BLASTX nr result

ID: Atropa21_contig00026701 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atropa21_contig00026701
         (3090 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAT38724.1| Putative retrotransposon protein, identical [Sola...   343   0.0  
gb|AAT38744.1| Putative gag-pol polyprotein, identical [Solanum ...   345   0.0  
gb|ABI34354.1| Retrotransposon gag protein [Solanum demissum]         259   e-174
gb|AAV31171.1| Putative polyprotein, identical [Solanum tuberosum]    305   e-168
ref|XP_006364939.1| PREDICTED: uncharacterized protein LOC102581...   291   e-166
gb|AAT39297.2| Gag-pol protein, putative [Solanum demissum]           340   e-163
gb|EOY19264.1| Uncharacterized protein TCM_044274 [Theobroma cacao]   257   e-140
gb|EOY08678.1| DNA/RNA polymerases superfamily protein [Theobrom...   256   e-136
dbj|BAL46523.1| hypothetical protein [Gentiana scabra x Gentiana...   248   e-131
gb|EOY14099.1| DNA/RNA polymerases superfamily protein [Theobrom...   247   e-128
gb|EOY03078.1| Retrotransposon protein, putative [Theobroma cacao]    251   e-127
gb|EOY21478.1| DNA/RNA polymerases superfamily protein [Theobrom...   257   e-125
gb|EOY26451.1| DNA/RNA polymerases superfamily protein [Theobrom...   255   e-123
gb|ABA95392.1| retrotransposon protein, putative, Ty3-gypsy subc...   192   e-122
gb|EOY08454.1| DNA/RNA polymerases superfamily protein [Theobrom...   255   e-119
gb|EOY20275.1| DNA/RNA polymerases superfamily protein [Theobrom...   231   e-104
gb|EOY08659.1| DNA/RNA polymerases superfamily protein [Theobrom...   256   e-100
gb|EOY08667.1| Retrotransposon protein, Ty3-gypsy subclass, puta...   257   1e-98
gb|EOY03326.1| DNA/RNA polymerases superfamily protein [Theobrom...   291   3e-97
gb|EOY21678.1| DNA/RNA polymerases superfamily protein [Theobrom...   257   5e-97

>gb|AAT38724.1| Putative retrotransposon protein, identical [Solanum demissum]
          Length = 1602

 Score =  319 bits (817), Expect(3) = 0.0
 Identities = 153/211 (72%), Positives = 175/211 (82%)
 Frame = +3

Query: 1977 RGDDGTLRYRSRLCIPYVDGLKEKIMEKIHNSRYSIHPGYTKMYHNLNEIYWLNDMKRNI 2156
            +G DG LRY+ RLC+P VDGL+E++ME+ H+SRYS+HPG TKMY +L E YW N MK+ I
Sbjct: 1153 QGGDGVLRYQGRLCVPMVDGLQERVMEEAHSSRYSVHPGSTKMYRDLREFYWWNGMKKGI 1212

Query: 2157 EDFIDKCSNCQ*VKAE*QRPGGLAQNINIPV*K*EMINMDFIAGLPRSS*RHDLIWVIVD 2336
             +F+ KC NCQ VK E QRPGGLAQNI +P  K EMINMDFI GLPRS  +HD IWVIVD
Sbjct: 1213 AEFVAKCPNCQQVKVEHQRPGGLAQNIELPEWKWEMINMDFITGLPRSRRQHDSIWVIVD 1272

Query: 2337 RLTKSAHFLPVKTTDSAEDYAKLYIQEIVRLHGTSVSIILDCGAQFTAHFWKSFQKGLGT 2516
            R+TKSAHFLPVKTT SAEDYAKLYIQEIVRLHG  +SII D GAQFTA FWKSFQKGLG+
Sbjct: 1273 RMTKSAHFLPVKTTHSAEDYAKLYIQEIVRLHGVPISIISDRGAQFTAQFWKSFQKGLGS 1332

Query: 2517 KVNLNTVFHPQTDGHKEQTI*TLEDILRACV 2609
            KV+L+T FHPQTDG  E+TI TLED+LRACV
Sbjct: 1333 KVSLSTAFHPQTDGQAERTIQTLEDMLRACV 1363



 Score =  234 bits (598), Expect(3) = 0.0
 Identities = 138/286 (48%), Positives = 179/286 (62%), Gaps = 1/286 (0%)
 Frame = +1

Query: 1126 GEGVKVGFQKIEAVKN*PQTYLNLRDKKFLRSGMLLQALLEGFYSILDSLIRLTQKKVKF 1305
            G+G+KV  +KIEAV+N P+       + FL      +  +EGF SI   L +LTQK  KF
Sbjct: 869  GDGIKVDTRKIEAVQNWPRPTSPTEIRSFLGLAGYYRRFVEGFSSIASPLTKLTQKTGKF 928

Query: 1306 QWPDA*EHSFEELKMRLTFFLVLTLSEGTYGFVVYYDALGVGHECIIMQHGKVIAYASRQ 1485
            QW +A E SF+ELK RL    VLTL EGT G VVY DA  +G  C++MQ+GKVIAYASRQ
Sbjct: 929  QWSEACEKSFQELKKRLITAPVLTLPEGTQGLVVYCDASRIGLGCVLMQNGKVIAYASRQ 988

Query: 1486 LKTYEKNYLTHNLELIVMVFTLKI*RYYLYGVHIDIFIDHKSLQYIFKQRKLNLKQNRRL 1665
            LK +EKNY TH+LEL V+VF LK+ R+YLYGVH+DIF DHKSLQY+  Q+ LNL+Q R L
Sbjct: 989  LKVHEKNYPTHDLELAVVVFALKLWRHYLYGVHVDIFTDHKSLQYVLTQKALNLRQRRWL 1048

Query: 1666 ELKKTMM*MSSIIQEK*ICS*CS*SAID-GNLSPC*RKNRTMTKEIHRLTSLEV*LLDTE 1842
            EL K           K      S S +  G+ +      R + K++HRL  L V   D+ 
Sbjct: 1049 ELLKDYDLSILYHPGKANVVADSLSRLSMGSTTHIEEGRRELAKDMHRLACLGVRFTDST 1108

Query: 1843 DGDMFV*NRFESSLVAEVKEK*FNDPYLLQLKEGIHNHKTTTFKQG 1980
            +G + V ++ ESSL++EVKEK   DP LL+LK  +   +   F+QG
Sbjct: 1109 EGGIAVTSKAESSLMSEVKEKQDQDPILLELKANVQKQRVLAFEQG 1154



 Score =  165 bits (417), Expect(3) = 0.0
 Identities = 83/131 (63%), Positives = 99/131 (75%)
 Frame = +2

Query: 2612 DFKGNWDDCFTLIEFVYNNSYHTSIKMTPLKALYGQRCRSLIDWFEVGETELLRLDLVYQ 2791
            DFK NWDD   LIEF YNNSYH+SI+M P +ALYG+RCRS I WFEVGE  L+  DLV+Q
Sbjct: 1365 DFKSNWDDHLPLIEFAYNNSYHSSIQMAPYEALYGRRCRSPIGWFEVGEARLIGPDLVHQ 1424

Query: 2792 VMEKVKLIQEHLKIAWSIQKSYSNVRCTDLEFQVDN*VFMKVLPIKGVMRFEKKGKLSPD 2971
             MEKVK+IQE LK A S QKSY++VR   LEF+VD+ V++KV P+KGVMRF KKGKLSP 
Sbjct: 1425 AMEKVKVIQERLKTAQSRQKSYTDVRRRALEFEVDDWVYLKVSPMKGVMRFGKKGKLSPR 1484

Query: 2972 IFNHTRSYERL 3004
                 R  +R+
Sbjct: 1485 YIGPYRIVQRV 1495



 Score =  343 bits (880), Expect(2) = 2e-99
 Identities = 187/376 (49%), Positives = 249/376 (66%)
 Frame = +2

Query: 116  VYHRIIITNLVELEMVDFDIIMNMDWLSSYYVSLGCRTKIVSFEFPSKPIIE*KDDAVSL 295
            + H+  + +L+EL+MVDFD+I+ MDWL + Y S+ CRT++V F+FPS+PI+E    +   
Sbjct: 536  INHKSTMVDLIELDMVDFDVILGMDWLHACYASIDCRTRVVKFQFPSEPILEWSSSSAVP 595

Query: 296  IGRFVSYLKVRKMISKEYIYYLVLVRDTDTQTPTF*SMPIVSEFLEVFSKDLPKVLSDRE 475
             GRF+SYLK RK++SK  IY+L  V D+  + P F S+PIV EF EVF  DLP +  +RE
Sbjct: 596  KGRFISYLKARKLVSKGCIYHLARVNDSSVEIPYFQSVPIVREFPEVFPDDLPGIPPERE 655

Query: 476  IKFRLDLLSDTKTIPISPYRMALIELKELKSVKISL**EIY*AKCLTLGCTVLFVRKKYG 655
            I F +DL+ DT+ I I PYRMA  ELKELK +   L            G  VLFVRKK G
Sbjct: 656  IDFGIDLIPDTRPISIPPYRMAPAELKELKDL---LEKGFIRPSVSPWGAPVLFVRKKDG 712

Query: 656  SIHMYIDYHQLNKVTIKNKYSLSRIDDLFEQLQGV*CYSKINIILGYHQFKVKRVDILKI 835
            S+ + IDY QLNKVTIKNKY L RIDDLF+QLQG  C+SKI++  GYHQ +V+  DI K 
Sbjct: 713  SLRICIDYRQLNKVTIKNKYPLPRIDDLFDQLQGATCFSKIDLRSGYHQLRVRERDIPKT 772

Query: 836  AFKTRYRHFEFCVISFGLTNAPAVFY*SYEQDLQALL*SFDYCVY**YSNLFS**G*SYR 1015
            AF+TRY H+EF V+SFGLTNAPA F     +  +  L  F   ++     ++S     + 
Sbjct: 773  AFRTRYGHYEFLVMSFGLTNAPAAFMDLMNRVFRPYLDMF-VIIFIDDILIYSRNEEDHA 831

Query: 1016 TSQNSIANTVQDLKLYAKNFKCEFWLKSMAFLGHLILEKA*RLVFRKLRQ*RISPRPTSI 1195
            +   ++  T++D +LYAK  KCEFWLKS+AFLGH++     ++  RK+   +  PRPTS 
Sbjct: 832  SHLRTVLQTLKDKELYAKFSKCEFWLKSVAFLGHIVSGDGIKVDTRKIEAVQNWPRPTSP 891

Query: 1196 SEIRNFLGLACYYRRF 1243
            +EIR+FLGLA YYRRF
Sbjct: 892  TEIRSFLGLAGYYRRF 907



 Score = 49.3 bits (116), Expect(2) = 2e-99
 Identities = 23/37 (62%), Positives = 27/37 (72%)
 Frame = +3

Query: 3   VAKKFRIEQERLHKPFEVFTPVGESVIVRRVYRSCPV 113
           VA KF +  ERL +PF V TPVGES++  RVYR CPV
Sbjct: 498 VANKFDVLPERLCEPFCVSTPVGESILAERVYRDCPV 534



 Score = 63.2 bits (152), Expect = 7e-07
 Identities = 28/55 (50%), Positives = 39/55 (70%)
 Frame = +1

Query: 2926 KGCDEI*KERKTQSRYI*PYKILRKIDQVSYELELPQDLIIVHLVFHVSMFRKCV 3090
            KG     K+ K   RYI PY+I++++  V+YELELPQ+L  VH VFH+SM +KC+
Sbjct: 1470 KGVMRFGKKGKLSPRYIGPYRIVQRVGSVAYELELPQELAAVHPVFHISMLKKCI 1524


>gb|AAT38744.1| Putative gag-pol polyprotein, identical [Solanum demissum]
          Length = 1515

 Score =  318 bits (814), Expect(3) = 0.0
 Identities = 152/211 (72%), Positives = 175/211 (82%)
 Frame = +3

Query: 1977 RGDDGTLRYRSRLCIPYVDGLKEKIMEKIHNSRYSIHPGYTKMYHNLNEIYWLNDMKRNI 2156
            +G DG LRY+ RLC+P VDGL+E++ME+ H+SRYS+HPG TKMY +L E YW N MK+ I
Sbjct: 1147 QGGDGVLRYQGRLCVPMVDGLQERVMEEAHSSRYSVHPGSTKMYRDLREFYWWNGMKKGI 1206

Query: 2157 EDFIDKCSNCQ*VKAE*QRPGGLAQNINIPV*K*EMINMDFIAGLPRSS*RHDLIWVIVD 2336
             +F+ KC NCQ VK E QRPGGLAQNI +P  K EMINMDFI GLPRS  +HD IWVIVD
Sbjct: 1207 AEFVAKCPNCQQVKVEHQRPGGLAQNIELPEWKWEMINMDFITGLPRSRRQHDSIWVIVD 1266

Query: 2337 RLTKSAHFLPVKTTDSAEDYAKLYIQEIVRLHGTSVSIILDCGAQFTAHFWKSFQKGLGT 2516
            R+TKSAHFLPV+TT SAEDYAKLYIQEIVRLHG  +SII D GAQFTA FWKSFQKGLG+
Sbjct: 1267 RMTKSAHFLPVRTTHSAEDYAKLYIQEIVRLHGVPISIISDRGAQFTAQFWKSFQKGLGS 1326

Query: 2517 KVNLNTVFHPQTDGHKEQTI*TLEDILRACV 2609
            KV+L+T FHPQTDG  E+TI TLED+LRACV
Sbjct: 1327 KVSLSTAFHPQTDGQAERTIQTLEDMLRACV 1357



 Score =  235 bits (600), Expect(3) = 0.0
 Identities = 138/286 (48%), Positives = 180/286 (62%), Gaps = 1/286 (0%)
 Frame = +1

Query: 1126 GEGVKVGFQKIEAVKN*PQTYLNLRDKKFLRSGMLLQALLEGFYSILDSLIRLTQKKVKF 1305
            G+G+KV  +KIEAV+N P+       + FL      +  +EGF SI   L +LTQK  KF
Sbjct: 863  GDGIKVDTRKIEAVQNWPRPTSPTEIRSFLGLAGYYRRFVEGFSSIASPLTKLTQKTGKF 922

Query: 1306 QWPDA*EHSFEELKMRLTFFLVLTLSEGTYGFVVYYDALGVGHECIIMQHGKVIAYASRQ 1485
            QW +A E SF+ELK RL    VLTL EGT G VVY DA  +G  C++MQ+GKVIAYASRQ
Sbjct: 923  QWSEACEKSFQELKKRLITAPVLTLPEGTQGLVVYCDASRIGLGCVLMQNGKVIAYASRQ 982

Query: 1486 LKTYEKNYLTHNLELIVMVFTLKI*RYYLYGVHIDIFIDHKSLQYIFKQRKLNLKQNRRL 1665
            LK +EKNY TH+LEL V+VF LK+ R+YLYGVH+DIF DHKSLQY+  Q++LNL+Q R L
Sbjct: 983  LKVHEKNYPTHDLELAVVVFALKLWRHYLYGVHVDIFTDHKSLQYVLTQKELNLRQRRWL 1042

Query: 1666 ELKKTMM*MSSIIQEK*ICS*CS*SAID-GNLSPC*RKNRTMTKEIHRLTSLEV*LLDTE 1842
            EL K           K      S S +  G+ +      R + K++HRL  L V   D+ 
Sbjct: 1043 ELLKDYDLSILYHPGKANVVADSLSRLSMGSTTHIEEGRRELAKDMHRLACLGVRFTDST 1102

Query: 1843 DGDMFV*NRFESSLVAEVKEK*FNDPYLLQLKEGIHNHKTTTFKQG 1980
            +G + V ++ ESSL++EVKEK   DP LL+LK  +   +   F+QG
Sbjct: 1103 EGGIAVTSKAESSLMSEVKEKQDQDPILLELKANVQKQRVLAFEQG 1148



 Score =  165 bits (417), Expect(3) = 0.0
 Identities = 83/131 (63%), Positives = 99/131 (75%)
 Frame = +2

Query: 2612 DFKGNWDDCFTLIEFVYNNSYHTSIKMTPLKALYGQRCRSLIDWFEVGETELLRLDLVYQ 2791
            DFK NWDD   LIEF YNNSYH+SI+M P +ALYG+RCRS I WFEVGE  L+  DLV+Q
Sbjct: 1359 DFKSNWDDHLPLIEFAYNNSYHSSIQMAPYEALYGRRCRSPIGWFEVGEARLIGPDLVHQ 1418

Query: 2792 VMEKVKLIQEHLKIAWSIQKSYSNVRCTDLEFQVDN*VFMKVLPIKGVMRFEKKGKLSPD 2971
             MEKVK+IQE LK A S QKSY++VR   LEF+VD+ V++KV P+KGVMRF KKGKLSP 
Sbjct: 1419 AMEKVKVIQERLKTAQSRQKSYTDVRRRALEFEVDDWVYLKVSPMKGVMRFGKKGKLSPR 1478

Query: 2972 IFNHTRSYERL 3004
                 R  +R+
Sbjct: 1479 YIGPYRIVQRV 1489



 Score =  345 bits (885), Expect(2) = e-100
 Identities = 188/376 (50%), Positives = 249/376 (66%)
 Frame = +2

Query: 116  VYHRIIITNLVELEMVDFDIIMNMDWLSSYYVSLGCRTKIVSFEFPSKPIIE*KDDAVSL 295
            + H+  + +L+EL+MVDFD+I+ MDWL + Y S+ CRT++V F+FPS+PI+E    +   
Sbjct: 530  INHKSTMVDLIELDMVDFDVILGMDWLHACYASIDCRTRVVKFQFPSEPILEWSSSSAVP 589

Query: 296  IGRFVSYLKVRKMISKEYIYYLVLVRDTDTQTPTF*SMPIVSEFLEVFSKDLPKVLSDRE 475
             GRF+SYLK RK++SK  IY+L  V D+  + P F S+PIV EF EVF  DLP +  +RE
Sbjct: 590  KGRFISYLKARKLVSKGCIYHLARVNDSSVEIPYFQSVPIVREFPEVFPNDLPGIPPERE 649

Query: 476  IKFRLDLLSDTKTIPISPYRMALIELKELKSVKISL**EIY*AKCLTLGCTVLFVRKKYG 655
            I F +DL+ DT+ I I PYRMA  ELKELK +   L            G  VLFVRKK G
Sbjct: 650  IDFGIDLIPDTRPISIPPYRMAPAELKELKDL---LEKGFIRPSVSPWGAPVLFVRKKDG 706

Query: 656  SIHMYIDYHQLNKVTIKNKYSLSRIDDLFEQLQGV*CYSKINIILGYHQFKVKRVDILKI 835
            S+ M IDY QLNKVTIKNKY L RIDDLF+QLQG  C+SKI++  GYHQ +V+  DI K 
Sbjct: 707  SLRMCIDYRQLNKVTIKNKYPLPRIDDLFDQLQGATCFSKIDLRSGYHQLRVRERDIPKT 766

Query: 836  AFKTRYRHFEFCVISFGLTNAPAVFY*SYEQDLQALL*SFDYCVY**YSNLFS**G*SYR 1015
            AF+TRY H+EF V+SFGLTNAPA F     +  +  L  F   ++     ++S     + 
Sbjct: 767  AFRTRYGHYEFLVMSFGLTNAPAAFMDLMNRVFRPYLDMF-VIIFIDDILIYSRNEEDHA 825

Query: 1016 TSQNSIANTVQDLKLYAKNFKCEFWLKSMAFLGHLILEKA*RLVFRKLRQ*RISPRPTSI 1195
            +   ++  T++D +LYAK  KCEFWLKS+AFLGH++     ++  RK+   +  PRPTS 
Sbjct: 826  SHLRTVLQTLKDKELYAKFSKCEFWLKSVAFLGHIVSGDGIKVDTRKIEAVQNWPRPTSP 885

