BLASTX nr result
ID: Atropa21_contig00030388
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Atropa21_contig00030388
(2924 letters)
Database: nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga... 119 5e-78
emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulga... 127 6e-61
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc... 96 8e-52
gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00... 97 5e-50
gb|AAC67331.1| putative non-LTR retroelement reverse transcripta... 81 1e-49
emb|CCA66140.1| hypothetical protein [Beta vulgaris subsp. vulga... 93 2e-49
emb|CCA66020.1| hypothetical protein [Beta vulgaris subsp. vulga... 95 1e-48
ref|XP_006598659.1| PREDICTED: uncharacterized protein LOC102659... 94 7e-47
emb|CCA66198.1| hypothetical protein [Beta vulgaris subsp. vulga... 90 2e-45
ref|XP_004240779.1| PREDICTED: uncharacterized protein LOC101256... 99 1e-44
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,... 97 5e-44
gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam... 80 2e-43
emb|CAB40051.1| putative protein [Arabidopsis thaliana] gi|72677... 80 2e-43
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta... 77 6e-43
emb|CCA65974.1| hypothetical protein [Beta vulgaris subsp. vulga... 82 7e-43
emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabid... 92 3e-42
emb|CCA66180.1| hypothetical protein [Beta vulgaris subsp. vulga... 82 3e-42
emb|CCA66178.1| hypothetical protein [Beta vulgaris subsp. vulga... 86 3e-42
emb|CCA66188.1| hypothetical protein [Beta vulgaris subsp. vulga... 82 3e-41
gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptas... 75 3e-41
>emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1114
Score = 119 bits (298), Expect(5) = 5e-78
Identities = 53/104 (50%), Positives = 74/104 (71%)
Frame = +2
Query: 2135 CITVCFIEGRCITDNILFTRELFKGYTRKGISAKCVLKVDLRKAYDTLDWYFLKRLMIEL 2314
C FI R I DNIL EL +GY R+ +S +CV+KVD+RKAYD+++W FL+ ++ EL
Sbjct: 548 CAQTGFIPERHIGDNILLATELIRGYNRRHVSPRCVIKVDIRKAYDSVEWVFLESMLKEL 607
Query: 2315 GFPFKFLMWIMKCISTVTYSLILKGGLTKSFKGQRGIRQGDPMS 2446
GFP F+ WIM C+ TV+YS++L G + F Q+G+RQGDP+S
Sbjct: 608 GFPSMFIRWIMACVKTVSYSILLNGIPSIPFDAQKGLRQGDPLS 651
Score = 82.8 bits (203), Expect(5) = 5e-78
Identities = 41/162 (25%), Positives = 83/162 (51%), Gaps = 1/162 (0%)
Frame = +2
Query: 1253 KPFRLYSTVLNHPEFEGIVQNFWRQDTRGMEMTRAWQXXXXXXXXXXXXNNYMASYQQ-K 1429
+PF+ + + + F +V+ W +M W ++ S +
Sbjct: 243 RPFKFLNFLADQNGFVEVVKEAWGSANHRFKMKNIWVRLQAVKRALKSFHSKKFSKAHCQ 302
Query: 1430 INQARQRLEIVQANIPLQPLCQNLLDQEKEAILEVEKWSNVEEQVMRQKSRASWIHCGDS 1609
+ + R++L VQA +P L ++EK+ I ++ KWS ++E +++QKSR W+ GDS
Sbjct: 303 VEELRRKLAAVQA-LPEVSQVSELQEEEKDLIAQLRKWSTIDESILKQKSRIQWLSLGDS 361
Query: 1610 NTKYFYAQWKLRTSTNSVNSIYNSAGVKVTDPIQVENQFISF 1735
N+K+F+ K+R + N + + N G ++T+ +++N+ +F
Sbjct: 362 NSKFFFTAIKVRKARNKIVLLQNDRGDQLTENTEIQNEICNF 403
Score = 82.0 bits (201), Expect(5) = 5e-78
Identities = 40/96 (41%), Positives = 54/96 (56%)
Frame = +1
Query: 1771 GVCVSRQQQLNLIRDVRPEEIMDAIKSMPKDKAPGVDGFPIEFFTKHWDEVKDDVIATVL 1950
G +S L++ + +EI A+ + KAPG+DGF FF K W +K ++ +L
Sbjct: 426 GAKLSATSCAQLVQPITIQEIDQALADIDDTKAPGLDGFNSVFFKKSWLVIKQEIYEGIL 485
Query: 1951 SFFRTGKMNSAINCTTVTLIPKVPSPTQVKDYRPIA 2058
FF G M+ INCT VTLIPK+ KDYRPIA
Sbjct: 486 DFFENGFMHKPINCTAVTLIPKIDEAKHAKDYRPIA 521
Score = 57.8 bits (138), Expect(5) = 5e-78
Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Frame = +1
Query: 958 SEDRI-GAPITQAETQGFRTFIDNLQLTPLKSTGWQLAWCNKRDERTRVYSKID*AFCNY 1134
++DR+ G +++AET R+F+ QL +TG +W NK R+ S+ID +F N
Sbjct: 147 AQDRLNGNDVSEAETSDLRSFVLKAQLLEAPTTGLFYSWNNKSIGADRISSRIDKSFVNV 206
Query: 1135 KWLLKFSHIEAHFLNPGVSDHSP 1203
W+ ++ + + G+SDHSP
Sbjct: 207 AWINQYPDVVVEYREAGISDHSP 229
Score = 42.4 bits (98), Expect(5) = 5e-78
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
Frame = +1
Query: 2446 PHLFVLVMEYLNM*LKQFRHDPNFNYHLKCERLQQAH------HLSFPSPDPATVSPFFH 2607
P LF L MEYL+ + DP FN+H KCER++ H L F D +++S
Sbjct: 652 PFLFALSMEYLSRCMGNMCKDPEFNFHPKCERIKLTHLMFADDLLMFARADASSISKIMA 711
Query: 2608 HLSSLT 2625
+S +
Sbjct: 712 AFNSFS 717
>emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1110
Score = 127 bits (319), Expect(3) = 6e-61
Identities = 55/99 (55%), Positives = 79/99 (79%)
Frame = +2
Query: 2150 FIEGRCITDNILFTRELFKGYTRKGISAKCVLKVDLRKAYDTLDWYFLKRLMIELGFPFK 2329
FI GR I DNIL EL +GYTRK +S +C++KVD+RKAYD+++W FL+ L+ E GFP +
Sbjct: 550 FIPGRHIADNILLASELIRGYTRKHMSPRCIMKVDIRKAYDSVEWSFLETLLYEFGFPSR 609
Query: 2330 FLMWIMKCISTVTYSLILKGGLTKSFKGQRGIRQGDPMS 2446
F+ WIM+C+STV+YS+++ G T+ F+ ++G+RQGDPMS
Sbjct: 610 FVGWIMECVSTVSYSVLVNGIPTQPFQARKGLRQGDPMS 648
Score = 94.7 bits (234), Expect(3) = 6e-61
Identities = 44/96 (45%), Positives = 62/96 (64%)
Frame = +1
Query: 1771 GVCVSRQQQLNLIRDVRPEEIMDAIKSMPKDKAPGVDGFPIEFFTKHWDEVKDDVIATVL 1950
G C+S Q + +LIR+V EI +A+ + DKAPG+DGF FF K W +K ++ A +
Sbjct: 423 GKCLSAQAKESLIREVASTEIDEALAGIGNDKAPGLDGFNAYFFKKSWGSIKQEIYAGIQ 482
Query: 1951 SFFRTGKMNSAINCTTVTLIPKVPSPTQVKDYRPIA 2058
FF +M+ INC VTL+PKV T+VK++RPIA
Sbjct: 483 EFFNNSRMHRPINCIVVTLLPKVQHATRVKEFRPIA 518
Score = 63.5 bits (153), Expect(3) = 6e-61
Identities = 45/214 (21%), Positives = 95/214 (44%), Gaps = 8/214 (3%)
Frame = +2
Query: 1130 IISGY*NLVTLKLTFSTLECQTIPPILIKCDP------GAQPRNLHPKPFRLYSTVLNHP 1291
I Y NLV L + ++ + Q +PP + P +P+ KPF+ + +
Sbjct: 196 IDKAYVNLVWLGM-YAEVSVQYLPPGISDHSPLLFNLMTGRPQG--GKPFKFMNVMAEQG 252
Query: 1292 EFEGIVQNFWRQDTRGMEMTRAW-QXXXXXXXXXXXXNNYMASYQQKINQARQRLEIVQA 1468
EF V+ W ++ W + +K+ R +L+ +Q+
Sbjct: 253 EFLETVEKAWNSVNGRFKLQAIWLNLKAVKRELKQMKTQKIGLAHEKVKNLRHQLQDLQS 312
Query: 1469 NIPLQPLCQNLLDQEKEAIL-EVEKWSNVEEQVMRQKSRASWIHCGDSNTKYFYAQWKLR 1645
