BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atropa21_contig00025428
         (472 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004236361.1| PREDICTED: DNA-directed RNA polymerase D sub...   313   2e-83
ref|XP_006351506.1| PREDICTED: DNA-directed RNA polymerases IV a...   310   1e-82
gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum...   305   4e-81
ref|XP_006364477.1| PREDICTED: DNA-directed RNA polymerases IV a...   291   5e-77
ref|XP_004245914.1| PREDICTED: DNA-directed RNA polymerase D sub...   285   6e-75
gb|ABG29321.1| DNA-directed RNA polymerase, putative [Solanum bu...   283   2e-74
emb|CBI21137.3| unnamed protein product [Vitis vinifera]              229   3e-58
ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D sub...   229   3e-58
gb|EOY29338.1| DNA-directed RNA polymerase isoform 3 [Theobroma ...   209   2e-52
gb|EOY29336.1| DNA-directed RNA polymerase isoform 1 [Theobroma ...   209   2e-52
gb|EXB86677.1| DNA-directed RNA polymerase D subunit 2a [Morus n...   207   1e-51
gb|EPS73521.1| hypothetical protein M569_01229, partial [Genlise...   205   6e-51
ref|XP_004288915.1| PREDICTED: DNA-directed RNA polymerase D sub...   205   6e-51
ref|XP_006442883.1| hypothetical protein CICLE_v10018562mg [Citr...   203   2e-50
ref|XP_004157128.1| PREDICTED: DNA-directed RNA polymerase D sub...   203   2e-50
ref|XP_004145500.1| PREDICTED: DNA-directed RNA polymerase D sub...   203   2e-50
ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putativ...   202   4e-50
gb|EMJ26641.1| hypothetical protein PRUPE_ppa000410mg [Prunus pe...   201   8e-50
ref|XP_003603295.1| DNA-directed RNA polymerase subunit beta [Me...   197   2e-48
ref|XP_002324332.2| DNA-directed RNA polymerase family protein [...   196   2e-48

>ref|XP_004236361.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a [Solanum
           lycopersicum]
          Length = 1217

 Score =  313 bits (801), Expect = 2e-83
 Identities = 148/157 (94%), Positives = 154/157 (98%)
 Frame = +2

Query: 2   FFEKYGLISHQINSYNDFINYGIQRVFASVGEIHVEPGYDPSKRGEGDWKHASIKFGKVS 181
           FFEKYGLISHQINSYNDFINYGIQRVF SVGEIHVEPGYDPSKRG+GDWKHAS+KFGKV+
Sbjct: 77  FFEKYGLISHQINSYNDFINYGIQRVFDSVGEIHVEPGYDPSKRGDGDWKHASVKFGKVT 136

Query: 182 LERPKFWAGEKFSVDGGKEYLDLWPRHARLQNMTYSARIMVETHVQVYTKKLVRSDKFKT 361
           LERPKFWAGEKFSVDGGKEYLDL PRHARLQNMTYSARIMVETHVQVYTKKLVRSDKFKT
Sbjct: 137 LERPKFWAGEKFSVDGGKEYLDLLPRHARLQNMTYSARIMVETHVQVYTKKLVRSDKFKT 196

Query: 362 GVERFVDKELEMEDKRDVLVGRIPVMVNSELCWMNGV 472
           GV+RFVDKE E+EDKRDVL+GRIPVMVNSELCWMNGV
Sbjct: 197 GVDRFVDKEWEVEDKRDVLIGRIPVMVNSELCWMNGV 233


>ref|XP_006351506.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
           [Solanum tuberosum]
          Length = 1217

 Score =  310 bits (794), Expect = 1e-82
 Identities = 146/157 (92%), Positives = 153/157 (97%)
 Frame = +2

Query: 2   FFEKYGLISHQINSYNDFINYGIQRVFASVGEIHVEPGYDPSKRGEGDWKHASIKFGKVS 181
           FFEKYGLISHQINSYNDFINYGIQRVF SVGEIHVEPGYDPSKRG+GDWKHAS+KFGKV+
Sbjct: 77  FFEKYGLISHQINSYNDFINYGIQRVFDSVGEIHVEPGYDPSKRGDGDWKHASVKFGKVT 136

