRLLQKNMILDTISYSLIAYAKVKYGTLDSAWEVYEEMLNRGFHPNAFVYTL 336

Query: 345 MISALCKEGRLQRFLDVVEKSHGKRSRPGVVVNTCLIYGMIEEGRIEDGLRLMKRMLQKN 166
            I + C EGR++   ++++        P       LI G  + GR+E+GLRL +RM+Q+ 
Sbjct: 337 FIGSHCVEGRIEEANELMQDMENAGLMPYDETFNLLIAGCSKAGRLEEGLRLCERMMQRG 396

Query: 165 MILDTISCSLVILAKVKTRDLESAWTVYDEMLRRGFEGNALVYDSFIGAY 16
           ++    + +L+     ++  ++ A  +   +L +GF  + + Y + I +Y
Sbjct: 397 LVPSCWAFNLMAGKLCESGVVKRADEMLTLLLDKGFVPDEITYSNLIASY 446


>ref|XP_002531188.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223529229|gb|EEF31203.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 619

 Score =  295 bits (754), Expect = 2e-77
 Identities = 140/275 (50%), Positives = 204/275 (74%), Gaps = 4/275 (1%)
 Frame = -3

Query: 825 IIQEILLHLKEPNDAKNALNFFHWSAKNSNTRHGXXXXXXXXXILAKSKLVRHANALIES 646
           +++++LL LKEP DAK AL FFHWSA+  N  HG         IL +++L+  A AL+ES
Sbjct: 76  LVEKVLLELKEPIDAKRALGFFHWSAQRKNFVHGVWSYCLMVNILVRAQLLNDAQALLES 135

Query: 645 ALR----NENVFVVLDSLIGSYKLVDSCPFVFDLFVQCCAKLRLIDKGLDVCKLLDENGF 478
            L+    + + F+++DSL+ SYK++ S P VF+L VQ  AKLRL + G  +C  L+E+GF
Sbjct: 136 ILKKNVEDSSEFLIVDSLLDSYKIIVSSPLVFNLLVQAYAKLRLFEIGFKICFYLEEHGF 195

Query: 477 MLSVISYNTLLHVVQKSEKTCMVWGIYEYMIEKRIYPNEMTTRIMISALCKEGRLQRFLD 298
            LS++S+NTL+HVVQKS++  +VW IYE+MI KRIYPNE T R MI+ALCKEG+LQ F+D
Sbjct: 196 FLSLLSFNTLIHVVQKSDQYPLVWKIYEHMIHKRIYPNEATIRTMINALCKEGKLQMFVD 255

Query: 297 VVEKSHGKRSRPGVVVNTCLIYGMIEEGRIEDGLRLMKRMLQKNMILDTISCSLVILAKV 118
           ++++ HGKR RP V++N C+++ +++EGR++ G+ ++K MLQKNMILDT++ SL++ AKV
Sbjct: 256 ILDRIHGKRCRPLVIINACMVFRILQEGRVDVGIGILKGMLQKNMILDTVAYSLIVFAKV 315

Query: 117 KTRDLESAWTVYDEMLRRGFEGNALVYDSFIGAYC 13
           +  +L+SA  VY+ ML+RGF  N+ V+   IGAYC
Sbjct: 316 RLGNLDSALEVYEAMLKRGFNANSFVHTVLIGAYC 350


>ref|XP_004301459.1| PREDICTED: pentatricopeptide repeat-containing protein At1g66345,
           mitochondrial-like [Fragaria vesca subsp. vesca]
          Length = 530

 Score =  293 bits (750), Expect = 5e-77
 Identities = 146/280 (52%), Positives = 200/280 (71%), Gaps = 5/280 (1%)
 Frame = -3

Query: 825 IIQEILLHLKEPNDAKNALNFFHWSAKNSNTRHGXXXXXXXXXILAKSKLVRHANALIES 646
           +++ +LL LK+PNDAK AL FFHW +K  +  HG         IL ++K+   A AL+ES
Sbjct: 61  LVENVLLELKDPNDAKRALGFFHWVSKRKDFDHGVWSYSITIHILVRAKMAMDARALMES 120

Query: 645 ALRNENV-----FVVLDSLIGSYKLVDSCPFVFDLFVQCCAKLRLIDKGLDVCKLLDENG 481
            L+ +NV     F V+DSL+ SY++  S PFVFDL VQ  AK+R+ + G DVC  L E G
Sbjct: 121 VLK-KNVGDSLKFSVVDSLLSSYEVTASNPFVFDLLVQTYAKMRMFETGFDVCCYLRERG 179

Query: 480 FMLSVISYNTLLHVVQKSEKTCMVWGIYEYMIEKRIYPNEMTTRIMISALCKEGRLQRFL 301
             LS+ISYNTLL VV++SE+  +VW IYE+M+ +R YPNE T RI+I ALCKEG L+++ 
Sbjct: 180 LPLSLISYNTLLRVVERSERNALVWKIYEHMVGRRSYPNEETVRILIDALCKEGELRKYA 239