+++ + ++I+ ++ WS++E+ +++QKSR +W+ GD+N+K F+ K R
Sbjct: 313 QDDFDH--NDIMQTDAKSIMNDLRHWSHIEDSILQQKSRITWLQQGDTNSKLFFTAVKAR 370
Query: 1646 TSTNSVNSIYNSAGVKVTDPIQVENQFISFLLSL 1747
+ N ++ + G + D +V+ + + F L
Sbjct: 371 HAINRIDMLNTEDGRVIQDADEVQEEILEFYKKL 404
Score = 68.6 bits (166), Expect = 2e-08
Identities = 39/112 (34%), Positives = 55/112 (49%), Gaps = 1/112 (0%)
Frame = +1
Query: 871 RHQLWDKLTHRLSSSD*MACVWRL**CAKSEDRI-GAPITQAETQGFRTFIDNLQLTPLK 1047
R LW L + D M + S DR+ G +T AET+ F+ F+ L +
Sbjct: 115 RKSLWSGLLQCVQQQDPMIIIGDFNAVCHSNDRLYGTLVTDAETEDFQQFLLQSNLIESR 174
Query: 1048 STGWQLAWCNKRDERTRVYSKID*AFCNYKWLLKFSHIEAHFLNPGVSDHSP 1203
ST +W N R RV S+ID A+ N WL ++ + +L PG+SDHSP
Sbjct: 175 STWSYYSWSNSSIGRDRVLSRIDKAYVNLVWLGMYAEVSVQYLPPGISDHSP 226
>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
Length = 1214
Score = 96.3 bits (238), Expect(5) = 8e-52
Identities = 42/99 (42%), Positives = 69/99 (69%)
Frame = +2
Query: 2150 FIEGRCITDNILFTRELFKGYTRKGISAKCVLKVDLRKAYDTLDWYFLKRLMIELGFPFK 2329
F++GR +T+N+L EL +G+ + IS++ VLKVDLRKA+D++ W F+ + P +
Sbjct: 558 FVKGRLLTENVLLATELVQGFGQANISSRGVLKVDLRKAFDSVGWGFIIETLKAANAPPR 617
Query: 2330 FLMWIMKCISTVTYSLILKGGLTKSFKGQRGIRQGDPMS 2446
F+ WI +CI++ ++S+ + G L FKG +G+RQGDP+S
Sbjct: 618 FVNWIKQCITSTSFSINVSGSLCGYFKGSKGLRQGDPLS 656
Score = 70.9 bits (172), Expect(5) = 8e-52
Identities = 35/94 (37%), Positives = 55/94 (58%)
Frame = +1
Query: 1777 CVSRQQQLNLIRDVRPEEIMDAIKSMPKDKAPGVDGFPIEFFTKHWDEVKDDVIATVLSF 1956
C +QL L +V +I ++P +K+PG DG+ EFF K W V +IA V F
Sbjct: 434 CDENTRQL-LEAEVSEADIKSEFFALPSNKSPGPDGYTSEFFKKTWSIVGPSLIAAVQEF 492
Query: 1957 FRTGKMNSAINCTTVTLIPKVPSPTQVKDYRPIA 2058
FR+G++ N T VT++PK P+ ++ ++RPI+
Sbjct: 493 FRSGRLLGQWNSTAVTMVPKKPNADRITEFRPIS 526
Score = 69.3 bits (168), Expect(5) = 8e-52
Identities = 44/168 (26%), Positives = 82/168 (48%), Gaps = 2/168 (1%)
Frame = +2
Query: 1253 KPFRLYSTVLNHPEFEGIVQNFW-RQDTRGMEM-TRAWQXXXXXXXXXXXXNNYMASYQQ 1426
KPF+L + +++HPEF ++ W R +G M T + + + + ++
Sbjct: 245 KPFKLSNFLMHHPEFIEKIRVTWDRLAYQGSAMFTLSKKSKFLKGTIRTFNREHYSGLEK 304
Query: 1427 KINQARQRLEIVQANIPLQPLCQNLLDQEKEAILEVEKWSNVEEQVMRQKSRASWIHCGD 1606
++ QA Q L+ Q N+ P L EKEA + + EE+ + QKSR W+ CGD
Sbjct: 305 RVVQAAQNLKTCQNNLLAAP-SSYLAGLEKEAHRSWAELALAEERFLCQKSRVLWLKCGD 363
Query: 1607 SNTKYFYAQWKLRTSTNSVNSIYNSAGVKVTDPIQVENQFISFLLSLW 1750
SNT +F+ R + N ++ + + G ++ + +++ + F L+
Sbjct: 364 SNTTFFHRMMTARRAINEIHYLLDQTGRRIENTDELQTHCVDFFKELF 411
Score = 32.3 bits (72), Expect(5) = 8e-52
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +3
Query: 2055 SLLHHIYKIITKVLTSRLRTVISDLVGASQSALLKG 2162
S + IYK+I+K+L RL ++ + SQSA +KG
Sbjct: 526 SCCNAIYKVISKLLARRLENILPLWISPSQSAFVKG 561
Score = 26.6 bits (57), Expect(5) = 8e-52
Identities = 21/78 (26%), Positives = 31/78 (39%)
Frame = +1
Query: 973 GAPITQAETQGFRTFIDNLQLTPLKSTGWQLAWCNKRDERTRVYSKID*AFCNYKWLLKF 1152
G+ IT+ + FR + ++ L G W N + E + KID N WL+
Sbjct: 157 GSRITRGMEE-FRECLLTSNISDLPFRGNHYTWWNNQ-ENNPIAKKIDRILVNDSWLIAS 214
Query: 1153 SHIEAHFLNPGVSDHSPN 1206
F SDH P+
Sbjct: 215 PLSYGSFCAMEFSDHCPS 232
>gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00078 [Arabidopsis
thaliana]
Length = 1253
Score = 96.7 bits (239), Expect(7) = 5e-50
Identities = 43/99 (43%), Positives = 66/99 (66%)
Frame = +2
Query: 2150 FIEGRCITDNILFTRELFKGYTRKGISAKCVLKVDLRKAYDTLDWYFLKRLMIELGFPFK 2329
F+ GR + +N+L EL +GY R+ I + +LKVDLRKA+D++ W F+ + +G P +
Sbjct: 512 FLPGRFLAENVLLATELVQGYNRQNIDPRGMLKVDLRKAFDSIRWDFIISALKAIGIPDR 571
Query: 2330 FLMWIMKCISTVTYSLILKGGLTKSFKGQRGIRQGDPMS 2446
F+ WI +CIST T+S+ + G FK RG+RQG+P+S
Sbjct: 572 FVYWITQCISTPTFSVCVNGNTGGFFKSTRGLRQGNPLS 610
Score = 67.8 bits (164), Expect(7) = 5e-50
Identities = 32/92 (34%), Positives = 50/92 (54%)
Frame = +1
Query: 1783 SRQQQLNLIRDVRPEEIMDAIKSMPKDKAPGVDGFPIEFFTKHWDEVKDDVIATVLSFFR 1962
S Q+ L ++I A S P +K G DGFP+EFF + W + +V V FF
Sbjct: 385 SHDQKKELAMSFSRQDIKSAFFSFPSNKTSGPDGFPVEFFKETWSVIGTEVTDAVSEFFT 444
Query: 1963 TGKMNSAINCTTVTLIPKVPSPTQVKDYRPIA 2058
+ + N TT+ LIPK+ + +++ D+RPI+
Sbjct: 445 SSVLLKQWNATTLVLIPKITNASKMNDFRPIS 476
Score = 55.8 bits (133), Expect(7) = 5e-50
Identities = 42/175 (24%), Positives = 77/175 (44%), Gaps = 10/175 (5%)
Frame = +2
Query: 1253 KPFRLYSTVLNHPEFEGIVQNFWRQ----DTRGMEMTRAWQXXXXXXXXXXXXNNYMASY 1420
+PFR Y+ +L +P+F +V W + +M++ + N ++
Sbjct: 196 RPFRFYNFLLQNPDFISLVGELWYSINVVGSSMFKMSKKLKALKNPIRTFSMEN--FSNL 253
Query: 1421 QQKINQARQRLEIVQANIPLQPLCQNLLDQEKEAILEVE---KWS---NVEEQVMRQKSR 1582
++++ +A + Q P N A LE+E KW EE Q+SR
Sbjct: 254 EKRVKEAHNLVLYRQNKTLSDPTIPN-------AALEMEAQRKWLILVKAEESFFCQRSR 306
Query: 1583 ASWIHCGDSNTKYFYAQWKLRTSTNSVNSIYNSAGVKVTDPIQVENQFISFLLSL 1747
+W+ GDSNT YF+ R + N+++ I + GVK+ + ++ I + +L
Sbjct: 307 VTWMGEGDSNTSYFHRMADSRKAVNTIHIIIDDNGVKIDTQLGIKEHCIEYFSNL 361
Score = 32.7 bits (73), Expect(7) = 5e-50
Identities = 13/31 (41%), Positives = 23/31 (74%)
Frame = +3
Query: 2070 IYKIITKVLTSRLRTVISDLVGASQSALLKG 2162
+YK+I ++LT+RL+ ++S ++ QSA L G
Sbjct: 485 LYKVIARLLTNRLQCLLSQVISPFQSAFLPG 515
Score = 31.2 bits (69), Expect(7) = 5e-50
Identities = 21/65 (32%), Positives = 26/65 (40%)
Frame = +1
Query: 1006 FRTFIDNLQLTPLKSTGWQLAWCNKRDERTRVYSKID*AFCNYKWLLKFSHIEAHFLNPG 1185
FR + +L L G W NK R V K+D N W +F A F P
Sbjct: 118 FRDCLFEAELCDLVFKGNTFTWWNKSATRP-VAKKLDRILVNESWCSRFPSAYAVFGEPD 176
Query: 1186 VSDHS 1200
SDH+
Sbjct: 177 FSDHA 181
Score = 22.3 bits (46), Expect(7) = 5e-50
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = +1
Query: 2446 PHLFVLVMEYLNM*LKQFRHDPNFNYHLKCERLQQAH 2556
P LFVL ME + L +YH K L +H
Sbjct: 611 PFLFVLAMEVFSSLLNSRFQAGYIHYHPKTSPLSISH 647
Score = 21.9 bits (45), Expect(7) = 5e-50
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +2