Query: 182 LERPKFWAGEKFSVDGGKEYLDLWPRHARLQNMTYSARIMVETHVQVYTKKLVRSDKFKT 361
           LERPKFWAGEKFS DGGKEYLDL PRHARLQNMTYSARIMVETHVQVYTKKLVRSDKFKT
Sbjct: 137 LERPKFWAGEKFSADGGKEYLDLLPRHARLQNMTYSARIMVETHVQVYTKKLVRSDKFKT 196

Query: 362 GVERFVDKELEMEDKRDVLVGRIPVMVNSELCWMNGV 472
           GV++FVDKE E+EDKRDVL+GRIPVMVNSELCWMNGV
Sbjct: 197 GVDQFVDKECEVEDKRDVLIGRIPVMVNSELCWMNGV 233


>gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum lycopersicum]
          Length = 1123

 Score =  305 bits (781), Expect = 4e-81
 Identities = 145/157 (92%), Positives = 151/157 (96%)
 Frame = +2

Query: 2   FFEKYGLISHQINSYNDFINYGIQRVFASVGEIHVEPGYDPSKRGEGDWKHASIKFGKVS 181
           FFEKYG ISHQINSYNDFINYGIQRVF SVGEIHVEPGYDPSKRG+GDWKHAS+KFGKV+
Sbjct: 71  FFEKYGSISHQINSYNDFINYGIQRVFDSVGEIHVEPGYDPSKRGDGDWKHASVKFGKVT 130

Query: 182 LERPKFWAGEKFSVDGGKEYLDLWPRHARLQNMTYSARIMVETHVQVYTKKLVRSDKFKT 361
           LERPKFWAGEKFSV GGKEYLDL PRHARLQNMTYSARIMVETHVQVYTKKLVRSDKFKT
Sbjct: 131 LERPKFWAGEKFSVGGGKEYLDLLPRHARLQNMTYSARIMVETHVQVYTKKLVRSDKFKT 190

Query: 362 GVERFVDKELEMEDKRDVLVGRIPVMVNSELCWMNGV 472
           GV+RFVDKE E+E KRDVL+GRIPVMVNSELCWMNGV
Sbjct: 191 GVDRFVDKEWEVEGKRDVLIGRIPVMVNSELCWMNGV 227


>ref|XP_006364477.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
           [Solanum tuberosum]
          Length = 1219

 Score =  291 bits (746), Expect = 5e-77
 Identities = 135/156 (86%), Positives = 148/156 (94%)
 Frame = +2

Query: 2   FFEKYGLISHQINSYNDFINYGIQRVFASVGEIHVEPGYDPSKRGEGDWKHASIKFGKVS 181
           FFEKYG+ISHQI+SYNDFI YGIQRVF SVGEIHVEPGYDPSK+GEG+WKHAS+KFGKV+
Sbjct: 75  FFEKYGVISHQIDSYNDFIRYGIQRVFDSVGEIHVEPGYDPSKKGEGEWKHASVKFGKVT 134

Query: 182 LERPKFWAGEKFSVDGGKEYLDLWPRHARLQNMTYSARIMVETHVQVYTKKLVRSDKFKT 361
           L+RPKFWAGEKFS   G+EYLDLWPRHARLQNMTYSARI+VETHVQV+TKKLVRSDKFKT
Sbjct: 135 LDRPKFWAGEKFSAYNGEEYLDLWPRHARLQNMTYSARIIVETHVQVFTKKLVRSDKFKT 194

Query: 362 GVERFVDKELEMEDKRDVLVGRIPVMVNSELCWMNG 469
           GVE+FVDKE  MEDKRDV +GRIPVMVNSELCWM+G
Sbjct: 195 GVEQFVDKECVMEDKRDVFIGRIPVMVNSELCWMSG 230


>ref|XP_004245914.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Solanum
           lycopersicum]
          Length = 1219

 Score =  285 bits (728), Expect = 6e-75
 Identities = 131/156 (83%), Positives = 146/156 (93%)
 Frame = +2

