BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atropa21_contig00028508
         (2573 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ADN33807.1| ty1-copia retrotransposon protein [Cucumis melo s...   135   7e-29
ref|XP_006340877.1| PREDICTED: probable histone-lysine N-methylt...   134   2e-28
ref|XP_004247781.1| PREDICTED: probable histone-lysine N-methylt...   126   4e-26
emb|CAN66637.1| hypothetical protein VITISV_011340 [Vitis vinifera]   113   5e-22
gb|ABF95851.1| retrotransposon protein, putative, Ty1-copia subc...   112   1e-21
ref|XP_004301658.1| PREDICTED: uncharacterized protein LOC101293...   107   3e-20
emb|CAE04807.2| OSJNBb0022P19.2 [Oryza sativa Japonica Group]         103   3e-19
gb|AAM22635.1|AF434192_2 Gag and Pol [Zea mays]                       103   4e-19
ref|XP_006342680.1| PREDICTED: probable histone-lysine N-methylt...   103   5e-19
ref|XP_004253015.1| PREDICTED: probable histone-lysine N-methylt...   102   6e-19
ref|XP_002489303.1| hypothetical protein SORBIDRAFT_0010s005460 ...   102   1e-18
gb|ABA99813.1| retrotransposon protein, putative, Ty1-copia subc...   100   4e-18
gb|AAR13298.1| gag-pol polyprotein [Phaseolus vulgaris]               100   5e-18
gb|AAX96544.1| retrotransposon protein, putative, Ty1-copia sub-...    99   9e-18
emb|CAX68207.1| Copia-like retrotransposon [Helianthus annuus]         99   9e-18
gb|AAS07202.1| putative integrase [Oryza sativa Japonica Group] ...    99   9e-18
dbj|BAC65862.1| hypothetical polyprotein [Oryza sativa Japonica ...    99   1e-17
gb|AAK39592.1|AC025296_27 putative retrotransposon polyprotein [...    99   1e-17
gb|ABG66192.1| retrotransposon protein, putative, Ty1-copia subc...    99   1e-17
gb|ABB46939.2| retrotransposon protein, putative, Ty1-copia subc...    99   1e-17

>gb|ADN33807.1| ty1-copia retrotransposon protein [Cucumis melo subsp. melo]
          Length = 1038

 Score =  135 bits (341), Expect = 7e-29
 Identities = 76/171 (44%), Positives = 103/171 (60%), Gaps = 2/171 (1%)
 Frame = -2

Query: 2431 RVNIGS*TFDTVFIGYTQNSVAY*FMSLNDHSICESRDAEFF*HVFPLKIDVPSDMQNNV 2252
            +  +G  TFD +FI Y QNS AY FM LND +I ESRD EFF HVFPLK  + +   +N 
Sbjct: 706  KTTVGPKTFDCIFIEYAQNSAAYRFMCLNDKTINESRDVEFFEHVFPLKQSLYAPSLSNR 765

Query: 2251 FTSMSVNSH--VVPSFDVIAIEHENEHRMSERRIIETSFSPDFITTFLTENFDIDALNDE 2078
                 + S   V  + D   +  E E + S+R+  E SF PDF++TF+ E    D ++  
Sbjct: 766  MHDPEIVSETPVSETVDTPNLSCELEPKRSKRQRTEKSFGPDFLSTFIVER--RDEIDCN 823

Query: 2077 LVAIYLMEEDPKTYDEAMELIVAIF*KEAIKSELDSIVSNHTWDLYDMPKG 1925
               + L++EDPKTY EA+  + +   KEAIKSELDS+  NHTW+L D+P G
Sbjct: 824  FTNLLLIDEDPKTYQEALNSVDSSMWKEAIKSELDSLAMNHTWELVDLPIG 874


>ref|XP_006340877.1| PREDICTED: probable histone-lysine N-methyltransferase, H3 lysine-9
           specific SUVH9-like [Solanum tuberosum]
          Length = 696

 Score =  134 bits (338), Expect = 2e-28
 Identities = 78/132 (59%), Positives = 94/132 (71%), Gaps = 20/132 (15%)
 Frame = +3

Query: 3   YSEFNRT------------QHFRDVGVV--EHQDSRVEVVEDPDSHASVP-DNNDTQVSE 137
           YSE+NR             Q + DV VV  ++QDS  EV+EDPD+ A VP  NNDTQV+E
Sbjct: 104 YSEYNRISEMFKEAFTKKMQRYGDVEVVGNQNQDSADEVMEDPDARAIVPVSNNDTQVAE 163