Query: 923 WLVCGDFNNVL 955
W++ GDFN VL
Sbjct: 88 WIMLGDFNQVL 98
>gb|AAC67331.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1449
Score = 81.3 bits (199), Expect(6) = 1e-49
Identities = 33/90 (36%), Positives = 58/90 (64%)
Frame = +2
Query: 2150 FIEGRCITDNILFTRELFKGYTRKGISAKCVLKVDLRKAYDTLDWYFLKRLMIELGFPFK 2329
F++ R + +N+L EL K Y + IS +C +K+D+ KA+D++ W FLK ++ L FP +
Sbjct: 980 FVKDRLLIENLLLATELVKDYHKDTISGRCAIKIDISKAFDSVQWSFLKNVLSALDFPPE 1039
Query: 2330 FLMWIMKCISTVTYSLILKGGLTKSFKGQR 2419
F+ W+M C++T ++S+ + G L F+ R
Sbjct: 1040 FVHWVMLCVTTASFSVQVNGELAGYFQSSR 1069
Score = 73.6 bits (179), Expect(6) = 1e-49
Identities = 35/85 (41%), Positives = 50/85 (58%)
Frame = +1
Query: 1804 LIRDVRPEEIMDAIKSMPKDKAPGVDGFPIEFFTKHWDEVKDDVIATVLSFFRTGKMNSA 1983
L V +EI A+ SMP DK+PG DG+ EF+ + WD + + + V SFF G +
Sbjct: 864 LTASVSAKEIRGALFSMPNDKSPGPDGYTSEFYKRAWDIIGAEFVLAVKSFFEKGFLPKG 923
Query: 1984 INCTTVTLIPKVPSPTQVKDYRPIA 2058
+N T + LIPK ++KDYRPI+
Sbjct: 924 VNTTILALIPKKLEAKEMKDYRPIS 948
Score = 60.5 bits (145), Expect(6) = 1e-49
Identities = 44/179 (24%), Positives = 81/179 (45%), Gaps = 6/179 (3%)
Frame = +2
Query: 1205 ILIKCDPGAQPRNLHPKPFRLYSTVLNHPEFEGIVQNFWRQDTRGMEMTRAW------QX 1366
I + + GAQ R KPF+ + V + EF+ +V+NFWR+ T + M+ + +
Sbjct: 650 INLNMNSGAQVRG--NKPFKFVNAVADMEEFKPLVENFWRE-TEPIHMSTSSLFRFTKKL 706
Query: 1367 XXXXXXXXXXXNNYMASYQQKINQARQRLEIVQANIPLQPLCQNLLDQEKEAILEVEKWS 1546
M + ++ +A L Q + P Q ++ E EA + ++ +
Sbjct: 707 KALKPKLRGLAKEKMGNLVKRTREAYLSLCQAQQSNSQNP-SQRAMEIESEAYVRWDRIA 765
Query: 1547 NVEEQVMRQKSRASWIHCGDSNTKYFYAQWKLRTSTNSVNSIYNSAGVKVTDPIQVENQ 1723
++EE+ ++Q S+ W+ GD N K F+ R + NS+ I G T ++N+
Sbjct: 766 SIEEKYLKQVSKLHWLKVGDKNNKTFHRAATARAAQNSIREIQKEDGSTATTKDDIKNE 824
Score = 37.0 bits (84), Expect(6) = 1e-49
Identities = 20/73 (27%), Positives = 32/73 (43%)
Frame = +1
Query: 979 PITQAETQGFRTFIDNLQLTPLKSTGWQLAWCNKRDERTRVYSKID*AFCNYKWLLKFSH 1158
P + + F++ ++ + L S G WCNKRD ++ K+D N W + +
Sbjct: 574 PAVTSGMRDFQSLVNYCSFSDLASHGPLFTWCNKRD-NDPIWKKLDRVMVNEAWKMVYPQ 632
Query: 1159 IEAHFLNPGVSDH 1197
F G SDH
Sbjct: 633 SYNVFEAGGCSDH 645
Score = 32.7 bits (73), Expect(6) = 1e-49
Identities = 12/30 (40%), Positives = 23/30 (76%)
Frame = +3
Query: 2070 IYKIITKVLTSRLRTVISDLVGASQSALLK 2159
IYK+I+K++ +RL+ V+ + + +QSA +K
Sbjct: 953 IYKVISKIIANRLKHVLPNFIAGNQSAFVK 982
Score = 22.7 bits (47), Expect(6) = 1e-49
Identities = 8/26 (30%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Frame = +2
Query: 887 INSHIGSQVQTE--WLVCGDFNNVLN 958
+ H+ S + + W++ GDFN +L+
Sbjct: 538 LRDHMDSPIIRDKPWIIFGDFNEILD 563
>emb|CCA66140.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1381
Score = 92.8 bits (229), Expect(5) = 2e-49
Identities = 47/104 (45%), Positives = 66/104 (63%)
Frame = +2
Query: 2150 FIEGRCITDNILFTRELFKGYTRKGISAKCVLKVDLRKAYDTLDWYFLKRLMIELGFPFK 2329
+IEGR I D L EL RK I A +LK+D KAYD++ W FL+ ++ E+ FP +
Sbjct: 540 YIEGRSILDGALIASELIDHCKRKSIEA-ALLKLDFHKAYDSISWSFLEWVLKEMNFPDQ 598
Query: 2330 FLMWIMKCISTVTYSLILKGGLTKSFKGQRGIRQGDPMSLTYLF 2461
+ WIM C+ST S+++ G FK QRG+RQGDP+S ++LF
Sbjct: 599 WCKWIMNCVSTAAVSILVNGSPCAPFKLQRGLRQGDPLS-SFLF 641
Score = 67.4 bits (163), Expect(5) = 2e-49
Identities = 33/93 (35%), Positives = 48/93 (51%)
Frame = +1
Query: 1780 VSRQQQLNLIRDVRPEEIMDAIKSMPKDKAPGVDGFPIEFFTKHWDEVKDDVIATVLSFF 1959
++ Q +L + +EI +A+ S DKAPG DGF F W+ VK D+ A V F
Sbjct: 416 ITDDQASDLTQPFSNKEIDEAVSSCAADKAPGPDGFNFRFIKSAWETVKSDIYAMVRKFH 475
Query: 1960 RTGKMNSAINCTTVTLIPKVPSPTQVKDYRPIA 2058
+ + N +TLI K+ +P DYRPI+
Sbjct: 476 DSSTLPQGCNIAYITLIQKIDNPKNFNDYRPIS 508
Score = 47.8 bits (112), Expect(5) = 2e-49
Identities = 35/167 (20%), Positives = 73/167 (43%)
Frame = +2
Query: 1232 QPRNLHPKPFRLYSTVLNHPEFEGIVQNFWRQDTRGMEMTRAWQXXXXXXXXXXXXNNYM 1411
+ +N PKPFR + L+ P IV+ W+ + ++ +
Sbjct: 230 EDKNWGPKPFRFQNCWLSDPNCLKIVKEVWQASSG---VSAVGKLKAVRKRLKVWNQEEY 286
Query: 1412 ASYQQKINQARQRLEIVQANIPLQPLCQNLLDQEKEAILEVEKWSNVEEQVMRQKSRASW 1591
+ +I++ ++ + L ++ L+++++A +E+ KW E Q +R SW
Sbjct: 287 GNIDNRISKMENLIQQYDEISNQRILTEDELEEKQKAQVELWKWMKRREVYWAQNARISW 346
Query: 1592 IHCGDSNTKYFYAQWKLRTSTNSVNSIYNSAGVKVTDPIQVENQFIS 1732
+ GD NT++F+ + NS+ I G + DP ++ + +S
Sbjct: 347 LKEGDRNTRFFHTIASNKRRKNSIICI-EVKGKESGDPQIIKREAVS 392
Score = 45.8 bits (107), Expect(5) = 2e-49
Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Frame = +1
Query: 958 SEDRIGAPITQAETQGFRTFIDNLQLTPLKSTGWQLAWCNKRDERTRVYSKID*AFCNYK 1137
S +R +Q+E FR F+ NLQL + S+ W + S +D F N +
Sbjct: 148 SSERRSLIASQSEMTKFRDFVQNLQLLEIPSSSGGFTWFRGNSK-----SLLDRLFINPE 202
Query: 1138 WLLKFSHIEAHFLNPGVSDHSP----NSDK 1215
WL+ F ++ L G+SDH P N DK
Sbjct: 203 WLILFPGLKLSLLMRGLSDHCPLLVHNEDK 232
Score = 33.5 bits (75), Expect(5) = 2e-49
Identities = 17/40 (42%), Positives = 27/40 (67%)
Frame = +3
Query: 2055 SLLHHIYKIITKVLTSRLRTVISDLVGASQSALLKGDASL 2174
S++ IYKII K+L RL+ VI+ L+G Q + ++G + L
Sbjct: 508 SMVGCIYKIIAKLLARRLQGVINSLIGPLQFSYIEGRSIL 547
>emb|CCA66020.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1365
Score = 95.1 bits (235), Expect(4) = 1e-48
Identities = 48/106 (45%), Positives = 68/106 (64%), Gaps = 2/106 (1%)
Frame = +2
Query: 2150 FIEGRCITDNILFTRELFK--GYTRKGISAKCVLKVDLRKAYDTLDWYFLKRLMIELGFP 2323
F+ GR I+DN L E+ +KG LK+D+ KAYD +DW FL L+ ++GFP
Sbjct: 553 FVPGRLISDNCLIAHEVVNLIKQRKKGTHFLAALKIDMFKAYDKVDWDFLFWLLTQMGFP 612
Query: 2324 FKFLMWIMKCISTVTYSLILKGGLTKSFKGQRGIRQGDPMSLTYLF 2461
+ WIM+C++TV+YS+I+ G T FK G+RQGDP+S +YLF
Sbjct: 613 SFYRQWIMQCVTTVSYSIIVNGEPTTRFKPSCGLRQGDPLS-SYLF 657
Score = 72.0 bits (175), Expect(4) = 1e-48
Identities = 37/93 (39%), Positives = 51/93 (54%)
Frame = +1
Query: 1780 VSRQQQLNLIRDVRPEEIMDAIKSMPKDKAPGVDGFPIEFFTKHWDEVKDDVIATVLSFF 1959