Query: 2   FFEKYGLISHQINSYNDFINYGIQRVFASVGEIHVEPGYDPSKRGEGDWKHASIKFGKVS 181
           FFEKYGLISHQI+SYNDFI YGIQ+VF SVGEIHVEPGYDPSK+GEG+WKHAS+KFG V 
Sbjct: 75  FFEKYGLISHQIDSYNDFIRYGIQKVFDSVGEIHVEPGYDPSKKGEGEWKHASVKFGNVI 134

Query: 182 LERPKFWAGEKFSVDGGKEYLDLWPRHARLQNMTYSARIMVETHVQVYTKKLVRSDKFKT 361
           L+RPKFWAGEK+S   G+EYL++WPRHARLQNMTYSARI+VETHVQV+TKKLVRSDKFKT
Sbjct: 135 LDRPKFWAGEKYSAYNGEEYLNMWPRHARLQNMTYSARIIVETHVQVFTKKLVRSDKFKT 194

Query: 362 GVERFVDKELEMEDKRDVLVGRIPVMVNSELCWMNG 469
           GVE+FVDKE  MEDKRDV +GRIPVMVNSELCWM+G
Sbjct: 195 GVEQFVDKECVMEDKRDVFIGRIPVMVNSELCWMSG 230


>gb|ABG29321.1| DNA-directed RNA polymerase, putative [Solanum bulbocastanum]
          Length = 1018

 Score =  283 bits (723), Expect = 2e-74
 Identities = 133/156 (85%), Positives = 146/156 (93%)
 Frame = +2

Query: 2   FFEKYGLISHQINSYNDFINYGIQRVFASVGEIHVEPGYDPSKRGEGDWKHASIKFGKVS 181
           FFEKYG+ISHQI+SYNDFI YGIQRVF SVGEIHVEPGYDPSK+GEGDWKHAS+KFGKV+
Sbjct: 79  FFEKYGVISHQIDSYNDFIRYGIQRVFDSVGEIHVEPGYDPSKKGEGDWKHASVKFGKVT 138

Query: 182 LERPKFWAGEKFSVDGGKEYLDLWPRHARLQNMTYSARIMVETHVQVYTKKLVRSDKFKT 361
           L+RPKFWAGEKFS   G+EYL+LWPRHARLQNMTYSARI+VETH  V+TKKLVRSDKFKT
Sbjct: 139 LDRPKFWAGEKFSAYNGEEYLNLWPRHARLQNMTYSARIIVETH--VFTKKLVRSDKFKT 196

Query: 362 GVERFVDKELEMEDKRDVLVGRIPVMVNSELCWMNG 469
           GVE+FVDKE  MEDKRDV +GRIPVMVNSELCWM+G
Sbjct: 197 GVEQFVDKECVMEDKRDVFIGRIPVMVNSELCWMSG 232


>emb|CBI21137.3| unnamed protein product [Vitis vinifera]
          Length = 1220

 Score =  229 bits (584), Expect = 3e-58
 Identities = 109/158 (68%), Positives = 131/158 (82%), Gaps = 1/158 (0%)
 Frame = +2

Query: 2   FFEKYGLISHQINSYNDFINYGIQRVFASVGEIHVEPGYDPSKRGEGDWKHASIKFGKVS 181
           FF +YGLI HQINS+NDFI  GIQRVF S GEI VEPGYDPSKRGEGDW++AS++FGKV+
Sbjct: 93  FFNEYGLIQHQINSFNDFIKNGIQRVFDSFGEIPVEPGYDPSKRGEGDWRYASVRFGKVT 152

Query: 182 LERPKFWAGEKFSVDGGKEYLDLWPRHARLQNMTYSARIMVETHVQVYTKKLVRSDKFKT 361
           LERP+ WAGE      GKE L+  PRHARLQNMTYS+R+  + H QVYT+KLVRSDK+KT
Sbjct: 153 LERPRVWAGE----SDGKESLNFLPRHARLQNMTYSSRMKAQVHFQVYTQKLVRSDKYKT 208

Query: 362 GVE-RFVDKELEMEDKRDVLVGRIPVMVNSELCWMNGV 472
           G + ++V+K++  ED RD+L+GRIPVMV SELCWMNGV
Sbjct: 209 GKDNKYVEKKVIFEDNRDILIGRIPVMVKSELCWMNGV 246


>ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Vitis
           vinifera]
          Length = 1198