Query: 300 DVVEKSHGKRSRPGVVVNTCLIYGMIEEGRIEDGLRLMKRMLQKNMILDTISCSLVILAK 121
           D++++ HGKR  P V+VNT L++ ++EEGR+E+G+ L+KRMLQKNM+LDTI+ SL++ AK
Sbjct: 240 DMLDRIHGKRCSPSVIVNTSLVFRILEEGRVEEGMVLLKRMLQKNMVLDTIAYSLIVYAK 299

Query: 120 VKTRDLESAWTVYDEMLRRGFEGNALVYDSFIGAYCEEKR 1
           VK  DL SA  VY+EML+RGF  N+ VY  FI A+C+  R
Sbjct: 300 VKLEDLGSAQQVYEEMLKRGFRANSFVYTLFIEAHCKAGR 339



 Score = 61.2 bits (147), Expect = 4e-07
 Identities = 37/173 (21%), Positives = 78/173 (45%)
 Frame = -3

Query: 525 IDKGLDVCKLLDENGFMLSVISYNTLLHVVQKSEKTCMVWGIYEYMIEKRIYPNEMTTRI 346
           +++G+ + K + +   +L  I+Y+ +++   K E       +YE M+++    N     +
Sbjct: 270 VEEGMVLLKRMLQKNMVLDTIAYSLIVYAKVKLEDLGSAQQVYEEMLKRGFRANSFVYTL 329

Query: 345 MISALCKEGRLQRFLDVVEKSHGKRSRPGVVVNTCLIYGMIEEGRIEDGLRLMKRMLQKN 166
            I A CK GR+     ++ +      +P       LI G  + GR+E+ +  MK+M++  
Sbjct: 330 FIEAHCKAGRIDEAQSMMNEMGNMDLKPYDESYNFLIEGCAKAGRVEESVNYMKQMMEIR 389

Query: 165 MILDTISCSLVILAKVKTRDLESAWTVYDEMLRRGFEGNALVYDSFIGAYCEE 7
            I    + + ++    +  D + A  +   +L +GF  N + Y   I  Y  +
Sbjct: 390 FIPSLGAFNEMVGKLCEIGDADQANVMLTILLDKGFSPNEITYSLLIDGYARK 442


>gb|EXB56945.1| hypothetical protein L484_019990 [Morus notabilis]
          Length = 829

 Score =  291 bits (745), Expect = 2e-76
 Identities = 141/283 (49%), Positives = 205/283 (72%), Gaps = 4/283 (1%)
 Frame = -3

Query: 837  FTPTIIQEILLHLKEPNDAKNALNFFHWSAKNSNTRHGXXXXXXXXXILAKSKLVRHANA 658
            F   +I++ILL LK+P DAK AL FFHW+A   N +H          IL +++L   A A
Sbjct: 239  FNEQLIEKILLELKQPIDAKWALGFFHWAAHRVNFQHCLRSYCLAIHILVRARLNLDARA 298

Query: 657  LIESALR----NENVFVVLDSLIGSYKLVDSCPFVFDLFVQCCAKLRLIDKGLDVCKLLD 490
            LIE+ L+    + + F+V+DSL+  YK+ DS PFVFDL VQ  ++LR+ D G DVC  L+
Sbjct: 299  LIETVLKKNAGDSSKFLVVDSLLSCYKITDSTPFVFDLLVQSYSRLRMFDSGFDVCCYLE 358

Query: 489  ENGFMLSVISYNTLLHVVQKSEKTCMVWGIYEYMIEKRIYPNEMTTRIMISALCKEGRLQ 310
            E+GF L+++S+NT +HVV+KS++  MVW IYE+MI +RIYPN+ T R +IS+LCKEG+LQ
Sbjct: 359  EHGFSLNLVSFNTFIHVVEKSDENTMVWRIYEHMIWRRIYPNQSTIRTLISSLCKEGKLQ 418

Query: 309  RFLDVVEKSHGKRSRPGVVVNTCLIYGMIEEGRIEDGLRLMKRMLQKNMILDTISCSLVI 130
            ++++++++ HG+R  P V+VNT L++ + EEGR+E+G+ L+KRMLQ+NM+ DTI+ SL++
Sbjct: 419  KYVEMLDRIHGRRCSPSVIVNTSLVFKIFEEGRVEEGVVLLKRMLQRNMLFDTIAYSLIV 478

Query: 129  LAKVKTRDLESAWTVYDEMLRRGFEGNALVYDSFIGAYCEEKR 1
             AK+K  ++ SA  VY+EML+RGF  N  VY  FI AYC+E R
Sbjct: 479  YAKLKLGNIVSAQDVYEEMLKRGFRANPFVYTLFIRAYCKEGR 521



 Score = 59.7 bits (143), Expect = 1e-06
 Identities = 35/170 (20%), Positives = 76/170 (44%)
 Frame = -3

Query: 525 IDKGLDVCKLLDENGFMLSVISYNTLLHVVQKSEKTCMVWGIYEYMIEKRIYPNEMTTRI 346
           +++G+ + K + +   +   I+Y+ +++   K         +YE M+++    N     +
Sbjct: 452 VEEGVVLLKRMLQRNMLFDTIAYSLIVYAKLKLGNIVSAQDVYEEMLKRGFRANPFVYTL 511