+ Q+ +LI+ V EE+ + + M KAPG DG P F+ KHW V +D+ V FF
Sbjct: 429 IDLMQREDLIKPVTREEVRNVVFQMGSLKAPGPDGIPAIFYQKHWSIVGEDIWRAVSHFF 488
Query: 1960 RTGKMNSAINCTTVTLIPKVPSPTQVKDYRPIA 2058
TG + N T + LIPKV P Q +RPI+
Sbjct: 489 TTGYILQEWNQTNICLIPKVERPEQACQFRPIS 521
Score = 50.1 bits (118), Expect(4) = 1e-48
Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Frame = +1
Query: 1006 FRTFIDNLQLTPLKSTGWQLAWCNKRDERTRVYSKID*AFCNYKWLLKFSHIEAHFLNPG 1185
F + D L L+ + G WCN R E RVY ++D A+ WL ++S EA LN
Sbjct: 165 FSQWRDQLGLSEINFQGQNFTWCNNRSEPERVYERLDRAYATEDWLHRYS--EARILNMP 222
Query: 1186 --VSDHSP 1203
+SDHSP
Sbjct: 223 ILISDHSP 230
Score = 47.4 bits (111), Expect(4) = 1e-48
Identities = 42/190 (22%), Positives = 83/190 (43%), Gaps = 6/190 (3%)
Frame = +2
Query: 1202 PILIKCDPGAQPRNLHPKP---FRLYSTVLNHPEFEGIVQNFWRQDTRGMEMTR-AWQXX 1369
PIL+ P ++PK ++ S L+ E E ++ W+ G M A +
Sbjct: 230 PILLISSP------IYPKKKSTIKMESWCLDFKEVEILISKHWKVSYSGSPMYEVAQKCK 283
Query: 1370 XXXXXXXXXXNNYMASYQQKINQARQRLEIVQANIPLQPLCQNLLDQE--KEAILEVEKW 1543
NY + + + +QAN+P+ LD+E E+I ++E
Sbjct: 284 SVRYKLFQWCKNYKSENNINWEEFLSKCGEIQANLPISG--GGKLDEEIKDESIRKLE-- 339
Query: 1544 SNVEEQVMRQKSRASWIHCGDSNTKYFYAQWKLRTSTNSVNSIYNSAGVKVTDPIQVENQ 1723
V+ + +Q+ + W D+N+++F+ + K R N + I NSAG V+ ++ +
Sbjct: 340 --VQLKFWQQRVKCKWKAWEDTNSRWFFRKAKRRKQKNEILVIKNSAGKWVSSKQDIQGE 397
Query: 1724 FISFLLSLWE 1753
F+ + +++
Sbjct: 398 FLGYFADIFQ 407
>ref|XP_006598659.1| PREDICTED: uncharacterized protein LOC102659749 [Glycine max]
Length = 686
Score = 94.0 bits (232), Expect(3) = 7e-47
Identities = 44/100 (44%), Positives = 67/100 (67%)
Frame = +2
Query: 2150 FIEGRCITDNILFTRELFKGYTRKGISAKCVLKVDLRKAYDTLDWYFLKRLMIELGFPFK 2329
F+ G+ I ++IL EL KGYTRKG + +C++++DL+KAYD +DW L+ ++ E G P K
Sbjct: 273 FVPGQVIHNHILLATELMKGYTRKGGTPRCIMQIDLQKAYDMVDWDALEGVLTEFGLPKK 332
Query: 2330 FLMWIMKCISTVTYSLILKGGLTKSFKGQRGIRQGDPMSL 2449
F+ W+MK I+TV Y + G L+ + +R IR GD S+
Sbjct: 333 FIGWVMKVITTVNYRFNINGELSNVLEAKRDIR-GDEKSI 371
Score = 72.4 bits (176), Expect(3) = 7e-47
Identities = 37/151 (24%), Positives = 72/151 (47%)
Frame = +2
Query: 1295 FEGIVQNFWRQDTRGMEMTRAWQXXXXXXXXXXXXNNYMASYQQKINQARQRLEIVQANI 1474
+E +VQN W + +G M WQ M + +Q++ +AR+ L++ Q I
Sbjct: 7 YEEVVQNSWNRPIKGTPMHVLWQKLQRLKPELVQLGKSMTNARQELVKARRDLDLAQNAI 66
Query: 1475 PLQPLCQNLLDQEKEAILEVEKWSNVEEQVMRQKSRASWIHCGDSNTKYFYAQWKLRTST 1654
+ NL+D K+ V W+ +E ++RQ+++ W+ GD N +F++ K +
Sbjct: 67 THNRMDGNLIDIVKKCTERVINWNEMEGNMLRQRAKVDWLRMGDENNAFFHSIIKAKHHN 126
Query: 1655 NSVNSIYNSAGVKVTDPIQVENQFISFLLSL 1747
S++ + G +T+ + N+ + F L
Sbjct: 127 ISMSILQKGDGTILTEQSDIHNEVMEFYRKL 157
Score = 72.0 bits (175), Expect(3) = 7e-47
Identities = 40/96 (41%), Positives = 52/96 (54%)
Frame = +1
Query: 1771 GVCVSRQQQLNLIRDVRPEEIMDAIKSMPKDKAPGVDGFPIEFFTKHWDEVKDDVIATVL 1950
G ++ Q L V EI+ A++ + KAPG+DG+ +FF W VK D IA +
Sbjct: 176 GKQITFDQGAFLTASVTEVEIVKALQGIGDLKAPGIDGYGAKFFKNSWHIVKKDFIAAMN 235
Query: 1951 SFFRTGKMNSAINCTTVTLIPKVPSPTQVKDYRPIA 2058
FF G + N T VTLIPK + VKDYRPIA
Sbjct: 236 EFFEKGTLLKVFNSTLVTLIPKSITAKTVKDYRPIA 271
>emb|CCA66198.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1381
Score = 89.7 bits (221), Expect(5) = 2e-45
Identities = 44/99 (44%), Positives = 64/99 (64%)
Frame = +2
Query: 2150 FIEGRCITDNILFTRELFKGYTRKGISAKCVLKVDLRKAYDTLDWYFLKRLMIELGFPFK 2329
FIEGR I D+IL ELF+ R+ A +LK+D KA+D++ W FL + ++GFP +
Sbjct: 540 FIEGRQILDSILIASELFESCKRRK-KATVMLKIDFHKAFDSVSWSFLDWTLSQMGFPPR 598
Query: 2330 FLMWIMKCISTVTYSLILKGGLTKSFKGQRGIRQGDPMS 2446
+ WI C+S+ S++L G + FK QRG+RQGDP+S
Sbjct: 599 WKKWISSCVSSAAASVLLNGSPSLPFKLQRGLRQGDPLS 637
Score = 63.5 bits (153), Expect(5) = 2e-45
Identities = 31/93 (33%), Positives = 48/93 (51%)
Frame = +1
Query: 1780 VSRQQQLNLIRDVRPEEIMDAIKSMPKDKAPGVDGFPIEFFTKHWDEVKDDVIATVLSFF 1959
+S Q ++ EI +A+ S K+PG DGF +F WD +K D + + F+
Sbjct: 416 LSESQAFSISAPFSTTEIDEAVASCNPSKSPGPDGFNFKFIKASWDLIKHDFYSIIQEFW 475
Query: 1960 RTGKMNSAINCTTVTLIPKVPSPTQVKDYRPIA 2058
TG + N + LI K+ SP+ KD+RPI+
Sbjct: 476 HTGILPRGSNVAFIALIAKIESPSGFKDFRPIS 508
Score = 56.6 bits (135), Expect(5) = 2e-45
Identities = 39/167 (23%), Positives = 72/167 (43%)
Frame = +2
Query: 1250 PKPFRLYSTVLNHPEFEGIVQNFWRQDTRGMEMTRAWQXXXXXXXXXXXXNNYMASYQQK 1429
P+PF+ L+H IV+ W Q E+T + + +
Sbjct: 236 PRPFKFQDVWLSHKGCMEIVEKAWIQSK---ELTLMQKLKKVKLDLKTWNSESFGNIDAN 292
Query: 1430 INQARQRLEIVQANIPLQPLCQNLLDQEKEAILEVEKWSNVEEQVMRQKSRASWIHCGDS 1609
I ++ + + L + +A LE+ +W +E Q+SR W+ GD
Sbjct: 293 ILLREAEIQKWDSEANSRDLEPEEIKTRAQAQLELWEWLKKKEIYWAQQSRIKWLKSGDR 352
Query: 1610 NTKYFYAQWKLRTSTNSVNSIYNSAGVKVTDPIQVENQFISFLLSLW 1750
NTK+F+ +R S N+++SI G K+ DPI ++ + + + +L+
Sbjct: 353 NTKFFHICASIRRSKNNISSIL-LQGKKIEDPIIIKEEAVKYFKNLF 398
Score = 41.6 bits (96), Expect(5) = 2e-45
Identities = 25/82 (30%), Positives = 37/82 (45%)
Frame = +1
Query: 958 SEDRIGAPITQAETQGFRTFIDNLQLTPLKSTGWQLAWCNKRDERTRVYSKID*AFCNYK 1137
S+DR I ++ + FR FI+NL+L + W R SK+D +
Sbjct: 148 SKDRGSHQIDESSSLKFRNFINNLRLIEVSPVEGWYTWF-----RGNSRSKLDRVLVQAE 202
Query: 1138 WLLKFSHIEAHFLNPGVSDHSP 1203
W+ KF + LN +SDH P
Sbjct: 203 WIEKFPALAVSILNRSISDHCP 224
Score = 21.9 bits (45), Expect(5) = 2e-45
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +2
Query: 926 LVCGDFNNVLNQK 964
L+ GDFN VL+ K
Sbjct: 137 LIAGDFNEVLSSK 149
>ref|XP_004240779.1| PREDICTED: uncharacterized protein LOC101256493 [Solanum
lycopersicum]
Length = 441
Score = 99.0 bits (245), Expect(3) = 1e-44
Identities = 47/97 (48%), Positives = 65/97 (67%)
Frame = +1
Query: 1768 KGVCVSRQQQLNLIRDVRPEEIMDAIKSMPKDKAPGVDGFPIEFFTKHWDEVKDDVIATV 1947
+G +SRQ ++ L + +EI++A+KS+ +KAPG+DG+ FF W ++ DVI V
Sbjct: 330 RGPVLSRQHRIQLCATITDQEIVEALKSIGNEKAPGIDGYNALFFKHTWKIIEHDVIDAV 389