Query: 138 IVIARKQYTQRSPELVRVTDLKPEGQSYHQDAVRKTRMLCDSLRIL-----ENNQHLGPH 302
           +V+AR++Y QRS ELVRVTDLK E Q Y +DAVRKTRML DSLRIL     + +QHLGP+
Sbjct: 164 VVVARRKYQQRSAELVRVTDLKVEDQLYFRDAVRKTRMLYDSLRILAMVEDDGSQHLGPY 223

Query: 303 RRRRGDLKACQI 338
           R+ RGDLKACQI
Sbjct: 224 RKPRGDLKACQI 235


>ref|XP_004247781.1| PREDICTED: probable histone-lysine N-methyltransferase, H3 lysine-9
           specific SUVH9-like isoform 1 [Solanum lycopersicum]
           gi|460404626|ref|XP_004247782.1| PREDICTED: probable
           histone-lysine N-methyltransferase, H3 lysine-9 specific
           SUVH9-like isoform 2 [Solanum lycopersicum]
          Length = 696

 Score =  126 bits (317), Expect = 4e-26
 Identities = 75/132 (56%), Positives = 92/132 (69%), Gaps = 20/132 (15%)
 Frame = +3

Query: 3   YSEFNRT------------QHFRDVGVV--EHQDSRVEVVEDPDSHASVP-DNNDTQVSE 137
           YSE+NR             Q + DV VV  ++QDS   V+ED D+ A VP  NNDTQV+E
Sbjct: 104 YSEYNRISEMFKEAFTEKMQRYGDVEVVGNQNQDSVDVVMEDADARAIVPVSNNDTQVAE 163

Query: 138 IVIARKQYTQRSPELVRVTDLKPEGQSYHQDAVRKTRMLCDSLRIL-----ENNQHLGPH 302
           +V+AR++Y QRS ELVRVTDLK E Q Y ++AVRKTRML DSLRIL     + +QHLGP+
Sbjct: 164 VVVARRKYQQRSSELVRVTDLKVEDQLYFREAVRKTRMLYDSLRILAMVEDDGSQHLGPY 223

Query: 303 RRRRGDLKACQI 338
           R+ RGDLKACQI
Sbjct: 224 RKPRGDLKACQI 235


>emb|CAN66637.1| hypothetical protein VITISV_011340 [Vitis vinifera]
          Length = 1316

 Score =  113 bits (282), Expect = 5e-22
 Identities = 73/208 (35%), Positives = 102/208 (49%), Gaps = 7/208 (3%)
 Frame = -2

Query: 2431 RVNIGS*TFDTVFIGYTQNSVAY*FM-------SLNDHSICESRDAEFF*HVFPLKIDVP 2273
            +V IG  T D +FIGY  NS AY F+        ++ ++I ESR+A FF  VFP K    
Sbjct: 709  KVKIGPKTIDCIFIGYAHNSNAYRFLVYESNIPDIHKNTIMESRNASFFEDVFPCKSKEE 768

Query: 2272 SDMQNNVFTSMSVNSHVVPSFDVIAIEHENEHRMSERRIIETSFSPDFITTFLTENFDID 2093
                  +  S   N  V           E E R S+R   E SF PDF+T          
Sbjct: 769  PSSSKRMLESQDQNEEV-----------EVEPRRSKRVRTEKSFGPDFLT---------- 807

Query: 2092 ALNDELVAIYLMEEDPKTYDEAMELIVAIF*KEAIKSELDSIVSNHTWDLYDMPKGYXXX 1913
                     +++E +P+T+ EA+     +  KEAIKSE+DSI+ NHTW+L D+P G    
Sbjct: 808  ---------FMLEGEPQTFKEAVNSTEGLMWKEAIKSEIDSILQNHTWELVDLPPGCKPL 858

Query: 1912 XXXXXXXXKLRPDGTIDSSKARFLIRGF 1829
                    K++ DG+ID  KAR +I+G+
Sbjct: 859  SSKWIFKRKMKVDGSIDKYKARLVIKGY 886


>gb|ABF95851.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1075

 Score =  112 bits (279), Expect = 1e-21
 Identities = 72/205 (35%), Positives = 104/205 (50%), Gaps = 7/205 (3%)
 Frame = -2

Query: 2422 IGS*TFDTVFIGYTQNSVAY*FM-------SLNDHSICESRDAEFF*HVFPLKIDVPSDM 2264
            +G  T D VFIGY QNS+AY F+        + ++++ ESRD  FF   FPLK+  PS  
Sbjct: 578  LGPKTVDCVFIGYAQNSLAYRFLVVKSETTEVRENTVMESRDTTFFEDTFPLKVKSPSSE 637