Query: 345 MISALCKEGRLQRFLDVVEKSHGKRSRPGVVVNTCLIYGMIEEGRIEDGLRLMKRMLQKN 166
            I A CKEGR+     +++       +P       L+    + GR+E+ LR  + M++K 
Sbjct: 512 FIRAYCKEGRIDETHCMMKDMEDMGLKPYEETYNSLVECYAKAGRLEESLRNCEVMMEKG 571

Query: 165 MILDTISCSLVILAKVKTRDLESAWTVYDEMLRRGFEGNALVYDSFIGAY 16
            +    + + ++    +  + E A  +   +L +GF  N + Y S I  Y
Sbjct: 572 FVPSCAAFNEMVHKLCENGEAEKANAMLTRLLEKGFSPNDITYASLIVGY 621


>ref|XP_006482125.1| PREDICTED: pentatricopeptide repeat-containing protein At1g66345,
           mitochondrial-like isoform X1 [Citrus sinensis]
          Length = 553

 Score =  288 bits (736), Expect = 2e-75
 Identities = 145/283 (51%), Positives = 201/283 (71%), Gaps = 4/283 (1%)
 Frame = -3

Query: 846 SFHFTPTIIQEILLHLKEPNDAKNALNFFHWSAKNSNTRHGXXXXXXXXXILAKSKLVRH 667
           S H   ++++ +LL LKEP DAK AL FFHWSA + + +H          IL +++L+  
Sbjct: 62  SIHLNDSLVENVLLELKEPVDAKRALGFFHWSAHHKSYQHNLCSYSVTIHILVQARLLVD 121

Query: 666 ANALIESALR----NENVFVVLDSLIGSYKLVDSCPFVFDLFVQCCAKLRLIDKGLDVCK 499
           A ALIES L     +++ F V+DSL+ +Y + DS P VFDL VQ  +K+RL +   DVC 
Sbjct: 122 ARALIESVLEKHIGDDSRFSVVDSLLDTYNVADSIPLVFDLLVQTYSKMRLFEVAFDVCC 181

Query: 498 LLDENGFMLSVISYNTLLHVVQKSEKTCMVWGIYEYMIEKRIYPNEMTTRIMISALCKEG 319
            L++ GF LS+IS+NTL+HVV KS++  +VW IY++M+E   YPNE T R +ISALCK G
Sbjct: 182 YLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGG 241

Query: 318 RLQRFLDVVEKSHGKRSRPGVVVNTCLIYGMIEEGRIEDGLRLMKRMLQKNMILDTISCS 139
           +LQ ++D++++ HGKR  P V+VNT LI  +I+E RIE+G+ L+KRML+KNMI DTI+ S
Sbjct: 242 QLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYS 301

Query: 138 LVILAKVKTRDLESAWTVYDEMLRRGFEGNALVYDSFIGAYCE 10
           L++ AKVK  +LESA  VY+EML+RGF  N+ VY +FIGAYCE
Sbjct: 302 LIVYAKVKMGNLESALVVYEEMLKRGFSANSFVYTTFIGAYCE 344


>ref|XP_006391386.1| hypothetical protein EUTSA_v10018418mg [Eutrema salsugineum]
           gi|557087820|gb|ESQ28672.1| hypothetical protein
           EUTSA_v10018418mg [Eutrema salsugineum]
          Length = 511

 Score =  280 bits (716), Expect = 5e-73
 Identities = 145/281 (51%), Positives = 198/281 (70%), Gaps = 1/281 (0%)
 Frame = -3

Query: 846 SFHFTPTIIQEILLHLKEPNDAKNALNFFHWSAKNSNTRHGXXXXXXXXXILAKSKLVRH 667
           S  F+ +++++ILL  K+P  AK AL+FFHWSA   N RHG         IL +++L+  
Sbjct: 65  SIDFSDSLVKKILLRFKQPETAKRALSFFHWSANTRNLRHGTSSYAVAIHILVRARLLVD 124

Query: 666 ANALIESALRN-ENVFVVLDSLIGSYKLVDSCPFVFDLFVQCCAKLRLIDKGLDVCKLLD 490
           A ALIES+L N ++   +LDSL+ +Y +  S P VFDL VQ  AKLRL++ G DV   L 
Sbjct: 125 ARALIESSLLNSDSDSDLLDSLLSTYDVSCSTPLVFDLLVQGYAKLRLLESGFDVFHRLC 184

Query: 489 ENGFMLSVISYNTLLHVVQKSEKTCMVWGIYEYMIEKRIYPNEMTTRIMISALCKEGRLQ 310
           + GF LSVI+ NTLLH   KS +  +VW IYE   +KRIYPNE T +IMISALCKEG+L+
Sbjct: 185 DRGFSLSVITLNTLLHFAAKSSRIDLVWRIYELATDKRIYPNETTIQIMISALCKEGKLK 244

