BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atropa21_contig00031065
         (796 letters)

Database: nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004233191.1| PREDICTED: pentatricopeptide repeat-containi...   180   4e-43
ref|XP_006353043.1| PREDICTED: pentatricopeptide repeat-containi...   178   2e-42
gb|EOY17575.1| Pentatricopeptide repeat-containing protein isofo...    57   1e-05
gb|EOY17574.1| Pentatricopeptide repeat-containing protein isofo...    57   1e-05

>ref|XP_004233191.1| PREDICTED: pentatricopeptide repeat-containing protein At1g30610,
           chloroplastic-like [Solanum lycopersicum]
          Length = 753

 Score =  180 bits (457), Expect = 4e-43
 Identities = 104/175 (59%), Positives = 120/175 (68%)
 Frame = -1

Query: 619 MVAIILTEALFGASPYTDFNGAFSSNYVRFPCFSSRFSLFETPILVNSMGNKRAKKKKRI 440
           MVAIILTEALFGAS  TDFNG F SNY+R PCFSS FS+ ETP L  S+G K+ KK+KR 
Sbjct: 1   MVAIILTEALFGASLCTDFNGVFGSNYLRCPCFSSGFSISETPTLEISLGKKKVKKQKRN 60

Query: 439 LGAGIVDCSLDYGIIDKEELEFKPSFDEYLKAMESVKEKKQKDSVNRKISEEKDKFDSVX 260
            G+ +V C LD  +I++EELEFKPSFDEYLKAMESVKEKKQ+DSV RK SEEK KF    
Sbjct: 61  AGSIVVSCGLD-NVINREELEFKPSFDEYLKAMESVKEKKQRDSVRRKKSEEKGKF---- 115

Query: 259 XXXXXXXXXXXXXXXXKCVESSDFVKLNEK*EGVGL*KRLVGSWNLERWRIRKER 95
                           KCVESSDFV+LNEK EGVG+ K   G      +R+ K +
Sbjct: 116 ----------VKSEKEKCVESSDFVELNEKYEGVGVVKESGGGGGKLEFRMVKNQ 160



 Score = 75.1 bits (183), Expect = 3e-11
 Identities = 46/89 (51%), Positives = 58/89 (65%), Gaps = 3/89 (3%)
 Frame = -3

Query: 260 KKEKRRKG*IWKV*EGEMCRKF*FCEVK*EVGRSWVVKEIGG---KLEFRKVENQKRESI 90
           +K+   KG   K  + +      F E+  +     VVKE GG   KLEFR V+NQKR+SI
Sbjct: 106 RKKSEEKGKFVKSEKEKCVESSDFVELNEKYEGVGVVKESGGGGGKLEFRMVKNQKRQSI 165

Query: 89  SKERHVVDEMVSMERVAFKSMDGDAYDKP 3
           SK+++V DEMVSMER AFK+MDGD YDKP
Sbjct: 166 SKDKNV-DEMVSMEREAFKTMDGDVYDKP 193


>ref|XP_006353043.1| PREDICTED: pentatricopeptide repeat-containing protein At1g30610,
           chloroplastic-like isoform X1 [Solanum tuberosum]
          Length = 752

 Score =  178 bits (452), Expect = 2e-42
 Identities = 103/175 (58%), Positives = 118/175 (67%)
 Frame = -1

Query: 619 MVAIILTEALFGASPYTDFNGAFSSNYVRFPCFSSRFSLFETPILVNSMGNKRAKKKKRI 440
           MVAIILTEALFGAS  TDFNG   SNY+R PCFSS FS+ ETP L  S+G KR KK+K  
Sbjct: 1   MVAIILTEALFGASLCTDFNGVLGSNYLRCPCFSSGFSISETPTLEISLGKKRVKKQKGN 60

Query: 439 LGAGIVDCSLDYGIIDKEELEFKPSFDEYLKAMESVKEKKQKDSVNRKISEEKDKFDSVX 260
            G  +V C LD  +I++EELEFKPSFDEYLKAMESVKEKKQ+DSV RK SEEK KF    
Sbjct: 61  AGFVVVSCGLD-NVINREELEFKPSFDEYLKAMESVKEKKQRDSVRRKKSEEKGKF---- 115

Query: 259 XXXXXXXXXXXXXXXXKCVESSDFVKLNEK*EGVGL*KRLVGSWNLERWRIRKER 95
                           KCVESSDFV+LNEK EGVG+ K   G   LE  ++  ++
Sbjct: 116 ----------VKSEKEKCVESSDFVELNEKFEGVGVVKESGGGGKLEFRKVENQK 160



 Score = 79.3 bits (194), Expect = 1e-12
 Identities = 48/88 (54%), Positives = 59/88 (67%), Gaps = 2/88 (2%)
 Frame = -3

Query: 260 KKEKRRKG*IWKV*EGEMCRKF*FCEVK*EVGRSWVVKEIGG--KLEFRKVENQKRESIS 87
           +K+   KG   K  + +      F E+  +     VVKE GG  KLEFRKVENQKR+SIS
Sbjct: 106 RKKSEEKGKFVKSEKEKCVESSDFVELNEKFEGVGVVKESGGGGKLEFRKVENQKRQSIS 165

Query: 86  KERHVVDEMVSMERVAFKSMDGDAYDKP 3
           K+++V DEMVSMER AFK+MDGD YDKP
Sbjct: 166 KDKNV-DEMVSMEREAFKTMDGDVYDKP 192


>gb|EOY17575.1| Pentatricopeptide repeat-containing protein isoform 2 [Theobroma
           cacao]
          Length = 719

 Score = 56.6 bits (135), Expect = 1e-05
 Identities = 34/65 (52%), Positives = 42/65 (64%)
 Frame = -1

Query: 475 MGNKRAKKKKRILGAGIVDCSLDYGIIDKEELEFKPSFDEYLKAMESVKEKKQKDSVNRK 296
           + +K + KKK      +VD     GI++KE L+FKPSFDEYLK MESV+EKKQ    NR 
Sbjct: 43  VASKNSSKKKWSFALRVVDSG--GGILEKE-LDFKPSFDEYLKTMESVREKKQSLKSNRG 99

Query: 295 ISEEK 281
            S EK
Sbjct: 100 NSIEK 104


>gb|EOY17574.1| Pentatricopeptide repeat-containing protein isoform 1 [Theobroma
           cacao]
          Length = 845

 Score = 56.6 bits (135), Expect = 1e-05
 Identities = 34/65 (52%), Positives = 42/65 (64%)
 Frame = -1

Query: 475 MGNKRAKKKKRILGAGIVDCSLDYGIIDKEELEFKPSFDEYLKAMESVKEKKQKDSVNRK 296
           + +K + KKK      +VD     GI++KE L+FKPSFDEYLK MESV+EKKQ    NR 
Sbjct: 43  VASKNSSKKKWSFALRVVDSG--GGILEKE-LDFKPSFDEYLKTMESVREKKQSLKSNRG 99

Query: 295 ISEEK 281
            S EK
Sbjct: 100 NSIEK 104