Query: 1196 SEIRNFLGLACYYRRF 1243
            +EIR+FLGLA YYRRF
Sbjct: 886  TEIRSFLGLAGYYRRF 901



 Score = 49.3 bits (116), Expect(2) = e-100
 Identities = 23/37 (62%), Positives = 27/37 (72%)
 Frame = +3

Query: 3   VAKKFRIEQERLHKPFEVFTPVGESVIVRRVYRSCPV 113
           VA KF +  ERL +PF V TPVGES++  RVYR CPV
Sbjct: 492 VANKFDVLPERLCEPFCVSTPVGESILAERVYRDCPV 528


>gb|ABI34354.1| Retrotransposon gag protein [Solanum demissum]
          Length = 4543

 Score =  259 bits (663), Expect(3) = e-174
 Identities = 130/211 (61%), Positives = 151/211 (71%)
 Frame = +3

Query: 1977 RGDDGTLRYRSRLCIPYVDGLKEKIMEKIHNSRYSIHPGYTKMYHNLNEIYWLNDMKRNI 2156
            +G DG LRY+ RLC+P VDGL+EKIME+ H+SRYS+HPG TKMY +L E+YW N MK+ I
Sbjct: 929  QGGDGALRYQGRLCVPMVDGLQEKIMEEAHSSRYSVHPGSTKMYRDLREVYWWNGMKKGI 988

Query: 2157 EDFIDKCSNCQ*VKAE*QRPGGLAQNINIPV*K*EMINMDFIAGLPRSS*RHDLIWVIVD 2336
             +F+ KC NCQ VK E QRPGGLAQ I +P  K EMINMDFI GLPRS  +HD IWVIVD
Sbjct: 989  AEFVAKCPNCQQVKVEHQRPGGLAQRIELPEWKWEMINMDFITGLPRSRRQHDSIWVIVD 1048

Query: 2337 RLTKSAHFLPVKTTDSAEDYAKLYIQEIVRLHGTSVSIILDCGAQFTAHFWKSFQKGLGT 2516
            R+TKSAHFLPVKTT++ EDYAKLY+QEI                           KGLG+
Sbjct: 1049 RMTKSAHFLPVKTTNTTEDYAKLYVQEI---------------------------KGLGS 1081

Query: 2517 KVNLNTVFHPQTDGHKEQTI*TLEDILRACV 2609
            KVNL+T FHPQTDG  E TI  LED+LRACV
Sbjct: 1082 KVNLSTAFHPQTDGQAEHTIQILEDMLRACV 1112



 Score =  259 bits (663), Expect(3) = e-174
 Identities = 130/211 (61%), Positives = 151/211 (71%)
 Frame = +3

Query: 1977 RGDDGTLRYRSRLCIPYVDGLKEKIMEKIHNSRYSIHPGYTKMYHNLNEIYWLNDMKRNI 2156
            +G DG LRY+ RLC+P VDGL+EKIME+ H+SRYS+HPG TKMY +L E+YW N MK+ I
Sbjct: 2439 QGGDGALRYQGRLCVPMVDGLQEKIMEEAHSSRYSVHPGSTKMYRDLREVYWWNGMKKGI 2498

Query: 2157 EDFIDKCSNCQ*VKAE*QRPGGLAQNINIPV*K*EMINMDFIAGLPRSS*RHDLIWVIVD 2336
             +F+ KC NCQ VK E QRPGGLAQ I +P  K EMINMDFI GLPRS  +HD IWVIVD
Sbjct: 2499 AEFVAKCPNCQQVKVEHQRPGGLAQRIELPEWKWEMINMDFITGLPRSRRQHDSIWVIVD 2558

Query: 2337 RLTKSAHFLPVKTTDSAEDYAKLYIQEIVRLHGTSVSIILDCGAQFTAHFWKSFQKGLGT 2516
            R+TKSAHFLPVKTT++ EDYAKLY+QEI                           KGLG+
Sbjct: 2559 RMTKSAHFLPVKTTNTTEDYAKLYVQEI---------------------------KGLGS 2591

Query: 2517 KVNLNTVFHPQTDGHKEQTI*TLEDILRACV 2609
            KVNL+T FHPQTDG  E TI  LED+LRACV
Sbjct: 2592 KVNLSTAFHPQTDGQAEHTIQILEDMLRACV 2622



 Score =  259 bits (663), Expect(3) = e-174
 Identities = 130/211 (61%), Positives = 151/211 (71%)
 Frame = +3

Query: 1977 RGDDGTLRYRSRLCIPYVDGLKEKIMEKIHNSRYSIHPGYTKMYHNLNEIYWLNDMKRNI 2156
            +G DG LRY+ RLC+P VDGL+EKIME+ H+SRYS+HPG TKMY +L E+YW N MK+ I
Sbjct: 3949 QGGDGALRYQGRLCVPMVDGLQEKIMEEAHSSRYSVHPGSTKMYRDLREVYWWNGMKKGI 4008

Query: 2157 EDFIDKCSNCQ*VKAE*QRPGGLAQNINIPV*K*EMINMDFIAGLPRSS*RHDLIWVIVD 2336
             +F+ KC NCQ VK E QRPGGLAQ I +P  K EMINMDFI GLPRS  +HD IWVIVD
Sbjct: 4009 AEFVAKCPNCQQVKVEHQRPGGLAQRIELPEWKWEMINMDFITGLPRSRRQHDSIWVIVD 4068

Query: 2337 RLTKSAHFLPVKTTDSAEDYAKLYIQEIVRLHGTSVSIILDCGAQFTAHFWKSFQKGLGT 2516
            R+TKSAHFLPVKTT++ EDYAKLY+QEI                           KGLG+
Sbjct: 4069 RMTKSAHFLPVKTTNTTEDYAKLYVQEI---------------------------KGLGS 4101

Query: 2517 KVNLNTVFHPQTDGHKEQTI*TLEDILRACV 2609
            KVNL+T FHPQTDG  E TI  LED+LRACV
Sbjct: 4102 KVNLSTAFHPQTDGQAEHTIQILEDMLRACV 4132



 Score =  238 bits (607), Expect(3) = e-174
 Identities = 141/286 (49%), Positives = 179/286 (62%), Gaps = 1/286 (0%)
 Frame = +1

Query: 1126 GEGVKVGFQKIEAVKN*PQTYLNLRDKKFLRSGMLLQALLEGFYSILDSLIRLTQKKVKF 1305
            G+G+KV   KIEAV+N P+       + FL      +  +EGF +I   L +LTQK VK 
Sbjct: 645  GDGIKVDTWKIEAVQNWPRPTSPTEIRSFLGLAGYYRRFVEGFSTIASPLTKLTQKTVKL 704

Query: 1306 QWPDA*EHSFEELKMRLTFFLVLTLSEGTYGFVVYYDALGVGHECIIMQHGKVIAYASRQ 1485
            QW +A E SF+ELK RLT   VLTL EGT GFVV+ DA  VG  C++MQ+ KVIAYASRQ
Sbjct: 705  QWSEACEKSFQELKKRLTTAPVLTLPEGTQGFVVHCDASRVGLGCVLMQNDKVIAYASRQ 764

Query: 1486 LKTYEKNYLTHNLELIVMVFTLKI*RYYLYGVHIDIFIDHKSLQYIFKQRKLNLKQNRRL 1665
            LK +EKNY TH+LEL  +VF LKI R+YLYGVH+DIF DHKSLQY+  Q++LNL+Q R L
Sbjct: 765  LKAHEKNYPTHDLELAAVVFALKIWRHYLYGVHVDIFTDHKSLQYVLTQKELNLRQRRWL 824

Query: 1666 ELKKTMM*MSSIIQEK*ICS*CS*SAID-GNLSPC*RKNRTMTKEIHRLTSLEV*LLDTE 1842
            EL K  +        K      S S +  G+ +      R +TK++HRL  L V   D+ 
Sbjct: 825  ELLKDYVLSILYHPGKANVVADSLSRLSMGSTAHIEEGRRELTKDVHRLACLGVRFTDSA 884

Query: 1843 DGDMFV*NRFESSLVAEVKEK*FNDPYLLQLKEGIHNHKTTTFKQG 1980
             G + V NR ESSLV EVK+K   DP LL+LK  +   +   F+QG
Sbjct: 885  KGGIAVANRAESSLVLEVKKKQDQDPILLELKANVQKQRVLAFEQG 930



 Score =  238 bits (607), Expect(3) = e-174
 Identities = 141/286 (49%), Positives = 179/286 (62%), Gaps = 1/286 (0%)
 Frame = +1

Query: 1126 GEGVKVGFQKIEAVKN*PQTYLNLRDKKFLRSGMLLQALLEGFYSILDSLIRLTQKKVKF 1305
            G+G+KV   KIEAV+N P+       + FL      +  +EGF +I   L +LTQK VK 
Sbjct: 2155 GDGIKVDTWKIEAVQNWPRPTSPTEIRSFLGLAGYYRRFVEGFSTIASPLTKLTQKTVKL 2214

Query: 1306 QWPDA*EHSFEELKMRLTFFLVLTLSEGTYGFVVYYDALGVGHECIIMQHGKVIAYASRQ 1485
            QW +A E SF+ELK RLT   VLTL EGT GFVV+ DA  VG  C++MQ+ KVIAYASRQ
Sbjct: 2215 QWSEACEKSFQELKKRLTTAPVLTLPEGTQGFVVHCDASRVGLGCVLMQNDKVIAYASRQ 2274

Query: 1486 LKTYEKNYLTHNLELIVMVFTLKI*RYYLYGVHIDIFIDHKSLQYIFKQRKLNLKQNRRL 1665
            LK +EKNY TH+LEL  +VF LKI R+YLYGVH+DIF DHKSLQY+  Q++LNL+Q R L
Sbjct: 2275 LKAHEKNYPTHDLELAAVVFALKIWRHYLYGVHVDIFTDHKSLQYVLTQKELNLRQRRWL 2334

Query: 1666 ELKKTMM*MSSIIQEK*ICS*CS*SAID-GNLSPC*RKNRTMTKEIHRLTSLEV*LLDTE 1842
            EL K  +        K      S S +  G+ +      R +TK++HRL  L V   D+ 
Sbjct: 2335 ELLKDYVLSILYHPGKANVVADSLSRLSMGSTAHIEEGRRELTKDVHRLACLGVRFTDSA 2394

Query: 1843 DGDMFV*NRFESSLVAEVKEK*FNDPYLLQLKEGIHNHKTTTFKQG 1980
             G + V NR ESSLV EVK+K   DP LL+LK  +   +   F+QG
Sbjct: 2395 KGGIAVANRAESSLVLEVKKKQDQDPILLELKANVQKQRVLAFEQG 2440



 Score =  238 bits (607), Expect(3) = e-174
 Identities = 141/286 (49%), Positives = 179/286 (62%), Gaps = 1/286 (0%)
 Frame = +1

Query: 1126 GEGVKVGFQKIEAVKN*PQTYLNLRDKKFLRSGMLLQALLEGFYSILDSLIRLTQKKVKF 1305
            G+G+KV   KIEAV+N P+       + FL      +  +EGF +I   L +LTQK VK 
Sbjct: 3665 GDGIKVDTWKIEAVQNWPRPTSPTEIRSFLGLAGYYRRFVEGFSTIASPLTKLTQKTVKL 3724

Query: 1306 QWPDA*EHSFEELKMRLTFFLVLTLSEGTYGFVVYYDALGVGHECIIMQHGKVIAYASRQ 1485
            QW +A E SF+ELK RLT   VLTL EGT GFVV+ DA  VG  C++MQ+ KVIAYASRQ
Sbjct: 3725 QWSEACEKSFQELKKRLTTAPVLTLPEGTQGFVVHCDASRVGLGCVLMQNDKVIAYASRQ 3784

Query: 1486 LKTYEKNYLTHNLELIVMVFTLKI*RYYLYGVHIDIFIDHKSLQYIFKQRKLNLKQNRRL 1665
            LK +EKNY TH+LEL  +VF LKI R+YLYGVH+DIF DHKSLQY+  Q++LNL+Q R L
Sbjct: 3785 LKAHEKNYPTHDLELAAVVFALKIWRHYLYGVHVDIFTDHKSLQYVLTQKELNLRQRRWL 3844

Query: 1666 ELKKTMM*MSSIIQEK*ICS*CS*SAID-GNLSPC*RKNRTMTKEIHRLTSLEV*LLDTE 1842
            EL K  +        K      S S +  G+ +      R +TK++HRL  L V   D+ 
Sbjct: 3845 ELLKDYVLSILYHPGKANVVADSLSRLSMGSTAHIEEGRRELTKDVHRLACLGVRFTDSA 3904

Query: 1843 DGDMFV*NRFESSLVAEVKEK*FNDPYLLQLKEGIHNHKTTTFKQG 1980
             G + V NR ESSLV EVK+K   DP LL+LK  +   +   F+QG
Sbjct: 3905 KGGIAVANRAESSLVLEVKKKQDQDPILLELKANVQKQRVLAFEQG 3950



 Score =  165 bits (418), Expect(3) = e-174
 Identities = 83/131 (63%), Positives = 100/131 (76%)
 Frame = +2

Query: 2612 DFKGNWDDCFTLIEFVYNNSYHTSIKMTPLKALYGQRCRSLIDWFEVGETELLRLDLVYQ 2791
            DFKGNWDD   LIEF YNNSYH SI+M P +ALYG+RCRS I WFEVGE +L+  DLV+Q
Sbjct: 1114 DFKGNWDDHLPLIEFAYNNSYHPSIQMAPYEALYGRRCRSPIGWFEVGEAQLIGPDLVHQ 1173

Query: 2792 VMEKVKLIQEHLKIAWSIQKSYSNVRCTDLEFQVDN*VFMKVLPIKGVMRFEKKGKLSPD 2971
             MEKVK+I+E LK A S QKSY++VR   LEF+VD+ V++KV P+KGVMRF KKGKLSP 
Sbjct: 1174 AMEKVKVIKERLKTAQSRQKSYTDVRRRALEFEVDDWVYLKVSPMKGVMRFGKKGKLSPR 1233

Query: 2972 IFNHTRSYERL 3004
                 R  +R+
Sbjct: 1234 YIGPYRIAKRI 1244



 Score =  165 bits (418), Expect(3) = e-174
 Identities = 83/131 (63%), Positives = 100/131 (76%)
 Frame = +2

Query: 2612 DFKGNWDDCFTLIEFVYNNSYHTSIKMTPLKALYGQRCRSLIDWFEVGETELLRLDLVYQ 2791
            DFKGNWDD   LIEF YNNSYH SI+M P +ALYG+RCRS I WFEVGE +L+  DLV+Q
Sbjct: 2624 DFKGNWDDHLPLIEFAYNNSYHPSIQMAPYEALYGRRCRSPIGWFEVGEAQLIGPDLVHQ 2683

Query: 2792 VMEKVKLIQEHLKIAWSIQKSYSNVRCTDLEFQVDN*VFMKVLPIKGVMRFEKKGKLSPD 2971
             MEKVK+I+E LK A S QKSY++VR   LEF+VD+ V++KV P+KGVMRF KKGKLSP 
Sbjct: 2684 AMEKVKVIKERLKTAQSRQKSYTDVRRRALEFEVDDWVYLKVSPMKGVMRFGKKGKLSPR 2743

Query: 2972 IFNHTRSYERL 3004
                 R  +R+
Sbjct: 2744 YIGPYRIAKRI 2754



 Score =  165 bits (418), Expect(3) = e-174
 Identities = 83/131 (63%), Positives = 100/131 (76%)
 Frame = +2

Query: 2612 DFKGNWDDCFTLIEFVYNNSYHTSIKMTPLKALYGQRCRSLIDWFEVGETELLRLDLVYQ 2791
            DFKGNWDD   LIEF YNNSYH SI+M P +ALYG+RCRS I WFEVGE +L+  DLV+Q
Sbjct: 4134 DFKGNWDDHLPLIEFAYNNSYHPSIQMAPYEALYGRRCRSPIGWFEVGEAQLIGPDLVHQ 4193

Query: 2792 VMEKVKLIQEHLKIAWSIQKSYSNVRCTDLEFQVDN*VFMKVLPIKGVMRFEKKGKLSPD 2971
             MEKVK+I+E LK A S QKSY++VR   LEF+VD+ V++KV P+KGVMRF KKGKLSP 
Sbjct: 4194 AMEKVKVIKERLKTAQSRQKSYTDVRRRALEFEVDDWVYLKVSPMKGVMRFGKKGKLSPR 4253

Query: 2972 IFNHTRSYERL 3004
                 R  +R+
Sbjct: 4254 YIGPYRIAKRI 4264



 Score =  176 bits (445), Expect = 7e-41
 Identities = 97/190 (51%), Positives = 127/190 (66%)
 Frame = +2

Query: 674  DYHQLNKVTIKNKYSLSRIDDLFEQLQGV*CYSKINIILGYHQFKVKRVDILKIAFKTRY 853
            DY QLNKVTIKNKY L RIDDLF+QLQG  C+SKI++  GYHQ +V+  DI K AF+TRY
Sbjct: 495  DYRQLNKVTIKNKYPLPRIDDLFDQLQGATCFSKIDLRSGYHQLRVRECDIPKTAFRTRY 554

Query: 854  RHFEFCVISFGLTNAPAVFY*SYEQDLQALL*SFDYCVY**YSNLFS**G*SYRTSQNSI 1033
             H+EF V+SFGLTNAPA F     +  +  L  F   V+     ++S     + +   ++
Sbjct: 555  GHYEFLVMSFGLTNAPAAFMDLMNRVFKPYLDMF-VIVFIDDILIYSRNEGDHASHLRTV 613

Query: 1034 ANTVQDLKLYAKNFKCEFWLKSMAFLGHLILEKA*RLVFRKLRQ*RISPRPTSISEIRNF 1213
              T++D +LYAK  KCEFWLKS+AFLGH++     ++   K+   +  PRPTS +EIR+F
Sbjct: 614  LQTLKDKELYAKFSKCEFWLKSVAFLGHIVSGDGIKVDTWKIEAVQNWPRPTSPTEIRSF 673

Query: 1214 LGLACYYRRF 1243
            LGLA YYRRF
Sbjct: 674  LGLAGYYRRF 683



 Score =  176 bits (445), Expect = 7e-41
 Identities = 97/190 (51%), Positives = 127/190 (66%)
 Frame = +2

Query: 674  DYHQLNKVTIKNKYSLSRIDDLFEQLQGV*CYSKINIILGYHQFKVKRVDILKIAFKTRY 853
            DY QLNKVTIKNKY L RIDDLF+QLQG  C+SKI++  GYHQ +V+  DI K AF+TRY
Sbjct: 2005 DYRQLNKVTIKNKYPLPRIDDLFDQLQGATCFSKIDLRSGYHQLRVRECDIPKTAFRTRY 2064

Query: 854  RHFEFCVISFGLTNAPAVFY*SYEQDLQALL*SFDYCVY**YSNLFS**G*SYRTSQNSI 1033
             H+EF V+SFGLTNAPA F     +  +  L  F   V+     ++S     + +   ++
Sbjct: 2065 GHYEFLVMSFGLTNAPAAFMDLMNRVFKPYLDMF-VIVFIDDILIYSRNEGDHASHLRTV 2123

Query: 1034 ANTVQDLKLYAKNFKCEFWLKSMAFLGHLILEKA*RLVFRKLRQ*RISPRPTSISEIRNF 1213
              T++D +LYAK  KCEFWLKS+AFLGH++     ++   K+   +  PRPTS +EIR+F
Sbjct: 2124 LQTLKDKELYAKFSKCEFWLKSVAFLGHIVSGDGIKVDTWKIEAVQNWPRPTSPTEIRSF 2183

Query: 1214 LGLACYYRRF 1243
            LGLA YYRRF
Sbjct: 2184 LGLAGYYRRF 2193



 Score =  176 bits (445), Expect = 7e-41
 Identities = 97/190 (51%), Positives = 127/190 (66%)
 Frame = +2