Query: 309 RFLDVVEKSHGKRSRPGVVVNTCLIYGMIEEGRIEDGLRLMKRMLQKNMILDTISCSLVI 130
             + ++++ HGKRS P ++VNT L++ ++E  RIE+G+ L+KR+LQKNM++DTI  SLV+
Sbjct: 245 EVVALLDRIHGKRSSPPLIVNTSLVFRVLESNRIEEGMSLLKRLLQKNMVIDTIGYSLVV 304

Query: 129 LAKVKTRDLESAWTVYDEMLRRGFEGNALVYDSFIGAYCEE 7
           LA+ K  DLESA  V+DEML+RGF+ NA VY +FI AY E+
Sbjct: 305 LARTKQGDLESARKVFDEMLQRGFDANAFVYTAFIKAYTEK 345


>gb|EOY14229.1| Pentatricopeptide repeat (PPR) superfamily protein, putative
           isoform 5 [Theobroma cacao]
          Length = 504

 Score =  276 bits (706), Expect = 7e-72
 Identities = 141/286 (49%), Positives = 199/286 (69%), Gaps = 4/286 (1%)
 Frame = -3

Query: 846 SFHFTPTIIQEILLHLKEPNDAKNALNFFHWSAKNSNTRHGXXXXXXXXXILAKSKLVRH 667
           S   T +++Q++LL LK+P  A++ALNFF+WSAK+ N +H          IL  +K +  
Sbjct: 68  SVQLTHSLVQQVLLQLKQPEHARSALNFFYWSAKSQNFKHQIYSYCIAIHILVHAKQLPE 127

Query: 666 ANALIESALR----NENVFVVLDSLIGSYKLVDSCPFVFDLFVQCCAKLRLIDKGLDVCK 499
           A  L+ SAL+    +     +L+SL+GSY +V S   VFDL VQ  AKLR+++   +VC 
Sbjct: 128 AKILLHSALKTSAPDSTRSCILESLLGSYNVVGSSTLVFDLLVQAYAKLRMLEDAFEVCC 187

Query: 498 LLDENGFMLSVISYNTLLHVVQKSEKTCMVWGIYEYMIEKRIYPNEMTTRIMISALCKEG 319
            L+ +GF L+++S+N LLH + KS +  MVW +YE+MIEKR YPNE+T R MISALCKEG
Sbjct: 188 YLENHGFSLTLLSFNALLHGILKSGENVMVWKVYEHMIEKRKYPNEITIRTMISALCKEG 247

Query: 318 RLQRFLDVVEKSHGKRSRPGVVVNTCLIYGMIEEGRIEDGLRLMKRMLQKNMILDTISCS 139
           +LQ  +D+++K  GKR  P V+VNT L++ +IEEGRIEDG+ L+KRMLQKN+ILD+I+ S
Sbjct: 248 KLQVVVDLLDKILGKRCSPIVIVNTHLVFKVIEEGRIEDGMELLKRMLQKNLILDSIAYS 307

Query: 138 LVILAKVKTRDLESAWTVYDEMLRRGFEGNALVYDSFIGAYCEEKR 1
            V+  K+K  +LE AW V++EML+RGF  N+ ++ SFI AY E  R
Sbjct: 308 FVVHTKLKLGNLELAWEVHEEMLKRGFIANSFLFSSFIRAYSESGR 353


>gb|EOY14228.1| Pentatricopeptide repeat (PPR) superfamily protein, putative
           isoform 4 [Theobroma cacao]
          Length = 569

 Score =  276 bits (706), Expect = 7e-72
 Identities = 141/286 (49%), Positives = 199/286 (69%), Gaps = 4/286 (1%)
 Frame = -3

Query: 846 SFHFTPTIIQEILLHLKEPNDAKNALNFFHWSAKNSNTRHGXXXXXXXXXILAKSKLVRH 667
           S   T +++Q++LL LK+P  A++ALNFF+WSAK+ N +H          IL  +K +  
Sbjct: 68  SVQLTHSLVQQVLLQLKQPEHARSALNFFYWSAKSQNFKHQIYSYCIAIHILVHAKQLPE 127

Query: 666 ANALIESALR----NENVFVVLDSLIGSYKLVDSCPFVFDLFVQCCAKLRLIDKGLDVCK 499
           A  L+ SAL+    +     +L+SL+GSY +V S   VFDL VQ  AKLR+++   +VC 
Sbjct: 128 AKILLHSALKTSAPDSTRSCILESLLGSYNVVGSSTLVFDLLVQAYAKLRMLEDAFEVCC 187

Query: 498 LLDENGFMLSVISYNTLLHVVQKSEKTCMVWGIYEYMIEKRIYPNEMTTRIMISALCKEG 319
            L+ +GF L+++S+N LLH + KS +  MVW +YE+MIEKR YPNE+T R MISALCKEG
Sbjct: 188 YLENHGFSLTLLSFNALLHGILKSGENVMVWKVYEHMIEKRKYPNEITIRTMISALCKEG 247

