BLASTX nr result

ID: Atropa21_contig00027133 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atropa21_contig00027133
         (1234 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAT39297.2| Gag-pol protein, putative [Solanum demissum]            89   3e-15
gb|AAT38724.1| Putative retrotransposon protein, identical [Sola...    86   2e-14
gb|AAT38744.1| Putative gag-pol polyprotein, identical [Solanum ...    86   2e-14
gb|ABI34354.1| Retrotransposon gag protein [Solanum demissum]          86   3e-14
gb|AAV31171.1| Putative polyprotein, identical [Solanum tuberosum]     74   2e-11
ref|XP_004248998.1| PREDICTED: uncharacterized protein LOC101264...    76   2e-11
ref|XP_006364939.1| PREDICTED: uncharacterized protein LOC102581...    70   3e-11
ref|XP_006352152.1| PREDICTED: uncharacterized protein LOC102604...    75   7e-11
gb|AAT38727.1| Polyprotein, putative [Solanum demissum]                69   3e-09
gb|ADU56212.1| gag-pol polyprotein [Solanum lycopersicum]              64   2e-08
ref|XP_006356881.1| PREDICTED: uncharacterized protein LOC102603...    60   6e-07
ref|XP_006358737.1| PREDICTED: uncharacterized protein LOC102605...    60   2e-06
gb|EOY08454.1| DNA/RNA polymerases superfamily protein [Theobrom...    60   2e-06
gb|EOY21491.1| Retrotransposon protein, putative [Theobroma cacao]     60   2e-06
gb|EOY19359.1| Uncharacterized protein TCM_044444 [Theobroma cacao]    60   2e-06
gb|EOY19023.1| Uncharacterized protein TCM_043642 [Theobroma cacao]    60   2e-06
gb|AAT38734.2| Polyprotein, putative [Solanum demissum]                60   2e-06
gb|EOY08678.1| DNA/RNA polymerases superfamily protein [Theobrom...    59   3e-06
gb|EOY08659.1| DNA/RNA polymerases superfamily protein [Theobrom...    59   3e-06
gb|AAO73243.1| putative gag-pol polyprotein [Oryza sativa Japoni...    59   3e-06

>gb|AAT39297.2| Gag-pol protein, putative [Solanum demissum]
          Length = 1554

 Score = 89.4 bits (220), Expect = 3e-15
 Identities = 48/99 (48%), Positives = 60/99 (60%), Gaps = 1/99 (1%)
 Frame = -1

Query: 295  KQFHDPNQLQLKGGIYMYKSMTLEQGEDDGILRHQGKYMRPR-DRHKERIMEEARKFIYS 119
            KQ  DP  L+ K  +   + +  EQG  DG+LR+QG+   P  D  +ERIMEEA    YS
Sbjct: 1129 KQDQDPIFLEFKANVQKQRVLAFEQG-GDGVLRYQGRLCVPMVDGLQERIMEEAHSSRYS 1187

Query: 118  IYLSSTKMYHDFGEIYW*NDMKTNVANYVTKCTKYQQVK 2
            I+  STKMYHD  E+YW N MK  +A +V KC   QQVK
Sbjct: 1188 IHPGSTKMYHDLREVYWWNGMKKGIAEFVAKCPNCQQVK 1226


>gb|AAT38724.1| Putative retrotransposon protein, identical [Solanum demissum]
          Length = 1602

 Score = 86.3 bits (212), Expect = 2e-14
 Identities = 46/99 (46%), Positives = 59/99 (59%), Gaps = 1/99 (1%)
 Frame = -1

Query: 295  KQFHDPNQLQLKGGIYMYKSMTLEQGEDDGILRHQGKYMRPR-DRHKERIMEEARKFIYS 119
            KQ  DP  L+LK  +   + +  EQG  DG+LR+QG+   P  D  +ER+MEEA    YS
Sbjct: 1129 KQDQDPILLELKANVQKQRVLAFEQG-GDGVLRYQGRLCVPMVDGLQERVMEEAHSSRYS 1187