Query: 674  DYHQLNKVTIKNKYSLSRIDDLFEQLQGV*CYSKINIILGYHQFKVKRVDILKIAFKTRY 853
            DY QLNKVTIKNKY L RIDDLF+QLQG  C+SKI++  GYHQ +V+  DI K AF+TRY
Sbjct: 3515 DYRQLNKVTIKNKYPLPRIDDLFDQLQGATCFSKIDLRSGYHQLRVRECDIPKTAFRTRY 3574

Query: 854  RHFEFCVISFGLTNAPAVFY*SYEQDLQALL*SFDYCVY**YSNLFS**G*SYRTSQNSI 1033
             H+EF V+SFGLTNAPA F     +  +  L  F   V+     ++S     + +   ++
Sbjct: 3575 GHYEFLVMSFGLTNAPAAFMDLMNRVFKPYLDMF-VIVFIDDILIYSRNEGDHASHLRTV 3633

Query: 1034 ANTVQDLKLYAKNFKCEFWLKSMAFLGHLILEKA*RLVFRKLRQ*RISPRPTSISEIRNF 1213
              T++D +LYAK  KCEFWLKS+AFLGH++     ++   K+   +  PRPTS +EIR+F
Sbjct: 3634 LQTLKDKELYAKFSKCEFWLKSVAFLGHIVSGDGIKVDTWKIEAVQNWPRPTSPTEIRSF 3693

Query: 1214 LGLACYYRRF 1243
            LGLA YYRRF
Sbjct: 3694 LGLAGYYRRF 3703



 Score = 62.4 bits (150), Expect(2) = 4e-15
 Identities = 26/52 (50%), Positives = 39/52 (75%)
 Frame = +2

Query: 116 VYHRIIITNLVELEMVDFDIIMNMDWLSSYYVSLGCRTKIVSFEFPSKPIIE 271
           + H+    +LVEL+MV+FD+I+ MDWL + Y SL CRT+ V F+F ++P+IE
Sbjct: 434 ISHKSTKADLVELDMVNFDVILGMDWLHACYASLDCRTRAVKFQFLNEPVIE 485



 Score = 62.4 bits (150), Expect(2) = 4e-15
 Identities = 26/52 (50%), Positives = 39/52 (75%)
 Frame = +2

Query: 116  VYHRIIITNLVELEMVDFDIIMNMDWLSSYYVSLGCRTKIVSFEFPSKPIIE 271
            + H+    +LVEL+MV+FD+I+ MDWL + Y SL CRT+ V F+F ++P+IE
Sbjct: 1944 ISHKSTKADLVELDMVNFDVILGMDWLHACYASLDCRTRAVKFQFLNEPVIE 1995



 Score = 62.4 bits (150), Expect(2) = 4e-15
 Identities = 26/52 (50%), Positives = 39/52 (75%)
 Frame = +2

Query: 116  VYHRIIITNLVELEMVDFDIIMNMDWLSSYYVSLGCRTKIVSFEFPSKPIIE 271
            + H+    +LVEL+MV+FD+I+ MDWL + Y SL CRT+ V F+F ++P+IE
Sbjct: 3454 ISHKSTKADLVELDMVNFDVILGMDWLHACYASLDCRTRAVKFQFLNEPVIE 3505



 Score = 48.5 bits (114), Expect(2) = 4e-15
 Identities = 22/37 (59%), Positives = 27/37 (72%)
 Frame = +3

Query: 3   VAKKFRIEQERLHKPFEVFTPVGESVIVRRVYRSCPV 113
           VA +F +  ERL +PF V TPVGES++  RVYR CPV
Sbjct: 396 VANQFEVLPERLCEPFCVSTPVGESILAERVYRDCPV 432



 Score = 48.5 bits (114), Expect(2) = 4e-15
 Identities = 22/37 (59%), Positives = 27/37 (72%)
 Frame = +3

Query: 3    VAKKFRIEQERLHKPFEVFTPVGESVIVRRVYRSCPV 113
            VA +F +  ERL +PF V TPVGES++  RVYR CPV
Sbjct: 1906 VANQFEVLPERLCEPFCVSTPVGESILAERVYRDCPV 1942



 Score = 48.5 bits (114), Expect(2) = 4e-15
 Identities = 22/37 (59%), Positives = 27/37 (72%)
 Frame = +3

Query: 3    VAKKFRIEQERLHKPFEVFTPVGESVIVRRVYRSCPV 113
            VA +F +  ERL +PF V TPVGES++  RVYR CPV
Sbjct: 3416 VANQFEVLPERLCEPFCVSTPVGESILAERVYRDCPV 3452



 Score = 63.2 bits (152), Expect = 7e-07
 Identities = 29/55 (52%), Positives = 38/55 (69%)
 Frame = +1

Query: 2926 KGCDEI*KERKTQSRYI*PYKILRKIDQVSYELELPQDLIIVHLVFHVSMFRKCV 3090
            KG     K+ K   RYI PY+I ++I  V+YELELPQ+L  VH VFH+SM +KC+
Sbjct: 1219 KGVMRFGKKGKLSPRYIGPYRIAKRIGNVAYELELPQELAAVHPVFHISMLKKCI 1273



 Score = 63.2 bits (152), Expect = 7e-07
 Identities = 29/55 (52%), Positives = 38/55 (69%)
 Frame = +1

Query: 2926 KGCDEI*KERKTQSRYI*PYKILRKIDQVSYELELPQDLIIVHLVFHVSMFRKCV 3090
            KG     K+ K   RYI PY+I ++I  V+YELELPQ+L  VH VFH+SM +KC+
Sbjct: 2729 KGVMRFGKKGKLSPRYIGPYRIAKRIGNVAYELELPQELAAVHPVFHISMLKKCI 2783



 Score = 63.2 bits (152), Expect = 7e-07
 Identities = 29/55 (52%), Positives = 38/55 (69%)
 Frame = +1

Query: 2926 KGCDEI*KERKTQSRYI*PYKILRKIDQVSYELELPQDLIIVHLVFHVSMFRKCV 3090
            KG     K+ K   RYI PY+I ++I  V+YELELPQ+L  VH VFH+SM +KC+
Sbjct: 4239 KGVMRFGKKGKLSPRYIGPYRIAKRIGNVAYELELPQELAAVHPVFHISMLKKCI 4293


>gb|AAV31171.1| Putative polyprotein, identical [Solanum tuberosum]
          Length = 1487

 Score =  295 bits (755), Expect(3) = e-168
 Identities = 145/211 (68%), Positives = 169/211 (80%)
 Frame = +3

Query: 1977 RGDDGTLRYRSRLCIPYVDGLKEKIMEKIHNSRYSIHPGYTKMYHNLNEIYWLNDMKRNI 2156
            +G DG LRY+ RLC+P VDGL+++IME+ H+SRYSIHPG+TKMY +L E+YW N MK+ I
Sbjct: 1038 QGGDGVLRYQGRLCVPMVDGLQKRIMEEAHSSRYSIHPGFTKMYRDLREVYWWNGMKKGI 1097

Query: 2157 EDFIDKCSNCQ*VKAE*QRPGGLAQNINIPV*K*EMINMDFIAGLPRSS*RHDLIWVIVD 2336
             +F+ KC NCQ VK E QR GGLAQ I +   K EMINMDFI GLPRS  +HD IWVIVD
Sbjct: 1098 AEFVAKCPNCQQVKVEHQRLGGLAQRIELLELKWEMINMDFITGLPRSRRQHDSIWVIVD 1157

Query: 2337 RLTKSAHFLPVKTTDSAEDYAKLYIQEIVRLHGTSVSIILDCGAQFTAHFWKSFQKGLGT 2516
            R+TKSAHFLPVKTT+SAEDYAKLYIQE+VRLHG  +SII + GAQ    FWK FQKGLG 
Sbjct: 1158 RMTKSAHFLPVKTTNSAEDYAKLYIQEVVRLHGVPISIISNRGAQ----FWKFFQKGLGL 1213

Query: 2517 KVNLNTVFHPQTDGHKEQTI*TLEDILRACV 2609
             VNL+T FHPQTDG  E+TI TLED+LRACV
Sbjct: 1214 NVNLSTAFHPQTDGQAERTIQTLEDMLRACV 1244



 Score =  185 bits (470), Expect(3) = e-168
 Identities = 118/257 (45%), Positives = 150/257 (58%), Gaps = 1/257 (0%)
 Frame = +1

Query: 1126 GEGVKVGFQKIEAVKN*PQTYLNLRDKKFLRSGMLLQALLEGFYSILDSLIRLTQKKVKF 1305
            G+G+KV  +KIEAVKN P++      + FL      +  +EGF SI   L +LTQK VKF
Sbjct: 786  GDGIKVDTRKIEAVKNCPRSISPTEIRSFLGLVGYYRRFVEGFSSIASPLTKLTQKTVKF 845

Query: 1306 QWPDA*EHSFEELKMRLTFFLVLTLSEGTYGFVVYYDALGVGHECIIMQHGKVIAYASRQ 1485
            QW +A E SF+ELK RL    VLTL EGT  FVVY DA  +G                  
Sbjct: 846  QWSEACEKSFQELKKRLISTPVLTLPEGTQSFVVYCDASRIG-----------------L 888

Query: 1486 LKTYEKNYLTHNLELIVMVFTLKI*RYYLYGVHIDIFIDHKSLQYIFKQRKLNLKQNRRL 1665
            LK +EKNY TH+LEL V+VF LKI R+YLYGVH+D+F DHKSLQY+  Q++LNL+Q R L
Sbjct: 889  LKVHEKNYPTHDLELAVVVFVLKIWRHYLYGVHVDVFTDHKSLQYVLTQKELNLRQRRWL 948

Query: 1666 ELKKTMM*MSSIIQEK*ICS*CS*SAID-GNLSPC*RKNRTMTKEIHRLTSLEV*LLDTE 1842
            EL K           K      S S +  GN +    + R + K++HRL  L V L+D+ 
Sbjct: 949  ELLKDYDLSILYHPGKANVVADSLSRLSMGNTTHIEEEKRELAKDVHRLACLGVRLIDSA 1008

Query: 1843 DGDMFV*NRFESSLVAE 1893
             G + V N  ESSLV+E
Sbjct: 1009 KGGISVTNEAESSLVSE 1025



 Score =  163 bits (413), Expect(3) = e-168
 Identities = 83/131 (63%), Positives = 99/131 (75%)
 Frame = +2

Query: 2612 DFKGNWDDCFTLIEFVYNNSYHTSIKMTPLKALYGQRCRSLIDWFEVGETELLRLDLVYQ 2791
            DFKGNWDD   LIEF YNNSYH+SI+M P +ALYG+RCRS I WFEVGE  L+  +LV+Q
Sbjct: 1246 DFKGNWDDHLPLIEFAYNNSYHSSIQMAPYEALYGRRCRSPIGWFEVGEAGLIGPNLVHQ 1305

Query: 2792 VMEKVKLIQEHLKIAWSIQKSYSNVRCTDLEFQVDN*VFMKVLPIKGVMRFEKKGKLSPD 2971
             MEKVK+IQE LK A S QKSY++VR   LEF+VDN V++KV P+KGVMR  KKGKLSP 
Sbjct: 1306 AMEKVKVIQERLKTAQSRQKSYTDVRRRALEFEVDNWVYLKVSPMKGVMRVGKKGKLSPR 1365

Query: 2972 IFNHTRSYERL 3004
                 R  +R+
Sbjct: 1366 YIGPYRIAKRI 1376



 Score =  305 bits (781), Expect(2) = 7e-87
 Identities = 172/376 (45%), Positives = 231/376 (61%)
 Frame = +2

Query: 116  VYHRIIITNLVELEMVDFDIIMNMDWLSSYYVSLGCRTKIVSFEFPSKPIIE*KDDAVSL 295
            + H+  + +LV+L+MVDFD+I  MDWL + Y SL CRT++V F+FP++P+IE    +V  
Sbjct: 477  INHKSTMADLVDLDMVDFDVISGMDWLHACYTSLDCRTRVVKFQFPNEPVIEWSSSSVVP 536

Query: 296  IGRFVSYLKVRKMISKEYIYYLVLVRDTDTQTPTF*SMPIVSEFLEVFSKDLPKVLSDRE 475
             G F+SYLK RK++SK  +Y+LV V D+  + P F S+PIV EF EVF  DLP + S+RE
Sbjct: 537  KGCFISYLKARKLVSKGCVYHLVRVHDSSVKMPPFQSVPIVREFPEVFPDDLPGIPSERE 596

Query: 476  IKFRLDLLSDTKTIPISPYRMALIELKELKSVKISL**EIY*AKCLTLGCTVLFVRKKYG 655
            I+F + L+ DT+ I I PYRMA  ELKELK     L                        
Sbjct: 597  IEFGIGLIPDTRPISIPPYRMAPAELKELKEQLKDL------------------------ 632

Query: 656  SIHMYIDYHQLNKVTIKNKYSLSRIDDLFEQLQGV*CYSKINIILGYHQFKVKRVDILKI 835
               +  DY QLNKVTIKNKY LSRIDDLF+QLQG  C+SKI++  GYHQ +V+  DI KI
Sbjct: 633  ---LDKDYRQLNKVTIKNKYPLSRIDDLFDQLQGATCFSKIDLRSGYHQLRVRGCDIPKI 689

Query: 836  AFKTRYRHFEFCVISFGLTNAPAVFY*SYEQDLQALL*SFDYCVY**YSNLFS**G*SYR 1015
             F+  Y H+EF V+SFG TNAPA F     +  +  L  F   V+     ++S     + 
Sbjct: 690  TFRIIYGHYEFLVMSFGFTNAPAAFMDLMNRVFKPYLDMF-VIVFIDDILIYSRNKEDHA 748

Query: 1016 TSQNSIANTVQDLKLYAKNFKCEFWLKSMAFLGHLILEKA*RLVFRKLRQ*RISPRPTSI 1195
            +    +  T++D +LYAK  KCEFWLKS+AFLGH++     ++  RK+   +  PR  S 
Sbjct: 749  SHLRIVLQTLKDKELYAKFSKCEFWLKSVAFLGHIVSGDGIKVDTRKIEAVKNCPRSISP 808

Query: 1196 SEIRNFLGLACYYRRF 1243
            +EIR+FLGL  YYRRF
Sbjct: 809  TEIRSFLGLVGYYRRF 824



 Score = 45.8 bits (107), Expect(2) = 7e-87
 Identities = 22/37 (59%), Positives = 26/37 (70%)
 Frame = +3

Query: 3   VAKKFRIEQERLHKPFEVFTPVGESVIVRRVYRSCPV 113
           VA KF +  ERL +PF V TPVGES++  RVY  CPV
Sbjct: 439 VANKFDVLLERLCEPFCVSTPVGESILAERVYCDCPV 475


>ref|XP_006364939.1| PREDICTED: uncharacterized protein LOC102581051 [Solanum tuberosum]
          Length = 1946

 Score =  291 bits (745), Expect(3) = e-166
 Identities = 139/216 (64%), Positives = 168/216 (77%)
 Frame = +3

Query: 1974 TRGDDGTLRYRSRLCIPYVDGLKEKIMEKIHNSRYSIHPGYTKMYHNLNEIYWLNDMKRN 2153
            ++G DG LRY+ RLC+P VDGL+EKI+E+ HNS YSIHPG TKMY +L ++YW   MK++
Sbjct: 1497 SQGGDGALRYQGRLCVPCVDGLREKILEEAHNSSYSIHPGSTKMYRDLRDVYWWGGMKKD 1556

Query: 2154 IEDFIDKCSNCQ*VKAE*QRPGGLAQNINIPV*K*EMINMDFIAGLPRSS*RHDLIWVIV 2333
            I  F+  C +CQ VKAE QRPGGL Q+I IP  K E INMDF+ GLP++      IWV+V
Sbjct: 1557 IAKFVSGCHSCQQVKAEHQRPGGLTQDIEIPTWKWEEINMDFVVGLPKTRKGFGSIWVVV 1616

Query: 2334 DRLTKSAHFLPVKTTDSAEDYAKLYIQEIVRLHGTSVSIILDCGAQFTAHFWKSFQKGLG 2513
            DR+TKSAHFLPVKTT  AEDYA+LYI ++VRLHG  +SII D G QFT+HFWKSFQ+GLG
Sbjct: 1617 DRMTKSAHFLPVKTTYGAEDYARLYIHDLVRLHGIPLSIISDRGTQFTSHFWKSFQRGLG 1676

Query: 2514 TKVNLNTVFHPQTDGHKEQTI*TLEDILRACVQILK 2621
            T+V L T FHPQTDG  E+TI TLED+LRACV  LK
Sbjct: 1677 TRVKLTTAFHPQTDGQAERTIQTLEDMLRACVLELK 1712



 Score =  206 bits (525), Expect(3) = e-166
 Identities = 126/286 (44%), Positives = 170/286 (59%), Gaps = 1/286 (0%)
 Frame = +1

Query: 1126 GEGVKVGFQKIEAVKN*PQTYLNLRDKKFLRSGMLLQALLEGFYSILDSLIRLTQKKVKF 1305
            G G+KV  +K + ++N P+       + FL      +  + GF SI   + +LTQKK KF
Sbjct: 1214 GGGIKVDPKKTDVIRNWPRPLTPSDIRSFLGLAGYYRRFVNGFSSIASPMTKLTQKKAKF 1273

Query: 1306 QWPDA*EHSFEELKMRLTFFLVLTLSEGTYGFVVYYDALGVGHECIIMQHGKVIAYASRQ 1485
            +W D  E SF+ LK +L    +L+L +G  GFVVY DA  VG  C++MQ+GKVIAYASRQ
Sbjct: 1274 EWTDECERSFQTLKDKLVSAPILSLPDGLEGFVVYCDASRVGLGCVLMQNGKVIAYASRQ 1333

Query: 1486 LKTYEKNYLTHNLELIVMVFTLKI*RYYLYGVHIDIFIDHKSLQYIFKQRKLNLKQNRRL 1665
            LK +EKNY TH+LEL  +VF LKI R+YLYGVH+D+F DHKSLQY+F Q+ LNL+Q R L
Sbjct: 1334 LKVHEKNYPTHDLELAAVVFALKIWRHYLYGVHVDVFTDHKSLQYVFTQKDLNLRQRRWL 1393

Query: 1666 E-LKKTMM*MSSIIQEK*ICS*CS*SAIDGNLSPC*RKNRTMTKEIHRLTSLEV*LLDTE 1842
            E LK   M +     +  + +        G+L+     +R M +E+HRL  L V L +  
Sbjct: 1394 EFLKDYDMSVHYHPGKANVVADALSRVSMGSLAHVDIGDREMAREVHRLARLGVRLEEVG 1453

Query: 1843 DGDMFV*NRFESSLVAEVKEK*FNDPYLLQLKEGIHNHKTTTFKQG 1980
            +G + V +   SSLV EV  K   D  LL+LK  +   K   F QG
Sbjct: 1454 NGGVVVVDGARSSLVDEVIAKQDLDSSLLELKALVKEGKVEVFSQG 1499



 Score =  140 bits (352), Expect(3) = e-166
 Identities = 69/119 (57%), Positives = 92/119 (77%)
 Frame = +2

Query: 2612 DFKGNWDDCFTLIEFVYNNSYHTSIKMTPLKALYGQRCRSLIDWFEVGETELLRLDLVYQ 2791
            + KG+W+D   LIEF YNNSYH+SI M P +ALYG+RCRS +  FEVGE  LL  DLV +
Sbjct: 1710 ELKGSWEDHLPLIEFSYNNSYHSSIGMAPFEALYGRRCRSSVGLFEVGEVALLGPDLVME 1769