Query: 2263 QNNVFTSMSVNSHVVPSFDVIAIEHENEHRMSERRIIETSFSPDFITTFLTENFDIDALN 2084
              +V   +S++S           +     R S+R   E +F  DFI              
Sbjct: 638  PISVEPRISISS-----------DDSLNLRRSKRSRTEKTFGDDFI-------------- 672

Query: 2083 DELVAIYLMEEDPKTYDEAMELIVAIF*KEAIKSELDSIVSNHTWDLYDMPKGYXXXXXX 1904
                 IYL+++ P T  EA     A + KEA++SE+DSI+SN TW++  +P+GY      
Sbjct: 673  -----IYLVDDVPSTLSEAFASAEAAYWKEAVQSEMDSILSNGTWEITHLPQGYRAIGYR 727

Query: 1903 XXXXXKLRPDGTIDSSKARFLIRGF 1829
                 KL+PDGTID  KAR + +G+
Sbjct: 728  AIGCKKLKPDGTIDKFKARLVAKGY 752


>ref|XP_004301658.1| PREDICTED: uncharacterized protein LOC101293311 [Fragaria vesca
            subsp. vesca]
          Length = 1096

 Score =  107 bits (267), Expect = 3e-20
 Identities = 72/208 (34%), Positives = 104/208 (50%), Gaps = 7/208 (3%)
 Frame = -2

Query: 2431 RVNIGS*TFDTVFIGYTQNSVAY*FMSLN-------DHSICESRDAEFF*HVFPLKIDVP 2273
            R  IG  T D VF+GY  +S A  F+ +N       +++I E RDA +F  +FP K  + 
Sbjct: 473  RKKIGPKTVDAVFLGYAHHSTANKFLVINSEIEEISNNTIKECRDATYFEDIFPFKSRIQ 532

Query: 2272 SDMQNNVFTSMSVNSHVVPSFDVIAIEHENEHRMSERRIIETSFSPDFITTFLTENFDID 2093
            +   N V ++ S ++    +  V   E   E R S+R   E +F  DF+           
Sbjct: 533  NQTVNRVISNASKDTASSSNPAVEETESLEEIRRSKRMRKEKNFGEDFV----------- 581

Query: 2092 ALNDELVAIYLMEEDPKTYDEAMELIVAIF*KEAIKSELDSIVSNHTWDLYDMPKGYXXX 1913
                    ++ +E DP TY EAM    A F KEAI SE++SI+ NHTW+L ++P G    
Sbjct: 582  --------VFHIEGDPATYKEAMASSDAPFWKEAINSEVESILQNHTWELTNLPPGTRPI 633

Query: 1912 XXXXXXXXKLRPDGTIDSSKARFLIRGF 1829
                    KL+PDG+ID  KAR + +GF
Sbjct: 634  GCKWVFRKKLKPDGSIDKYKARLVAKGF 661


>emb|CAE04807.2| OSJNBb0022P19.2 [Oryza sativa Japonica Group]
          Length = 1099

 Score =  103 bits (258), Expect = 3e-19
 Identities = 73/222 (32%), Positives = 107/222 (48%), Gaps = 20/222 (9%)
 Frame = -2

Query: 2422 IGS*TFDTVFIGYTQNSVAY*FMSLNDH-------SICESRDAEFF*HVFPLKIDVPSDM 2264
            +G  T D VFIGY  +SV Y F+ +N         +I ESRDA FF + FP+K    +  
Sbjct: 597  LGPNTVDCVFIGYAIHSVGYRFLIVNSRVLDMHVGTILESRDATFFENEFPMKHTPSTSS 656

Query: 2263 QNNVFTSMSVNSHVVPSFDVIAIEHENEH-------------RMSERRIIETSFSPDFIT 2123
            Q  V          +P  +   IEH ++              R S+R+ +  SF  D+I 
Sbjct: 657  QETV----------MPHENFAPIEHNDQTSEKNPEEDNIVDTRKSKRQRVAKSFGDDYI- 705

Query: 2122 TFLTENFDIDALNDELVAIYLMEEDPKTYDEAMELIVAIF*KEAIKSELDSIVSNHTWDL 1943
                              +YLM++ P+T +EA   + A + KEA++SE+DSI+SN TW++
Sbjct: 706  ------------------VYLMDDTPRTIEEAYSSLDANYWKEAVRSEMDSIISNGTWEV 747

