BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atropa21_contig00025869
         (445 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006362709.1| PREDICTED: putative ribonuclease H protein A...    48   2e-06
ref|XP_006345710.1| PREDICTED: putative ribonuclease H protein A...    44   4e-06
emb|CAN80245.1| hypothetical protein VITISV_031023 [Vitis vinifera]    38   7e-06

>ref|XP_006362709.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
           tuberosum]
          Length = 217

 Score = 48.1 bits (113), Expect(2) = 2e-06
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
 Frame = +1

Query: 139 QLWSLLFNFFKTSLKNLWSTACVRWVLCV-RNSKCFEGKKTFVQLLKFKCLWFLAFWCKG 315
           Q W+   N  K   +     AC+ W +   RN +CFEGK+  +Q +K  CL    FWCK 
Sbjct: 142 QCWNRDGNAGKNEKRWRIVPACIWWTIWKERNQRCFEGKQNNIQKIKTNCLGLYYFWCKQ 201

Query: 316 LDVNYEDSMLNFIN 357
           + +   +++ N I+
Sbjct: 202 VVIGDAENVFNIID 215



 Score = 28.9 bits (63), Expect(2) = 2e-06
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 78  CYLCKTEEECCSHLFLH 128
           CYLC+ + E  +HLFLH
Sbjct: 96  CYLCEEQVETVNHLFLH 112


>ref|XP_006345710.1| PREDICTED: putative ribonuclease H protein At1g65750-like isoform
           X2 [Solanum tuberosum]
          Length = 284

 Score = 43.5 bits (101), Expect(2) = 4e-06
 Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
 Frame = +1

Query: 175 SLKNLWST--ACVRW-VLCVRNSKCFEGKKTFVQLLKFKCLWFLAFWCKGLDVNYEDSML 345
           S K  W    +C+ W V   RNS+CF+ +   +  +K+ C+  L FWCK L +   D ++
Sbjct: 219 SQKRWWRLIPSCIWWSVWKERNSRCFDNRSNSIHKVKWNCIVSLLFWCKQLCIVDTDQIV 278

Query: 346 NFINS 360
           + I S
Sbjct: 279 DLIGS 283



 Score = 32.7 bits (73), Expect(2) = 4e-06
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 42  IFERRGISMCIRCYLCKTEEECCSHLFLH 128
           + +++G  +  RC+LC    E  SHLFLH
Sbjct: 151 VLQKKGRQLVPRCFLCNLTSETNSHLFLH 179


>emb|CAN80245.1| hypothetical protein VITISV_031023 [Vitis vinifera]
          Length = 1636

 Score = 38.1 bits (87), Expect(2) = 7e-06
 Identities = 15/27 (55%), Positives = 19/27 (70%)
 Frame = +3

Query: 48   ERRGISMCIRCYLCKTEEECCSHLFLH 128
            +RRG S+  RC+LC +EEE   HL LH
Sbjct: 1503 QRRGFSLANRCFLCLSEEETVDHLLLH 1529



 Score = 37.0 bits (84), Expect(2) = 7e-06
 Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 25/103 (24%)
 Frame = +1

Query: 124  CTMARQLWSLLFNFF----------KTSL------------KNLWSTA--CVRW-VLCVR 228
            C   R LW+LLF+ F          KT+L            K  W  A  C+ W V   R
Sbjct: 1530 CVKTRDLWNLLFSLFGISWTLSCTVKTTLLGWNGGFVGKRRKKAWQMAPLCIFWSVWKER 1589

Query: 229  NSKCFEGKKTFVQLLKFKCLWFLAFWCKGLDVNYEDSMLNFIN 357
            N   F  +   +Q LK+  +  L FW +G       S+++F++
Sbjct: 1590 NRLAFGDEDLSLQRLKYSFVCNLWFWVRGSLAESHSSLVSFVD 1632