Query: 1948 LSFFRTGKMNSAINCTTVTLIPKVPSPTQVKDYRPIA 2058
SFF TGK+ NCT VT+IPKV SP VK+YRPIA
Sbjct: 390 KSFFTTGKLFKPFNCTLVTVIPKVHSPKNVKEYRPIA 426
Score = 73.9 bits (180), Expect(3) = 1e-44
Identities = 44/164 (26%), Positives = 80/164 (48%), Gaps = 1/164 (0%)
Frame = +2
Query: 1259 FRLYSTVLNHPEFEGIVQNFWRQDTRGMEMTRAWQXXXXXXXXXXXXNNYMASY-QQKIN 1435
F+ ++ H F +V+ W+Q+ + + W N Y +I
Sbjct: 150 FKFFNIWTEHDLFLDLVEKVWKQEKDRDAIKKVWYKLKALQPVLKQLNRKEFKYISNQIE 209
Query: 1436 QARQRLEIVQANIPLQPLCQNLLDQEKEAILEVEKWSNVEEQVMRQKSRASWIHCGDSNT 1615
+AR L +Q + Q L+ +EKE + ++EK S ++E +RQK RA WI GD+N
Sbjct: 210 EARNELIDIQNQLCHQAK-DELVTKEKELLTKLEKLSLIKESALRQKVRAKWIKLGDANN 268
Query: 1616 KYFYAQWKLRTSTNSVNSIYNSAGVKVTDPIQVENQFISFLLSL 1747
KY + K R ++ + + G K+++P +++++F+ F SL
Sbjct: 269 KYLSSVIKERNHKKNIRILMSLDGRKLSEPQEIQDEFVLFDKSL 312
Score = 58.2 bits (139), Expect(3) = 1e-44
Identities = 29/83 (34%), Positives = 45/83 (54%)
Frame = +1
Query: 952 AKSEDRIGAPITQAETQGFRTFIDNLQLTPLKSTGWQLAWCNKRDERTRVYSKID*AFCN 1131
+K + GAP+ + E + F + + + L+ G W NK+ RV +ID AF N
Sbjct: 51 SKGDTLAGAPVNENEIKDFADCVKAMGIHELQWKGSYYTWSNKQIGNARVSRRIDRAFGN 110
Query: 1132 YKWLLKFSHIEAHFLNPGVSDHS 1200
+W+ K+ H+ + NPGVSDHS
Sbjct: 111 DEWMDKWGHVILEYGNPGVSDHS 133
>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
[Arabidopsis thaliana]
Length = 1164
Score = 97.4 bits (241), Expect(5) = 5e-44
Identities = 47/104 (45%), Positives = 66/104 (63%)
Frame = +2
Query: 2150 FIEGRCITDNILFTRELFKGYTRKGISAKCVLKVDLRKAYDTLDWYFLKRLMIELGFPFK 2329
F+ GR +N+L EL GY +K I+ +LKVDLRKA+D++ W F+ + L P K
Sbjct: 456 FMPGRLFLENVLLATELVHGYNKKNIAPSSMLKVDLRKAFDSVRWDFIVSALRALNVPEK 515
Query: 2330 FLMWIMKCISTVTYSLILKGGLTKSFKGQRGIRQGDPMSLTYLF 2461
F WI++C+ST ++S+IL G F +G+RQGDPMS YLF
Sbjct: 516 FTCWILECLSTASFSVILNGHSAGHFWSSKGLRQGDPMS-PYLF 558
Score = 68.6 bits (166), Expect(5) = 5e-44
Identities = 34/92 (36%), Positives = 53/92 (57%)
Frame = +1
Query: 1783 SRQQQLNLIRDVRPEEIMDAIKSMPKDKAPGVDGFPIEFFTKHWDEVKDDVIATVLSFFR 1962
S QQ++L E+I +A S+P++KA G DGF EFF W + +V + FF
Sbjct: 333 SPAQQVSLDTPFSSEQIKNAFFSLPRNKASGPDGFSPEFFCACWPIIGGEVTEAIHEFFT 392
Query: 1963 TGKMNSAINCTTVTLIPKVPSPTQVKDYRPIA 2058
+GK+ N T + LIPK+ + + + D+RPI+
Sbjct: 393 SGKLLKQWNATNLVLIPKITNASSMSDFRPIS 424
Score = 44.3 bits (103), Expect(5) = 5e-44
Identities = 40/180 (22%), Positives = 72/180 (40%), Gaps = 8/180 (4%)
Frame = +2
Query: 1229 AQPRNLHPKPFRLYSTVLNHPEFEGIVQNFW-RQDTRGMEMTR-AWQXXXXXXXXXXXXN 1402
A PR+ KPFR + +L F ++ W G M R + +
Sbjct: 138 ASPRS--KKPFRFNNFLLKDENFLSLICLKWFSTSVTGSAMYRVSVKLKALKKVIRDFSR 195
Query: 1403 NYMASYQQKINQARQRLEIVQANIPLQPLCQNLLDQEKEAILEVE---KW---SNVEEQV 1564
+ + +++ +A L + Q+ + P N A +E E KW + E
Sbjct: 196 DNYSDIEKRTKEAHDALLLAQSVLLASPCPSN-------AAIEAETQRKWRILAEAEASF 248
Query: 1565 MRQKSRASWIHCGDSNTKYFYAQWKLRTSTNSVNSIYNSAGVKVTDPIQVENQFISFLLS 1744
Q+SR +W+ GD N+ YF+ R S N ++ + + G ++ +EN + + S
Sbjct: 249 FYQRSRVNWLREGDMNSSYFHKMASARQSLNHIHFLSDPVGDRIEGQQNLENHCVEYFQS 308
Score = 36.2 bits (82), Expect(5) = 5e-44
Identities = 26/68 (38%), Positives = 28/68 (41%)
Frame = +1
Query: 997 TQGFRTFIDNLQLTPLKSTGWQLAWCNKRDERTRVYSKID*AFCNYKWLLKFSHIEAHFL 1176
T+ FR I LT L G W NKR R V K+D N KW F F
Sbjct: 63 TRIFRETILLASLTDLSFRGNTFTWWNKRS-RAPVAKKLDRILVNDKWTTTFPSSLGLFG 121
Query: 1177 NPGVSDHS 1200
P SDHS
Sbjct: 122 EPDFSDHS 129
Score = 22.3 bits (46), Expect(5) = 5e-44
Identities = 7/16 (43%), Positives = 10/16 (62%)
Frame = +2
Query: 911 VQTEWLVCGDFNNVLN 958
+ W V GDFN +L+
Sbjct: 32 IDKPWTVLGDFNQILH 47
>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
42.57) [Arabidopsis thaliana]
Length = 1662
Score = 79.7 bits (195), Expect(4) = 2e-43
Identities = 43/106 (40%), Positives = 64/106 (60%), Gaps = 2/106 (1%)
Frame = +2
Query: 2150 FIEGRCITDNILFTRELFKGY-TRKGISAKCV-LKVDLRKAYDTLDWYFLKRLMIELGFP 2323
FI GR + DN++ E+ TRK +S + +K D+ KAYD ++W FL+ M GF
Sbjct: 922 FIPGRLVNDNVMIAHEMMHSLKTRKRVSQSYMAVKTDVSKAYDRVEWNFLETTMRLFGFS 981
Query: 2324 FKFLMWIMKCISTVTYSLILKGGLTKSFKGQRGIRQGDPMSLTYLF 2461
++ WIM + +V YS+++ G + + QRGIRQGDP+S YLF
Sbjct: 982 ETWIKWIMGAVKSVNYSVLVNGIPHGTIQPQRGIRQGDPLS-PYLF 1026
Score = 76.3 bits (186), Expect(4) = 2e-43
Identities = 40/93 (43%), Positives = 54/93 (58%)
Frame = +1
Query: 1780 VSRQQQLNLIRDVRPEEIMDAIKSMPKDKAPGVDGFPIEFFTKHWDEVKDDVIATVLSFF 1959
V+ Q +L +D+ EI +AI + DKAPG DG F+ W+ V DVI V FF
Sbjct: 798 VTEQINDDLTKDLSDLEIYNAICHIGDDKAPGPDGLTARFYKSCWEIVGPDVIKEVKIFF 857
Query: 1960 RTGKMNSAINCTTVTLIPKVPSPTQVKDYRPIA 2058
RT M +IN T + +IPK+ +P + DYRPIA
Sbjct: 858 RTSYMKQSINHTNICMIPKITNPETLSDYRPIA 890
Score = 49.7 bits (117), Expect(4) = 2e-43
Identities = 40/150 (26%), Positives = 63/150 (42%), Gaps = 4/150 (2%)
Frame = +2
Query: 1253 KPFRLYSTVLNHPEFEGIVQNFWRQDTRGMEMTRAWQXXXXXXXXXXXXNNYMASYQQKI 1432
+PFR +L P F+ V+ W + G Q MA + K
Sbjct: 619 RPFRFDKRLLEVPHFKTYVKAGWNKAINGQRKHLPDQVRTC--------RQAMAKLKHKS 670
Query: 1433 NQARQRLEIVQANIPLQPLCQNLLDQEKEAILEVEKWSNV----EEQVMRQKSRASWIHC 1600
N R+ I Q L ++ E+ I +++ V EE+ +QKSR W+
Sbjct: 671 N-LNSRIRINQLQAALDKAMSSVNRTERRTISHIQRELTVAYRDEERYWQQKSRNQWMKE 729
Query: 1601 GDSNTKYFYAQWKLRTSTNSVNSIYNSAGV 1690
GD NT++F+A K R S N + +I + G+
Sbjct: 730 GDRNTEFFHACTKTRFSVNRLVTIKDEEGM 759
Score = 40.8 bits (94), Expect(4) = 2e-43
Identities = 31/114 (27%), Positives = 48/114 (42%), Gaps = 2/114 (1%)
Frame = +1
Query: 868 QRHQLWDKLTHRLSS-SD*MACVWRL**CAKSEDRIGAPITQAET-QGFRTFIDNLQLTP 1041
+RH LW + + +D + + ++IG P T +GFR + L
Sbjct: 493 ERHSLWTHFENLSKTRNDPWILIGDFNEILSNNEKIGGPQRDEWTFRGFRNMVSTCDLKD 552
Query: 1042 LKSTGWQLAWCNKRDERTRVYSKID*AFCNYKWLLKFSHIEAHFLNPGVSDHSP 1203
++S G + +W +R T V +D AF N + F E FL SDH P
Sbjct: 553 IRSIGDRFSWVGERHSHT-VKCCLDRAFINSEGAFLFPFAELEFLEFTGSDHKP 605
