BLASTX nr result
ID: Atropa21_contig00027943
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Atropa21_contig00027943
(551 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_063981.1| orf129a gene product (mitochondrion) [Beta vulg... 77 2e-12
ref|YP_004222309.1| hypothetical protein BevumaM_p074 [Beta vulg... 77 2e-12
emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulga... 74 2e-11
emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga... 70 3e-10
ref|XP_004253224.1| PREDICTED: uncharacterized protein LOC101268... 68 1e-09
ref|XP_004231502.1| PREDICTED: uncharacterized protein LOC101265... 67 2e-09
ref|XP_004247247.1| PREDICTED: uncharacterized protein LOC101256... 67 3e-09
gb|ABD33261.1| RNA-directed DNA polymerase (Reverse transcriptas... 63 2e-08
ref|XP_004240780.1| PREDICTED: uncharacterized protein LOC101257... 64 2e-08
ref|XP_006595311.1| PREDICTED: uncharacterized protein LOC102668... 62 9e-08
ref|XP_006598659.1| PREDICTED: uncharacterized protein LOC102659... 60 3e-07
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi... 59 1e-06
ref|XP_004295858.1| PREDICTED: uncharacterized protein LOC101314... 58 1e-06
gb|AAD24601.1| putative non-LTR retroelement reverse transcripta... 57 2e-06
gb|AAC62779.1| F11O4.2 [Arabidopsis thaliana] 56 7e-06
emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thal... 55 9e-06
>ref|NP_063981.1| orf129a gene product (mitochondrion) [Beta vulgaris subsp.
vulgaris] gi|9049283|dbj|BAA99293.1| orf129a [Beta
vulgaris subsp. vulgaris]
Length = 129
Score = 77.4 bits (189), Expect = 2e-12
Identities = 35/63 (55%), Positives = 48/63 (76%)
Frame = -1
Query: 203 RKGVSPRCMRKIDMQKAYDSIE*SFLN*VFIGLNVPNQMVSWIMNYVTSVTYSIMINGMP 24
+K VSPRCM K+D++KAYDSIE SFL + L P+Q ++WIM VT+V+YSI++NG P
Sbjct: 38 QKAVSPRCMIKVDLRKAYDSIEWSFLQCMLSELGFPSQFITWIMECVTTVSYSILLNGKP 97
Query: 23 SIP 15
+ P
Sbjct: 98 TTP 100
>ref|YP_004222309.1| hypothetical protein BevumaM_p074 [Beta vulgaris subsp. maritima]
gi|346683183|ref|YP_004842114.1| hypothetical protein
BemaM_p069 [Beta macrocarpa]
gi|319439824|emb|CBX33299.1| hypothetical protein [Beta
vulgaris subsp. maritima] gi|345500101|emb|CBX24919.1|
hypothetical protein [Beta macrocarpa]
Length = 238
Score = 77.4 bits (189), Expect = 2e-12
Identities = 35/63 (55%), Positives = 48/63 (76%)
Frame = -1
Query: 203 RKGVSPRCMRKIDMQKAYDSIE*SFLN*VFIGLNVPNQMVSWIMNYVTSVTYSIMINGMP 24
+K VSPRCM K+D++KAYDSIE SFL + L P+Q ++WIM VT+V+YSI++NG P
Sbjct: 38 QKAVSPRCMIKVDLRKAYDSIEWSFLQCMLSELGFPSQFITWIMECVTTVSYSILLNGKP 97
Query: 23 SIP 15
+ P
Sbjct: 98 TTP 100
>emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1110
Score = 73.9 bits (180), Expect = 2e-11
Identities = 42/114 (36%), Positives = 71/114 (62%), Gaps = 3/114 (2%)
Frame = -1
Query: 338 FQLDSILLASRF-GDHGLFVDKS*SNYVPRRLIQHHT*--S*TCKRLWRKGVSPRCMRKI 168
+++ S +L +R G G V+++ S ++P R I + S + RK +SPRC+ K+
Sbjct: 524 YKIISKMLTNRMKGIIGEVVNEAQSGFIPGRHIADNILLASELIRGYTRKHMSPRCIMKV 583