Query: 118  IYLSSTKMYHDFGEIYW*NDMKTNVANYVTKCTKYQQVK 2
            ++  STKMY D  E YW N MK  +A +V KC   QQVK
Sbjct: 1188 VHPGSTKMYRDLREFYWWNGMKKGIAEFVAKCPNCQQVK 1226


>gb|AAT38744.1| Putative gag-pol polyprotein, identical [Solanum demissum]
          Length = 1515

 Score = 86.3 bits (212), Expect = 2e-14
 Identities = 46/99 (46%), Positives = 59/99 (59%), Gaps = 1/99 (1%)
 Frame = -1

Query: 295  KQFHDPNQLQLKGGIYMYKSMTLEQGEDDGILRHQGKYMRPR-DRHKERIMEEARKFIYS 119
            KQ  DP  L+LK  +   + +  EQG  DG+LR+QG+   P  D  +ER+MEEA    YS
Sbjct: 1123 KQDQDPILLELKANVQKQRVLAFEQG-GDGVLRYQGRLCVPMVDGLQERVMEEAHSSRYS 1181

Query: 118  IYLSSTKMYHDFGEIYW*NDMKTNVANYVTKCTKYQQVK 2
            ++  STKMY D  E YW N MK  +A +V KC   QQVK
Sbjct: 1182 VHPGSTKMYRDLREFYWWNGMKKGIAEFVAKCPNCQQVK 1220


>gb|ABI34354.1| Retrotransposon gag protein [Solanum demissum]
          Length = 4543

 Score = 85.9 bits (211), Expect = 3e-14
 Identities = 47/104 (45%), Positives = 61/104 (58%), Gaps = 1/104 (0%)
 Frame = -1

Query: 310  LRKRGKQFHDPNQLQLKGGIYMYKSMTLEQGEDDGILRHQGKYMRPR-DRHKERIMEEAR 134
            L  + KQ  DP  L+LK  +   + +  EQG  DG LR+QG+   P  D  +E+IMEEA 
Sbjct: 900  LEVKKKQDQDPILLELKANVQKQRVLAFEQG-GDGALRYQGRLCVPMVDGLQEKIMEEAH 958

Query: 133  KFIYSIYLSSTKMYHDFGEIYW*NDMKTNVANYVTKCTKYQQVK 2
               YS++  STKMY D  E+YW N MK  +A +V KC   QQVK
Sbjct: 959  SSRYSVHPGSTKMYRDLREVYWWNGMKKGIAEFVAKCPNCQQVK 1002



 Score = 85.9 bits (211), Expect = 3e-14
 Identities = 47/104 (45%), Positives = 61/104 (58%), Gaps = 1/104 (0%)
 Frame = -1

Query: 310  LRKRGKQFHDPNQLQLKGGIYMYKSMTLEQGEDDGILRHQGKYMRPR-DRHKERIMEEAR 134
            L  + KQ  DP  L+LK  +   + +  EQG  DG LR+QG+   P  D  +E+IMEEA 
Sbjct: 2410 LEVKKKQDQDPILLELKANVQKQRVLAFEQG-GDGALRYQGRLCVPMVDGLQEKIMEEAH 2468

Query: 133  KFIYSIYLSSTKMYHDFGEIYW*NDMKTNVANYVTKCTKYQQVK 2
               YS++  STKMY D  E+YW N MK  +A +V KC   QQVK
Sbjct: 2469 SSRYSVHPGSTKMYRDLREVYWWNGMKKGIAEFVAKCPNCQQVK 2512



 Score = 85.9 bits (211), Expect = 3e-14
 Identities = 47/104 (45%), Positives = 61/104 (58%), Gaps = 1/104 (0%)
 Frame = -1

Query: 310  LRKRGKQFHDPNQLQLKGGIYMYKSMTLEQGEDDGILRHQGKYMRPR-DRHKERIMEEAR 134
            L  + KQ  DP  L+LK  +   + +  EQG  DG LR+QG+   P  D  +E+IMEEA 
Sbjct: 3920 LEVKKKQDQDPILLELKANVQKQRVLAFEQG-GDGALRYQGRLCVPMVDGLQEKIMEEAH 3978