Query: 1942 YDMPKGYXXXXXXXXXXXKLRPDGTIDSSKARFLIRGF*LKE 1817
             + P G            KLRPDGTI+  KAR + +G+  KE
Sbjct: 748  VERPYGCKSVGCKWVFKKKLRPDGTIEKYKARLVTKGYTQKE 789


>gb|AAM22635.1|AF434192_2 Gag and Pol [Zea mays]
          Length = 1264

 Score =  103 bits (257), Expect = 4e-19
 Identities = 75/216 (34%), Positives = 112/216 (51%), Gaps = 14/216 (6%)
 Frame = -2

Query: 2422 IGS*TFDTVFIGYTQNSVAY*FMSLNDH-------SICESRDAEFF*HVFPLKIDVPSDM 2264
            +G  T D VF+GY   S+AY F+ +          +I ESRDA FF H+FP+K D+ S  
Sbjct: 637  LGPRTVDCVFLGYASCSIAYRFLVVKSEVPDVYVDTIMESRDATFFEHIFPMK-DIHS-- 693

Query: 2263 QNNVFTSMSVNSHVVP--SFD----VIAIEHENEH-RMSERRIIETSFSPDFITTFLTEN 2105
             N+ ++S  +  H  P  SF+    ++  E +N+  + S+R+ +E SF  DFI       
Sbjct: 694  -NSRYSSEIIPEHNTPIESFEQPHEIVLEEDDNDAPKRSKRQRVEKSFGDDFI------- 745

Query: 2104 FDIDALNDELVAIYLMEEDPKTYDEAMELIVAIF*KEAIKSELDSIVSNHTWDLYDMPKG 1925
                        +YL+++ P T  EA     A   KEA+ +E+DSI+SN TW++ D P G
Sbjct: 746  ------------VYLVDDTPTTIAEAFASSDADDWKEAVHNEMDSILSNGTWEITDRPYG 793

Query: 1924 YXXXXXXXXXXXKLRPDGTIDSSKARFLIRGF*LKE 1817
                        KL+PDGTI+  KAR + +G+  KE
Sbjct: 794  CKPVGCKWVFKKKLKPDGTIEKYKARLVAKGYTQKE 829


>ref|XP_006342680.1| PREDICTED: probable histone-lysine N-methyltransferase, H3 lysine-9
           specific SUVH9-like [Solanum tuberosum]
          Length = 662

 Score =  103 bits (256), Expect = 5e-19
 Identities = 63/121 (52%), Positives = 77/121 (63%), Gaps = 9/121 (7%)
 Frame = +3

Query: 3   YSEFNRTQHFRDVGVVE--HQDSRVEVVEDPDSHASVPDNNDTQVSEIVIARKQYTQRSP 176
           +SE+NR          +   +D  VE  ED    A VP +N+ QVS+IVI R++Y +RS 
Sbjct: 82  HSEYNRISELFQTAFAQSLQRDGDVEANEDSGCRAIVPVSNE-QVSDIVITRRKYEKRSS 140

Query: 177 ELVRVTDLKPEGQSYHQDAVRKTRMLCDSLRIL-----ENNQHLGPHR--RRRGDLKACQ 335
           ELVRVTDLKPE + Y +D +RKTRML DSLRI      ENNQHLG  R  R RGDLKA Q
Sbjct: 141 ELVRVTDLKPEDERYFRDLIRKTRMLYDSLRIFVNLEDENNQHLGSGRQTRARGDLKASQ 200

Query: 336 I 338
           +
Sbjct: 201 M 201


>ref|XP_004253015.1| PREDICTED: probable histone-lysine N-methyltransferase, H3 lysine-9
           specific SUVH9-like [Solanum lycopersicum]
          Length = 665

 Score =  102 bits (255), Expect = 6e-19
 Identities = 62/121 (51%), Positives = 76/121 (62%), Gaps = 9/121 (7%)
 Frame = +3

Query: 3   YSEFNRTQHFRDVGVVE--HQDSRVEVVEDPDSHASVPDNNDTQVSEIVIARKQYTQRSP 176
           +SE+NR          +   +D  VE  ED    A VP +N +QVS+IVI R++Y +RS 
Sbjct: 84  HSEYNRISELFQTAFAQSVQRDGDVEANEDLGCRAIVPVSNGSQVSDIVITRRKYEKRSS 143