Query: 167 DMQKAYDSIE*SFLN*VFIGLNVPNQMVSWIMNYVTSVTYSIMINGMPSIPLFA 6
D++KAYDS+E SFL + P++ V WIM V++V+YS+++NG+P+ P A
Sbjct: 584 DIRKAYDSVEWSFLETLLYEFGFPSRFVGWIMECVSTVSYSVLVNGIPTQPFQA 637
>emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1114
Score = 70.5 bits (171), Expect = 3e-10
Identities = 33/66 (50%), Positives = 47/66 (71%)
Frame = -1
Query: 203 RKGVSPRCMRKIDMQKAYDSIE*SFLN*VFIGLNVPNQMVSWIMNYVTSVTYSIMINGMP 24
R+ VSPRC+ K+D++KAYDS+E FL + L P+ + WIM V +V+YSI++NG+P
Sbjct: 575 RRHVSPRCVIKVDIRKAYDSVEWVFLESMLKELGFPSMFIRWIMACVKTVSYSILLNGIP 634
Query: 23 SIPLFA 6
SIP A
Sbjct: 635 SIPFDA 640
>ref|XP_004253224.1| PREDICTED: uncharacterized protein LOC101268376 [Solanum
lycopersicum]
Length = 717
Score = 67.8 bits (164), Expect(2) = 1e-09
Identities = 32/62 (51%), Positives = 40/62 (64%)
Frame = -1
Query: 215 KRLWRKGVSPRCMRKIDMQKAYDSIE*SFLN*VFIGLNVPNQMVSWIMNYVTSVTYSIMI 36
K RK VSPRCM KID+ KAYDS+E FL V GL P+ W+M V +V Y+I++
Sbjct: 376 KAYTRKNVSPRCMLKIDLHKAYDSVEWPFLEQVMEGLGFPDLFTKWVMKCVKTVNYTIVV 435
Query: 35 NG 30
NG
Sbjct: 436 NG 437
Score = 20.4 bits (41), Expect(2) = 1e-09
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -2
Query: 241 NIIHSHELAKGY 206
NII +HEL K Y
Sbjct: 367 NIILAHELVKAY 378
>ref|XP_004231502.1| PREDICTED: uncharacterized protein LOC101265971 [Solanum
lycopersicum]
Length = 190
Score = 67.4 bits (163), Expect = 2e-09
Identities = 28/58 (48%), Positives = 41/58 (70%)
Frame = -1
Query: 203 RKGVSPRCMRKIDMQKAYDSIE*SFLN*VFIGLNVPNQMVSWIMNYVTSVTYSIMING 30
RK +SPR M KID+QK YDS+E +FL V +GL P + W+M+ V ++ Y+I++NG
Sbjct: 111 RKNISPRSMLKIDLQKTYDSVEWTFLEQVMVGLGFPEMFIQWVMHCVKTMNYTIVVNG 168
>ref|XP_004247247.1| PREDICTED: uncharacterized protein LOC101256917 [Solanum
lycopersicum]
Length = 421
Score = 67.0 bits (162), Expect = 3e-09
Identities = 29/58 (50%), Positives = 40/58 (68%)
Frame = -1
Query: 203 RKGVSPRCMRKIDMQKAYDSIE*SFLN*VFIGLNVPNQMVSWIMNYVTSVTYSIMING 30
RK +SPR M KID+QK YDS+E FL V +GL P+ W+M+ V +V Y+I++NG
Sbjct: 240 RKNISPRSMLKIDLQKVYDSVEWPFLKQVMVGLGFPDMFTQWVMHCVKTVNYTIVVNG 297
>gb|ABD33261.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
truncatula]
Length = 402
Score = 62.8 bits (151), Expect(2) = 2e-08
Identities = 29/66 (43%), Positives = 44/66 (66%)
Frame = -1
Query: 203 RKGVSPRCMRKIDMQKAYDSIE*SFLN*VFIGLNVPNQMVSWIMNYVTSVTYSIMINGMP 24
RKG+SPRCM KID+QKAY+S+E F+ + + L + V+W+M +T+ +Y+ ING
Sbjct: 255 RKGISPRCMVKIDLQKAYNSVEWPFIKHLMLELGFSYKFVNWVMGCLTTASYTFNINGDL 314
Query: 23 SIPLFA 6
+ P A
Sbjct: 315 TRPFAA 320
Score = 21.6 bits (44), Expect(2) = 2e-08
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = -2
Query: 241 NIIHSHELAKGY 206
NII SHEL K Y
Sbjct: 242 NIILSHELVKSY 253
>ref|XP_004240780.1| PREDICTED: uncharacterized protein LOC101257671 [Solanum
lycopersicum]
Length = 226
Score = 64.3 bits (155), Expect = 2e-08
Identities = 31/62 (50%), Positives = 40/62 (64%)
Frame = -1
Query: 215 KRLWRKGVSPRCMRKIDMQKAYDSIE*SFLN*VFIGLNVPNQMVSWIMNYVTSVTYSIMI 36
K RK +SPR M KID+QK+YDS+E +L V GL P V+WIM V +V YSI++