>emb|CAB40051.1| putative protein [Arabidopsis thaliana] gi|7267781|emb|CAB81184.1|
putative protein [Arabidopsis thaliana]
Length = 1294
Score = 79.7 bits (195), Expect(4) = 2e-43
Identities = 43/106 (40%), Positives = 64/106 (60%), Gaps = 2/106 (1%)
Frame = +2
Query: 2150 FIEGRCITDNILFTRELFKGY-TRKGISAKCV-LKVDLRKAYDTLDWYFLKRLMIELGFP 2323
FI GR + DN++ E+ TRK +S + +K D+ KAYD ++W FL+ M GF
Sbjct: 902 FIPGRLVNDNVMIAHEMMHSLKTRKRVSQSYMAVKTDVSKAYDRVEWNFLETTMRLFGFS 961
Query: 2324 FKFLMWIMKCISTVTYSLILKGGLTKSFKGQRGIRQGDPMSLTYLF 2461
++ WIM + +V YS+++ G + + QRGIRQGDP+S YLF
Sbjct: 962 ETWIKWIMGAVKSVNYSVLVNGIPHGTIQPQRGIRQGDPLS-PYLF 1006
Score = 76.3 bits (186), Expect(4) = 2e-43
Identities = 40/93 (43%), Positives = 54/93 (58%)
Frame = +1
Query: 1780 VSRQQQLNLIRDVRPEEIMDAIKSMPKDKAPGVDGFPIEFFTKHWDEVKDDVIATVLSFF 1959
V+ Q +L +D+ EI +AI + DKAPG DG F+ W+ V DVI V FF
Sbjct: 778 VTEQINDDLTKDLSDLEIYNAICHIGDDKAPGPDGLTARFYKSCWEIVGPDVIKEVKIFF 837
Query: 1960 RTGKMNSAINCTTVTLIPKVPSPTQVKDYRPIA 2058
RT M +IN T + +IPK+ +P + DYRPIA
Sbjct: 838 RTSYMKQSINHTNICMIPKITNPETLSDYRPIA 870
Score = 49.7 bits (117), Expect(4) = 2e-43
Identities = 40/150 (26%), Positives = 63/150 (42%), Gaps = 4/150 (2%)
Frame = +2
Query: 1253 KPFRLYSTVLNHPEFEGIVQNFWRQDTRGMEMTRAWQXXXXXXXXXXXXNNYMASYQQKI 1432
+PFR +L P F+ V+ W + G Q MA + K
Sbjct: 599 RPFRFDKRLLEVPHFKTYVKAGWNKAINGQRKHLPDQVRTC--------RQAMAKLKHKS 650
Query: 1433 NQARQRLEIVQANIPLQPLCQNLLDQEKEAILEVEKWSNV----EEQVMRQKSRASWIHC 1600
N R+ I Q L ++ E+ I +++ V EE+ +QKSR W+
Sbjct: 651 N-LNSRIRINQLQAALDKAMSSVNRTERRTISHIQRELTVAYRDEERYWQQKSRNQWMKE 709
Query: 1601 GDSNTKYFYAQWKLRTSTNSVNSIYNSAGV 1690
GD NT++F+A K R S N + +I + G+
Sbjct: 710 GDRNTEFFHACTKTRFSVNRLVTIKDEEGM 739
Score = 40.8 bits (94), Expect(4) = 2e-43
Identities = 31/114 (27%), Positives = 48/114 (42%), Gaps = 2/114 (1%)
Frame = +1
Query: 868 QRHQLWDKLTHRLSS-SD*MACVWRL**CAKSEDRIGAPITQAET-QGFRTFIDNLQLTP 1041
+RH LW + + +D + + ++IG P T +GFR + L
Sbjct: 473 ERHSLWTHFENLSKTRNDPWILIGDFNEILSNNEKIGGPQRDEWTFRGFRNMVSTCDLKD 532
Query: 1042 LKSTGWQLAWCNKRDERTRVYSKID*AFCNYKWLLKFSHIEAHFLNPGVSDHSP 1203
++S G + +W +R T V +D AF N + F E FL SDH P
Sbjct: 533 IRSIGDRFSWVGERHSHT-VKCCLDRAFINSEGAFLFPFAELEFLEFTGSDHKP 585
>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1374
Score = 76.6 bits (187), Expect(5) = 6e-43
Identities = 40/106 (37%), Positives = 62/106 (58%), Gaps = 2/106 (1%)
Frame = +2
Query: 2150 FIEGRCITDNILFTRELFKGYTRKGISAK--CVLKVDLRKAYDTLDWYFLKRLMIELGFP 2323
F++GR I+DNIL EL + ++ +K D+ KAYD ++W FL++ M LGF
Sbjct: 540 FVKGRLISDNILIAHELLHALSSNNKCSEEFIAIKTDISKAYDRVEWPFLEKAMRGLGFA 599
Query: 2324 FKFLMWIMKCISTVTYSLILKGGLTKSFKGQRGIRQGDPMSLTYLF 2461
++ IM+C+ +V Y +++ G RG+RQGDP+S YLF
Sbjct: 600 DHWIRLIMECVKSVRYQVLINGTPHGEIIPSRGLRQGDPLS-PYLF 644
Score = 63.5 bits (153), Expect(5) = 6e-43
Identities = 31/93 (33%), Positives = 50/93 (53%)
Frame = +1
Query: 1780 VSRQQQLNLIRDVRPEEIMDAIKSMPKDKAPGVDGFPIEFFTKHWDEVKDDVIATVLSFF 1959
VS Q NL+ + EE+ A S+ K PG DG + + W+ + D + V +FF
Sbjct: 416 VSDQMNNNLLAPITKEEVQRATFSINPHKCPGPDGMNGFLYQQFWETMGDQITEMVQAFF 475
Query: 1960 RTGKMNSAINCTTVTLIPKVPSPTQVKDYRPIA 2058
R+G + +N T + LIPK+ ++ D+RPI+
Sbjct: 476 RSGSIEEGMNKTNICLIPKILKAEKMTDFRPIS 508
Score = 46.6 bits (109), Expect(5) = 6e-43
Identities = 34/131 (25%), Positives = 54/131 (41%)
Frame = +2
Query: 1295 FEGIVQNFWRQDTRGMEMTRAWQXXXXXXXXXXXXNNYMASYQQKINQARQRLEIVQANI 1474
F+ ++ NFW Q + + S +I + + +L+ I
Sbjct: 252 FKDLLCNFWSQQSTKTNALMMEKIASCRREISKWKRVSKPSSAVRIQELQFKLDAATKQI 311
Query: 1475 PLQPLCQNLLDQEKEAILEVEKWSNVEEQVMRQKSRASWIHCGDSNTKYFYAQWKLRTST 1654
P + L +KE E N EEQ ++KSR W+ GD NTKYF+A K R +
Sbjct: 312 PFDR--RELARLKKELSQEY----NNEEQFWQEKSRIMWMRNGDRNTKYFHAATKNRRAQ 365
Query: 1655 NSVNSIYNSAG 1687
N + + + G
Sbjct: 366 NRIQKLIDEEG 376
Score = 43.5 bits (101), Expect(5) = 6e-43
Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 2/114 (1%)
Frame = +1
Query: 868 QRHQLWDKLTHR-LSSSD*MACVWRL**CAKSEDRIGAPIT-QAETQGFRTFIDNLQLTP 1041
+R +LW++LT LS S ++IG P ++ FR +++ L
Sbjct: 112 ERGELWERLTRLGLSRSGPWMLTGDFNELVDPSEKIGGPARKESSCLEFRQMLNSCGLWE 171
Query: 1042 LKSTGWQLAWCNKRDERTRVYSKID*AFCNYKWLLKFSHIEAHFLNPGVSDHSP 1203
+ +G+Q +W R++ V ++D N W+ F +A +L SDHSP
Sbjct: 172 VNHSGYQFSWYGNRNDEL-VQCRLDRTVANQAWMELFPQAKATYLQKICSDHSP 224
Score = 34.7 bits (78), Expect(5) = 6e-43
Identities = 14/36 (38%), Positives = 26/36 (72%)
Frame = +3
Query: 2055 SLLHHIYKIITKVLTSRLRTVISDLVGASQSALLKG 2162
SL + IYK+I K++ +RL+ ++ L+ +Q+A +KG
Sbjct: 508 SLCNVIYKVIGKLMANRLKKILPSLISETQAAFVKG 543
>emb|CCA65974.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1379
Score = 82.4 bits (202), Expect(4) = 7e-43
Identities = 44/112 (39%), Positives = 64/112 (57%), Gaps = 3/112 (2%)
Frame = +1
Query: 1732 IFTKLMGEGEVIKGVC---VSRQQQLNLIRDVRPEEIMDAIKSMPKDKAPGVDGFPIEFF 1902
IFT+ E ++G+ +S+ Q +LI+ EEI A+ S DKAPG DGF +F
Sbjct: 397 IFTEEFTERPTLEGLQFNQLSQNQADSLIQPFSDEEIDYAVNSCASDKAPGPDGFNFKFI 456
Query: 1903 TKHWDEVKDDVIATVLSFFRTGKMNSAINCTTVTLIPKVPSPTQVKDYRPIA 2058
W+ +K+DV V F+ T K+ N T +TLIPK+ +P KD+RPI+
Sbjct: 457 KNAWETIKEDVYTLVREFWATSKLPKGSNSTFITLIPKIDNPENFKDFRPIS 508
Score = 80.5 bits (197), Expect(4) = 7e-43
Identities = 37/99 (37%), Positives = 63/99 (63%)
Frame = +2
Query: 2150 FIEGRCITDNILFTRELFKGYTRKGISAKCVLKVDLRKAYDTLDWYFLKRLMIELGFPFK 2329
++EGR I D L E+ RK + A +LK+D KAYD++ W FL+ + ++ FP +
Sbjct: 540 YVEGRQILDGALVASEVIDLCKRKKMEA-ILLKLDFHKAYDSVSWSFLQWTLAQMKFPPQ 598
Query: 2330 FLMWIMKCISTVTYSLILKGGLTKSFKGQRGIRQGDPMS 2446
+ W+M C+++ + S+++ G ++ FK RG+RQGDP+S
Sbjct: 599 WCKWVMACVASASASILINGSPSRPFKLHRGLRQGDPLS 637
Score = 48.5 bits (114), Expect(4) = 7e-43
Identities = 36/171 (21%), Positives = 72/171 (42%)