Query: 2792 VMEKVKLIQEHLKIAWSIQKSYSNVRCTDLEFQVDN*VFMKVLPIKGVMRFEKKGKLSP 2968
             +E+V++I+E LK+A S +KSY++VR   LEF+V + V++KV P+KGV+RF KKGKLSP
Sbjct: 1770 ALEEVRMIRERLKMAQSRRKSYADVRRRALEFRVGDWVYLKVSPMKGVVRFGKKGKLSP 1828



 Score =  277 bits (709), Expect = 2e-71
 Identities = 164/341 (48%), Positives = 219/341 (64%), Gaps = 1/341 (0%)
 Frame = +2

Query: 224  RTKIVSFEFPSKPIIE*KDDAVSLIGRFVSYLKVRKMISKEYIYYLVLVRDTDTQTPTF* 403
            RT+ V F+FPS+PI E +   V + GRF+S +K  K+ISK  +Y+ V VRD +++T    
Sbjct: 913  RTRRVKFQFPSEPIFEWESQNVVVKGRFISCIKAHKLISKGCLYHFVRVRDVESKTLLIE 972

Query: 404  SMPIVSEFLEVFSKDLPKVLSDREIKFRLDLLSDTKTIPISPYRMALIELKELKS-VKIS 580
            S+P+V+EFL+VF  DLP V  +REI F +DLL DT+ I I PYR+A  ELKELK  +K  
Sbjct: 973  SVPVVNEFLDVFPNDLPGVPLEREIDFGIDLLPDTQPIFIPPYRIAPAELKELKEQLKDL 1032

Query: 581  L**EIY*AKCLTLGCTVLFVRKKYGSIHMYIDYHQLNKVTIKNKYSLSRIDDLFEQLQGV 760
            L            G  VLFV+KK GS+ M IDY QLN+VT+KNKY L RIDDLF+QLQG 
Sbjct: 1033 LEKGFIRPSQSPWGAPVLFVKKKDGSLRMCIDYRQLNRVTVKNKYPLPRIDDLFDQLQGA 1092

Query: 761  *CYSKINIILGYHQFKVKRVDILKIAFKTRYRHFEFCVISFGLTNAPAVFY*SYEQDLQA 940
              +SKI++  GYHQ KV+  DI K AF+TRY H+EF V+SFGLTNAPA+F     +  + 
Sbjct: 1093 SHFSKIDLRSGYHQVKVRECDIPKTAFRTRYGHYEFVVMSFGLTNAPAIFMDLMNRVFKP 1152

Query: 941  LL*SFDYCVY**YSNLFS**G*SYRTSQNSIANTVQDLKLYAKNFKCEFWLKSMAFLGHL 1120
             L SF   V+     ++S     +      +   +++ KLYAK  KCEFWL+ +AFLGH+
Sbjct: 1153 YLDSF-VVVFIDDILIYSHSEEEHMGHLRVVLQRLREEKLYAKYEKCEFWLREVAFLGHV 1211

Query: 1121 ILEKA*RLVFRKLRQ*RISPRPTSISEIRNFLGLACYYRRF 1243
            +     ++  +K    R  PRP + S+IR+FLGLA YYRRF
Sbjct: 1212 VSGGGIKVDPKKTDVIRNWPRPLTPSDIRSFLGLAGYYRRF 1252



 Score = 65.9 bits (159), Expect = 1e-07
 Identities = 30/55 (54%), Positives = 40/55 (72%)
 Frame = +1

Query: 2926 KGCDEI*KERKTQSRYI*PYKILRKIDQVSYELELPQDLIIVHLVFHVSMFRKCV 3090
            KG     K+ K   RY+ PYK++R+I +V+YELELP ++ +VH VFHVSM RKCV
Sbjct: 1815 KGVVRFGKKGKLSPRYVGPYKVMRRIGKVAYELELPSEMDLVHPVFHVSMLRKCV 1869


>gb|AAT39297.2| Gag-pol protein, putative [Solanum demissum]
          Length = 1554

 Score =  310 bits (794), Expect(3) = e-163
 Identities = 148/211 (70%), Positives = 175/211 (82%)
 Frame = +3

Query: 1977 RGDDGTLRYRSRLCIPYVDGLKEKIMEKIHNSRYSIHPGYTKMYHNLNEIYWLNDMKRNI 2156
            +G DG LRY+ RLC+P VDGL+E+IME+ H+SRYSIHPG TKMYH+L E+YW N MK+ I
Sbjct: 1153 QGGDGVLRYQGRLCVPMVDGLQERIMEEAHSSRYSIHPGSTKMYHDLREVYWWNGMKKGI 1212

Query: 2157 EDFIDKCSNCQ*VKAE*QRPGGLAQNINIPV*K*EMINMDFIAGLPRSS*RHDLIWVIVD 2336
             +F+ KC NCQ VK E QRP GLAQ I +P  K EMINMDFI GLP+S  +HD IWVIVD
Sbjct: 1213 AEFVAKCPNCQQVKVEHQRPVGLAQRIKLPEWKWEMINMDFITGLPKSHRQHDSIWVIVD 1272

Query: 2337 RLTKSAHFLPVKTTDSAEDYAKLYIQEIVRLHGTSVSIILDCGAQFTAHFWKSFQKGLGT 2516
            ++TKSAHFLPV+TT+ AEDYAKLY+QEIVRLHG  +SII D GAQFTA FWKSF+KGLG+
Sbjct: 1273 QMTKSAHFLPVRTTNIAEDYAKLYVQEIVRLHGIPISIISDRGAQFTAQFWKSFKKGLGS 1332

Query: 2517 KVNLNTVFHPQTDGHKEQTI*TLEDILRACV 2609
            KVNL+T F+PQTDG  E+TI TLED+LRACV
Sbjct: 1333 KVNLSTAFYPQTDGQAERTIHTLEDMLRACV 1363



 Score =  164 bits (415), Expect(3) = e-163
 Identities = 83/131 (63%), Positives = 98/131 (74%)
 Frame = +2

Query: 2612 DFKGNWDDCFTLIEFVYNNSYHTSIKMTPLKALYGQRCRSLIDWFEVGETELLRLDLVYQ 2791
            DFKGNWDD   LIEF YNNSYH+SI M P +ALYG+RC S I WFEVGE +L+  DLV+Q
Sbjct: 1365 DFKGNWDDHLPLIEFAYNNSYHSSIHMAPYEALYGRRCISPIGWFEVGEAQLIGPDLVHQ 1424

Query: 2792 VMEKVKLIQEHLKIAWSIQKSYSNVRCTDLEFQVDN*VFMKVLPIKGVMRFEKKGKLSPD 2971
             MEKVK+IQE LK A S QKSY +VR   LEF+VD+ V++KV P+KGVMRF KKGKLSP 
Sbjct: 1425 AMEKVKVIQERLKTAQSRQKSYIDVRTRALEFEVDDWVYLKVSPMKGVMRFGKKGKLSPQ 1484

Query: 2972 IFNHTRSYERL 3004
                 R  +R+
Sbjct: 1485 YIGPYRIAKRI 1495



 Score =  151 bits (382), Expect(3) = e-163
 Identities = 107/285 (37%), Positives = 135/285 (47%)
 Frame = +1

Query: 1126 GEGVKVGFQKIEAVKN*PQTYLNLRDKKFLRSGMLLQALLEGFYSILDSLIRLTQKKVKF 1305
            G+G+KV   KIEA++N P+       + FL      +  +EGF SI   L +LTQK VKF
Sbjct: 948  GDGIKVDTGKIEAMQNWPRPTSPTEIRSFLGLAGYYRRFVEGFSSIASPLTKLTQKTVKF 1007

Query: 1306 QWPDA*EHSFEELKMRLTFFLVLTLSEGTYGFVVYYDALGVGHECIIMQHGKVIAYASRQ 1485
            +W +A E SF+E K RL    VLTL EGT GFVVY DA  VG  C++MQ+G         
Sbjct: 1008 RWSEACEKSFQEFKKRLITAPVLTLPEGTQGFVVYCDASRVGLGCVLMQNG--------- 1058

Query: 1486 LKTYEKNYLTHNLELIVMVFTLKI*RYYLYGVHIDIFIDHKSLQYIFKQRKLNLKQNRRL 1665
                                  KI R++LYGVH+DIF DHKSLQY+  Q++LNL+Q R L
Sbjct: 1059 ----------------------KIWRHHLYGVHVDIFTDHKSLQYVLTQKELNLRQRRWL 1096

Query: 1666 ELKKTMM*MSSIIQEK*ICS*CS*SAIDGNLSPC*RKNRTMTKEIHRLTSLEV*LLDTED 1845
            EL K                       D NLS   R                        
Sbjct: 1097 ELLK-----------------------DYNLSILYRPG---------------------- 1111

Query: 1846 GDMFV*NRFESSLVAEVKEK*FNDPYLLQLKEGIHNHKTTTFKQG 1980
              + V NR ESSLV+EVKEK   DP  L+ K  +   +   F+QG
Sbjct: 1112 --IAVANRAESSLVSEVKEKQDQDPIFLEFKANVQKQRVLAFEQG 1154



 Score =  340 bits (872), Expect(2) = 6e-98
 Identities = 189/377 (50%), Positives = 248/377 (65%), Gaps = 1/377 (0%)
 Frame = +2

Query: 116  VYHRIIITNLVELEMVDFDIIMNMDWLSSYYVSLGCRTKIVSFEFPSKPIIE*KDDAVSL 295
            + H+  + +LVEL+MVDFD+I+ M+WL + Y SL CRT++V F+FP++P+ E    +   
Sbjct: 611  INHKSTMADLVELDMVDFDVILGMNWLHACYASLDCRTRVVKFQFPNEPVFEWSSSSAVP 670

Query: 296  IGRFVSYLKVRKMISKEYIYYLVLVRDTDTQTPTF*SMPIVSEFLEVFSKDLPKVLSDRE 475
             GRF+SYLK RK++SK  IY+LV V D+  + P F S+PIV EF +VF  DLP +  +RE
Sbjct: 671  KGRFISYLKARKLVSKGCIYHLVRVHDSSVEIPHFQSVPIVREFPKVFPDDLPGIPPERE 730

Query: 476  IKFRLDLLSDTKTIPISPYRMALIELKELK-SVKISL**EIY*AKCLTLGCTVLFVRKKY 652
            I F +DL+ DT  I I PYRMA  ELKELK  +K  L            G  VLFVRKK 
Sbjct: 731  IDFGIDLIPDTHPISIPPYRMAPSELKELKEQLKDLLDKGFIRPSVSPWGAPVLFVRKKD 790

Query: 653  GSIHMYIDYHQLNKVTIKNKYSLSRIDDLFEQLQGV*CYSKINIILGYHQFKVKRVDILK 832
            GS+ M IDY QLNKVTIKNKY L RIDDLF QLQG  C+SKI++  GYHQ +V+  DI K
Sbjct: 791  GSLRMCIDYRQLNKVTIKNKYPLPRIDDLFNQLQGATCFSKIDLRSGYHQLRVRECDIPK 850

Query: 833  IAFKTRYRHFEFCVISFGLTNAPAVFY*SYEQDLQALL*SFDYCVY**YSNLFS**G*SY 1012
             AF+TRY H+EF V+SFGLTNAPA F     +  +  L +F   V+     ++S     +
Sbjct: 851  TAFRTRYGHYEFLVMSFGLTNAPAAFMDLMNRVFKPYLDTF-VIVFIDDILVYSRNEEDH 909

Query: 1013 RTSQNSIANTVQDLKLYAKNFKCEFWLKSMAFLGHLILEKA*RLVFRKLRQ*RISPRPTS 1192
             +   ++  T++D KLYAK  KCEFWLKS+AFLGH++     ++   K+   +  PRPTS
Sbjct: 910  ASHLRTVLQTLKDNKLYAKFSKCEFWLKSVAFLGHIVSGDGIKVDTGKIEAMQNWPRPTS 969

Query: 1193 ISEIRNFLGLACYYRRF 1243
             +EIR+FLGLA YYRRF
Sbjct: 970  PTEIRSFLGLAGYYRRF 986



 Score = 47.8 bits (112), Expect(2) = 6e-98
 Identities = 22/36 (61%), Positives = 26/36 (72%)
 Frame = +3

Query: 3   VAKKFRIEQERLHKPFEVFTPVGESVIVRRVYRSCP 110
           VA KF +  ERL +PF V TPVGES++  RVYR CP
Sbjct: 573 VANKFDVLPERLCEPFCVSTPVGESILAERVYRDCP 608



 Score = 60.8 bits (146), Expect = 3e-06
 Identities = 28/55 (50%), Positives = 38/55 (69%)
 Frame = +1

Query: 2926 KGCDEI*KERKTQSRYI*PYKILRKIDQVSYELELPQDLIIVHLVFHVSMFRKCV 3090
            KG     K+ K   +YI PY+I ++I  V+YELELPQ+L  VH VFH+SM +KC+
Sbjct: 1470 KGVMRFGKKGKLSPQYIGPYRIAKRIGNVAYELELPQELEAVHPVFHISMLKKCI 1524


>gb|EOY19264.1| Uncharacterized protein TCM_044274 [Theobroma cacao]
          Length = 860

 Score =  257 bits (657), Expect(4) = e-140
 Identities = 121/212 (57%), Positives = 157/212 (74%)
 Frame = +3

Query: 1974 TRGDDGTLRYRSRLCIPYVDGLKEKIMEKIHNSRYSIHPGYTKMYHNLNEIYWLNDMKRN 2153
            T+G DG LRY +RL +P  DGL+ +I+E+ H + Y +HPG TKMY +L E+YW   +KR+
Sbjct: 445  TKGTDGVLRYGTRLYVPDGDGLRREILEEAHMAAYVVHPGATKMYQDLKEVYWWEGLKRD 504

Query: 2154 IEDFIDKCSNCQ*VKAE*QRPGGLAQNINIPV*K*EMINMDFIAGLPRSS*RHDLIWVIV 2333
            + +F+ KC  CQ VKAE Q+P GL Q + +P  K E I MDF+ GLPR+S  +D IW++V
Sbjct: 505  VAEFVSKCLVCQQVKAEHQKPAGLLQPLPVPEWKWEHIAMDFVTGLPRTSGGYDSIWIVV 564

Query: 2334 DRLTKSAHFLPVKTTDSAEDYAKLYIQEIVRLHGTSVSIILDCGAQFTAHFWKSFQKGLG 2513
            DRLTKSAHFLPVKTT  A  YA++Y+ EIVRLHG  +SI+ D GAQFT+ FW   Q+ LG
Sbjct: 565  DRLTKSAHFLPVKTTYGAAQYARVYVDEIVRLHGIPISIVSDRGAQFTSRFWGKLQEALG 624

Query: 2514 TKVNLNTVFHPQTDGHKEQTI*TLEDILRACV 2609
            TK++ +T FHPQTDG  E+TI TLED+LRACV
Sbjct: 625  TKLDFSTAFHPQTDGQSERTIKTLEDMLRACV 656



 Score =  181 bits (460), Expect(4) = e-140
 Identities = 115/293 (39%), Positives = 171/293 (58%), Gaps = 4/293 (1%)
 Frame = +1

Query: 1129 EGVKVGFQKIEAVKN*PQTYLNLRDKKFLRSGMLLQALLEGFYSILDSLIRLTQKKVKFQ 1308
            EG++V  +KIEAV+  P+       + F+      +  ++ F  I+  L +LT+K  KF+
Sbjct: 163  EGIRVDTKKIEAVEKWPRPTSVTEIRSFVGLAGYYRRFVKDFSKIVAPLTKLTRKDTKFE 222

Query: 1309 WPDA*EHSFEELKMRLTFFLVLTLSEGTYGFVVYYDALGVGHECIIMQHGKVIAYASRQL 1488
            W DA E+SFE+LK  LT   VL+L +GT G+ V+ DA GVG  C++MQHGKVIAYASRQL
Sbjct: 223  WSDACENSFEKLKACLTTAPVLSLPQGTRGYTVFCDASGVGLGCVLMQHGKVIAYASRQL 282

Query: 1489 KTYEKNYLTHNLELIVMVFTLKI*RYYLYGVHIDIFIDHKSLQYIFKQRKLNLKQNRRLE 1668
            K +E+NY  H+LE+  +VF LKI R+YLYG   +I++DHKSL+YIF+QR LNL+Q R +E
Sbjct: 283  KRHEQNYPIHDLEMAAIVFALKIWRHYLYGETCEIYMDHKSLKYIFQQRDLNLRQRRWME 342

Query: 1669 LKK----TMM*MSSIIQEK*ICS*CS*SAIDGNLSPC*RKNRTMTKEIHRLTSLEV*LLD 1836
            L K    T++      +   +    S  ++ G+L+      R++ +EIH L  + V L  
Sbjct: 343  LLKDYDCTILYHPG--KANVVADALSRKSM-GSLAHISIGRRSLVREIHSLGDIGVRLEV 399

Query: 1837 TEDGDMFV*NRFESSLVAEVKEK*FNDPYLLQLKEGIHNHKTTTFKQGEMMVL 1995
             E   +    R    L+ ++KE    D ++++  E     K   F +G   VL
Sbjct: 400  AETSALLAHFRVRPILMDKIKEAQSKDEFVIKALEDPQGRKGKMFTKGTDGVL 452



 Score = 82.4 bits (202), Expect(4) = e-140
 Identities = 47/119 (39%), Positives = 61/119 (51%)
 Frame = +2

Query: 2612 DFKGNWDDCFTLIEFVYNNSYHTSIKMTPLKALYGQRCRSLIDWFEVGETELLRLDLVYQ 2791
            D    W+    L+EF YNNS+ TSI+M   +ALYG+RCRS I W EVGE +LL  +LV  
Sbjct: 658  DLGVKWEQYLPLVEFAYNNSFQTSIQMAAFEALYGRRCRSPIGWLEVGERKLLGPELVQD 717

Query: 2792 VMEKVKLIQEHLKIAWSIQKSYSNVRCTDLEFQVDN*VFMKVLPIKGVMRFEKKGKLSP 2968
              EK+ +I++                              K+L  + VMRF KKGKLSP
Sbjct: 718  ATEKIHMIRQ------------------------------KMLTAQRVMRFGKKGKLSP 746



 Score = 52.0 bits (123), Expect(4) = e-140
 Identities = 25/46 (54%), Positives = 31/46 (67%)
 Frame = +1

Query: 2947 KERKTQSRYI*PYKILRKIDQVSYELELPQDLIIVHLVFHVSMFRK 3084
            K+ K   RYI P++IL K+  V+Y L LP DL  +H VFHVSM RK
Sbjct: 740  KKGKLSPRYIGPFEILEKVGAVAYRLALPPDLSNIHPVFHVSMLRK 785



 Score = 91.3 bits (225), Expect = 2e-15
 Identities = 51/130 (39%), Positives = 81/130 (62%), Gaps = 1/130 (0%)
 Frame = +2

Query: 308 VSYLKVRKMISKEYIYYLVLVRDTDTQTPTF*SMPIVSEFLEVFSKDLPKVLSDREIKFR 487
           +S +  R+++ +  I YL +V+D+  +      + +V EF++VF ++LP +  +RE++F 
Sbjct: 16  ISVISARRLLRQGCIGYLAVVKDSQAKIGDVTQVSVVKEFVDVFPEELPGLPPEREVEFC 75

Query: 488 LDLLSDTKTIPISPYRMALIELKELKSVKISL**EIY*AKCLT-LGCTVLFVRKKYGSIH 664
           +DL+ DT+ I I PYRMA  ELKELK     L  + +    ++  G  VLFV+KK GS+ 
Sbjct: 76  IDLIPDTRPISIPPYRMAPAELKELKDQLEDLLDKGFIRPSVSPWGAPVLFVKKKDGSLR 135

Query: 665 MYIDYHQLNK 694
           + IDY QLNK
Sbjct: 136 LCIDYRQLNK 145



 Score = 70.1 bits (170), Expect = 6e-09
 Identities = 33/65 (50%), Positives = 48/65 (73%)
 Frame = +2