 Score =  229 bits (584), Expect = 3e-58
 Identities = 109/158 (68%), Positives = 131/158 (82%), Gaps = 1/158 (0%)
 Frame = +2

Query: 2   FFEKYGLISHQINSYNDFINYGIQRVFASVGEIHVEPGYDPSKRGEGDWKHASIKFGKVS 181
           FF +YGLI HQINS+NDFI  GIQRVF S GEI VEPGYDPSKRGEGDW++AS++FGKV+
Sbjct: 57  FFNEYGLIQHQINSFNDFIKNGIQRVFDSFGEIPVEPGYDPSKRGEGDWRYASVRFGKVT 116

Query: 182 LERPKFWAGEKFSVDGGKEYLDLWPRHARLQNMTYSARIMVETHVQVYTKKLVRSDKFKT 361
           LERP+ WAGE      GKE L+  PRHARLQNMTYS+R+  + H QVYT+KLVRSDK+KT
Sbjct: 117 LERPRVWAGE----SDGKESLNFLPRHARLQNMTYSSRMKAQVHFQVYTQKLVRSDKYKT 172

Query: 362 GVE-RFVDKELEMEDKRDVLVGRIPVMVNSELCWMNGV 472
           G + ++V+K++  ED RD+L+GRIPVMV SELCWMNGV
Sbjct: 173 GKDNKYVEKKVIFEDNRDILIGRIPVMVKSELCWMNGV 210


>gb|EOY29338.1| DNA-directed RNA polymerase isoform 3 [Theobroma cacao]
          Length = 1073

 Score =  209 bits (533), Expect = 2e-52
 Identities = 98/157 (62%), Positives = 123/157 (78%)
 Frame = +2

Query: 2   FFEKYGLISHQINSYNDFINYGIQRVFASVGEIHVEPGYDPSKRGEGDWKHASIKFGKVS 181
           FF++YGLISHQ+NSYN FI YG+Q  F S GE  +  GYDPSK+GEGDW+HA ++FGKV+
Sbjct: 48  FFKEYGLISHQLNSYNAFIKYGLQNTFDSFGEFLIHSGYDPSKKGEGDWRHARVRFGKVT 107

Query: 182 LERPKFWAGEKFSVDGGKEYLDLWPRHARLQNMTYSARIMVETHVQVYTKKLVRSDKFKT 361
           +ERP FWA     V GG E L++ PRHARLQNMTYS+R+ V   +QVYT K V+SDKFKT
Sbjct: 108 VERPTFWA-----VSGGNE-LNMLPRHARLQNMTYSSRMKVNVDLQVYTAKSVKSDKFKT 161

Query: 362 GVERFVDKELEMEDKRDVLVGRIPVMVNSELCWMNGV 472
           G E FV++E+  +D RD+++GRIPVMV S+LCWMN V
Sbjct: 162 GREEFVEEEVVYQDNRDIIIGRIPVMVRSDLCWMNEV 198


>gb|EOY29336.1| DNA-directed RNA polymerase isoform 1 [Theobroma cacao]
          Length = 1184

 Score =  209 bits (533), Expect = 2e-52
 Identities = 98/157 (62%), Positives = 123/157 (78%)
 Frame = +2

Query: 2   FFEKYGLISHQINSYNDFINYGIQRVFASVGEIHVEPGYDPSKRGEGDWKHASIKFGKVS 181
           FF++YGLISHQ+NSYN FI YG+Q  F S GE  +  GYDPSK+GEGDW+HA ++FGKV+
Sbjct: 48  FFKEYGLISHQLNSYNAFIKYGLQNTFDSFGEFLIHSGYDPSKKGEGDWRHARVRFGKVT 107

Query: 182 LERPKFWAGEKFSVDGGKEYLDLWPRHARLQNMTYSARIMVETHVQVYTKKLVRSDKFKT 361
           +ERP FWA     V GG E L++ PRHARLQNMTYS+R+ V   +QVYT K V+SDKFKT
Sbjct: 108 VERPTFWA-----VSGGNE-LNMLPRHARLQNMTYSSRMKVNVDLQVYTAKSVKSDKFKT 161