Query: 177 ELVRVTDLKPEGQSYHQDAVRKTRMLCDSLRIL-----ENNQHLGPHR--RRRGDLKACQ 335
           ELVRVTDLKPE   Y +D +RKTRML DSLRI      EN+QHLG  R  R RGDLKA Q
Sbjct: 144 ELVRVTDLKPEDVRYFRDLIRKTRMLYDSLRIFVNLEDENSQHLGSGRQTRARGDLKASQ 203

Query: 336 I 338
           +
Sbjct: 204 M 204


>ref|XP_002489303.1| hypothetical protein SORBIDRAFT_0010s005460 [Sorghum bicolor]
            gi|241946951|gb|EES20096.1| hypothetical protein
            SORBIDRAFT_0010s005460 [Sorghum bicolor]
          Length = 699

 Score =  102 bits (253), Expect = 1e-18
 Identities = 73/215 (33%), Positives = 108/215 (50%), Gaps = 13/215 (6%)
 Frame = -2

Query: 2422 IGS*TFDTVFIGYTQNSVAY*FMSLNDHS-------ICESRDAEFF*HVFPLKIDVPSDM 2264
            IG  T D VF+ Y  +SV Y F+ +N ++       + ESRDA FF + FP+KI  PS +
Sbjct: 68   IGPKTVDCVFLDYAIHSVGYRFLIINSNAPDMAVGTVMESRDATFFENEFPMKIGAPS-V 126

Query: 2263 QNNVFTSMSVNSHVVPSFDVIAIEHENEH------RMSERRIIETSFSPDFITTFLTENF 2102
             ++     S +S++    +   +E  +E       R S+R+ +  SF  DFI        
Sbjct: 127  SSHDSVPESHDSNIHADDNTHELEQNSEEADNTVTRRSKRQRVAKSFGEDFI-------- 178

Query: 2101 DIDALNDELVAIYLMEEDPKTYDEAMELIVAIF*KEAIKSELDSIVSNHTWDLYDMPKGY 1922
                       IYL+++ P T  EA     +   KEA++SE+DSI+SN TW++ D P G 
Sbjct: 179  -----------IYLVDDTPTTISEAYSSSDSDMWKEAVQSEMDSIMSNGTWEVVDRPFGC 227

Query: 1921 XXXXXXXXXXXKLRPDGTIDSSKARFLIRGF*LKE 1817
                       KLRPDGTI+  KAR + +G+  KE
Sbjct: 228  KPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKE 262


>gb|ABA99813.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1448

 Score =  100 bits (248), Expect = 4e-18
 Identities = 70/216 (32%), Positives = 105/216 (48%), Gaps = 14/216 (6%)
 Frame = -2

Query: 2422 IGS*TFDTVFIGYTQNSVAY*FMSLNDH-------SICESRDAEFF*HVFPLKIDVPSDM 2264
            +G  T D VF+GY  +SV Y F+ +N         +I ESRDA FF + FP+K    +  
Sbjct: 820  LGPKTVDCVFLGYAIHSVGYRFLIVNSGVPDMHAGTILESRDATFFENEFPMKYTPSTSS 879

Query: 2263 QNNVFTSMSVNSHVVPSFDVIAIEHEN-------EHRMSERRIIETSFSPDFITTFLTEN 2105
            +  V      + H  P         EN       + R S+R+ +  SF  D+I       
Sbjct: 880  KETVMP----HEHFAPIEHNDQTPEENPEEDNIVDTRKSKRQRVAKSFGDDYI------- 928

Query: 2104 FDIDALNDELVAIYLMEEDPKTYDEAMELIVAIF*KEAIKSELDSIVSNHTWDLYDMPKG 1925
                        +YL+++ P+T +EA   + A + KEA++SE+DSI+SN TW++ + P G
Sbjct: 929  ------------VYLVDDTPRTIEEAYSSLDADYWKEAVRSEMDSIMSNGTWEVVERPYG 976

Query: 1924 YXXXXXXXXXXXKLRPDGTIDSSKARFLIRGF*LKE 1817
                        KLRPDGTI+  KAR + +G+  KE
Sbjct: 977  CKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKE 1012


>gb|AAR13298.1| gag-pol polyprotein [Phaseolus vulgaris]
          Length = 1290

 Score = 99.8 bits (247), Expect = 5e-18
 Identities = 70/203 (34%), Positives = 99/203 (48%), Gaps = 5/203 (2%)
 Frame = -2

Query: 2422 IGS*TFDTVFIGYTQNSVAY*FMSLND-----HSICESRDAEFF*HVFPLKIDVPSDMQN 2258
            IGS T D +F+GY ++S AY F+ LN      ++I E+++AEFF H+FPLK    S+   
Sbjct: 674  IGSKTSDCMFLGYAEHSAAYRFLVLNSDIIERNTIVETKNAEFFEHIFPLKSSGTSEQP- 732