Query: 133  KFIYSIYLSSTKMYHDFGEIYW*NDMKTNVANYVTKCTKYQQVK 2
               YS++  STKMY D  E+YW N MK  +A +V KC   QQVK
Sbjct: 3979 SSRYSVHPGSTKMYRDLREVYWWNGMKKGIAEFVAKCPNCQQVK 4022


>gb|AAV31171.1| Putative polyprotein, identical [Solanum tuberosum]
          Length = 1487

 Score = 73.6 bits (179), Expect(3) = 2e-11
 Identities = 40/93 (43%), Positives = 54/93 (58%), Gaps = 1/93 (1%)
 Frame = -1

Query: 277  NQLQLKGGIYMYKSMTLEQGEDDGILRHQGKYMRPR-DRHKERIMEEARKFIYSIYLSST 101
            + L  +  +   + +  EQG  DG+LR+QG+   P  D  ++RIMEEA    YSI+   T
Sbjct: 1020 SSLVSEANVQKQRVLAFEQG-GDGVLRYQGRLCVPMVDGLQKRIMEEAHSSRYSIHPGFT 1078

Query: 100  KMYHDFGEIYW*NDMKTNVANYVTKCTKYQQVK 2
            KMY D  E+YW N MK  +A +V KC   QQVK
Sbjct: 1079 KMYRDLREVYWWNGMKKGIAEFVAKCPNCQQVK 1111



 Score = 21.9 bits (45), Expect(3) = 2e-11
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 374  QLLDLEDGKVVVQDRAKSSLVAE 306
            +L+D   G + V + A+SSLV+E
Sbjct: 1003 RLIDSAKGGISVTNEAESSLVSE 1025



 Score = 20.4 bits (41), Expect(3) = 2e-11
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -2

Query: 444  SIGSLAHVETDKRIMA 397
            S+G+  H+E +KR +A
Sbjct: 976  SMGNTTHIEEEKRELA 991


>ref|XP_004248998.1| PREDICTED: uncharacterized protein LOC101264383 [Solanum
           lycopersicum]
          Length = 256

 Score = 76.3 bits (186), Expect = 2e-11
 Identities = 40/101 (39%), Positives = 62/101 (61%), Gaps = 1/101 (0%)
 Frame = -1

Query: 301 RGKQFHDPNQLQLKGGIYMYKSMTLEQGEDDGILRHQGKY-MRPRDRHKERIMEEARKFI 125
           + KQ  DP  ++LK  +    + +  QGED G+LR+Q +  +   D  +++IM+EA    
Sbjct: 72  KSKQHLDPLFMELKESVLNKNNESFSQGED-GVLRYQERLCVLDVDGLRDKIMDEAHGSR 130

Query: 124 YSIYLSSTKMYHDFGEIYW*NDMKTNVANYVTKCTKYQQVK 2
           YSI+   TKMYHDF +IYW N +K  VA +V++C  + Q+K
Sbjct: 131 YSIHPGDTKMYHDFRDIYWWNGIKREVAKFVSRCPNWHQIK 171


>ref|XP_006364939.1| PREDICTED: uncharacterized protein LOC102581051 [Solanum tuberosum]
          Length = 1946

 Score = 70.5 bits (171), Expect(3) = 3e-11
 Identities = 42/99 (42%), Positives = 57/99 (57%), Gaps = 1/99 (1%)
 Frame = -1

Query: 295  KQFHDPNQLQLKGGIYMYKSMTLEQGEDDGILRHQGKYMRPR-DRHKERIMEEARKFIYS 119
            KQ  D + L+LK  +   K     QG  DG LR+QG+   P  D  +E+I+EEA    YS
Sbjct: 1474 KQDLDSSLLELKALVKEGKVEVFSQG-GDGALRYQGRLCVPCVDGLREKILEEAHNSSYS 1532

Query: 118  IYLSSTKMYHDFGEIYW*NDMKTNVANYVTKCTKYQQVK 2
            I+  STKMY D  ++YW   MK ++A +V+ C   QQVK
Sbjct: 1533 IHPGSTKMYRDLRDVYWWGGMKKDIAKFVSGCHSCQQVK 1571



 Score = 23.1 bits (48), Expect(3) = 3e-11
 Identities = 16/35 (45%), Positives = 23/35 (65%)
 Frame = -3

