BLASTX nr result

ID: Atropa21_contig00028844 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atropa21_contig00028844
         (675 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006363897.1| PREDICTED: sister chromatid cohesion protein...   362   6e-98
ref|XP_006363896.1| PREDICTED: sister chromatid cohesion protein...   362   6e-98
ref|XP_004242292.1| PREDICTED: sister chromatid cohesion protein...   313   4e-83
ref|XP_002284482.2| PREDICTED: sister chromatid cohesion protein...    62   1e-07
emb|CBI19025.3| unnamed protein product [Vitis vinifera]               62   1e-07

>ref|XP_006363897.1| PREDICTED: sister chromatid cohesion protein PDS5 homolog A-like
            isoform X2 [Solanum tuberosum]
          Length = 1447

 Score =  362 bits (929), Expect = 6e-98
 Identities = 188/253 (74%), Positives = 200/253 (79%), Gaps = 29/253 (11%)
 Frame = +2

Query: 2    TKYQKCQDGMTRPGNSGGSKLEMQFCKKGPLLLSMVKENRGYSYSDKEEISEANQELTTR 181
            T+YQK QDGM R GNSGGS LEMQ CKKGPL LSM+K+N GYSYSDK+EISEANQELTTR
Sbjct: 1145 TQYQKSQDGMKRSGNSGGSTLEMQLCKKGPLPLSMLKKNCGYSYSDKKEISEANQELTTR 1204

Query: 182  QRQKTSKPFSASASFELHKEFSIDDEDEDDAHGTTEVVIRTEQQPDCSRTLRSRPLSDQK 361
            +RQKTSKPFSAS SFELHKEFS+DDE EDDAHGT E  IRTE QP CSRTLR RPLSDQK
Sbjct: 1205 ERQKTSKPFSASVSFELHKEFSMDDEHEDDAHGTIEADIRTELQPYCSRTLRLRPLSDQK 1264

Query: 362  DENPRSLKEKDTISRCKTIMCETSKSTKDNSSDICISKGSKNNDEKLIRQHKELCSPEDK 541
            +ENPRSLKE DTISRCKTIM E SKS K NSSDICISKGSKN+ EKLIR HKELC+PEDK
Sbjct: 1265 NENPRSLKENDTISRCKTIMREPSKSVKGNSSDICISKGSKNDAEKLIRHHKELCTPEDK 1324

Query: 542  CCSGSTEAFDSSNSSLK-----------------------------DSCGLQSLCRPKKN 634
            C SGSTE FDSSN+SLK                             DSCGLQSLCRP+KN
Sbjct: 1325 CYSGSTEVFDSSNNSLKITCDSREAEVLSLDSEIWGTLSNHSLLDQDSCGLQSLCRPRKN 1384

Query: 635  IDMVGSVSQQEDD 673
            IDM+GSVSQQEDD
Sbjct: 1385 IDMIGSVSQQEDD 1397


>ref|XP_006363896.1| PREDICTED: sister chromatid cohesion protein PDS5 homolog A-like
            isoform X1 [Solanum tuberosum]
          Length = 1448

 Score =  362 bits (929), Expect = 6e-98
 Identities = 188/253 (74%), Positives = 200/253 (79%), Gaps = 29/253 (11%)
 Frame = +2

Query: 2    TKYQKCQDGMTRPGNSGGSKLEMQFCKKGPLLLSMVKENRGYSYSDKEEISEANQELTTR 181
            T+YQK QDGM R GNSGGS LEMQ CKKGPL LSM+K+N GYSYSDK+EISEANQELTTR
Sbjct: 1146 TQYQKSQDGMKRSGNSGGSTLEMQLCKKGPLPLSMLKKNCGYSYSDKKEISEANQELTTR 1205

Query: 182  QRQKTSKPFSASASFELHKEFSIDDEDEDDAHGTTEVVIRTEQQPDCSRTLRSRPLSDQK 361
            +RQKTSKPFSAS SFELHKEFS+DDE EDDAHGT E  IRTE QP CSRTLR RPLSDQK
Sbjct: 1206 ERQKTSKPFSASVSFELHKEFSMDDEHEDDAHGTIEADIRTELQPYCSRTLRLRPLSDQK 1265

Query: 362  DENPRSLKEKDTISRCKTIMCETSKSTKDNSSDICISKGSKNNDEKLIRQHKELCSPEDK 541
            +ENPRSLKE DTISRCKTIM E SKS K NSSDICISKGSKN+ EKLIR HKELC+PEDK
Sbjct: 1266 NENPRSLKENDTISRCKTIMREPSKSVKGNSSDICISKGSKNDAEKLIRHHKELCTPEDK 1325

Query: 542  CCSGSTEAFDSSNSSLK-----------------------------DSCGLQSLCRPKKN 634
            C SGSTE FDSSN+SLK                             DSCGLQSLCRP+KN
Sbjct: 1326 CYSGSTEVFDSSNNSLKITCDSREAEVLSLDSEIWGTLSNHSLLDQDSCGLQSLCRPRKN 1385