Query: 2257 NVFTSMSVNSHVVPSFDVIAIEHENEHRMSERRIIETSFSPDFITTFLTENFDIDALNDE 2078
                            D ++     + R S+R+  ETSF  DF T               
Sbjct: 733  ---------------IDSVSDTLSEDVRRSKRQRKETSFGNDFYT--------------- 762

Query: 2077 LVAIYLMEEDPKTYDEAMELIVAIF*KEAIKSELDSIVSNHTWDLYDMPKGYXXXXXXXX 1898
                YL+E DP ++ EA     A    +AIK+EL+SI  N+TW L D+PKG         
Sbjct: 763  ----YLVENDPISFVEATSAPDAKHWDKAIKTELESIKKNNTWTLVDLPKGAKPIGCKWI 818

Query: 1897 XXXKLRPDGTIDSSKARFLIRGF 1829
               K  PDG+I+  KAR + +GF
Sbjct: 819  FKKKYHPDGSIEKYKARLVAKGF 841


>gb|AAX96544.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77550433|gb|ABA93230.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 1321

 Score = 99.0 bits (245), Expect = 9e-18
 Identities = 73/222 (32%), Positives = 105/222 (47%), Gaps = 20/222 (9%)
 Frame = -2

Query: 2422 IGS*TFDTVFIGYTQNSVAY*FMSLNDH-------SICESRDAEFF*HVFPLKIDVPSDM 2264
            +G  T D VF+GY  +SV Y F+ +N         +I ESRDA FF + FP+K       
Sbjct: 710  LGPKTVDCVFLGYAIHSVGYRFLIVNSGVPDMHAGTIFESRDATFFDNEFPMKYT----- 764

Query: 2263 QNNVFTSMSVNSHVVPSFDVIAIEHENEH-------------RMSERRIIETSFSPDFIT 2123
                  S S    V+P      IEH +E              R S+R+ +  SF  D+I 
Sbjct: 765  -----PSTSSKETVMPHEHFAPIEHNDETPEENPEEDNIVDTRKSKRQRVAKSFGDDYI- 818

Query: 2122 TFLTENFDIDALNDELVAIYLMEEDPKTYDEAMELIVAIF*KEAIKSELDSIVSNHTWDL 1943
                              +YL+++ P+T +EA     A + KEA++SE+DSI+SN TW++
Sbjct: 819  ------------------VYLVDDTPRTIEEAYSSPDADYWKEAVRSEMDSIMSNGTWEV 860

Query: 1942 YDMPKGYXXXXXXXXXXXKLRPDGTIDSSKARFLIRGF*LKE 1817
             + P G            KLRPDGTI+  KAR + +G+  KE
Sbjct: 861  VERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKE 902


>emb|CAX68207.1| Copia-like retrotransposon [Helianthus annuus]
          Length = 1358

 Score = 99.0 bits (245), Expect = 9e-18
 Identities = 69/204 (33%), Positives = 101/204 (49%)
 Frame = -2

Query: 2428 VNIGS*TFDTVFIGYTQNSVAY*FMSLNDHSICESRDAEFF*HVFPLKIDVPSDMQNNVF 2249
            + +G   F +VFIGY  +S +Y  +      + ESRD EFF +    K     +  N   
Sbjct: 733  LKLGERAFKSVFIGYASHSKSYRLLDDESGIVVESRDVEFFEN----KFSRDDENSNGTT 788

Query: 2248 TSMSVNSHVVPSFDVIAIEHENEHRMSERRIIETSFSPDFITTFLTENFDIDALNDELVA 2069
            TS +    V PS  V       E R S R   E S+  DF + +L E      + + + A
Sbjct: 789  TSSTSEKRVQPSPIV------EEPRKSTRVRKEKSYGDDFFS-YLVEGTQKKVMREVIFA 841

Query: 2068 IYLMEEDPKTYDEAMELIVAIF*KEAIKSELDSIVSNHTWDLYDMPKGYXXXXXXXXXXX 1889
            + L ++DPKT++EAM    A   KEA+  E+DSI+ N TW+L D+PKG            
Sbjct: 842  VNL-DDDPKTFNEAMSSRDAPLWKEAVNDEMDSIMGNGTWELADLPKGKKPIGSKWIFKR 900