Query: 410  RELWLVAETRVFQLLDLEDGKVVVQDRAKSSLVAE 306
            RE+  +A   V +L ++ +G VVV D A+SSLV E
Sbjct: 1437 REVHRLARLGV-RLEEVGNGGVVVVDGARSSLVDE 1470



 Score = 21.9 bits (45), Expect(3) = 3e-11
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 444  SIGSLAHVETDKRIMA 397
            S+GSLAHV+   R MA
Sbjct: 1421 SMGSLAHVDIGDREMA 1436


>ref|XP_006352152.1| PREDICTED: uncharacterized protein LOC102604634 [Solanum tuberosum]
          Length = 427

 Score = 74.7 bits (182), Expect = 7e-11
 Identities = 39/99 (39%), Positives = 61/99 (61%), Gaps = 2/99 (2%)
 Frame = -1

Query: 292 QFHDPNQLQLKGGIYMYKSMTLEQGEDDGILRHQGKYMRPR-DRHKERIMEEARKFIYSI 116
           + + P  L L+G ++  +   + QG  DG+L +QG+   P+ D  +++I+ EA    YSI
Sbjct: 175 RMNPPEFLGLQGAVHQQRVEVISQG-GDGVLHYQGRLCVPKVDELRQQILAEAHNSRYSI 233

Query: 115 YLS-STKMYHDFGEIYW*NDMKTNVANYVTKCTKYQQVK 2
           +   +TKMY D  E++W NDMK ++AN+V KC   QQVK
Sbjct: 234 HPGGTTKMYRDLREVFWWNDMKRDIANFVAKCLNSQQVK 272


>gb|AAT38727.1| Polyprotein, putative [Solanum demissum]
          Length = 304

 Score = 69.3 bits (168), Expect = 3e-09
 Identities = 37/79 (46%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
 Frame = -1

Query: 235 MTLEQGEDDGILRHQGKYMRPR-DRHKERIMEEARKFIYSIYLSSTKMYHDFGEIYW*ND 59
           M  EQG  DG+LR+QG+   P+ D  ++RIMEEA    Y I+   TKMY     +YW   
Sbjct: 1   MDFEQG-GDGVLRYQGRLCEPKVDELQDRIMEEAHSSKYFIHPGGTKMYRYLRGVYWWIS 59

Query: 58  MKTNVANYVTKCTKYQQVK 2
           MKT +  +V KC  YQQVK
Sbjct: 60  MKTCIVEFVAKCPNYQQVK 78


>gb|ADU56212.1| gag-pol polyprotein [Solanum lycopersicum]
          Length = 624

 Score = 63.5 bits (153), Expect(2) = 2e-08
 Identities = 34/101 (33%), Positives = 59/101 (58%), Gaps = 1/101 (0%)
 Frame = -1

Query: 301 RGKQFHDPNQLQLKGGIYMYKSMTLEQGEDDGILRHQGKYMRPR-DRHKERIMEEARKFI 125
           +GKQF+D   ++++  +   ++    Q +++G+LR +G+   PR D     I+ EA    
Sbjct: 506 KGKQFNDEKLIRIRDKVLRGEAKEA-QIDEEGVLRIKGRVCVPRVDDLINTILTEAHSSR 564

Query: 124 YSIYLSSTKMYHDFGEIYW*NDMKTNVANYVTKCTKYQQVK 2
           YSI+  +TKMY D  + +W + MK ++ N++ KC   QQVK
Sbjct: 565 YSIHPGATKMYRDLKQHFWWSRMKRDIVNFIAKCPNCQQVK 605



 Score = 23.1 bits (48), Expect(2) = 2e-08
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 456 RKKSSIGSLAHVETDKRIMA 397
           RK  S+GSLAH++  +  +A
Sbjct: 451 RKAGSMGSLAHLQASRHPLA 470


>ref|XP_006356881.1| PREDICTED: uncharacterized protein LOC102603208 [Solanum tuberosum]
          Length = 375

 Score = 60.1 bits (144), Expect(2) = 6e-07
 Identities = 34/100 (34%), Positives = 48/100 (48%)
 Frame = -1