Query: 318 RLQRFLDVVEKSHGKRSRPGVVVNTCLIYGMIEEGRIEDGLRLMKRMLQKNMILDTISCS 139
           +LQ  +D+++K  GKR  P V+VNT L++ +IEEGRIEDG+ L+KRMLQKN+ILD+I+ S
Sbjct: 248 KLQVVVDLLDKILGKRCSPIVIVNTHLVFKVIEEGRIEDGMELLKRMLQKNLILDSIAYS 307

Query: 138 LVILAKVKTRDLESAWTVYDEMLRRGFEGNALVYDSFIGAYCEEKR 1
            V+  K+K  +LE AW V++EML+RGF  N+ ++ SFI AY E  R
Sbjct: 308 FVVHTKLKLGNLELAWEVHEEMLKRGFIANSFLFSSFIRAYSESGR 353



 Score = 58.9 bits (141), Expect = 2e-06
 Identities = 38/170 (22%), Positives = 80/170 (47%)
 Frame = -3

Query: 564 FDLFVQCCAKLRLIDKGLDVCKLLDENGFMLSVISYNTLLHVVQKSEKTCMVWGIYEYMI 385
           F+  ++ CAK   +   +  C+ +   G + S  ++N ++  + +   +     +   ++
Sbjct: 376 FNYLIEGCAKAGEMKASVRHCEEMIRRGLVPSCSTFNEMVRGLCEIGDSENANALLTLVL 435

Query: 384 EKRIYPNEMTTRIMISALCKEGRLQRFLDVVEKSHGKRSRPGVVVNTCLIYGMIEEGRIE 205
           +K   PNE T   +I+   KEG +Q+   +  +   K   PG+ V T LI  +   G++E
Sbjct: 436 DKGFLPNETTYSHLIAGYGKEGNIQQVFKLYYEMEYKSLSPGLPVFTSLIRCLCHCGKLE 495

Query: 204 DGLRLMKRMLQKNMILDTISCSLVILAKVKTRDLESAWTVYDEMLRRGFE 55
           +  R ++ M  ++++L       +I    +  D   A  +Y+EM+ RG +
Sbjct: 496 EAERYLRIMKDRSVVLSEDIYEALITGHFEKGDKTGAGIIYNEMVARGMK 545


>gb|EOY14227.1| Pentatricopeptide repeat (PPR) superfamily protein, putative
           isoform 3 [Theobroma cacao]
          Length = 563

 Score =  276 bits (706), Expect = 7e-72
 Identities = 141/286 (49%), Positives = 199/286 (69%), Gaps = 4/286 (1%)
 Frame = -3

Query: 846 SFHFTPTIIQEILLHLKEPNDAKNALNFFHWSAKNSNTRHGXXXXXXXXXILAKSKLVRH 667
           S   T +++Q++LL LK+P  A++ALNFF+WSAK+ N +H          IL  +K +  
Sbjct: 68  SVQLTHSLVQQVLLQLKQPEHARSALNFFYWSAKSQNFKHQIYSYCIAIHILVHAKQLPE 127

Query: 666 ANALIESALR----NENVFVVLDSLIGSYKLVDSCPFVFDLFVQCCAKLRLIDKGLDVCK 499
           A  L+ SAL+    +     +L+SL+GSY +V S   VFDL VQ  AKLR+++   +VC 
Sbjct: 128 AKILLHSALKTSAPDSTRSCILESLLGSYNVVGSSTLVFDLLVQAYAKLRMLEDAFEVCC 187

Query: 498 LLDENGFMLSVISYNTLLHVVQKSEKTCMVWGIYEYMIEKRIYPNEMTTRIMISALCKEG 319
            L+ +GF L+++S+N LLH + KS +  MVW +YE+MIEKR YPNE+T R MISALCKEG
Sbjct: 188 YLENHGFSLTLLSFNALLHGILKSGENVMVWKVYEHMIEKRKYPNEITIRTMISALCKEG 247

Query: 318 RLQRFLDVVEKSHGKRSRPGVVVNTCLIYGMIEEGRIEDGLRLMKRMLQKNMILDTISCS 139
           +LQ  +D+++K  GKR  P V+VNT L++ +IEEGRIEDG+ L+KRMLQKN+ILD+I+ S
Sbjct: 248 KLQVVVDLLDKILGKRCSPIVIVNTHLVFKVIEEGRIEDGMELLKRMLQKNLILDSIAYS 307

Query: 138 LVILAKVKTRDLESAWTVYDEMLRRGFEGNALVYDSFIGAYCEEKR 1
            V+  K+K  +LE AW V++EML+RGF  N+ ++ SFI AY E  R
Sbjct: 308 FVVHTKLKLGNLELAWEVHEEMLKRGFIANSFLFSSFIRAYSESGR 353



 Score = 58.9 bits (141), Expect = 2e-06
 Identities = 38/170 (22%), Positives = 80/170 (47%)
 Frame = -3