Query: 635  IDMVGSVSQQEDD 673
            IDM+GSVSQQEDD
Sbjct: 1386 IDMIGSVSQQEDD 1398


>ref|XP_004242292.1| PREDICTED: sister chromatid cohesion protein PDS5 homolog A-like
            [Solanum lycopersicum]
          Length = 1520

 Score =  313 bits (801), Expect = 4e-83
 Identities = 159/197 (80%), Positives = 168/197 (85%)
 Frame = +2

Query: 2    TKYQKCQDGMTRPGNSGGSKLEMQFCKKGPLLLSMVKENRGYSYSDKEEISEANQELTTR 181
            T+YQK QDGM R GNSGGS LEMQ  KKGPL LSM+K+N GYSYSDKEEISEANQELTTR
Sbjct: 1145 TQYQKSQDGMKRSGNSGGSMLEMQLSKKGPLPLSMLKKNCGYSYSDKEEISEANQELTTR 1204

Query: 182  QRQKTSKPFSASASFELHKEFSIDDEDEDDAHGTTEVVIRTEQQPDCSRTLRSRPLSDQK 361
            +RQKTSKPFSAS SFELHKEFS+DDE EDDAHG  E  I TEQQP CSRTLR RP SDQK
Sbjct: 1205 ERQKTSKPFSASVSFELHKEFSMDDEHEDDAHGAIEADITTEQQPHCSRTLRLRPSSDQK 1264

Query: 362  DENPRSLKEKDTISRCKTIMCETSKSTKDNSSDICISKGSKNNDEKLIRQHKELCSPEDK 541
            +E  RSLKE DTISRCKTIM + SKS K NSSDICISKGSKN+ EKLI QHKELCSPEDK
Sbjct: 1265 NEKSRSLKENDTISRCKTIMRKPSKSVKGNSSDICISKGSKNDAEKLINQHKELCSPEDK 1324

Query: 542  CCSGSTEAFDSSNSSLK 592
            C SGSTE FDSSN+SLK
Sbjct: 1325 CYSGSTEVFDSSNNSLK 1341


>ref|XP_002284482.2| PREDICTED: sister chromatid cohesion protein PDS5 homolog A-like
            [Vitis vinifera]
          Length = 1305

 Score = 62.4 bits (150), Expect = 1e-07
 Identities = 52/179 (29%), Positives = 84/179 (46%), Gaps = 13/179 (7%)
 Frame = +2

Query: 164  QELTTRQRQKTSKPFSASASFELHKEFSIDDEDEDDAHGTTEVVIRTEQQPDCSRTLRSR 343
            QE++T  R+K     +A  S  LH E  I++  + D    +E  +   Q      +   R
Sbjct: 1108 QEISTGGRRKHPVSPTAHKSVGLHNECCINNGHKSDKGRKSEPSLGQGQLSSSCGSATMR 1167

Query: 344  PLSDQKDENPR-------SLKEKDTISRCKTIMCETSKSTKDNSSDICISKGSKNNDEKL 502
            PL++ +    +       SLK   T      I  + SKS++    D C S    NN E L
Sbjct: 1168 PLTESQISTKKMVLPHAASLKANGTAKESSNITTKPSKSSRSKRKDPCSSVEIINNSEVL 1227

Query: 503  IRQHKELCSPEDKC-CSGSTEAFDSSNSSLK---DSCGLQSLCRPKKNIDMV--GSVSQ 661
            I Q  +L SP DKC  S + + F+S N++ K   D+  +++LC   +N + +  GS+S+
Sbjct: 1228 IGQRIKLWSPVDKCFYSVTVDGFNSQNNTHKVVYDNGAIEALCLASENWETISDGSLSK 1286


>emb|CBI19025.3| unnamed protein product [Vitis vinifera]
          Length = 1450

 Score = 62.4 bits (150), Expect = 1e-07
 Identities = 52/179 (29%), Positives = 84/179 (46%), Gaps = 13/179 (7%)
 Frame = +2

Query: 164  QELTTRQRQKTSKPFSASASFELHKEFSIDDEDEDDAHGTTEVVIRTEQQPDCSRTLRSR 343
            QE++T  R+K     +A  S  LH E  I++  + D    +E  +   Q      +   R
Sbjct: 1176 QEISTGGRRKHPVSPTAHKSVGLHNECCINNGHKSDKGRKSEPSLGQGQLSSSCGSATMR 1235

Query: 344  PLSDQKDENPR-------SLKEKDTISRCKTIMCETSKSTKDNSSDICISKGSKNNDEKL 502
            PL++ +    +       SLK   T      I  + SKS++    D C S    NN E L
Sbjct: 1236 PLTESQISTKKMVLPHAASLKANGTAKESSNITTKPSKSSRSKRKDPCSSVEIINNSEVL 1295

Query: 503  IRQHKELCSPEDKC-CSGSTEAFDSSNSSLK---DSCGLQSLCRPKKNIDMV--GSVSQ 661
            I Q  +L SP DKC  S + + F+S N++ K   D+  +++LC   +N + +  GS+S+
Sbjct: 1296 IGQRIKLWSPVDKCFYSVTVDGFNSQNNTHKVVYDNGAIEALCLASENWETISDGSLSK 1354


Top