Query: 301 RGKQFHDPNQLQLKGGIYMYKSMTLEQGEDDGILRHQGKYMRPRDRHKERIMEEARKFIY 122
           + K+  DP  ++LK            QG DD +              +E I+ E     Y
Sbjct: 51  KAKKSLDPTLVELKEAGLKKSVEDFSQGGDDDL--------------REHIISETDSSRY 96

Query: 121 SIYLSSTKMYHDFGEIYW*NDMKTNVANYVTKCTKYQQVK 2
           SI+L +T+MYHD  EIYW N MK ++  +V KC   QQ+K
Sbjct: 97  SIHLGATEMYHDLREIYWWNGMKKDIEEFVVKCPNCQQLK 136



 Score = 21.6 bits (44), Expect(2) = 6e-07
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = -2

Query: 441 IGSLAHVETDKR 406
           +GS+AH+E DK+
Sbjct: 1   MGSVAHIEDDKK 12


>ref|XP_006358737.1| PREDICTED: uncharacterized protein LOC102605124 [Solanum tuberosum]
          Length = 780

 Score = 60.1 bits (144), Expect = 2e-06
 Identities = 37/99 (37%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
 Frame = -1

Query: 295 KQFHDPNQLQLKGGIYMYKSMTLEQGEDDGILRHQGKYMRPR-DRHKERIMEEARKFIYS 119
           KQF D    +LK  +    +   E  +D G+L  Q +   P  +  ++RIM EA    YS
Sbjct: 430 KQFKDLKIQRLKENVNQGTTKGFELTQD-GVLCCQNRLCVPNVNGLRKRIMTEAHHSRYS 488

Query: 118 IYLSSTKMYHDFGEIYW*NDMKTNVANYVTKCTKYQQVK 2
           I+  STKMYHD   +YW  DMK  +  +V +C   Q+VK
Sbjct: 489 IHPGSTKMYHDLKGVYWWRDMKKYIVEFVAQCPNCQRVK 527


>gb|EOY08454.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
          Length = 1400

 Score = 60.1 bits (144), Expect = 2e-06
 Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
 Frame = -1

Query: 211  DGILRHQGK-YMRPRDRHKERIMEEARKFIYSIYLSSTKMYHDFGEIYW*NDMKTNVANY 35
            DG+LR+  + Y+   D  +  I+EEA    Y ++  +TKMY D  E+YW  ++K +VA +
Sbjct: 1009 DGVLRYGTRLYVPDGDGLRREILEEAHMVAYVVHPGATKMYQDLKEVYWWEELKRDVAEF 1068

Query: 34   VTKCTKYQQVK 2
            V+KC   QQVK
Sbjct: 1069 VSKCLVCQQVK 1079


>gb|EOY21491.1| Retrotransposon protein, putative [Theobroma cacao]
          Length = 1145

 Score = 59.7 bits (143), Expect = 2e-06
 Identities = 33/102 (32%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
 Frame = -1

Query: 304  KRGKQFHDPNQLQLKGGIYMYKSMTLEQGEDDGILRHQGK-YMRPRDRHKERIMEEARKF 128
            KR +Q +  + L++   ++  K         DG++R+  + Y+   D  +  I+EEA   
Sbjct: 804  KRHEQNYLAHDLEMAAIVFALKFWRHYLYGTDGVMRYGTRIYVPASDGLRREILEEAHMA 863

Query: 127  IYSIYLSSTKMYHDFGEIYW*NDMKTNVANYVTKCTKYQQVK 2
             Y ++ S+TKMY D  E+YW   +K +V  +V+KC   QQVK
Sbjct: 864  AYVVHPSATKMYQDLKEVYWWEGLKKDVTEFVSKCLVCQQVK 905


>gb|EOY19359.1| Uncharacterized protein TCM_044444 [Theobroma cacao]
          Length = 453

 Score = 59.7 bits (143), Expect = 2e-06
 Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
 Frame = -1

Query: 214 DDGILRHQGKYMRPRDRH-KERIMEEARKFIYSIYLSSTKMYHDFGEIYW*NDMKTNVAN 38
           DDG L  + +   P+D   ++ I+EEA   +Y+++  STKMY    E YW   MK ++A 
Sbjct: 317 DDGTLMFRDRICVPKDDQLRQAILEEAHSSVYALHPRSTKMYRTIKESYWWPSMKRDIAE 376