Query: 1061 YAKNFKCEFWLKSMAFLGHLILEKA*RLVFRKLRQ*RISPRPTSISEIRNFLGLACYYRR 1240
            Y +  KCEFWL+S+AFLGH++ ++  R+  +K+      PRPTS++EIR+F+GLA YYRR
Sbjct: 140  YRQLNKCEFWLESVAFLGHVVSKEGIRVDTKKIEAVEKWPRPTSVTEIRSFVGLAGYYRR 199

Query: 1241 F*RVF 1255
            F + F
Sbjct: 200  FVKDF 204


>gb|EOY08678.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
          Length = 666

 Score =  256 bits (653), Expect(4) = e-136
 Identities = 121/212 (57%), Positives = 156/212 (73%)
 Frame = +3

Query: 1974 TRGDDGTLRYRSRLCIPYVDGLKEKIMEKIHNSRYSIHPGYTKMYHNLNEIYWLNDMKRN 2153
            T+G DG LRY +RL +P  DGL+ KI+E+ H + Y +HPG TKMY +L E+YW   +KR+
Sbjct: 328  TKGTDGVLRYGTRLYVPDGDGLRRKILEEAHMAAYVVHPGATKMYQDLKEVYWWEGLKRD 387

Query: 2154 IEDFIDKCSNCQ*VKAE*QRPGGLAQNINIPV*K*EMINMDFIAGLPRSS*RHDLIWVIV 2333
            + +F+ KC  CQ VKAE Q+P GL Q + +P  K E I MDF+ GLPR+S  +D IW++V
Sbjct: 388  VAEFVSKCLVCQQVKAEHQKPAGLLQPLPVPEWKWEHIAMDFVTGLPRTSGGYDSIWIVV 447

Query: 2334 DRLTKSAHFLPVKTTDSAEDYAKLYIQEIVRLHGTSVSIILDCGAQFTAHFWKSFQKGLG 2513
            DRLTKSAHFL VKTT  A  YA++Y+ EIVRLHG  +SI+ D GAQFT+ FW   Q+ LG
Sbjct: 448  DRLTKSAHFLSVKTTYGAAQYARVYVDEIVRLHGIPISIVSDRGAQFTSRFWGKLQEALG 507

Query: 2514 TKVNLNTVFHPQTDGHKEQTI*TLEDILRACV 2609
            TK++ +T FHPQTDG  E+TI TLED+LRACV
Sbjct: 508  TKLDFSTTFHPQTDGQSERTIQTLEDMLRACV 539



 Score =  182 bits (462), Expect(4) = e-136
 Identities = 116/293 (39%), Positives = 170/293 (58%), Gaps = 4/293 (1%)
 Frame = +1

Query: 1129 EGVKVGFQKIEAVKN*PQTYLNLRDKKFLRSGMLLQALLEGFYSILDSLIRLTQKKVKFQ 1308
            EG++V  +KIEAV+  P+       + F+      +  ++ F  I+  L +LT+K  KF+
Sbjct: 46   EGIRVDTKKIEAVEKWPRPTSVTEIRSFVGLAGYYRRFVKDFSKIVAPLTKLTRKDTKFE 105

Query: 1309 WPDA*EHSFEELKMRLTFFLVLTLSEGTYGFVVYYDALGVGHECIIMQHGKVIAYASRQL 1488
            W DA E+SFE+LK  LT   VL+L +GT G+ V+ DA GVG  C++MQHGKVIAYASRQL
Sbjct: 106  WSDACENSFEKLKACLTTAPVLSLPQGTGGYTVFCDASGVGLGCVLMQHGKVIAYASRQL 165

Query: 1489 KTYEKNYLTHNLELIVMVFTLKI*RYYLYGVHIDIFIDHKSLQYIFKQRKLNLKQNRRLE 1668
            K +E+NY  HNLE+  +VF LKI R+YLYG   +I+ DHKSL+YIF+QR LNL+Q R +E
Sbjct: 166  KRHEQNYPIHNLEMAAIVFALKIWRHYLYGETCEIYTDHKSLKYIFQQRDLNLRQRRWME 225

Query: 1669 LKK----TMM*MSSIIQEK*ICS*CS*SAIDGNLSPC*RKNRTMTKEIHRLTSLEV*LLD 1836
            L K    T++      +   +    S  ++ G+L+      R++ +EIH L  + V L  
Sbjct: 226  LLKDYDCTILYHPG--KANVVADALSRKSM-GSLAHISIGRRSLVREIHSLGDIGVRLEV 282

Query: 1837 TEDGDMFV*NRFESSLVAEVKEK*FNDPYLLQLKEGIHNHKTTTFKQGEMMVL 1995
             E   +    R    L+ ++KE    D ++++  E     K   F +G   VL
Sbjct: 283  AETNALLAHFRVRPILMDKIKEAQSKDEFVIKALEDPQGRKGKMFTKGTDGVL 335



 Score = 97.8 bits (242), Expect(4) = e-136
 Identities = 48/94 (51%), Positives = 63/94 (67%)
 Frame = +2

Query: 2612 DFKGNWDDCFTLIEFVYNNSYHTSIKMTPLKALYGQRCRSLIDWFEVGETELLRLDLVYQ 2791
            D    W+    L+EF YNNS+ TSI+M P +ALYG+RCRS I W EVGE +LL  +LV  
Sbjct: 541  DLGVKWEQYLPLVEFAYNNSFQTSIQMAPFEALYGRRCRSPIGWLEVGERKLLGPELVQD 600

Query: 2792 VMEKVKLIQEHLKIAWSIQKSYSNVRCTDLEFQV 2893
              EK+ +I++ +  A S QKSY++ R  DLEFQV
Sbjct: 601  ATEKIHMIRQKMLTAQSRQKSYADNRRRDLEFQV 634



 Score = 21.9 bits (45), Expect(4) = e-136
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 996  SEVDHIEHLRIVLQTL 1043
            S  +H +HL+IVLQ L
Sbjct: 2    SREEHEQHLKIVLQIL 17



 Score = 77.0 bits (188), Expect = 5e-11
 Identities = 36/75 (48%), Positives = 55/75 (73%)
 Frame = +2

Query: 1031 IANTVQDLKLYAKNFKCEFWLKSMAFLGHLILEKA*RLVFRKLRQ*RISPRPTSISEIRN 1210
            +   +++ +LYAK  KCEFWL+S+AFLGH++ ++  R+  +K+      PRPTS++EIR+
Sbjct: 13   VLQILREHRLYAKFSKCEFWLESVAFLGHVVSKEGIRVDTKKIEAVEKWPRPTSVTEIRS 72

Query: 1211 FLGLACYYRRF*RVF 1255
            F+GLA YYRRF + F
Sbjct: 73   FVGLAGYYRRFVKDF 87


>dbj|BAL46523.1| hypothetical protein [Gentiana scabra x Gentiana triflora]
          Length = 1152

 Score =  240 bits (612), Expect(3) = e-131
 Identities = 114/208 (54%), Positives = 147/208 (70%)
 Frame = +3

Query: 1986 DGTLRYRSRLCIPYVDGLKEKIMEKIHNSRYSIHPGYTKMYHNLNEIYWLNDMKRNIEDF 2165
            +G L Y  RLC+P VDGL++++M++ H   +++HPG TKMY +L E YW   MK NI +F
Sbjct: 699  NGHLWYGDRLCVPDVDGLRQQVMDEAHKIAFAVHPGSTKMYRDLKERYWWLGMKLNIAEF 758

Query: 2166 IDKCSNCQ*VKAE*QRPGGLAQNINIPV*K*EMINMDFIAGLPRSS*RHDLIWVIVDRLT 2345
            + KC  CQ VKAE +RPGGL + + +P  K E I MDFI GLPR+   HD+IWVIVDRLT
Sbjct: 759  VAKCDTCQRVKAEHRRPGGLLKPLEVPEWKWENITMDFITGLPRTKSGHDMIWVIVDRLT 818

Query: 2346 KSAHFLPVKTTDSAEDYAKLYIQEIVRLHGTSVSIILDCGAQFTAHFWKSFQKGLGTKVN 2525
            KSAHFLP K     + + +LY+  IVRLHG  +SI+ D  ++F +HFWK  QK   TK +
Sbjct: 819  KSAHFLPCKVDMPIKKFTQLYLDNIVRLHGVPLSIVSDRDSRFISHFWKGLQKAFETKTD 878

Query: 2526 LNTVFHPQTDGHKEQTI*TLEDILRACV 2609
            L+T FHPQTDG  E+TI TLED+LRACV
Sbjct: 879  LSTAFHPQTDGQSERTIQTLEDMLRACV 906



 Score =  160 bits (404), Expect(3) = e-131
 Identities = 107/284 (37%), Positives = 148/284 (52%), Gaps = 1/284 (0%)
 Frame = +1

Query: 1126 GEGVKVGFQKIEAVKN*PQTYLNLRDKKFLRSGMLLQALLEGFYSILDSLIRLTQKKVKF 1305
            G+G++V   KIEAV   P+       + FL      +  ++ F  I   L RLTQK +KF
Sbjct: 418  GDGIQVDPAKIEAVSKWPRPTTVTEIRSFLGLAGYYRKFVQDFSKIATPLTRLTQKNIKF 477

Query: 1306 QWPDA*EHSFEELKMRLTFFLVLTLSEGTYGFVVYYDALGVGHECIIMQHGKVIAYASRQ 1485
            +W    E +F+ LK +LT   VL L E    + VY DA G G  C++MQ GKVIAYASRQ
Sbjct: 478  EWSKECEEAFQTLKDKLTVAPVLALPEVFDNYDVYTDASGQGLGCVLMQAGKVIAYASRQ 537

Query: 1486 LKTYEKNYLTHNLELIVMVFTLKI*RYYLYGVHIDIFIDHKSLQYIFKQRKLNLKQNRRL 1665
            LK +EKNY TH+LEL  +VF LK  R+YLYGV   IF DHKSL++ F Q  LN++Q R L
Sbjct: 538  LKVHEKNYPTHDLELAAVVFALKQWRHYLYGVKARIFTDHKSLKFFFTQENLNMRQRRWL 597

Query: 1666 ELKKTMM*MSSIIQEK*ICS*CS*SAIDGNLSPC*RKNRTMTKEIHRLTSLEV*LLDTE- 1842
            E  K           K      +    D           T+ + IH+L SL++ +++ E 
Sbjct: 598  EFVKDYDLDIQYHPGK------ANVVADALSRRPVNAITTLQEVIHQLDSLQIQVVEREG 651

Query: 1843 DGDMFV*NRFESSLVAEVKEK*FNDPYLLQLKEGIHNHKTTTFK 1974
            +   F      S L+ +++ K   DP L+ LK       T  ++
Sbjct: 652  EAQCFAPLMARSELLDDIRAKQDEDPVLVDLKRVAREKPTVGYQ 695



 Score =  121 bits (303), Expect(3) = e-131
 Identities = 58/116 (50%), Positives = 83/116 (71%)
 Frame = +2

Query: 2621 GNWDDCFTLIEFVYNNSYHTSIKMTPLKALYGQRCRSLIDWFEVGETELLRLDLVYQVME 2800
            G+WDD  ++ EF YNNSYH S+ M P +ALYG++CR+ + W EVGE +    +LV Q  E
Sbjct: 911  GSWDDFLSVAEFAYNNSYHASLGMPPFEALYGRKCRTPLYWDEVGEKQYTGPELVEQAKE 970

Query: 2801 KVKLIQEHLKIAWSIQKSYSNVRCTDLEFQVDN*VFMKVLPIKGVMRFEKKGKLSP 2968
            KV+LI+++LK A   QKS++++R   LEF V + V+++  P+KGV RF +KGKLSP
Sbjct: 971  KVELIRKNLKAAQDRQKSWADIRRRPLEFAVGDRVYLRASPMKGVKRFGQKGKLSP 1026



 Score =  248 bits (632), Expect(2) = 1e-63
 Identities = 151/373 (40%), Positives = 210/373 (56%), Gaps = 4/373 (1%)
 Frame = +2

Query: 137  TNLVELEMVDFDIIMNMDWLSSYYVSLGCRTKIVSFEFPSKPIIE*KDDAVSLIGR---F 307
            ++L  L+  +FD+I+ MDWLS  +V + CR K V F  P K     + +      +    
Sbjct: 85   SDLTVLDFTNFDVILGMDWLSKNFVHVDCRGKKVIFRVPGKSDKTFQGNVYKASKKKYPI 144

Query: 308  VSYLKVRKMISKEYIYYLVLVRDTDTQTPTF*SMPIVSEFLEVFSKDLPKVLSDREIKFR 487
            +S ++  K + K    Y++   DT+  TP      IV +F EVF  +LP  + DR+I+F 
Sbjct: 145  ISAVRAMKALQKGCEGYVLYAMDTEKHTPKLEETSIVKDFPEVFPDELPGNMPDRDIEFE 204

Query: 488  LDLLSDTKTIPISPYRMALIELKELK-SVKISL**EIY*AKCLTLGCTVLFVRKKYGSIH 664
            + L+        +PYRMA  ELKELK  +K  L   +        G  VLFV+KK GS+ 
Sbjct: 205  IQLIPGAAPTAKAPYRMAPAELKELKIQLKDMLERNVIQPSTSPWGAPVLFVKKKDGSLR 264

Query: 665  MYIDYHQLNKVTIKNKYSLSRIDDLFEQLQGV*CYSKINIILGYHQFKVKRVDILKIAFK 844
            M IDY  LN +TIKNKY L RIDDLF QLQG   +SKI++  GYHQ K+K  D  K AF 
Sbjct: 265  MCIDYRALNNLTIKNKYPLPRIDDLFNQLQGKKVFSKIDLRSGYHQLKIKVADRPKTAFS 324

Query: 845  TRYRHFEFCVISFGLTNAPAVFY*SYEQDLQALL*SFDYCVY**YSNLFS**G*SYRTSQ 1024
            TRY H+EF V+ FGLTNAP+ F    ++     L  F   V+     ++S     +    
Sbjct: 325  TRYGHYEFLVMPFGLTNAPSAFMDLMQRVFMPYLDKF-VVVFIDDILIYSKDEKEHEEHL 383

Query: 1025 NSIANTVQDLKLYAKNFKCEFWLKSMAFLGHLILEKA*RLVFRKLRQ*RISPRPTSISEI 1204
              +  T+++ KLYAK  KCEFWLK ++FLGH+I     ++   K+      PRPT+++EI
Sbjct: 384  RIVLQTLKEKKLYAKFSKCEFWLKQVSFLGHVISGDGIQVDPAKIEAVSKWPRPTTVTEI 443

Query: 1205 RNFLGLACYYRRF 1243
            R+FLGLA YYR+F
Sbjct: 444  RSFLGLAGYYRKF 456



 Score = 25.4 bits (54), Expect(2) = 1e-63
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 3   VAKKFRIEQERLHKPFEVFTPVGESVIVRRV 95
           +A+K  +  + L KP  + TP+G    V +V
Sbjct: 40  IARKLNLPLQELEKPLSITTPLGRVTKVAQV 70


>gb|EOY14099.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
          Length = 1502

 Score =  216 bits (550), Expect(3) = e-128
 Identities = 109/214 (50%), Positives = 142/214 (66%), Gaps = 2/214 (0%)
 Frame = +3

Query: 1974 TRGDDGTLRYRSRLCIPYVDGLKEKIMEKIHNSRYSIHPGYTKMYHNLNEIYWLNDMKRN 2153
            T+G DG LRY +RL +P  DGL+ +I+E+ H + Y +HPG TKMY +L E+YW   +KR+
Sbjct: 1126 TKGTDGVLRYGTRLYVPDGDGLRREILEEAHMAAYVVHPGATKMYQDLKEVYWWEGLKRD 1185

Query: 2154 IEDFIDKCSNCQ*VKAE*QRPGGLAQNINIPV*--K*EMINMDFIAGLPRSS*RHDLIWV 2327
            + +F                         +PV   K E I MDF+ GLPR+S  +D IW+
Sbjct: 1186 VAEF------------------------PLPVLEWKWEHIAMDFVTGLPRTSGGYDSIWI 1221

Query: 2328 IVDRLTKSAHFLPVKTTDSAEDYAKLYIQEIVRLHGTSVSIILDCGAQFTAHFWKSFQKG 2507
            +VDRLTKSAHFLPVKTT  A  YA++Y+ EIVRLHG  +SI+ D GAQFT+ FW   Q+ 
Sbjct: 1222 VVDRLTKSAHFLPVKTTYGAAQYARVYVDEIVRLHGIPISIVSDRGAQFTSRFWGKLQEA 1281

Query: 2508 LGTKVNLNTVFHPQTDGHKEQTI*TLEDILRACV 2609
            LGTK++ +T FHPQTDG  E+TI TLED+LRACV
Sbjct: 1282 LGTKLDFSTAFHPQTDGQSERTIQTLEDMLRACV 1315



 Score =  179 bits (454), Expect(3) = e-128
 Identities = 115/293 (39%), Positives = 169/293 (57%), Gaps = 4/293 (1%)
 Frame = +1

Query: 1129 EGVKVGFQKIEAVKN*PQTYLNLRDKKFLRSGMLLQALLEGFYSILDSLIRLTQKKVKFQ 1308
            EG++V  +KIEAV+  P+       + F+      +  ++ F  I+  L +LT+K  KF+
Sbjct: 844  EGIQVDTKKIEAVEKWPRPTSVTEIRSFVGLAGYYRRFVKDFSKIVAPLTKLTRKDTKFE 903

Query: 1309 WPDA*EHSFEELKMRLTFFLVLTLSEGTYGFVVYYDALGVGHECIIMQHGKVIAYASRQL 1488
            W DA E+SFE+LK  LT   VL+L +GT G++V+ DA GVG  C++MQHGKVIAYASRQL
Sbjct: 904  WSDACENSFEKLKACLTTAPVLSLPQGTGGYMVFCDASGVGLGCVLMQHGKVIAYASRQL 963

Query: 1489 KTYEKNYLTHNLELIVMVFTLKI*RYYLYGVHIDIFIDHKSLQYIFKQRKLNLKQNRRLE 1668
            K +E NY  H+LE+  +VF LKI R+YLYG   +I+ DHKSL+YIF+QR LNL+Q R +E
Sbjct: 964  KRHEHNYPIHDLEMAAIVFALKIWRHYLYGETCEIYTDHKSLKYIFQQRDLNLRQRRWME 1023

Query: 1669 LKK----TMM*MSSIIQEK*ICS*CS*SAIDGNLSPC*RKNRTMTKEIHRLTSLEV*LLD 1836
            L K    T++      +   +    S  ++ G+L+      R++ +EIH L  + V L  
Sbjct: 1024 LLKDYDCTILYHPG--KANVVADALSRKSM-GSLAHISIGRRSLVREIHSLGDIGVRLEV 1080

Query: 1837 TEDGDMFV*NRFESSLVAEVKEK*FNDPYLLQLKEGIHNHKTTTFKQGEMMVL 1995
             E   +    R    L+  +KE    D ++++  E     K   F +G   VL
Sbjct: 1081 AETNALLAHFRVRPILMDRIKEAQSKDEFVIKALEDPQGRKGKMFTKGTDGVL 1133



 Score =  116 bits (291), Expect(3) = e-128
 Identities = 63/131 (48%), Positives = 84/131 (64%)
 Frame = +2

Query: 2612 DFKGNWDDCFTLIEFVYNNSYHTSIKMTPLKALYGQRCRSLIDWFEVGETELLRLDLVYQ 2791
            D    W+    L+EF YNNS+ TSI+M P +ALYG+RCRS I W EVGE +LL  +L+  
Sbjct: 1317 DLGVRWEQYLPLVEFAYNNSFQTSIQMAPFEALYGRRCRSPIGWLEVGERKLLGPELMQD 1376