Query: 1888 KLRPDGTIDSSKARFLIRGF*LKE 1817
            K  PDG+I + KAR + +G+  +E
Sbjct: 901  KYHPDGSISAYKARLVAKGYRQRE 924


>gb|AAS07202.1| putative integrase [Oryza sativa Japonica Group]
            gi|108708916|gb|ABF96711.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1456

 Score = 99.0 bits (245), Expect = 9e-18
 Identities = 70/216 (32%), Positives = 105/216 (48%), Gaps = 14/216 (6%)
 Frame = -2

Query: 2422 IGS*TFDTVFIGYTQNSVAY*FMSLNDH-------SICESRDAEFF*HVFPLKIDVPSDM 2264
            +G  T D VF+GY  +SV Y F+ +N         +I ESRDA FF + FP+K    +  
Sbjct: 828  LGPKTVDCVFLGYAIHSVGYRFLIVNSGVPDMHAGTILESRDATFFENEFPMKYTPSTSS 887

Query: 2263 QNNVFTSMSVNSHVVPSFDVIAIEHEN-------EHRMSERRIIETSFSPDFITTFLTEN 2105
            +  V      + H  P      +  EN       + R S+R+ +  SF  D+I       
Sbjct: 888  KETVMP----HEHFAPIEHDDQMPEENPEEDNIVDTRKSKRQRVAKSFGDDYI------- 936

Query: 2104 FDIDALNDELVAIYLMEEDPKTYDEAMELIVAIF*KEAIKSELDSIVSNHTWDLYDMPKG 1925
                        +YL+++ P+T +EA     A + KEA++SE+DSI+SN TW++ + P G
Sbjct: 937  ------------VYLVDDTPRTIEEAYSSPDADYWKEAVRSEMDSIMSNGTWEVVERPYG 984

Query: 1924 YXXXXXXXXXXXKLRPDGTIDSSKARFLIRGF*LKE 1817
                        KLRPDGTI+  KAR + +G+  KE
Sbjct: 985  CKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKE 1020


>dbj|BAC65862.1| hypothetical polyprotein [Oryza sativa Japonica Group]
          Length = 1268

 Score = 98.6 bits (244), Expect = 1e-17
 Identities = 71/216 (32%), Positives = 104/216 (48%), Gaps = 14/216 (6%)
 Frame = -2

Query: 2422 IGS*TFDTVFIGYTQNSVAY*FMSLNDH-------SICESRDAEFF*HVFPLKIDVPSDM 2264
            +G  T D VF+GY  +SV Y F+ +N         +I ESRDA FF + FP+K    +  
Sbjct: 640  LGPKTVDCVFLGYAIHSVGYRFLIVNSGVPDMRVGTITESRDATFFENEFPMKNAPSTSS 699

Query: 2263 QNNVFTSMSVNSHVVPSFDVIAIEHENEH-------RMSERRIIETSFSPDFITTFLTEN 2105
            Q  + +      H VP   +     EN         R S+R+    SF  D+I       
Sbjct: 700  QEPILSP----EHFVPIEHIDQTLEENPEEDNIVATRKSKRQRTAKSFGDDYI------- 748

Query: 2104 FDIDALNDELVAIYLMEEDPKTYDEAMELIVAIF*KEAIKSELDSIVSNHTWDLYDMPKG 1925
                        +YL+++ P+T +EA     A + KEA++SE+DSI+SN TW++ + P G
Sbjct: 749  ------------VYLVDDTPRTIEEAYSSPDADYWKEAVRSEMDSIMSNGTWEVVERPYG 796

Query: 1924 YXXXXXXXXXXXKLRPDGTIDSSKARFLIRGF*LKE 1817
                        KLRPDGTI+  KAR + +G+  KE
Sbjct: 797  CKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKE 832


>gb|AAK39592.1|AC025296_27 putative retrotransposon polyprotein [Oryza sativa Japonica Group]
          Length = 804

 Score = 98.6 bits (244), Expect = 1e-17
 Identities = 72/222 (32%), Positives = 106/222 (47%), Gaps = 20/222 (9%)
 Frame = -2

Query: 2422 IGS*TFDTVFIGYTQNSVAY*FMSLNDH-------SICESRDAEFF*HVFPLKIDVPSDM 2264
            +G  T D VF+GY  +SV Y F+ +N         +I ESRDA FF + FP+K       
Sbjct: 176  LGPKTVDCVFLGYAIHSVGYRFLIVNSGVPDMHAGTILESRDATFFENEFPMKYT----- 230