Frame = +2
Query: 1238 RNLHPKPFRLYSTVLNHPEFEGIVQNFWRQDTRGMEMTRAWQXXXXXXXXXXXXNNYMAS 1417
+N PKPFR + L P IV W + T + + + ++ +
Sbjct: 232 QNWGPKPFRFQNCWLTDPHCLEIVNKTWLESTNMPMIDKLRRVKIRLKAWNRDEFGHIDT 291
Query: 1418 YQQKINQARQRLEIVQANIPLQPLCQNLLDQEKEAILEVEKWSNVEEQVMRQKSRASWIH 1597
+ + Q+ + + + L + +++ KEA ++ W +E Q SR W+
Sbjct: 292 NIKIMEDEIQKFDTISNE---RELDEQEIERRKEAQSDLWMWMKRKELYWAQNSRILWLK 348
Query: 1598 CGDSNTKYFYAQWKLRTSTNSVNSIYNSAGVKVTDPIQVENQFISFLLSLW 1750
GD NTK+F+ + N + SI G ++ P Q++ + ++F ++
Sbjct: 349 HGDRNTKFFHMVASNKKRRNFIASI-KVNGRRIEKPNQIKEEAVTFFKEIF 398
Score = 33.5 bits (75), Expect(4) = 7e-43
Identities = 19/81 (23%), Positives = 34/81 (41%)
Frame = +1
Query: 961 EDRIGAPITQAETQGFRTFIDNLQLTPLKSTGWQLAWCNKRDERTRVYSKID*AFCNYKW 1140
+DR + T F+ F+ ++L + + W R + S +D N +W
Sbjct: 149 DDRGSLLFSNIGTDNFKNFLQVMELLEVSPSNKGFTWFRGRSK-----SVLDRLLLNPEW 203
Query: 1141 LLKFSHIEAHFLNPGVSDHSP 1203
+ +F + L G+SDH P
Sbjct: 204 INEFPSMRLSLLQRGLSDHCP 224
>emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabidopsis thaliana]
gi|7267666|emb|CAB78094.1| RNA-directed DNA
polymerase-like protein [Arabidopsis thaliana]
Length = 1274
Score = 92.4 bits (228), Expect(3) = 3e-42
Identities = 44/106 (41%), Positives = 64/106 (60%), Gaps = 2/106 (1%)
Frame = +2
Query: 2150 FIEGRCITDNILFTRELFKGYTRKGISAKC--VLKVDLRKAYDTLDWYFLKRLMIELGFP 2323
F+ GR I DN+L T E+ G C +K D+ KAYD + W FL+ +++ LGF
Sbjct: 481 FVPGRAIADNVLITHEILHFLRVSGAKKYCSMAIKTDMSKAYDRIKWNFLQEVLMRLGFH 540
Query: 2324 FKFLMWIMKCISTVTYSLILKGGLTKSFKGQRGIRQGDPMSLTYLF 2461
K++ W+M+C+ TV+YS ++ G S RG+RQGDP+S YLF
Sbjct: 541 DKWIRWVMQCVCTVSYSFLINGSPQGSVVPSRGLRQGDPLS-PYLF 585
Score = 75.9 bits (185), Expect(3) = 3e-42
Identities = 37/77 (48%), Positives = 50/77 (64%)
Frame = +1
Query: 1828 EIMDAIKSMPKDKAPGVDGFPIEFFTKHWDEVKDDVIATVLSFFRTGKMNSAINCTTVTL 2007
EI +A+ S+ DKAPG DGF FF +WD ++ DV + SFF ++ +N T VTL
Sbjct: 373 EIKEALFSISADKAPGPDGFSASFFHAYWDIIEADVSRDIRSFFVDSCLSPRLNETHVTL 432
Query: 2008 IPKVPSPTQVKDYRPIA 2058
IPK+ +P +V DYRPIA
Sbjct: 433 IPKISAPRKVSDYRPIA 449
Score = 54.3 bits (129), Expect(3) = 3e-42
Identities = 71/301 (23%), Positives = 119/301 (39%), Gaps = 5/301 (1%)
Frame = +2
Query: 863 DNRGTSCGINSHIGSQVQTEWLVCGDFNNVLNQKIELGPQLLKQKLKASGXXXXXXXXXX 1042
DNR S +G+Q + WL+ GDFN++L+ + G L + +
Sbjct: 55 DNRSVFWDKISSLGAQRSSAWLLTGDFNDILDNSEKQGGPLRWEGFFLAFRSFVSQNGLW 114
Query: 1043 XXXXXXXXXGVIRETKELEFI-ARLTEHFAIISGY*NLVTLKLTFSTLECQTIPPILIKC 1219
R T+ FI +RL S K + E P++
Sbjct: 115 DINHTGNSLSW-RGTRYSHFIKSRLDRALGNCSWSELFPMSKCEYLRFEGSDHRPLVTYF 173
Query: 1220 DPGAQPRNLHPKPFRLYSTVLNHPEFEGIVQNFW---RQDTRGMEMTRAWQXXXXXXXXX 1390
GA P KPFR + E +V+ W RQD+ +++R Q
Sbjct: 174 --GAPPLK-RSKPFRFDRRLREKEEIRALVKEVWELARQDSVLYKISRCRQSIIKWT--- 227
Query: 1391 XXXNNYMASYQQKINQARQRLE-IVQANIPLQPLCQNLLDQEKEAILEVEKWSNVEEQVM 1567
++ + I +A+Q LE + A+IP P + QE EA E E
Sbjct: 228 ---KEQNSNSAKAIKKAQQALESALSADIP-DPSLIGSITQELEAAYRQE------ELFW 277
Query: 1568 RQKSRASWIHCGDSNTKYFYAQWKLRTSTNSVNSIYNSAGVKVTDPIQVENQFISFLLSL 1747
+Q SR W++ GD N YF+A + R N+++ I + +G + + Q+ + S+ ++
Sbjct: 278 KQWSRVQWLNSGDRNKGYFHATTRTRRMLNNLSVIEDGSGQEFHEEEQIASTISSYFQNI 337
Query: 1748 W 1750
+
Sbjct: 338 F 338
>emb|CCA66180.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1383
Score = 81.6 bits (200), Expect(4) = 3e-42
Identities = 37/99 (37%), Positives = 62/99 (62%)
Frame = +2
Query: 2150 FIEGRCITDNILFTRELFKGYTRKGISAKCVLKVDLRKAYDTLDWYFLKRLMIELGFPFK 2329
+++GR I D L E+ + ++ I A +LK+D KAYD++ W FL+ + ++ FP K
Sbjct: 541 YVKGRQILDGALVASEIIESCKKRNIEA-ILLKLDFHKAYDSVSWNFLQWTLDQMNFPVK 599
Query: 2330 FLMWIMKCISTVTYSLILKGGLTKSFKGQRGIRQGDPMS 2446
+ WI C+++ + S+++ G T FK RG+RQGDP+S
Sbjct: 600 WCEWIKTCVTSASASILVNGSPTPPFKLHRGLRQGDPLS 638
Score = 78.2 bits (191), Expect(4) = 3e-42
Identities = 38/93 (40%), Positives = 53/93 (56%)
Frame = +1
Query: 1780 VSRQQQLNLIRDVRPEEIMDAIKSMPKDKAPGVDGFPIEFFTKHWDEVKDDVIATVLSFF 1959
+S+ Q +LI EEI A+ S DKAPG DGF +F WD +K D+ V F+
Sbjct: 417 LSQNQANSLITPFTTEEIDTAVSSCASDKAPGPDGFNFKFVKSAWDIIKTDIYGIVNDFW 476
Query: 1960 RTGKMNSAINCTTVTLIPKVPSPTQVKDYRPIA 2058
TG + N + LIPK+ +P+ +KDYRPI+
Sbjct: 477 ETGCLPQGCNTAYIALIPKIDNPSSLKDYRPIS 509
Score = 52.4 bits (124), Expect(4) = 3e-42
Identities = 38/168 (22%), Positives = 70/168 (41%)
Frame = +2
Query: 1250 PKPFRLYSTVLNHPEFEGIVQNFWRQDTRGMEMTRAWQXXXXXXXXXXXXNNYMASYQQK 1429
PKPFR + L P+ IV+ W + + + + N S
Sbjct: 237 PKPFRFNNCWLTDPKCMKIVEASWSSSPKISVVEKLKETKKRLKEWNL---NEFGSIDAN 293
Query: 1430 INQARQRLEIVQANIPLQPLCQNLLDQEKEAILEVEKWSNVEEQVMRQKSRASWIHCGDS 1609
I + + + L + L++ +EA ++ KW +E Q+SR +W+ GD
Sbjct: 294 IRKLEDCIANFDKEADERELDKEELEKRREAQADLWKWMKRKEIYWAQRSRITWLKAGDK 353
Query: 1610 NTKYFYAQWKLRTSTNSVNSIYNSAGVKVTDPIQVENQFISFLLSLWE 1753
NTK+F+A + N + I + G DP Q++ + +F +++
Sbjct: 354 NTKFFHAIASNKKRKNMMACI-ETDGQSTNDPSQIKKEARAFFKKIFK 400
Score = 30.4 bits (67), Expect(4) = 3e-42
Identities = 17/66 (25%), Positives = 30/66 (45%)
Frame = +1
Query: 1006 FRTFIDNLQLTPLKSTGWQLAWCNKRDERTRVYSKID*AFCNYKWLLKFSHIEAHFLNPG 1185
F++F+ L+L + S+ W R S +D + +W+ +I+ L G
Sbjct: 165 FKSFVQELKLLEIPSSSRAYTWY-----RANSKSLLDRLLVSPEWVSHCPNIKVSILQRG 219
Query: 1186 VSDHSP 1203
+SDH P
Sbjct: 220 LSDHCP 225
>emb|CCA66178.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1381
Score = 86.3 bits (212), Expect(4) = 3e-42
Identities = 39/99 (39%), Positives = 64/99 (64%)
Frame = +2
Query: 2150 FIEGRCITDNILFTRELFKGYTRKGISAKCVLKVDLRKAYDTLDWYFLKRLMIELGFPFK 2329
+IEGR I D L E+ + G+ A + K+D KAYD++ W FLK +++++ FP +
Sbjct: 540 YIEGRQILDGALVAGEVIDSCKKSGVEA-ILFKLDFHKAYDSVSWSFLKWILMQMRFPEQ 598
Query: 2330 FLMWIMKCISTVTYSLILKGGLTKSFKGQRGIRQGDPMS 2446
+ WIM C++T + S+++ G + FK +RG+RQGDP+S