Query: 564 FDLFVQCCAKLRLIDKGLDVCKLLDENGFMLSVISYNTLLHVVQKSEKTCMVWGIYEYMI 385
           F+  ++ CAK   +   +  C+ +   G + S  ++N ++  + +   +     +   ++
Sbjct: 376 FNYLIEGCAKAGEMKASVRHCEEMIRRGLVPSCSTFNEMVRGLCEIGDSENANALLTLVL 435

Query: 384 EKRIYPNEMTTRIMISALCKEGRLQRFLDVVEKSHGKRSRPGVVVNTCLIYGMIEEGRIE 205
           +K   PNE T   +I+   KEG +Q+   +  +   K   PG+ V T LI  +   G++E
Sbjct: 436 DKGFLPNETTYSHLIAGYGKEGNIQQVFKLYYEMEYKSLSPGLPVFTSLIRCLCHCGKLE 495

Query: 204 DGLRLMKRMLQKNMILDTISCSLVILAKVKTRDLESAWTVYDEMLRRGFE 55
           +  R ++ M  ++++L       +I    +  D   A  +Y+EM+ RG +
Sbjct: 496 EAERYLRIMKDRSVVLSEDIYEALITGHFEKGDKTGAGIIYNEMVARGMK 545


>gb|EOY14226.1| Pentatricopeptide repeat superfamily protein, putative isoform 2
           [Theobroma cacao]
          Length = 549

 Score =  276 bits (706), Expect = 7e-72
 Identities = 141/286 (49%), Positives = 199/286 (69%), Gaps = 4/286 (1%)
 Frame = -3

Query: 846 SFHFTPTIIQEILLHLKEPNDAKNALNFFHWSAKNSNTRHGXXXXXXXXXILAKSKLVRH 667
           S   T +++Q++LL LK+P  A++ALNFF+WSAK+ N +H          IL  +K +  
Sbjct: 68  SVQLTHSLVQQVLLQLKQPEHARSALNFFYWSAKSQNFKHQIYSYCIAIHILVHAKQLPE 127

Query: 666 ANALIESALR----NENVFVVLDSLIGSYKLVDSCPFVFDLFVQCCAKLRLIDKGLDVCK 499
           A  L+ SAL+    +     +L+SL+GSY +V S   VFDL VQ  AKLR+++   +VC 
Sbjct: 128 AKILLHSALKTSAPDSTRSCILESLLGSYNVVGSSTLVFDLLVQAYAKLRMLEDAFEVCC 187

Query: 498 LLDENGFMLSVISYNTLLHVVQKSEKTCMVWGIYEYMIEKRIYPNEMTTRIMISALCKEG 319
            L+ +GF L+++S+N LLH + KS +  MVW +YE+MIEKR YPNE+T R MISALCKEG
Sbjct: 188 YLENHGFSLTLLSFNALLHGILKSGENVMVWKVYEHMIEKRKYPNEITIRTMISALCKEG 247

Query: 318 RLQRFLDVVEKSHGKRSRPGVVVNTCLIYGMIEEGRIEDGLRLMKRMLQKNMILDTISCS 139
           +LQ  +D+++K  GKR  P V+VNT L++ +IEEGRIEDG+ L+KRMLQKN+ILD+I+ S
Sbjct: 248 KLQVVVDLLDKILGKRCSPIVIVNTHLVFKVIEEGRIEDGMELLKRMLQKNLILDSIAYS 307

Query: 138 LVILAKVKTRDLESAWTVYDEMLRRGFEGNALVYDSFIGAYCEEKR 1
            V+  K+K  +LE AW V++EML+RGF  N+ ++ SFI AY E  R
Sbjct: 308 FVVHTKLKLGNLELAWEVHEEMLKRGFIANSFLFSSFIRAYSESGR 353


>gb|EOY14225.1| Pentatricopeptide repeat superfamily protein, putative isoform 1
           [Theobroma cacao]
          Length = 596

 Score =  276 bits (706), Expect = 7e-72
 Identities = 141/286 (49%), Positives = 199/286 (69%), Gaps = 4/286 (1%)
 Frame = -3

Query: 846 SFHFTPTIIQEILLHLKEPNDAKNALNFFHWSAKNSNTRHGXXXXXXXXXILAKSKLVRH 667
           S   T +++Q++LL LK+P  A++ALNFF+WSAK+ N +H          IL  +K +  
Sbjct: 68  SVQLTHSLVQQVLLQLKQPEHARSALNFFYWSAKSQNFKHQIYSYCIAIHILVHAKQLPE 127

Query: 666 ANALIESALR----NENVFVVLDSLIGSYKLVDSCPFVFDLFVQCCAKLRLIDKGLDVCK 499
           A  L+ SAL+    +     +L+SL+GSY +V S   VFDL VQ  AKLR+++   +VC 
Sbjct: 128 AKILLHSALKTSAPDSTRSCILESLLGSYNVVGSSTLVFDLLVQAYAKLRMLEDAFEVCC 187

Query: 498 LLDENGFMLSVISYNTLLHVVQKSEKTCMVWGIYEYMIEKRIYPNEMTTRIMISALCKEG 319
            L+ +GF L+++S+N LLH + KS +  MVW +YE+MIEKR YPNE+T R MISALCKEG
Sbjct: 188 YLENHGFSLTLLSFNALLHGILKSGENVMVWKVYEHMIEKRKYPNEITIRTMISALCKEG 247