Query: 2792 VMEKVKLIQEHLKIAWSIQKSYSNVRCTDLEFQVDN*VFMKVLPIKGVMRFEKKGKLSPD 2971
              EK+ +I++ +  A S QKSY++ R  DLEFQV + VF+KV P KGVMR     K +PD
Sbjct: 1377 ATEKIHMIRQRMLTAQSRQKSYADNRRRDLEFQVGDHVFLKVSPTKGVMR-----KYNPD 1431

Query: 2972 IFNHTRSYERL 3004
              +H   YE +
Sbjct: 1432 P-SHVIRYETI 1441



 Score =  247 bits (630), Expect = 3e-62
 Identities = 151/373 (40%), Positives = 214/373 (57%), Gaps = 1/373 (0%)
 Frame = +2

Query: 140  NLVELEMVDFDIIMNMDWLSSYYVSLGCRTKIVSFEFPSKPIIE*KDDAVSLIGRFVSYL 319
            NLV L+ +DFD+I+ MDWLS  + S+ C  K+V                   IG      
Sbjct: 563  NLVVLDTLDFDVILGMDWLSPCHASVDCYHKLVK------------------IGDVTQ-- 602

Query: 320  KVRKMISKEYIYYLVLVRDTDTQTPTF*SMPIVSEFLEVFSKDLPKVLSDREIKFRLDLL 499
                                         + +V EF++VF ++LP +  +REI+F +DL+
Sbjct: 603  -----------------------------VSVVKEFVDVFPEELPGLPPEREIEFCIDLI 633

Query: 500  SDTKTIPISPYRMALIELKELKSVKISL**EIY*AKCLT-LGCTVLFVRKKYGSIHMYID 676
             DT+ I I PYRMA  ELKELK     L  + +    ++  G  VLFV+KK GS+ + ID
Sbjct: 634  PDTRPISIPPYRMAPAELKELKDQLEDLLDKGFIRPSVSPWGAPVLFVKKKDGSLRLCID 693

Query: 677  YHQLNKVTIKNKYSLSRIDDLFEQLQGV*CYSKINIILGYHQFKVKRVDILKIAFKTRYR 856
            Y QLNKVT+KNKY L RIDDLF+QLQG  C+SKI++  GYHQ +++  DI KIAF+TRY 
Sbjct: 694  YRQLNKVTVKNKYPLPRIDDLFDQLQGAQCFSKIDLRSGYHQLRIRNEDIPKIAFQTRYG 753

Query: 857  HFEFCVISFGLTNAPAVFY*SYEQDLQALL*SFDYCVY**YSNLFS**G*SYRTSQNSIA 1036
            H+EF V+SFGLTNAPA F     +  +  L  F   V+     ++S     +      + 
Sbjct: 754  HYEFLVMSFGLTNAPAAFMDLMNRVFKPYLDKF-VVVFIDDILIYSKSREEHEQHLKIVL 812

Query: 1037 NTVQDLKLYAKNFKCEFWLKSMAFLGHLILEKA*RLVFRKLRQ*RISPRPTSISEIRNFL 1216
              +++ +LYAK  KCEFWL+S+AFLGH++ ++  ++  +K+      PRPTS++EIR+F+
Sbjct: 813  QILREHRLYAKFSKCEFWLESVAFLGHVVSKEGIQVDTKKIEAVEKWPRPTSVTEIRSFV 872

Query: 1217 GLACYYRRF*RVF 1255
            GLA YYRRF + F
Sbjct: 873  GLAGYYRRFVKDF 885


>gb|EOY03078.1| Retrotransposon protein, putative [Theobroma cacao]
          Length = 1263

 Score =  202 bits (513), Expect(3) = e-127
 Identities = 103/212 (48%), Positives = 137/212 (64%)
 Frame = +3

Query: 1974 TRGDDGTLRYRSRLCIPYVDGLKEKIMEKIHNSRYSIHPGYTKMYHNLNEIYWLNDMKRN 2153
            T+G DG LRY +RL +P  DGL+ +I+E+ H + Y +HPG TKMY +L E+YW   +KR+
Sbjct: 843  TKGTDGVLRYGTRLYVPDGDGLRREILEEAHMAAYVVHPGATKMYQDLKEVYWWEGLKRD 902

Query: 2154 IEDFIDKCSNCQ*VKAE*QRPGGLAQNINIPV*K*EMINMDFIAGLPRSS*RHDLIWVIV 2333
            + +F+ KC  CQ VKAE Q+   L Q + +P  K E I MDF+ GLPR++  +D IW++V
Sbjct: 903  VAEFVSKCLVCQQVKAEHQKLTRLLQPLPVPKWKWEHIAMDFVTGLPRTNGGYDSIWIVV 962

Query: 2334 DRLTKSAHFLPVKTTDSAEDYAKLYIQEIVRLHGTSVSIILDCGAQFTAHFWKSFQKGLG 2513
            DRLTKSAHFLPVK T  A  YA++Y+ EI+                         Q+ LG
Sbjct: 963  DRLTKSAHFLPVKITYGAAQYARVYVDEIL-------------------------QEPLG 997

Query: 2514 TKVNLNTVFHPQTDGHKEQTI*TLEDILRACV 2609
            TK++ +T FHPQTDG  EQTI TLED+LRACV
Sbjct: 998  TKLDFSTTFHPQTDGQSEQTIQTLEDMLRACV 1029



 Score =  175 bits (444), Expect(3) = e-127
 Identities = 114/293 (38%), Positives = 167/293 (56%), Gaps = 4/293 (1%)
 Frame = +1

Query: 1129 EGVKVGFQKIEAVKN*PQTYLNLRDKKFLRSGMLLQALLEGFYSILDSLIRLTQKKVKFQ 1308
            +G++V  +KIEAV+  P+       + F+      +  ++ F  I+  L +LT K  KF+
Sbjct: 561  DGIQVDSKKIEAVEKWPRPTSVTEIRSFVGLAGYYRRFVKDFSKIVAPLTKLTCKDAKFE 620

Query: 1309 WPDA*EHSFEELKMRLTFFLVLTLSEGTYGFVVYYDALGVGHECIIMQHGKVIAYASRQL 1488
            W DA E+SFE+LK  LT   VL+L +GT G++V+ DA  VG  C++MQHGKVIAYAS QL
Sbjct: 621  WSDAYENSFEKLKACLTIAPVLSLPQGTRGYMVFCDASRVGLGCVLMQHGKVIAYASSQL 680

Query: 1489 KTYEKNYLTHNLELIVMVFTLKI*RYYLYGVHIDIFIDHKSLQYIFKQRKLNLKQNRRLE 1668
            K +E+NY  HNLE+  +VF LKI R+YLYG   +I+ DHKSL+YIF+QR LNL+Q R +E
Sbjct: 681  KRHEQNYPIHNLEIAAIVFALKIWRHYLYGETCEIYTDHKSLKYIFQQRDLNLRQRRWME 740

Query: 1669 LKK----TMM*MSSIIQEK*ICS*CS*SAIDGNLSPC*RKNRTMTKEIHRLTSLEV*LLD 1836
            L K    T++      +   +    S  ++ G+L+      R++ KEIH L  + V L  
Sbjct: 741  LLKDYDCTILYHPG--KANVVADAFSRKSM-GSLAHISTGRRSLVKEIHSLGDIGVHLEV 797

Query: 1837 TEDGDMFV*NRFESSLVAEVKEK*FNDPYLLQLKEGIHNHKTTTFKQGEMMVL 1995
             E   +    R    L+ ++KE    D ++ +  E     K   F +G   VL
Sbjct: 798  AETNALLAHFRVRPILMDKIKEAQSKDEFVTKAIEDPQGRKGKMFTKGTDGVL 850



 Score =  129 bits (325), Expect(3) = e-127
 Identities = 70/140 (50%), Positives = 89/140 (63%), Gaps = 2/140 (1%)
 Frame = +2

Query: 2612 DFKGNWDDCFTLIEFVYNNSYHTSIKMTPLKALYGQRCRSLIDWFEVGETELLRLDLVYQ 2791
            D    W+    L+EF YNNS+ TSI+M P +ALYG+RCRS I W EVGE +LL   LV  
Sbjct: 1031 DLGVRWEQYLPLVEFAYNNSFQTSIQMAPFEALYGRRCRSPIGWLEVGERKLLGPKLVQD 1090

Query: 2792 VMEKVKLIQEHLKIAWSIQKSYSNVRCTDLEFQVDN*VFMKVLPIKGVMRFEKKGKLSPD 2971
              EK+ +I++ +  A S QKSY + R  DLEFQV + VF+KV P KGVMRF KKGKLSP 
Sbjct: 1091 ATEKIHMIRQRMLTAQSRQKSYVDNRRRDLEFQVGDHVFLKVSPTKGVMRFGKKGKLSPR 1150

Query: 2972 IFNHTRSYERL--IKYLMSL 3025
                    ER+  + Y ++L
Sbjct: 1151 YIGPFEILERVGEVAYRLAL 1170



 Score =  251 bits (642), Expect = 1e-63
 Identities = 145/374 (38%), Positives = 220/374 (58%), Gaps = 2/374 (0%)
 Frame = +2

Query: 140  NLVELEMVDFDIIMNMDWLSSYYVSLGCRTKIVSFEFPSKPIIE*KDDAVSLIGRFVSYL 319
            NLV L+ +DFD+I+ MDWLS  + S+ C  K+V F+FP +P    + D  +     +S +
Sbjct: 262  NLVVLDTLDFDVILGMDWLSPCHASVDCYHKLVRFDFPGEPSFSIQGDRSNAPTNLISVI 321

Query: 320  KVRKMISKEYIYYLVLVRDTDTQTPTF*SMPIVSEFLEVFSKDLPKVLSDREIKFRLDLL 499
              R+++ ++ + YL +V+DT  +      + +V EF++VF ++LP++   +E+K +L+ L
Sbjct: 322  SARRLLRQDCVGYLAVVKDTQAKIGDVTQVSVVKEFVDVFPEELPEL---KELKDQLEDL 378

Query: 500  SDTKTI--PISPYRMALIELKELKSVKISL**EIY*AKCLTLGCTVLFVRKKYGSIHMYI 673
             D   I   +SP+                             G  VLFV+KK GS+ + I
Sbjct: 379  LDKGFIRPSVSPW-----------------------------GAPVLFVKKKDGSLRLCI 409

Query: 674  DYHQLNKVTIKNKYSLSRIDDLFEQLQGV*CYSKINIILGYHQFKVKRVDILKIAFKTRY 853
            DY QLNKVT+KNKY L RIDDLF+QLQ   C+SKI++  GYHQ +++  DI K AF+TRY
Sbjct: 410  DYRQLNKVTVKNKYPLPRIDDLFDQLQRAQCFSKIDLRSGYHQLRIRNEDIPKTAFRTRY 469

Query: 854  RHFEFCVISFGLTNAPAVFY*SYEQDLQALL*SFDYCVY**YSNLFS**G*SYRTSQNSI 1033
             H+EF V+SFGLTNAPA F     +  +  L  F   V+     ++S     +      +
Sbjct: 470  GHYEFLVMSFGLTNAPAAFMDLMNRVFKPYLDKF-MVVFIDDILIYSKSRKEHEQHLKIV 528

Query: 1034 ANTVQDLKLYAKNFKCEFWLKSMAFLGHLILEKA*RLVFRKLRQ*RISPRPTSISEIRNF 1213
               +++ +LYAK  KCEFWL+S+AFLGH++ +   ++  +K+      PRPTS++EIR+F
Sbjct: 529  LQILKEHQLYAKFSKCEFWLESVAFLGHVVSKDGIQVDSKKIEAVEKWPRPTSVTEIRSF 588

Query: 1214 LGLACYYRRF*RVF 1255
            +GLA YYRRF + F
Sbjct: 589  VGLAGYYRRFVKDF 602


>gb|EOY21478.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
          Length = 878

 Score =  257 bits (657), Expect(4) = e-125
 Identities = 121/212 (57%), Positives = 157/212 (74%)
 Frame = +3

Query: 1974 TRGDDGTLRYRSRLCIPYVDGLKEKIMEKIHNSRYSIHPGYTKMYHNLNEIYWLNDMKRN 2153
            T+G DG LRY +RL +P  DGL+ +I+E+ H + Y +HPG TKMY +L E+YW   +KR+
Sbjct: 611  TKGTDGVLRYGTRLYVPDGDGLRREILEEAHMAAYVVHPGATKMYQDLKEVYWWEGLKRD 670

Query: 2154 IEDFIDKCSNCQ*VKAE*QRPGGLAQNINIPV*K*EMINMDFIAGLPRSS*RHDLIWVIV 2333
            + +F+ KC  CQ VKAE Q+P GL Q + +P  K E I MDF+ GLPR+S  +D IW++V
Sbjct: 671  VAEFVSKCLVCQQVKAEHQKPAGLLQPLPVPEWKWEHIAMDFVTGLPRTSGGYDSIWIVV 730

Query: 2334 DRLTKSAHFLPVKTTDSAEDYAKLYIQEIVRLHGTSVSIILDCGAQFTAHFWKSFQKGLG 2513
            DRLTKSAHFLPVKTT  A  YA++Y+ EIVRLHG  +SI+ D GAQFT+ FW   Q+ LG
Sbjct: 731  DRLTKSAHFLPVKTTYGAAQYARVYVDEIVRLHGIPISIVSDRGAQFTSRFWGKLQEALG 790

Query: 2514 TKVNLNTVFHPQTDGHKEQTI*TLEDILRACV 2609
            TK++ +T FHPQTDG  E+TI TLED+LRACV
Sbjct: 791  TKLDFSTAFHPQTDGQSERTIQTLEDMLRACV 822



 Score =  167 bits (423), Expect(4) = e-125
 Identities = 105/255 (41%), Positives = 151/255 (59%), Gaps = 4/255 (1%)
 Frame = +1

Query: 1243 LEGFYSILDSLIRLTQKKVKFQWPDA*EHSFEELKMRLTFFLVLTLSEGTYGFVVYYDAL 1422
            ++ F  I+  L +LT+K  KF+W DA E+SFE+LK  LT   VL+L +GT G+ V+ DA 
Sbjct: 367  VKDFSKIVAPLTKLTRKDTKFEWSDACENSFEKLKACLTTAPVLSLPQGTGGYTVFCDAS 426

Query: 1423 GVGHECIIMQHGKVIAYASRQLKTYEKNYLTHNLELIVMVFTLKI*RYYLYGVHIDIFID 1602
            GVG  C++MQHGKVIAYASRQLK +E+NY  H+LE+  +VF LKI R+YLYG   +I+ D
Sbjct: 427  GVGLGCVLMQHGKVIAYASRQLKRHEQNYPIHDLEMAAIVFALKIWRHYLYGETCEIYTD 486

Query: 1603 HKSLQYIFKQRKLNLKQNRRLELKK----TMM*MSSIIQEK*ICS*CS*SAIDGNLSPC* 1770
            HKSL+YIF+QR LNL+Q R +EL K    T++      +   +    S  ++ G+L+   
Sbjct: 487  HKSLKYIFQQRDLNLRQRRWMELLKDYDCTILYHPG--KANVVADALSRKSM-GSLAHIF 543

Query: 1771 RKNRTMTKEIHRLTSLEV*LLDTEDGDMFV*NRFESSLVAEVKEK*FNDPYLLQLKEGIH 1950
               R++ +EIH L  + V L   E   +    R    L+  +KE    D ++++  E   
Sbjct: 544  IGRRSLVREIHSLGDIGVRLEVAETNALLAHFRVRPILMDRIKEAQSKDEFVIKALEDPQ 603

Query: 1951 NHKTTTFKQGEMMVL 1995
              K   F +G   VL
Sbjct: 604  GRKGKMFTKGTDGVL 618



 Score = 61.6 bits (148), Expect(4) = e-125
 Identities = 27/53 (50%), Positives = 35/53 (66%)
 Frame = +2

Query: 2612 DFKGNWDDCFTLIEFVYNNSYHTSIKMTPLKALYGQRCRSLIDWFEVGETELL 2770
            D    W+    L+EF YNNS+ TSI+M P +ALYG+RCRS I W E G+ + L
Sbjct: 824  DLGVRWEQYLPLVEFAYNNSFQTSIQMAPFEALYGRRCRSPIGWLEGGKKKPL 876



 Score = 37.4 bits (85), Expect(4) = e-125
 Identities = 17/27 (62%), Positives = 22/27 (81%)
 Frame = +2

Query: 1175 SPRPTSISEIRNFLGLACYYRRF*RVF 1255
            S  PTS++EIR+F+GLA YYRRF + F
Sbjct: 344  SAPPTSVTEIRSFVGLAGYYRRFVKDF 370


>gb|EOY26451.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
          Length = 679

 Score =  255 bits (652), Expect(3) = e-123
 Identities = 120/212 (56%), Positives = 157/212 (74%)
 Frame = +3

Query: 1974 TRGDDGTLRYRSRLCIPYVDGLKEKIMEKIHNSRYSIHPGYTKMYHNLNEIYWLNDMKRN 2153
            T+G DG LRY +RL +P  DGL+ +I+E+ H + Y +HPG TKMY +L E+YW   +KR+
Sbjct: 234  TKGTDGVLRYGTRLYVPDGDGLRREILEEAHMAAYVVHPGATKMYQDLKEVYWWEGLKRD 293

Query: 2154 IEDFIDKCSNCQ*VKAE*QRPGGLAQNINIPV*K*EMINMDFIAGLPRSS*RHDLIWVIV 2333
            + +F+ KC  CQ VKAE Q+P GL Q + +P  K E I MDF+ GLPR+S  +D IW++V
Sbjct: 294  VAEFVSKCLVCQQVKAEHQKPAGLLQPLPVPEWKWEHIAMDFVTGLPRTSGGYDSIWIVV 353

Query: 2334 DRLTKSAHFLPVKTTDSAEDYAKLYIQEIVRLHGTSVSIILDCGAQFTAHFWKSFQKGLG 2513
            D+LTKSAHFLPVKTT  A  YA++Y+ EIVRLHG  +SI+ D GAQFT+ FW   Q+ LG
Sbjct: 354  DQLTKSAHFLPVKTTYGAAHYARVYVDEIVRLHGIPISIVSDRGAQFTSRFWGKLQEALG 413

Query: 2514 TKVNLNTVFHPQTDGHKEQTI*TLEDILRACV 2609
            TK++ +T FHPQTDG  E+TI TLED+LRACV
Sbjct: 414  TKLDFSTAFHPQTDGQSERTIQTLEDMLRACV 445



 Score =  129 bits (325), Expect(3) = e-123
 Identities = 68/140 (48%), Positives = 91/140 (65%), Gaps = 2/140 (1%)
 Frame = +2

Query: 2612 DFKGNWDDCFTLIEFVYNNSYHTSIKMTPLKALYGQRCRSLIDWFEVGETELLRLDLVYQ 2791
            D    W+    L+EF YNNS+ TSI+M P +ALYG+RCRS I W EVGE +LL  +LV  
Sbjct: 447  DLGVRWEQYLPLVEFAYNNSFQTSIQMAPFEALYGRRCRSPIGWLEVGERKLLGPELVQD 506

Query: 2792 VMEKVKLIQEHLKIAWSIQKSYSNVRCTDLEFQVDN*VFMKVLPIKGVMRFEKKGKLSPD 2971
              EK+ +I++ +  A S QKSY++ R  DLEFQV + VF+K  P KGVMRF KKGKLSP 
Sbjct: 507  ATEKIHMIRQRMLTAQSRQKSYADNRRRDLEFQVGDHVFLKFSPTKGVMRFGKKGKLSPR 566

Query: 2972 IFNHTRSYERL--IKYLMSL 3025
                 +  E++  + Y ++L
Sbjct: 567  YIGPFKILEKVGAVAYRLAL 586



 Score =  107 bits (267), Expect(3) = e-123
 Identities = 76/198 (38%), Positives = 111/198 (56%), Gaps = 4/198 (2%)
 Frame = +1