Query: 37  YVTKCTKYQQVK 2
           ++TKC   QQ+K
Sbjct: 377 FITKCLTCQQIK 388


>gb|EOY19023.1| Uncharacterized protein TCM_043642 [Theobroma cacao]
          Length = 295

 Score = 59.7 bits (143), Expect = 2e-06
 Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
 Frame = -1

Query: 211 DGILRHQGK-YMRPRDRHKERIMEEARKFIYSIYLSSTKMYHDFGEIYW*NDMKTNVANY 35
           DG+LR+  K Y+   D  ++ I+EEA    Y ++  + KMY D  E+YW   +K NVA +
Sbjct: 7   DGVLRYGTKLYVPDGDGLRKEILEEAHMAAYMVHPGAIKMYQDLKEVYWWEGLKKNVAEF 66

Query: 34  VTKCTKYQQVK 2
           ++KC   QQVK
Sbjct: 67  ISKCLVCQQVK 77


>gb|AAT38734.2| Polyprotein, putative [Solanum demissum]
          Length = 513

 Score = 59.7 bits (143), Expect = 2e-06
 Identities = 27/56 (48%), Positives = 35/56 (62%)
 Frame = -1

Query: 169 DRHKERIMEEARKFIYSIYLSSTKMYHDFGEIYW*NDMKTNVANYVTKCTKYQQVK 2
           D  +E ++EEA    YS +  +TKMYHD  E+YW N MK  +A +V KC   QQVK
Sbjct: 113 DGLREYVLEEAHGSRYSTHSGATKMYHDLWEVYWWNGMKKKIAGFVVKCPNCQQVK 168


>gb|EOY08678.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
          Length = 666

 Score = 59.3 bits (142), Expect = 3e-06
 Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
 Frame = -1

Query: 211 DGILRHQGK-YMRPRDRHKERIMEEARKFIYSIYLSSTKMYHDFGEIYW*NDMKTNVANY 35
           DG+LR+  + Y+   D  + +I+EEA    Y ++  +TKMY D  E+YW   +K +VA +
Sbjct: 332 DGVLRYGTRLYVPDGDGLRRKILEEAHMAAYVVHPGATKMYQDLKEVYWWEGLKRDVAEF 391

Query: 34  VTKCTKYQQVK 2
           V+KC   QQVK
Sbjct: 392 VSKCLVCQQVK 402


>gb|EOY08659.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
          Length = 937

 Score = 59.3 bits (142), Expect = 3e-06
 Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
 Frame = -1

Query: 211 DGILRHQGK-YMRPRDRHKERIMEEARKFIYSIYLSSTKMYHDFGEIYW*NDMKTNVANY 35
           DG+LR+  + Y+   D  +  I+EEA    Y I+  +TKMY D  E+YW   +K +VA +
Sbjct: 468 DGVLRYGTRLYVPDSDGLRREILEEAHMAAYVIHPGATKMYQDLKEVYWWEGLKRDVAEF 527

Query: 34  VTKCTKYQQVK 2
           V+KC   QQVK
Sbjct: 528 VSKCLVCQQVK 538


>gb|AAO73243.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
           gi|108709214|gb|ABF97009.1| retrotransposon protein,
           putative, Ty3-gypsy subclass [Oryza sativa Japonica
           Group]
          Length = 313

 Score = 59.3 bits (142), Expect = 3e-06
 Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
 Frame = -1

Query: 232 TLEQGEDDGILRHQGKYMRPRDRH-KERIMEEARKFIYSIYLSSTKMYHDFGEIYW*NDM 56
           T    ++ G ++ +G+   P  +  ++ I+EEA   ++SI+L STKMYHD  + +W  +M
Sbjct: 171 TYSTKDEQGTIKFKGRLCIPDKKEIRDMILEEAHDSVFSIHLGSTKMYHDLKDTFWWKNM 230

Query: 55  KTNVANYVTKCTKYQQVK 2
           +  +A YV  C   Q+VK
Sbjct: 231 RMEIAEYVNLCDVCQKVK 248


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