Query: 318 RLQRFLDVVEKSHGKRSRPGVVVNTCLIYGMIEEGRIEDGLRLMKRMLQKNMILDTISCS 139
           +LQ  +D+++K  GKR  P V+VNT L++ +IEEGRIEDG+ L+KRMLQKN+ILD+I+ S
Sbjct: 248 KLQVVVDLLDKILGKRCSPIVIVNTHLVFKVIEEGRIEDGMELLKRMLQKNLILDSIAYS 307

Query: 138 LVILAKVKTRDLESAWTVYDEMLRRGFEGNALVYDSFIGAYCEEKR 1
            V+  K+K  +LE AW V++EML+RGF  N+ ++ SFI AY E  R
Sbjct: 308 FVVHTKLKLGNLELAWEVHEEMLKRGFIANSFLFSSFIRAYSESGR 353



 Score = 61.2 bits (147), Expect = 4e-07
 Identities = 45/199 (22%), Positives = 90/199 (45%), Gaps = 11/199 (5%)
 Frame = -3

Query: 564 FDLFVQCCAKLRLIDKGLDVCKLLDENGFMLSVISYNTLLHVVQKSEKTCMVWGIYEYMI 385
           F+  ++ CAK   +   +  C+ +   G + S  ++N ++  + +   +     +   ++
Sbjct: 376 FNYLIEGCAKAGEMKASVRHCEEMIRRGLVPSCSTFNEMVRGLCEIGDSENANALLTLVL 435

Query: 384 EKRIYPNEMTTRIMISALCKEGRLQRFLDVVEKSHGKRSRPGVVVNTCLIYGMIEEGRIE 205
           +K   PNE T   +I+   KEG +Q+   +  +   K   PG+ V T LI  +   G++E
Sbjct: 436 DKGFLPNETTYSHLIAGYGKEGNIQQVFKLYYEMEYKSLSPGLPVFTSLIRCLCHCGKLE 495

Query: 204 DGLRLMKRMLQKNMILDTISCSLVILAKVKTRDLESAWTVYDEMLRRGFE----GNAL-- 43
           +  R ++ M  ++++L       +I    +  D   A  +Y+EM+ RG +    GN    
Sbjct: 496 EAERYLRIMKDRSVVLSEDIYEALITGHFEKGDKTGAGIIYNEMVARGMKPHKWGNFTRD 555

Query: 42  -----VYDSFIGAYCEEKR 1
                + D+ +  YCE  R
Sbjct: 556 PITQELPDAALSGYCEHTR 574


>ref|XP_006302104.1| hypothetical protein CARUB_v10020095mg [Capsella rubella]
           gi|482570814|gb|EOA35002.1| hypothetical protein
           CARUB_v10020095mg [Capsella rubella]
          Length = 548

 Score =  273 bits (699), Expect = 4e-71
 Identities = 140/279 (50%), Positives = 192/279 (68%)
 Frame = -3

Query: 846 SFHFTPTIIQEILLHLKEPNDAKNALNFFHWSAKNSNTRHGXXXXXXXXXILAKSKLVRH 667
           S   + +I+ +ILL  K+P  AK AL FFHWSA   N RHG         IL K++L+  
Sbjct: 71  SIDLSDSIVNQILLRFKQPESAKRALTFFHWSAHTRNLRHGTTSYAVAIHILVKARLLID 130

Query: 666 ANALIESALRNENVFVVLDSLIGSYKLVDSCPFVFDLFVQCCAKLRLIDKGLDVCKLLDE 487
           A ALIES+L N +  +V DSL+ +Y++  S P VFDL VQC AK+R ++ G +V K L  
Sbjct: 131 ARALIESSLLNPDSGLV-DSLLDTYEVSSSTPLVFDLVVQCYAKIRDLELGFEVFKRLCC 189

Query: 486 NGFMLSVISYNTLLHVVQKSEKTCMVWGIYEYMIEKRIYPNEMTTRIMISALCKEGRLQR 307
            GF+LSV++ NTL+H   KS +  +VW IYE  I+KR+YPNE T RIMI  LCKEGRL+ 
Sbjct: 190 CGFILSVVTLNTLIHYSAKSNRVDLVWRIYECGIDKRVYPNETTIRIMIRVLCKEGRLKE 249

Query: 306 FLDVVEKSHGKRSRPGVVVNTCLIYGMIEEGRIEDGLRLMKRMLQKNMILDTISCSLVIL 127
            +D++++ HGKR  P V+VNT L++ ++E+ RIE+ + L+K++L KNM++DTI  S+V+ 
Sbjct: 250 VVDLLDRIHGKRCLPPVIVNTSLVFRVLEDNRIEESMSLLKKLLMKNMVVDTIGYSIVVY 309