Query: 1414 DALGVGHECIIMQHGKVIAYASRQLKTYEKNYLTHNLELIVMVFTLKI*RYYLYGVHIDI 1593
            +AL VG   ++MQHGKVIAYASRQLK +E+NY   +LE+ V+VF LKI R+YLYG   +I
Sbjct: 49   EALWVGG--VLMQHGKVIAYASRQLKRHEQNYPILDLEMAVIVFALKIWRHYLYGETCEI 106

Query: 1594 FIDHKSLQYIFKQRKLNLKQNRRLELKK----TMM*MSSIIQEK*ICS*CS*SAIDGNLS 1761
            + DHKSL+YIF+QR  NL+Q R +EL K    T++      +   +    S  ++ G+L+
Sbjct: 107  YTDHKSLKYIFQQRDFNLRQRRWMELLKDYDCTILYHPG--KANVVADALSRKSM-GSLA 163

Query: 1762 PC*RKNRTMTKEIHRLTSLEV*LLDTEDGDMFV*NRFESSLVAEVKEK*FNDPYLLQLKE 1941
                  R++ +EIH L  + V L   E   +    R    L+  +KE    D ++++  E
Sbjct: 164  HISIGRRSLVREIHSLGDIGVRLEVAETNALLAHFRVRPILMDRIKEAQSKDEFVIKALE 223

Query: 1942 GIHNHKTTTFKQGEMMVL 1995
                 K   F +G   VL
Sbjct: 224  DPRGRKGKMFTKGTDGVL 241


>gb|ABA95392.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 785

 Score =  192 bits (487), Expect(5) = e-122
 Identities = 116/318 (36%), Positives = 174/318 (54%), Gaps = 6/318 (1%)
 Frame = +3

Query: 1674 KDYDVDVLYHSRKINM*LMLLVGDRWES*PMLKKK*NHDEGNSPINQ------FRSLTFG 1835
            KDYD+ + YH  K N+     V D       L +K +H   +  +NQ      F+ L   
Sbjct: 247  KDYDLGIHYHPGKANV-----VADA------LSRKLHHITASFLVNQPELHEEFQKLNLE 295

Query: 1836 YRRW*YVCLEQVRILLSSRSEGEIV**SLFIATEGRYPQS*DYNF*TRGDDGTLRYRSRL 2015
                 ++    ++  L S+ +   +        + +  +    NF ++  +G + +  ++
Sbjct: 296  VVEDGFIAALALQPTLQSQIKAAQLTDKRVAKIKTQIKEGLTSNF-SQSPNGIILHGKQI 354

Query: 2016 CIPYVDGLKEKIMEKIHNSRYSIHPGYTKMYHNLNEIYWLNDMKRNIEDFIDKCSNCQ*V 2195
             +P    ++E I+++ H S  SIHPG TKMY +L   YW   M+R+I  ++  C  CQ +
Sbjct: 355  YVPDDLQIRELILKEAHESPLSIHPGCTKMYQDLRTRYWWPSMRRDIAAYVAICDVCQRI 414

Query: 2196 KAE*QRPGGLAQNINIPV*K*EMINMDFIAGLPRSS*RHDLIWVIVDRLTKSAHFLPVKT 2375
            KAE QR  GL Q + +P  K + + MDFI GLP++   HD IWVIVDRLTK AHF+PV  
Sbjct: 415  KAEHQRLAGLLQPLQVPEWKFDEVGMDFITGLPKTPHGHDSIWVIVDRLTKVAHFIPVHM 474

Query: 2376 TDSAEDYAKLYIQEIVRLHGTSVSIILDCGAQFTAHFWKSFQKGLGTKVNLNTVFHPQTD 2555
            T +    A+LY+  I+RLHG   +I+ D G QFT+ FW++    LGT++  +T FHPQT 
Sbjct: 475  TYNGAKLAELYMTHIIRLHGVPKAIVSDRGPQFTSRFWENLHDLLGTELFFSTAFHPQTG 534

Query: 2556 GHKEQTI*TLEDILRACV 2609
            G  E+T   LED+LRACV
Sbjct: 535  GQTERTNQILEDMLRACV 552



 Score =  139 bits (350), Expect(5) = e-122
 Identities = 81/182 (44%), Positives = 107/182 (58%)
 Frame = +1

Query: 1132 GVKVGFQKIEAVKN*PQTYLNLRDKKFLRSGMLLQALLEGFYSILDSLIRLTQKKVKFQW 1311
            GV V    ++ V N  Q       + FL      +  +E F  I   + +L +K+ KF+W
Sbjct: 66   GVAVNPSNVQNVLNGKQPQSVPEVRSFLGLAGYYRRFIENFSRIARPMTQLLKKEQKFEW 125

Query: 1312 PDA*EHSFEELKMRLTFFLVLTLSEGTYGFVVYYDALGVGHECIIMQHGKVIAYASRQLK 1491
              A E SF+ELK RLT   VL + +   GF +Y DA   G  C++MQ GKV+AYASRQL+
Sbjct: 126  STACEASFQELKRRLTTAPVLVMPDTRKGFDIYCDASHHGLGCVLMQDGKVVAYASRQLR 185

Query: 1492 TYEKNYLTHNLELIVMVFTLKI*RYYLYGVHIDIFIDHKSLQYIFKQRKLNLKQNRRLEL 1671
             +E NY TH+LEL  +V  LKI R+YL G   +I+ DHKSL+Y F Q  LNL+Q R LEL
Sbjct: 186  PHEVNYPTHDLELAAVVHALKIWRHYLIGNQCEIYTDHKSLKYFFTQPDLNLRQRRWLEL 245

Query: 1672 KK 1677
             K
Sbjct: 246  IK 247



 Score =  107 bits (268), Expect(5) = e-122
 Identities = 49/115 (42%), Positives = 76/115 (66%)
 Frame = +2

Query: 2624 NWDDCFTLIEFVYNNSYHTSIKMTPLKALYGQRCRSLIDWFEVGETELLRLDLVYQVMEK 2803
            NW+ C    EF YNNSY  S++M+P +ALYG++CR+ + W EVGE +     ++ +  + 
Sbjct: 558  NWEKCLAFAEFSYNNSYQASLQMSPFEALYGRKCRTPLFWSEVGERQFFGPSIINEAQQN 617

Query: 2804 VKLIQEHLKIAWSIQKSYSNVRCTDLEFQVDN*VFMKVLPIKGVMRFEKKGKLSP 2968
            V LI++ LK A S  KSY++ R  +L F+V + V++KV P++G  RF+  GKL+P
Sbjct: 618  VDLIRKRLKEAQSRLKSYADRRRRELSFEVGDFVYLKVSPLRGTRRFQVHGKLAP 672



 Score = 50.8 bits (120), Expect(5) = e-122
 Identities = 24/45 (53%), Positives = 31/45 (68%)
 Frame = +1

Query: 2956 KTQSRYI*PYKILRKIDQVSYELELPQDLIIVHLVFHVSMFRKCV 3090
            K   RYI PYKIL +  +V+Y+LELP  L  +H VFHVS  +KC+
Sbjct: 669  KLAPRYIGPYKILARRGEVAYQLELPPQLSDMHDVFHVSQLKKCL 713



 Score = 44.3 bits (103), Expect(5) = e-122
 Identities = 19/34 (55%), Positives = 26/34 (76%)
 Frame = +3

Query: 942  YFDLLIIVFIDNILIYSRSEVDHIEHLRIVLQTL 1043
            Y D  ++VFID+ILIYS++E  H +HLR+VL  L
Sbjct: 3    YLDKFVVVFIDDILIYSKNEEAHAQHLRMVLDKL 36



 Score = 62.0 bits (149), Expect = 2e-06
 Identities = 30/63 (47%), Positives = 41/63 (65%)
 Frame = +2

Query: 1055 KLYAKNFKCEFWLKSMAFLGHLILEKA*RLVFRKLRQ*RISPRPTSISEIRNFLGLACYY 1234
            +LY K  KCEFWLK +AFLGH++ E    +    ++      +P S+ E+R+FLGLA YY
Sbjct: 40   RLYVKFSKCEFWLKEVAFLGHVLSEGGVAVNPSNVQNVLNGKQPQSVPEVRSFLGLAGYY 99

Query: 1235 RRF 1243
            RRF
Sbjct: 100  RRF 102


>gb|EOY08454.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
          Length = 1400

 Score =  255 bits (652), Expect(3) = e-119
 Identities = 120/212 (56%), Positives = 155/212 (73%)
 Frame = +3

Query: 1974 TRGDDGTLRYRSRLCIPYVDGLKEKIMEKIHNSRYSIHPGYTKMYHNLNEIYWLNDMKRN 2153
            T+G DG LRY +RL +P  DGL+ +I+E+ H   Y +HPG TKMY +L E+YW  ++KR+
Sbjct: 1005 TKGTDGVLRYGTRLYVPDGDGLRREILEEAHMVAYVVHPGATKMYQDLKEVYWWEELKRD 1064

Query: 2154 IEDFIDKCSNCQ*VKAE*QRPGGLAQNINIPV*K*EMINMDFIAGLPRSS*RHDLIWVIV 2333
            + +F+ KC  CQ VKAE Q+P GL Q + +P  K E I MDF+ GLPR+S  +D IW++V
Sbjct: 1065 VAEFVSKCLVCQQVKAEHQKPAGLLQPLPVPEWKWEHIAMDFVTGLPRTSGGYDSIWIVV 1124

Query: 2334 DRLTKSAHFLPVKTTDSAEDYAKLYIQEIVRLHGTSVSIILDCGAQFTAHFWKSFQKGLG 2513
            DRLTKSAHFLPVKTT  A  YA++Y+ EIVR HG  +SI+ D GAQFT  FW   Q+ LG
Sbjct: 1125 DRLTKSAHFLPVKTTYGAAQYARVYVDEIVRQHGIPISIVFDRGAQFTGRFWGKLQEALG 1184

Query: 2514 TKVNLNTVFHPQTDGHKEQTI*TLEDILRACV 2609
            TK++ +T FHPQTDG  E+TI TLED+LRACV
Sbjct: 1185 TKLDFSTAFHPQTDGQSERTIQTLEDMLRACV 1216



 Score =  117 bits (293), Expect(3) = e-119
 Identities = 93/296 (31%), Positives = 142/296 (47%), Gaps = 7/296 (2%)
 Frame = +1

Query: 1129 EGVKVGFQKIEAVKN*PQTYLNLRDKKFLRSGMLLQALLEGFYSILDSLIRLTQKKVKFQ 1308
            EG++V  +KIE V+  P+       + F+      +  ++ F  I+  L +LT+K  KF+
Sbjct: 756  EGIQVDTKKIEVVEKWPRPTSVTEIRSFVGLAGYYRRFVKDFSKIVAPLTKLTRKDTKFE 815

Query: 1309 WPDA*EHSFEELKMRLTFFLVLTLSEGTYGFVVYYDALGVGHECIIMQHGKVIAYASRQL 1488
            W DA E+SFE+LK  LT   VL+LS                                 QL
Sbjct: 816  WSDACENSFEKLKACLTTAPVLSLS---------------------------------QL 842

Query: 1489 KTYEKNYLTHNLELIVMVFTLKI*RYYLYGVHIDIFIDHKSLQYIFKQRKLNLKQNRRLE 1668
            K +E+NY  H+LE+  +VF LKI R+YLYG   +I+ DHKSL+YIF+QR LNL+Q R +E
Sbjct: 843  KRHEQNYPIHDLEMAAIVFALKIWRHYLYGETCEIYTDHKSLKYIFQQRDLNLRQRRWME 902

Query: 1669 LKK----TMM---*MSSIIQEK*ICS*CS*SAIDGNLSPC*RKNRTMTKEIHRLTSLEV* 1827
            L K    T++     +S++ +             G+L+      R++ +EIH L  + V 
Sbjct: 903  LLKDYDCTILYHPGKASVVAD------ALGQKSMGSLAHISICRRSLVREIHSLGDMGVR 956

Query: 1828 LLDTEDGDMFV*NRFESSLVAEVKEK*FNDPYLLQLKEGIHNHKTTTFKQGEMMVL 1995
            L   E   +    R    L+  +KE    D ++++  E     K   F +G   VL
Sbjct: 957  LEVAETNALLAHFRVRPILMDRIKEAQSKDEFVIKALEDPRGRKGKMFTKGTDGVL 1012



 Score =  109 bits (272), Expect(3) = e-119
 Identities = 61/131 (46%), Positives = 80/131 (61%)
 Frame = +2

Query: 2612 DFKGNWDDCFTLIEFVYNNSYHTSIKMTPLKALYGQRCRSLIDWFEVGETELLRLDLVYQ 2791
            D    W+    L+EF YNNS+ TSI+M P +ALYG+RCRS I W EVGE +LL  +LV  
Sbjct: 1218 DLGVRWEQYLPLVEFAYNNSFQTSIQMAPFEALYGRRCRSPIGWLEVGERKLLGPELVQD 1277

Query: 2792 VMEKVKLIQEHLKIAWSIQKSYSNVRCTDLEFQVDN*VFMKVLPIKGVMRFEKKGKLSPD 2971
              EK  +I++ +  A S QKSY++ R  DLEFQV + VF+KV P         KGK +PD
Sbjct: 1278 ATEKTHMIRQTMLTAQSRQKSYADNRRRDLEFQVGDHVFLKVSP--------TKGKYNPD 1329

Query: 2972 IFNHTRSYERL 3004
              +H   YE +
Sbjct: 1330 P-SHVIRYETI 1339



 Score =  224 bits (571), Expect = 2e-55
 Identities = 137/372 (36%), Positives = 201/372 (54%)
 Frame = +2

Query: 140  NLVELEMVDFDIIMNMDWLSSYYVSLGCRTKIVSFEFPSKPIIE*KDDAVSLIGRFVSYL 319
            NLV L+ +DFD+I+ M+WLS  + S+ C  K+V F+FP +P    + D  +     +S +
Sbjct: 500  NLVVLDTLDFDVILGMNWLSPCHASVDCYHKLVRFDFPGEPSFSIQGDRSNAPTNLISVI 559

Query: 320  KVRKMISKEYIYYLVLVRDTDTQTPTF*SMPIVSEFLEVFSKDLPKVLSDREIKFRLDLL 499
              R+++ +  I YL +V+D+  +      + +V EF++VF  +LP +  +RE++F +DL+
Sbjct: 560  SARRLLRQGCIGYLAVVKDSQAKIGDVTQVSVVKEFMDVFPDELPGLPPEREVEFCIDLI 619

Query: 500  SDTKTIPISPYRMALIELKELKSVKISL**EIY*AKCLTLGCTVLFVRKKYGSIHMYIDY 679
             DT+ I I PYRMA  ELKELK     L         L  G    F+R            
Sbjct: 620  PDTRPISIPPYRMAPAELKELKDQLEDL---------LDKG----FIRPS---------- 656

Query: 680  HQLNKVTIKNKYSLSRIDDLFEQLQGV*CYSKINIILGYHQFKVKRVDILKIAFKTRYRH 859
              LNKVT+KNKY L RIDDLF+QLQG  C+SKI++  GYHQ +++  DI K AF+TRY H
Sbjct: 657  --LNKVTVKNKYPLPRIDDLFDQLQGAQCFSKIDLRSGYHQLRIRNEDIPKTAFRTRYGH 714

Query: 860  FEFCVISFGLTNAPAVFY*SYEQDLQALL*SFDYCVY**YSNLFS**G*SYRTSQNSIAN 1039
            +EF V+SFGLTNAP  F                                           
Sbjct: 715  YEFLVMSFGLTNAPVAF------------------------------------------- 731

Query: 1040 TVQDLKLYAKNFKCEFWLKSMAFLGHLILEKA*RLVFRKLRQ*RISPRPTSISEIRNFLG 1219
                + L  + FK   +L ++AFLGH++ ++  ++  +K+      PRPTS++EIR+F+G
Sbjct: 732  ----MDLMNRVFKP--YLDNVAFLGHVVSKEGIQVDTKKIEVVEKWPRPTSVTEIRSFVG 785

Query: 1220 LACYYRRF*RVF 1255
            LA YYRRF + F
Sbjct: 786  LAGYYRRFVKDF 797


>gb|EOY20275.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
          Length = 562

 Score =  231 bits (590), Expect(3) = e-104
 Identities = 118/245 (48%), Positives = 154/245 (62%), Gaps = 33/245 (13%)
 Frame = +3

Query: 1974 TRGDDGTLRYRSRLCIPYVDGLKEKIMEKIHNSRYSIHPGYTKMYHNLNEIY-------- 2129
            T+G DG LRY +RL +P  DGL+ +I+E+ H + Y +HPG TKMY +L E+         
Sbjct: 150  TKGTDGVLRYGTRLYVPDGDGLRREILEEAHMAAYVVHPGATKMYQDLKEVXXXXXXXXX 209

Query: 2130 -------------------------WLNDMKRNIEDFIDKCSNCQ*VKAE*QRPGGLAQN 2234
                                     W   +KR++ +F+ KC  CQ VKAE Q+P GL Q 
Sbjct: 210  XXXXXXXXXXXXXXXXXXXXXXXXXWWEGLKRDVAEFVSKCLVCQQVKAEHQKPAGLLQP 269

Query: 2235 INIPV*K*EMINMDFIAGLPRSS*RHDLIWVIVDRLTKSAHFLPVKTTDSAEDYAKLYIQ 2414
            +  P  K E I MDF+ GLPR+S  +D IW+++DRLTKSAHFLPVKTT  A  YA++Y+ 
Sbjct: 270  LPAPEWKWEHIAMDFVTGLPRTSGGYDSIWIVMDRLTKSAHFLPVKTTYGAAQYARVYVD 329

Query: 2415 EIVRLHGTSVSIILDCGAQFTAHFWKSFQKGLGTKVNLNTVFHPQTDGHKEQTI*TLEDI 2594
            EIVRLHG  +SI+ D  AQFT+ FW   Q+ LGTK++ +T FHPQTDG  E+TI TLED+
Sbjct: 330  EIVRLHGIPISIVSDREAQFTSRFWGKLQEALGTKLDFSTAFHPQTDGQSERTIQTLEDM 389

Query: 2595 LRACV 2609
            LRACV
Sbjct: 390  LRACV 394



 Score =  130 bits (327), Expect(3) = e-104
 Identities = 66/119 (55%), Positives = 82/119 (68%)
 Frame = +2

Query: 2612 DFKGNWDDCFTLIEFVYNNSYHTSIKMTPLKALYGQRCRSLIDWFEVGETELLRLDLVYQ 2791
            D    W+    L+EF YNNS+ TSI+M P +ALYG+RCRS I W EVGE +LL  +LV  
Sbjct: 396  DLGVRWEQYLPLVEFAYNNSFQTSIQMAPFEALYGRRCRSPIGWLEVGERKLLGPELVQD 455

Query: 2792 VMEKVKLIQEHLKIAWSIQKSYSNVRCTDLEFQVDN*VFMKVLPIKGVMRFEKKGKLSP 2968
              EK+ +I + +  A S QKSY++ R  DLEFQV + VF+KV P KGVMRF KKGKLSP
Sbjct: 456  ATEKIHMISQKMLTAQSRQKSYADNRRRDLEFQVGDHVFLKVSPTKGVMRFGKKGKLSP 514



 Score = 67.0 bits (162), Expect(3) = e-104
 Identities = 52/160 (32%), Positives = 82/160 (51%), Gaps = 4/160 (2%)
 Frame = +1

Query: 1528 LIVMVFTLKI*RYYLYGVHIDIFIDHKSLQYIFKQRKLNLKQNRRLELKK----TMM*MS 1695
            +  +VF LKI R+YLYG   +I+ DHKSL+YIF+QR LNL+Q R +EL K    T++   
Sbjct: 1    MAAIVFALKIWRHYLYGETCEIYTDHKSLKYIFQQRDLNLRQRRWMELLKDYDCTILYHP 60