Query: 2263 QNNVFTSMSVNSHVVPSFDVIAIEHENEH-------------RMSERRIIETSFSPDFIT 2123
                  S S    V+P      IEH+++              R S+R+ +  SF  D+I 
Sbjct: 231  -----PSTSSKETVMPHEHFAPIEHDDQTPEENPEEDNIVDTRKSKRQRVAKSFGDDYI- 284

Query: 2122 TFLTENFDIDALNDELVAIYLMEEDPKTYDEAMELIVAIF*KEAIKSELDSIVSNHTWDL 1943
                              +YL+++ P+T +EA     A + KEA++SE+DSI+SN TW++
Sbjct: 285  ------------------VYLVDDTPRTIEEAYSSPDADYWKEAVRSEMDSIMSNGTWEV 326

Query: 1942 YDMPKGYXXXXXXXXXXXKLRPDGTIDSSKARFLIRGF*LKE 1817
             + P G            KLRPDGTI+  KAR + +G+  KE
Sbjct: 327  VEHPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKE 368


>gb|ABG66192.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1457

 Score = 98.6 bits (244), Expect = 1e-17
 Identities = 72/222 (32%), Positives = 106/222 (47%), Gaps = 20/222 (9%)
 Frame = -2

Query: 2422 IGS*TFDTVFIGYTQNSVAY*FMSLNDH-------SICESRDAEFF*HVFPLKIDVPSDM 2264
            +G  T D VF+GY  +SV Y F+ +N         +I ESRDA FF + FP+K       
Sbjct: 829  LGPKTVDCVFLGYAIHSVGYRFLIVNSGVPDMHAGTILESRDATFFENEFPMKYT----- 883

Query: 2263 QNNVFTSMSVNSHVVPSFDVIAIEHENEH-------------RMSERRIIETSFSPDFIT 2123
                  S S    V+P      IEH+++              R S+R+ +  SF  D+I 
Sbjct: 884  -----PSTSSKETVMPHEHFAPIEHDDQTPEENPEEDNIVDTRKSKRQRVAKSFGDDYI- 937

Query: 2122 TFLTENFDIDALNDELVAIYLMEEDPKTYDEAMELIVAIF*KEAIKSELDSIVSNHTWDL 1943
                              +YL+++ P+T +EA     A + KEA++SE+DSI+SN TW++
Sbjct: 938  ------------------VYLVDDTPRTIEEAYSSPDADYWKEAVRSEMDSIMSNGTWEV 979

Query: 1942 YDMPKGYXXXXXXXXXXXKLRPDGTIDSSKARFLIRGF*LKE 1817
             + P G            KLRPDGTI+  KAR + +G+  KE
Sbjct: 980  VEHPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKE 1021


>gb|ABB46939.2| retrotransposon protein, putative, Ty1-copia subclass, expressed
            [Oryza sativa Japonica Group]
          Length = 1085

 Score = 98.6 bits (244), Expect = 1e-17
 Identities = 70/219 (31%), Positives = 106/219 (48%), Gaps = 14/219 (6%)
 Frame = -2

Query: 2431 RVNIGS*TFDTVFIGYTQNSVAY*FMSLNDH-------SICESRDAEFF*HVFPLKIDVP 2273
            +  +G  T D VF+GY  +SV Y F+ +N         +I ESRDA FF + FP+K  + 
Sbjct: 647  KCKLGQKTVDCVFLGYAIHSVGYRFLIVNSRVPNMRVGTITESRDATFFENEFPMKNALS 706

Query: 2272 SDMQNNVFTSMSVNSHVVPSFDVIAIEHENEH-------RMSERRIIETSFSPDFITTFL 2114
            +  Q  + +      H VP   +  +  EN         R S+R+    SF  D+I    
Sbjct: 707  TSSQEPILSP----EHFVPIEHIDQMLEENPEEDNIVATRKSKRQRTAKSFGDDYI---- 758

Query: 2113 TENFDIDALNDELVAIYLMEEDPKTYDEAMELIVAIF*KEAIKSELDSIVSNHTWDLYDM 1934
                           +YL+++ P+T +EA   + A + KEA+ SE+DSI+SN TW++ + 
Sbjct: 759  ---------------VYLVDDTPRTIEEAYSSLDADYWKEAVCSEMDSIMSNGTWEVAER 803

Query: 1933 PKGYXXXXXXXXXXXKLRPDGTIDSSKARFLIRGF*LKE 1817
            P G            KLR DGTI+  KAR + +G+  KE
Sbjct: 804  PYGCKPVGCKWVFKKKLRSDGTIEKYKARLVAKGYTQKE 842