Query: 126 AKVKTRDLESAWTVYDEMLRRGFEGNALVYDSFIGAYCE 10
           AK K  DLESA  V+DEML+RGF GNA VY +F+ A CE
Sbjct: 310 AKTKEGDLESARNVFDEMLQRGFSGNAFVYTAFVRACCE 348


>ref|XP_002887023.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297332864|gb|EFH63282.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 539

 Score =  269 bits (688), Expect = 8e-70
 Identities = 138/279 (49%), Positives = 186/279 (66%)
 Frame = -3

Query: 846 SFHFTPTIIQEILLHLKEPNDAKNALNFFHWSAKNSNTRHGXXXXXXXXXILAKSKLVRH 667
           S   + ++I+ ILL    P  AK AL FFHWSA   N RHG         IL K++L+  
Sbjct: 68  SIDLSDSLIETILLRFNSPETAKRALTFFHWSAHTRNLRHGIRSYAVTIHILVKARLLID 127

Query: 666 ANALIESALRNENVFVVLDSLIGSYKLVDSCPFVFDLFVQCCAKLRLIDKGLDVCKLLDE 487
           A ALIES+L N +  +V DSL+ +Y    S P VFDL VQC AK+R ++ G +V K L +
Sbjct: 128 ARALIESSLLNSSSDLV-DSLLDTYVNSSSTPLVFDLLVQCYAKIRYLELGFEVFKRLCD 186

Query: 486 NGFMLSVISYNTLLHVVQKSEKTCMVWGIYEYMIEKRIYPNEMTTRIMISALCKEGRLQR 307
            GF LSVI+ NTL+H   KS +  +VW IYE+ I+KRIYPNE T RIMIS LCKEGRL+ 
Sbjct: 187 CGFSLSVITLNTLIHFAAKSNRVDLVWRIYEFAIDKRIYPNETTIRIMISVLCKEGRLKE 246

Query: 306 FLDVVEKSHGKRSRPGVVVNTCLIYGMIEEGRIEDGLRLMKRMLQKNMILDTISCSLVIL 127
            +D++++ +GKR  P V+VNT L++ ++EE R+E+ + L+KR+L KNM++D I  S+V+ 
Sbjct: 247 VVDLLDRIYGKRCLPSVIVNTSLVFRVLEEKRVEESMSLLKRLLMKNMVVDVIGYSIVVY 306

Query: 126 AKVKTRDLESAWTVYDEMLRRGFEGNALVYDSFIGAYCE 10
           AK K  DLE A  V+DEM+RRGF  NA VY +F+   CE
Sbjct: 307 AKTKKGDLECARNVFDEMIRRGFSANAFVYTAFVRVCCE 345


>ref|NP_849849.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|122215314|sp|Q3ECH5.1|PP107_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g66345, mitochondrial; Flags: Precursor
           gi|332196377|gb|AEE34498.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 544

 Score =  263 bits (672), Expect = 6e-68
 Identities = 138/281 (49%), Positives = 188/281 (66%), Gaps = 1/281 (0%)
 Frame = -3

Query: 846 SFHFTPTIIQEILLHLKEPNDAKNALNFFHWSAKNSNTRHGXXXXXXXXXILAKSKLVRH 667
           S   + ++I+ ILL  K P  AK AL+FFHWS+   N RHG         IL K++L+  
Sbjct: 72  SIDLSDSLIETILLRFKNPETAKQALSFFHWSSHTRNLRHGIKSYALTIHILVKARLLID 131

Query: 666 ANALIESALRNENVFV-VLDSLIGSYKLVDSCPFVFDLFVQCCAKLRLIDKGLDVCKLLD 490
           A ALIES+L N      ++DSL+ +Y++  S P VFDL VQC AK+R ++ G DV K L 
Sbjct: 132 ARALIESSLLNSPPDSDLVDSLLDTYEISSSTPLVFDLLVQCYAKIRYLELGFDVFKRLC 191

Query: 489 ENGFMLSVISYNTLLHVVQKSEKTCMVWGIYEYMIEKRIYPNEMTTRIMISALCKEGRLQ 310
           + GF LSVI+ NTL+H   KS+   +VW IYE  I+KRIYPNE+T RIMI  LCKEGRL+
Sbjct: 192 DCGFTLSVITLNTLIHYSSKSKIDDLVWRIYECAIDKRIYPNEITIRIMIQVLCKEGRLK 251

Query: 309 RFLDVVEKSHGKRSRPGVVVNTCLIYGMIEEGRIEDGLRLMKRMLQKNMILDTISCSLVI 130
             +D++++  GKR  P V+VNT L++ ++EE RIE+ + L+KR+L KNM++DTI  S+V+
Sbjct: 252 EVVDLLDRICGKRCLPSVIVNTSLVFRVLEEMRIEESMSLLKRLLMKNMVVDTIGYSIVV 311

Query: 129 LAKVKTRDLESAWTVYDEMLRRGFEGNALVYDSFIGAYCEE 7
            AK K  DL SA  V+DEML+RGF  N+ VY  F+   CE+
Sbjct: 312 YAKAKEGDLVSARKVFDEMLQRGFSANSFVYTVFVRVCCEK 352