Query: 1696 SIIQEK*ICS*CS*SAIDGNLSPC*RKNRTMTKEIHRLTSLEV*LLDTEDGDMFV*NRFE 1875
               +   +    S  ++ G+L+      R++ +EIH L  + V L   E   +    R  
Sbjct: 61   G--KANVVADALSRKSM-GSLAHISIGRRSLVREIHSLGDIGVRLEVAETNALLAHFRVR 117

Query: 1876 SSLVAEVKEK*FNDPYLLQLKEGIHNHKTTTFKQGEMMVL 1995
              L+ ++KE    D ++++  E     K   F +G   VL
Sbjct: 118  PILMDKIKEAQSKDEFVIKALEDPRGRKGKMFTKGTDGVL 157


>gb|EOY08659.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
          Length = 937

 Score =  256 bits (653), Expect(3) = e-100
 Identities = 121/212 (57%), Positives = 156/212 (73%)
 Frame = +3

Query: 1974 TRGDDGTLRYRSRLCIPYVDGLKEKIMEKIHNSRYSIHPGYTKMYHNLNEIYWLNDMKRN 2153
            T+G DG LRY +RL +P  DGL+ +I+E+ H + Y IHPG TKMY +L E+YW   +KR+
Sbjct: 464  TKGTDGVLRYGTRLYVPDSDGLRREILEEAHMAAYVIHPGATKMYQDLKEVYWWEGLKRD 523

Query: 2154 IEDFIDKCSNCQ*VKAE*QRPGGLAQNINIPV*K*EMINMDFIAGLPRSS*RHDLIWVIV 2333
            + +F+ KC  CQ VKAE Q+P GL Q + +P  K E I MDF+ GLPR++  +D IW++V
Sbjct: 524  VAEFVSKCLVCQQVKAEHQKPAGLLQPLPVPEWKWEHIAMDFVTGLPRTNGGYDSIWIVV 583

Query: 2334 DRLTKSAHFLPVKTTDSAEDYAKLYIQEIVRLHGTSVSIILDCGAQFTAHFWKSFQKGLG 2513
            DRLTKSAHFLPVKTT  A  YA++Y+ EIVRLHG  +SI+ D GAQFT+ FW   Q+ LG
Sbjct: 584  DRLTKSAHFLPVKTTYGAAQYARVYVDEIVRLHGIPISIVSDRGAQFTSRFWGKLQEALG 643

Query: 2514 TKVNLNTVFHPQTDGHKEQTI*TLEDILRACV 2609
            TK++ +T FHPQTDG  E TI TLED+LRACV
Sbjct: 644  TKLDFSTAFHPQTDGQSEWTIQTLEDMLRACV 675



 Score =  129 bits (325), Expect(3) = e-100
 Identities = 65/119 (54%), Positives = 82/119 (68%)
 Frame = +2

Query: 2612 DFKGNWDDCFTLIEFVYNNSYHTSIKMTPLKALYGQRCRSLIDWFEVGETELLRLDLVYQ 2791
            D    W+    L+EF YNNS+ TSI+M P +ALYG+RCRS I W EVGE +LL  + V  
Sbjct: 677  DLGVRWEQYLPLVEFAYNNSFQTSIQMAPFEALYGRRCRSPIGWLEVGERKLLGPEFVQD 736

Query: 2792 VMEKVKLIQEHLKIAWSIQKSYSNVRCTDLEFQVDN*VFMKVLPIKGVMRFEKKGKLSP 2968
              EK+ +I++ +  A S QKSY++ R  DLEFQV + VF+KV P KGVMRF KKGKLSP
Sbjct: 737  ATEKIHMIRQRMLTAQSRQKSYADNRRRDLEFQVGDHVFLKVSPTKGVMRFGKKGKLSP 795



 Score = 30.4 bits (67), Expect(3) = e-100
 Identities = 35/127 (27%), Positives = 55/127 (43%), Gaps = 4/127 (3%)
 Frame = +1

Query: 1627 KQRKLNLKQNRRLELKKTMM*MSSIIQE----K*ICS*CS*SAIDGNLSPC*RKNRTMTK 1794
            KQR LNL+Q R +EL K      +I+        +    S  ++ G+L+      R++ K
Sbjct: 348  KQRDLNLRQRRWMELLKDYD--CTILHHPGKANVVADALSRKSM-GSLAHISIGRRSLVK 404

Query: 1795 EIHRLTSLEV*LLDTEDGDMFV*NRFESSLVAEVKEK*FNDPYLLQLKEGIHNHKTTTFK 1974
            EIH L  + V L   E   +    R    L+  +KE    D ++++  E     K   F 
Sbjct: 405  EIHSLGDIGVRLEVAETNALLAHFRVRPILMDRIKEAQSKDEFVIKALEDPRGKKGKMFT 464

Query: 1975 QGEMMVL 1995
            +G   VL
Sbjct: 465  KGTDGVL 471



 Score = 67.4 bits (163), Expect = 4e-08
 Identities = 32/55 (58%), Positives = 43/55 (78%)
 Frame = +3

Query: 909  FIDLMNRIFKPYFDLLIIVFIDNILIYSRSEVDHIEHLRIVLQTLCRISSFTQKI 1073
            F+DLMNR+FKPY D  ++VFID+ILIYS+S  +H +HL+IVLQ L R   F +K+
Sbjct: 256  FMDLMNRVFKPYLDKFVVVFIDDILIYSKSREEHEQHLKIVLQIL-REHRFFEKL 309


>gb|EOY08667.1| Retrotransposon protein, Ty3-gypsy subclass, putative [Theobroma
            cacao]
          Length = 521

 Score =  257 bits (657), Expect(3) = 1e-98
 Identities = 121/212 (57%), Positives = 157/212 (74%)
 Frame = +3

Query: 1974 TRGDDGTLRYRSRLCIPYVDGLKEKIMEKIHNSRYSIHPGYTKMYHNLNEIYWLNDMKRN 2153
            T+G DG LRY +RL +P  DGL+ +I+E+ H + Y +HPG TKMY +L E+YW   +KR+
Sbjct: 76   TKGTDGVLRYGTRLYVPDGDGLRREILEEAHMAAYVVHPGATKMYQDLKEVYWWEGLKRD 135

Query: 2154 IEDFIDKCSNCQ*VKAE*QRPGGLAQNINIPV*K*EMINMDFIAGLPRSS*RHDLIWVIV 2333
            + +F+ KC  CQ VKAE Q+P GL Q + +P  K E I MDF+ GLPR+S  +D IW++V
Sbjct: 136  VAEFVSKCLVCQQVKAEHQKPAGLLQPLPVPEWKWEHIAMDFVTGLPRTSGGYDSIWIVV 195

Query: 2334 DRLTKSAHFLPVKTTDSAEDYAKLYIQEIVRLHGTSVSIILDCGAQFTAHFWKSFQKGLG 2513
            DRLTKSAHFLPVKTT  A  YA++Y+ EIVRLHG  +SI+ D GAQFT+ FW   Q+ LG
Sbjct: 196  DRLTKSAHFLPVKTTYGAAQYARVYVDEIVRLHGIPISIVSDRGAQFTSRFWGKLQEALG 255

Query: 2514 TKVNLNTVFHPQTDGHKEQTI*TLEDILRACV 2609
            TK++ +T FHPQTDG  E+TI TLED+LRACV
Sbjct: 256  TKLDFSTAFHPQTDGQSERTIQTLEDMLRACV 287



 Score =  129 bits (324), Expect(3) = 1e-98
 Identities = 65/119 (54%), Positives = 82/119 (68%)
 Frame = +2

Query: 2612 DFKGNWDDCFTLIEFVYNNSYHTSIKMTPLKALYGQRCRSLIDWFEVGETELLRLDLVYQ 2791
            D    W+    L+EF YNNS+ TSI+M P +ALYG+RCRS I W EVGE +LL  +LV  
Sbjct: 289  DLGVRWEQYLPLVEFAYNNSFQTSIQMAPFEALYGRRCRSPIGWLEVGERKLLGPELVQD 348

Query: 2792 VMEKVKLIQEHLKIAWSIQKSYSNVRCTDLEFQVDN*VFMKVLPIKGVMRFEKKGKLSP 2968
              EK+ +I++ +  A S  KSY++ R  DLEFQV + VF+KV P KGVMRF KKGKLSP
Sbjct: 349  ATEKIHMIRQRMLTAQSRHKSYADNRRRDLEFQVGDHVFLKVSPTKGVMRFGKKGKLSP 407



 Score = 25.0 bits (53), Expect(3) = 1e-98
 Identities = 18/72 (25%), Positives = 32/72 (44%)
 Frame = +1

Query: 1780 RTMTKEIHRLTSLEV*LLDTEDGDMFV*NRFESSLVAEVKEK*FNDPYLLQLKEGIHNHK 1959
            R++ +EIH L  + V L   E   +    R    L+ ++KE    + ++++  E     K
Sbjct: 12   RSLVREIHSLGDIGVRLEVAETNALLAHFRVRPILMDKIKEAQSKNEFVIKALEDPQGRK 71

Query: 1960 TTTFKQGEMMVL 1995
               F +G   VL
Sbjct: 72   GKMFTKGTDGVL 83


>gb|EOY03326.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
          Length = 1447

 Score =  254 bits (649), Expect(2) = 3e-97
 Identities = 120/212 (56%), Positives = 156/212 (73%)
 Frame = +3

Query: 1974 TRGDDGTLRYRSRLCIPYVDGLKEKIMEKIHNSRYSIHPGYTKMYHNLNEIYWLNDMKRN 2153
            T+G DG LRY +RL +P  DGL+ +I+E+ H + Y +HPG TKMY +L E+YW   +KR+
Sbjct: 1002 TKGTDGVLRYGTRLYVPDGDGLRREILEEAHMAAYVVHPGATKMYQDLKEVYWWEGLKRD 1061

Query: 2154 IEDFIDKCSNCQ*VKAE*QRPGGLAQNINIPV*K*EMINMDFIAGLPRSS*RHDLIWVIV 2333
            + +F+ KC  CQ VKAE Q+P GL Q + +P  K E I MDF+ GLPR+S  +D IW++V
Sbjct: 1062 VAEFVSKCLVCQQVKAEHQKPAGLLQPLPVPEWKWEHIAMDFVTGLPRTSGGYDSIWIVV 1121

Query: 2334 DRLTKSAHFLPVKTTDSAEDYAKLYIQEIVRLHGTSVSIILDCGAQFTAHFWKSFQKGLG 2513
            DRLTKSAHFLPVKTT  A  YA++Y+ EIVRLHG  +SI+ D GAQFT+ FW   Q+ LG
Sbjct: 1122 DRLTKSAHFLPVKTTYGAAQYARVYVDEIVRLHGIPISIVSDRGAQFTSRFWGKLQEALG 1181

Query: 2514 TKVNLNTVFHPQTDGHKEQTI*TLEDILRACV 2609
            TK++ +T FHPQTDG  E+TI TLE +LRACV
Sbjct: 1182 TKLDFSTAFHPQTDGQSERTIQTLEAMLRACV 1213



 Score =  131 bits (329), Expect(2) = 3e-97
 Identities = 66/119 (55%), Positives = 83/119 (69%)
 Frame = +2

Query: 2612 DFKGNWDDCFTLIEFVYNNSYHTSIKMTPLKALYGQRCRSLIDWFEVGETELLRLDLVYQ 2791
            D    W+    L+EF YNNS+ TSI+M P +ALYG+RCRS I W EVGE +LL  +LV  
Sbjct: 1215 DLGVRWEQYLPLVEFAYNNSFQTSIQMAPFEALYGRRCRSPIGWLEVGERKLLGPELVQD 1274

Query: 2792 VMEKVKLIQEHLKIAWSIQKSYSNVRCTDLEFQVDN*VFMKVLPIKGVMRFEKKGKLSP 2968
              EK+ +I++ +  A S QKSY++ R  DLEFQV + VF+KV P KGVMRF KKGKLSP
Sbjct: 1275 ATEKIHMIRQRMLTAQSRQKSYADNRRRDLEFQVGDHVFLKVSPTKGVMRFGKKGKLSP 1333



 Score =  291 bits (746), Expect = 9e-76
 Identities = 160/373 (42%), Positives = 237/373 (63%), Gaps = 1/373 (0%)
 Frame = +2

Query: 140  NLVELEMVDFDIIMNMDWLSSYYVSLGCRTKIVSFEFPSKPIIE*KDDAVSLIGRFVSYL 319
            NLV L+ +DFD+I+ M+WLS  + S+ C  K+V F+FP +P    + D  +     +S +
Sbjct: 422  NLVVLDTLDFDVILGMNWLSPCHASVDCYHKLVRFDFPGEPSFSIQGDRSNAPTNLISVI 481

Query: 320  KVRKMISKEYIYYLVLVRDTDTQTPTF*SMPIVSEFLEVFSKDLPKVLSDREIKFRLDLL 499
              R+++ +  I YL +V+D+  +      + +V EF++VF ++LP +  +RE++F +DL+
Sbjct: 482  SARRLLRQGCIGYLAVVKDSQAKIGDVTQVSVVKEFVDVFPEELPSLPPEREVEFCIDLI 541

Query: 500  SDTKTIPISPYRMALIELKELKSVKISL**EIY*AKCLT-LGCTVLFVRKKYGSIHMYID 676
             DT+ I I PYRMA  ELKELK     L  + +    ++  G  VLFV+KK GS+ + ID
Sbjct: 542  PDTRPISIPPYRMAPAELKELKDQLEDLLDKGFIRPSVSPWGAPVLFVKKKDGSLRLCID 601

Query: 677  YHQLNKVTIKNKYSLSRIDDLFEQLQGV*CYSKINIILGYHQFKVKRVDILKIAFKTRYR 856
            Y QLNKVT+KNKY L RIDDLF+QLQG  C+SKI++  GYHQ +++  DI K AF+TRY 
Sbjct: 602  YRQLNKVTVKNKYPLPRIDDLFDQLQGAQCFSKIDLRSGYHQLRIRNEDIPKTAFRTRYG 661

Query: 857  HFEFCVISFGLTNAPAVFY*SYEQDLQALL*SFDYCVY**YSNLFS**G*SYRTSQNSIA 1036
            H+EF V+SFGLTNAPA F     +  +  L  F   V+     ++S     +      + 
Sbjct: 662  HYEFLVMSFGLTNAPAAFMDLMNRVFKPYLDKF-VVVFIDDILIYSKSREEHEQHLKIVL 720

Query: 1037 NTVQDLKLYAKNFKCEFWLKSMAFLGHLILEKA*RLVFRKLRQ*RISPRPTSISEIRNFL 1216
              +++ +LYAK  KCEFWL+S+AFLGH++ ++  R+  +K+      PRPTS+SEIR+F+
Sbjct: 721  QILREHRLYAKFSKCEFWLESVAFLGHVVSKEGIRVDTKKIEAVEKWPRPTSVSEIRSFV 780

Query: 1217 GLACYYRRF*RVF 1255
            GLA YYRRF + F
Sbjct: 781  GLAGYYRRFVKDF 793



 Score =  172 bits (435), Expect(2) = 2e-42
 Identities = 91/183 (49%), Positives = 126/183 (68%)
 Frame = +1

Query: 1129 EGVKVGFQKIEAVKN*PQTYLNLRDKKFLRSGMLLQALLEGFYSILDSLIRLTQKKVKFQ 1308
            EG++V  +KIEAV+  P+       + F+      +  ++ F  I+  L +LT+K  KF+
Sbjct: 752  EGIRVDTKKIEAVEKWPRPTSVSEIRSFVGLAGYYRRFVKDFSKIVAPLTKLTRKDTKFE 811

Query: 1309 WPDA*EHSFEELKMRLTFFLVLTLSEGTYGFVVYYDALGVGHECIIMQHGKVIAYASRQL 1488
            W DA E+SFE+LK  LT   VL+L +GT G+ ++ DA GVG  C++MQHGKVIAYASRQL
Sbjct: 812  WSDACENSFEKLKACLTTAPVLSLPQGTGGYTMFCDASGVGLGCVLMQHGKVIAYASRQL 871

Query: 1489 KTYEKNYLTHNLELIVMVFTLKI*RYYLYGVHIDIFIDHKSLQYIFKQRKLNLKQNRRLE 1668
            K +E+NY  H+LE+  +VF LKI R+YLYG   +I+ DHKSL+YIF+QR LNL+Q R +E
Sbjct: 872  KRHEQNYPIHDLEMAAIVFALKIWRHYLYGETCEIYTDHKSLKYIFQQRDLNLRQCRWME 931

Query: 1669 LKK 1677
            L K
Sbjct: 932  LLK 934



 Score = 30.4 bits (67), Expect(2) = 2e-42
 Identities = 14/20 (70%), Positives = 16/20 (80%)
 Frame = +2

Query: 1709 KNKYVADALSRRSMGILAHV 1768
            K   VADALSR+SMG LAH+
Sbjct: 946  KANVVADALSRKSMGSLAHI 965


>gb|EOY21678.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
          Length = 448

 Score =  257 bits (657), Expect(2) = 5e-97
 Identities = 121/212 (57%), Positives = 157/212 (74%)
 Frame = +3

Query: 1974 TRGDDGTLRYRSRLCIPYVDGLKEKIMEKIHNSRYSIHPGYTKMYHNLNEIYWLNDMKRN 2153
            T+G DG LRY +RL +P  DGL+ +I+E+ H + Y +HPG TKMY +L E+YW   +KR+
Sbjct: 3    TKGTDGVLRYGTRLYVPDGDGLRREILEEAHMAAYVVHPGATKMYQDLKEVYWWEGLKRD 62

Query: 2154 IEDFIDKCSNCQ*VKAE*QRPGGLAQNINIPV*K*EMINMDFIAGLPRSS*RHDLIWVIV 2333
            + +F+ KC  CQ VKAE Q+P GL Q + +P  K E I MDF+ GLPR+S  +D IW++V
Sbjct: 63   VAEFVSKCLVCQQVKAEHQKPAGLLQPLPVPEWKWEHIAMDFVTGLPRTSGGYDSIWIVV 122

Query: 2334 DRLTKSAHFLPVKTTDSAEDYAKLYIQEIVRLHGTSVSIILDCGAQFTAHFWKSFQKGLG 2513
            DRLTKSAHFLPVKTT  A  YA++Y+ EIVRLHG  +SI+ D GAQFT+ FW   Q+ LG
Sbjct: 123  DRLTKSAHFLPVKTTYGAAQYARVYVDEIVRLHGIPISIVSDRGAQFTSRFWGKLQEALG 182

Query: 2514 TKVNLNTVFHPQTDGHKEQTI*TLEDILRACV 2609
            TK++ +T FHPQTDG  E+TI TLED+LRACV
Sbjct: 183  TKLDFSTAFHPQTDGQSERTIQTLEDMLRACV 214



 Score =  127 bits (319), Expect(2) = 5e-97
 Identities = 64/119 (53%), Positives = 82/119 (68%)
 Frame = +2

Query: 2612 DFKGNWDDCFTLIEFVYNNSYHTSIKMTPLKALYGQRCRSLIDWFEVGETELLRLDLVYQ 2791
            D    W+    L+EF YNNS+ TSI+M P +ALYG+RCRS I W EVGE +LL  +LV  
Sbjct: 216  DLGVRWEQYLPLVEFAYNNSFQTSIQMAPFEALYGRRCRSPIGWLEVGERKLLGPELVQD 275

Query: 2792 VMEKVKLIQEHLKIAWSIQKSYSNVRCTDLEFQVDN*VFMKVLPIKGVMRFEKKGKLSP 2968
              EK+ +I++ +  A S QKSY++ R   LEFQV + VF+KV P KG+MRF KKGKLSP
Sbjct: 276  ATEKIHMIRQRMLTAQSRQKSYADNRRRYLEFQVGDHVFLKVSPTKGIMRFGKKGKLSP 334


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