Sbjct: 599 WCQWIMTCVTTASASILVNGSPSTPFKLKRGLRQGDPLS 637
Score = 71.2 bits (173), Expect(4) = 3e-42
Identities = 34/94 (36%), Positives = 50/94 (53%)
Frame = +1
Query: 1777 CVSRQQQLNLIRDVRPEEIMDAIKSMPKDKAPGVDGFPIEFFTKHWDEVKDDVIATVLSF 1956
CV+ +Q L EEI +A+ + DKAPG DGF +F W +K D+ V F
Sbjct: 415 CVTHEQAEQLTLPFSCEEIDEAVSTCSSDKAPGPDGFNFKFIKSAWGIIKHDIYEMVHKF 474
Query: 1957 FRTGKMNSAINCTTVTLIPKVPSPTQVKDYRPIA 2058
+ + ++ N + LIPK+ +P KDYRPI+
Sbjct: 475 WESSRLPQGSNVAYIALIPKMSNPKNFKDYRPIS 508
Score = 55.5 bits (132), Expect(4) = 3e-42
Identities = 39/168 (23%), Positives = 74/168 (44%)
Frame = +2
Query: 1250 PKPFRLYSTVLNHPEFEGIVQNFWRQDTRGMEMTRAWQXXXXXXXXXXXXNNYMASYQQK 1429
PKPFR + L+ PE IV+ W QD + + + K
Sbjct: 236 PKPFRFQNCWLSDPECLKIVKAVW-QDAEALHTIGKLKEVKKRLKSWNLTE--FGNIDSK 292
Query: 1430 INQARQRLEIVQANIPLQPLCQNLLDQEKEAILEVEKWSNVEEQVMRQKSRASWIHCGDS 1609
I + ++ + + + L L+ KEA +E+ KW E Q SR +W+ GD
Sbjct: 293 IKKFESEIQHLDSINNTRDLDTQELENRKEAQVELWKWIKRREMYWAQNSRVTWLKEGDR 352
Query: 1610 NTKYFYAQWKLRTSTNSVNSIYNSAGVKVTDPIQVENQFISFLLSLWE 1753
NT +F+A + NS+ ++ G+K+ +P +++ + ++ +++
Sbjct: 353 NTMFFHAIASNKRRKNSITTV-EVDGLKIDEPSRIKWEATTYFKKIFK 399
Score = 29.6 bits (65), Expect(4) = 3e-42
Identities = 17/73 (23%), Positives = 29/73 (39%)
Frame = +1
Query: 985 TQAETQGFRTFIDNLQLTPLKSTGWQLAWCNKRDERTRVYSKID*AFCNYKWLLKFSHIE 1164
+Q + F+ F+ + L + W R S +D F N +W+ ++
Sbjct: 157 SQTGSTNFKDFVQDSHLLEIPPACGGFTWF-----RGNSRSILDRLFVNPEWITNLPNLR 211
Query: 1165 AHFLNPGVSDHSP 1203
L G+SDH P
Sbjct: 212 VSLLQRGLSDHCP 224
>emb|CCA66188.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1381
Score = 81.6 bits (200), Expect(4) = 3e-41
Identities = 41/99 (41%), Positives = 59/99 (59%)
Frame = +2
Query: 2150 FIEGRCITDNILFTRELFKGYTRKGISAKCVLKVDLRKAYDTLDWYFLKRLMIELGFPFK 2329
FI GR I D L EL RK + +LK+D KA+D++ W FL + ++GFP +
Sbjct: 540 FIAGRQILDGALIAGELIDTCRRKKVQLS-ILKLDFHKAFDSVAWSFLDWTLDKMGFPPR 598
Query: 2330 FLMWIMKCISTVTYSLILKGGLTKSFKGQRGIRQGDPMS 2446
+ MWI CI++ S+++ G T FK RG+RQGDP+S
Sbjct: 599 WRMWISSCITSAAASILINGSPTAPFKLHRGLRQGDPLS 637
Score = 69.3 bits (168), Expect(4) = 3e-41
Identities = 46/184 (25%), Positives = 84/184 (45%)
Frame = +2
Query: 1202 PILIKCDPGAQPRNLHPKPFRLYSTVLNHPEFEGIVQNFWRQDTRGMEMTRAWQXXXXXX 1381
P+L+K D N P+PFR + L+HP I+++ W T G + +
Sbjct: 224 PLLVKSDE----LNWGPRPFRFQNCWLSHPGCLQIIKDVWASHTSGNLTDKLKETKKRLK 279
Query: 1382 XXXXXXNNYMASYQQKINQARQRLEIVQANIPLQPLCQNLLDQEKEAILEVEKWSNVEEQ 1561
++ +++ L+++ LQ L + + + +E+ W +E
Sbjct: 280 IWNSSEFGHIDRNIEELEDRIHNLDLISNGRDLQ---LEELAERRSSQMELWVWLRRKEA 336
Query: 1562 VMRQKSRASWIHCGDSNTKYFYAQWKLRTSTNSVNSIYNSAGVKVTDPIQVENQFISFLL 1741
Q SRA WI GD NTKYF+ R N++ ++ + GV V+DP + ++ +SF
Sbjct: 337 FWAQNSRAKWIKEGDKNTKYFHTLASTRKKKNTIPALITNNGV-VSDPAGIHHEAVSFFK 395
Query: 1742 SLWE 1753
S+++
Sbjct: 396 SIFK 399
Score = 57.4 bits (137), Expect(4) = 3e-41
Identities = 30/93 (32%), Positives = 47/93 (50%)
Frame = +1
Query: 1780 VSRQQQLNLIRDVRPEEIMDAIKSMPKDKAPGVDGFPIEFFTKHWDEVKDDVIATVLSFF 1959
+S +Q L +E+ +A++S KAPG DG+ F WD +K DV V +F+
Sbjct: 416 LSCEQVSQLTEPFSHKEVDEAVESCDPQKAPGPDGYNFRFIKDSWDIIKLDVYNIVENFW 475
Query: 1960 RTGKMNSAINCTTVTLIPKVPSPTQVKDYRPIA 2058
+G + N + LI K P + D+RPI+
Sbjct: 476 NSGSLPKGSNVAFIALIAKREVPEGLNDFRPIS 508
Score = 31.2 bits (69), Expect(4) = 3e-41
Identities = 19/80 (23%), Positives = 33/80 (41%)
Frame = +1
Query: 964 DRIGAPITQAETQGFRTFIDNLQLTPLKSTGWQLAWCNKRDERTRVYSKID*AFCNYKWL 1143
DR +Q F+ FI L + ++ W + + + SK+D N +W+
Sbjct: 150 DRGSGISSQLGVLDFKNFIQQTHLMEISASDGWFTWFSGQAK-----SKLDRLLVNPEWV 204
Query: 1144 LKFSHIEAHFLNPGVSDHSP 1203
F ++ L +SDH P
Sbjct: 205 SLFPSLQVSILRRNLSDHCP 224
>gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
[Medicago truncatula]
Length = 1296
Score = 74.7 bits (182), Expect(4) = 3e-41
Identities = 40/105 (38%), Positives = 57/105 (54%), Gaps = 1/105 (0%)
Frame = +2
Query: 2150 FIEGRCITDNILFTRELFKGYTR-KGISAKCVLKVDLRKAYDTLDWYFLKRLMIELGFPF 2326
F+ GR DN + +E+ R K K+DL KA+D ++W FL +++ GFP
Sbjct: 543 FLPGRGTADNSIILQEILHFMKRSKRKKGYVAFKLDLEKAFDNVNWDFLNSCLLDFGFPD 602
Query: 2327 KFLMWIMKCISTVTYSLILKGGLTKSFKGQRGIRQGDPMSLTYLF 2461
+ IM C+S+ YSL+ G FK G+RQGDP+S YLF
Sbjct: 603 IIVKLIMHCVSSANYSLLWNGNKMPPFKPTHGLRQGDPLS-PYLF 646
Score = 74.3 bits (181), Expect(4) = 3e-41
Identities = 38/86 (44%), Positives = 51/86 (59%)
Frame = +1
Query: 1801 NLIRDVRPEEIMDAIKSMPKDKAPGVDGFPIEFFTKHWDEVKDDVIATVLSFFRTGKMNS 1980
+L + +E+ A+ SM KAPG DGF FF ++W V DDV V S F TG +
Sbjct: 426 SLTSPITKKEVFAALNSMKPYKAPGPDGFHCIFFKQYWHIVGDDVFHLVRSAFLTGHFDP 485
Query: 1981 AINCTTVTLIPKVPSPTQVKDYRPIA 2058
AI+ T + LIPK+ SP KD+RPI+
Sbjct: 486 AISNTLIALIPKIDSPNTYKDFRPIS 511
Score = 55.1 bits (131), Expect(4) = 3e-41
Identities = 40/178 (22%), Positives = 78/178 (43%)
Frame = +2
Query: 1202 PILIKCDPGAQPRNLHPKPFRLYSTVLNHPEFEGIVQNFWRQDTRGMEMTRAWQXXXXXX 1381
P+L++ G P P+PFR + ++H ++ +V+ W T +
Sbjct: 225 PLLLRF--GGLPLTRGPRPFRFEAAWIDHYDYGNVVKRSWSTHTHNPTAS----LIKVME 278
Query: 1382 XXXXXXNNYMASYQQKINQARQRLEIVQANIPLQPLCQNLLDQEKEAILEVEKWSNVEEQ 1561
++ + Q+ ++ RL+ VQ+ + ++ L EKE E EE
Sbjct: 279 NSIIFNHDVFGNIFQRKSRVEWRLKGVQSYLERVDSYRHTL-LEKELQDEYNHILFQEEM 337
Query: 1562 VMRQKSRASWIHCGDSNTKYFYAQWKLRTSTNSVNSIYNSAGVKVTDPIQVENQFISF 1735
+ QKSR W+ GD NT +F+AQ +R N ++ + G+ +D ++ + + +
Sbjct: 338 LWYQKSREQWVKLGDKNTAFFHAQTVIRRKWNKIHKLQLPNGISTSDSNILQEEALKY 395
Score = 35.4 bits (80), Expect(4) = 3e-41
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +1
Query: 1006 FRTFIDNLQLTPLKSTGWQLAWCNKRDERTRVYS-KID*AFCNYKWLLKFSHIEAHFLNP 1182
F F++N L L +TG + W +K + R+ S K+D N W L F L
Sbjct: 160 FSNFMNNCNLLDLTTTGGRFTW-HKNNNGIRILSKKLDRGMANVDWRLSFPEAFVEVLCR 218
Query: 1183 GVSDHSP 1203
SDH+P
Sbjct: 219 LHSDHNP 225