BLASTX nr result

ID: Atropa21_contig00030089 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atropa21_contig00030089
         (534 letters)

Database: nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006350337.1| PREDICTED: transcription factor TCP8-like [S...    99   6e-19
ref|NP_001233806.1| TCP transcription factor 12 [Solanum lycoper...    84   2e-14

>ref|XP_006350337.1| PREDICTED: transcription factor TCP8-like [Solanum tuberosum]
          Length = 389

 Score = 99.0 bits (245), Expect = 6e-19
 Identities = 52/72 (72%), Positives = 57/72 (79%), Gaps = 6/72 (8%)
 Frame = +2

Query: 335 MEFMEPHRKKQGGASTSSGTDHH----HHQETPSSLQLVSPHQSQPDLS--NHPHPHGPF 496
           MEFMEPHRKKQGG++  S T+HH    H+QE PSSLQL+SPHQSQPD S     HPHGPF
Sbjct: 1   MEFMEPHRKKQGGST--SATNHHQHHQHNQEAPSSLQLISPHQSQPDPSTPGSNHPHGPF 58

Query: 497 MGSISMQSRTLI 532
           MGSISMQS TLI
Sbjct: 59  MGSISMQSTTLI 70


>ref|NP_001233806.1| TCP transcription factor 12 [Solanum lycopersicum]
           gi|306416835|gb|ADM87261.1| TCP transcription factor 12
           [Solanum lycopersicum]
          Length = 374

 Score = 84.3 bits (207), Expect = 2e-14
 Identities = 45/66 (68%), Positives = 48/66 (72%), Gaps = 4/66 (6%)
 Frame = +2

Query: 335 MEFMEPHRKKQGGASTSSGTDHHHH--QETPSSLQLVSPHQSQ--PDLSNHPHPHGPFMG 502
           MEFMEPHRKK G AS     +HH H  +ETPSSLQL+SPHQSQ  P      HPHGPFMG
Sbjct: 1   MEFMEPHRKKLGDAS-----NHHQHNQEETPSSLQLISPHQSQRDPSTPGSNHPHGPFMG 55

Query: 503 SISMQS 520
           SISMQS
Sbjct: 56  SISMQS 61


Top