Sbjct: 124 KAYTRKHISPRSMLKIDLQKSYDSVEWDYLEQVMCGLGFPEMFVNWIMKCVNTVNYSIVV 183
Query: 35 NG 30
G
Sbjct: 184 IG 185
>ref|XP_006595311.1| PREDICTED: uncharacterized protein LOC102668530 [Glycine max]
Length = 477
Score = 62.0 bits (149), Expect = 9e-08
Identities = 26/58 (44%), Positives = 40/58 (68%)
Frame = -1
Query: 203 RKGVSPRCMRKIDMQKAYDSIE*SFLN*VFIGLNVPNQMVSWIMNYVTSVTYSIMING 30
RK +SPRC+ KID+ KAY+SI FL+ + + P Q SWIM +T+ ++S+++NG
Sbjct: 17 RKRISPRCLLKIDLHKAYNSISWEFLDWMLKSMGFPTQFCSWIMECITTTSFSVVVNG 74
>ref|XP_006598659.1| PREDICTED: uncharacterized protein LOC102659749 [Glycine max]
Length = 686
Score = 60.1 bits (144), Expect = 3e-07
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Frame = -1
Query: 263 YVPRRLIQHHT*S*T--CKRLWRKGVSPRCMRKIDMQKAYDSIE*SFLN*VFIGLNVPNQ 90
+VP ++I +H T K RKG +PRC+ +ID+QKAYD ++ L V +P +
Sbjct: 273 FVPGQVIHNHILLATELMKGYTRKGGTPRCIMQIDLQKAYDMVDWDALEGVLTEFGLPKK 332
Query: 89 MVSWIMNYVTSVTYSIMING 30
+ W+M +T+V Y ING
Sbjct: 333 FIGWVMKVITTVNYRFNING 352
>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
(fragment)
Length = 1365
Score = 58.5 bits (140), Expect = 1e-06
Identities = 27/50 (54%), Positives = 34/50 (68%)
Frame = -1
Query: 173 KIDMQKAYDSIE*SFLN*VFIGLNVPNQMVSWIMNYVTSVTYSIMINGMP 24
K DM KAYD +E FL + L N+ +SWIMN VTSV+YS++ING P
Sbjct: 573 KTDMSKAYDRVEWPFLETMMTALGFNNKWISWIMNCVTSVSYSVLINGQP 622
>ref|XP_004295858.1| PREDICTED: uncharacterized protein LOC101314838 [Fragaria vesca
subsp. vesca]
Length = 1524
Score = 58.2 bits (139), Expect = 1e-06
Identities = 28/66 (42%), Positives = 39/66 (59%)
Frame = -1
Query: 218 CKRLWRKGVSPRCMRKIDMQKAYDSIE*SFLN*VFIGLNVPNQMVSWIMNYVTSVTYSIM 39
C + ++G C KIDM KAYD +E SFL V L ++ W+MN V +V+YS +
Sbjct: 1049 CLKRRKRGKVGYCALKIDMSKAYDRVEWSFLETVLSKLGFGGNLLRWVMNCVRTVSYSFL 1108
Query: 38 INGMPS 21
+NG PS
Sbjct: 1109 VNGEPS 1114
>gb|AAD24601.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1319
Score = 57.4 bits (137), Expect = 2e-06
Identities = 26/48 (54%), Positives = 34/48 (70%)
Frame = -1
Query: 173 KIDMQKAYDSIE*SFLN*VFIGLNVPNQMVSWIMNYVTSVTYSIMING 30
K DM KAYD +E SFL + + L ++ +SWIM VTSVTYS++ING
Sbjct: 526 KTDMSKAYDRVEWSFLQEILVALGFNDKWISWIMGCVTSVTYSVLING 573
>gb|AAC62779.1| F11O4.2 [Arabidopsis thaliana]
Length = 382
Score = 55.8 bits (133), Expect = 7e-06
Identities = 23/58 (39%), Positives = 41/58 (70%)
Frame = -1
Query: 203 RKGVSPRCMRKIDMQKAYDSIE*SFLN*VFIGLNVPNQMVSWIMNYVTSVTYSIMING 30
++ +S R KID+ KA+DS++ SFL V + +++P++ V WIM VT+ ++S+ +NG
Sbjct: 37 KESISSRYAIKIDISKAFDSVQWSFLRNVLLAMDIPSEFVHWIMLCVTTASFSVQVNG 94
>emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thaliana]
gi|7267919|emb|CAB78261.1| putative reverse
transcriptase [Arabidopsis thaliana]
Length = 662
Score = 55.5 bits (132), Expect = 9e-06
Identities = 25/57 (43%), Positives = 38/57 (66%)
Frame = -1
Query: 203 RKGVSPRCMRKIDMQKAYDSIE*SFLN*VFIGLNVPNQMVSWIMNYVTSVTYSIMIN 33
+ VS RC KID+ KA+DS++ SFL V + L+ P + V WIM VT+ ++S+ +N
Sbjct: 105 KDSVSERCAIKIDISKAFDSVQWSFLRNVLLTLDFPQEFVHWIMLCVTTASFSVQVN 161