Query: 362 GVERFVDKELEMEDKRDVLVGRIPVMVNSELCWMNGV 472
           G E FV++E+  +D RD+++GRIPVMV S+LCWMN V
Sbjct: 162 GREEFVEEEVVYQDNRDIIIGRIPVMVRSDLCWMNEV 198


>gb|EXB86677.1| DNA-directed RNA polymerase D subunit 2a [Morus notabilis]
          Length = 1196

 Score =  207 bits (527), Expect = 1e-51
 Identities = 96/154 (62%), Positives = 124/154 (80%)
 Frame = +2

Query: 2   FFEKYGLISHQINSYNDFINYGIQRVFASVGEIHVEPGYDPSKRGEGDWKHASIKFGKVS 181
           FF +YGLISHQINSYNDFI  G+Q+VF S G++ VEPGYDPSK+ + +W++A ++FGKV+
Sbjct: 59  FFSEYGLISHQINSYNDFIRNGVQKVFDSFGDLIVEPGYDPSKKRQNEWRYALVRFGKVT 118

Query: 182 LERPKFWAGEKFSVDGGKEYLDLWPRHARLQNMTYSARIMVETHVQVYTKKLVRSDKFKT 361
           L+ P FW G     D  KEY +L PRHARLQNMTYS+R+ V  H++VYT+KLVRSDKFKT
Sbjct: 119 LDLPSFWGG----ADKDKEY-NLLPRHARLQNMTYSSRMKVNVHIEVYTQKLVRSDKFKT 173

Query: 362 GVERFVDKELEMEDKRDVLVGRIPVMVNSELCWM 463
           G E+F+DKE+   + +DV++GRIPVMV S+LCWM
Sbjct: 174 GKEQFLDKEIISTEDKDVMIGRIPVMVKSDLCWM 207


>gb|EPS73521.1| hypothetical protein M569_01229, partial [Genlisea aurea]
          Length = 1205

 Score =  205 bits (521), Expect = 6e-51
 Identities = 99/157 (63%), Positives = 128/157 (81%), Gaps = 3/157 (1%)
 Frame = +2

Query: 2   FFEKYGLISHQINSYNDFINYGIQRVFASVGEIHVEPGYDPSKRG-EGDWKHASIKFGKV 178
           FFE++GLISHQ+NSYN+FIN+GI ++FAS+GEI VEPGYDPSKRG +G+W+ AS+KFGKV
Sbjct: 60  FFEQHGLISHQLNSYNNFINHGIHQLFASIGEIIVEPGYDPSKRGDDGEWQKASLKFGKV 119

Query: 179 SLERPKFWAGEKF-SVDGGKEYLDLWPRHARLQNMTYSARIMVETHVQ-VYTKKLVRSDK 352
           +LERP FW GEKF S +G K+ L+L P+HARLQNMTY+ARI VETH++ VYT+ LVRS+K
Sbjct: 120 NLERPSFWTGEKFSSAEGAKDNLELHPKHARLQNMTYAARIKVETHLEVVYTEGLVRSEK 179

Query: 353 FKTGVERFVDKELEMEDKRDVLVGRIPVMVNSELCWM 463
           F TGV   V +        ++  G++PVMVNS+LCW+
Sbjct: 180 FTTGVSTHVQRTTLKSLSLEINFGKLPVMVNSDLCWL 216


>ref|XP_004288915.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Fragaria
           vesca subsp. vesca]
          Length = 1201

 Score =  205 bits (521), Expect = 6e-51
 Identities = 99/157 (63%), Positives = 119/157 (75%)
 Frame = +2

Query: 2   FFEKYGLISHQINSYNDFINYGIQRVFASVGEIHVEPGYDPSKRGEGDWKHASIKFGKVS 181
           FF++YGL+SHQINSYNDF+  GIQRVF S GEI VEP +DPSK+G  DW+ A+IKFGKV+
Sbjct: 65  FFKEYGLLSHQINSYNDFVENGIQRVFDSFGEIVVEPNFDPSKKGNADWRFAAIKFGKVT 124

Query: 182 LERPKFWAGEKFSVDGGKEYLDLWPRHARLQNMTYSARIMVETHVQVYTKKLVRSDKFKT 361
           L +P FW G     D  KEY ++ PRHARLQNMTYSAR+ V   VQVYT+ LV SDKFKT
Sbjct: 125 LSKPCFWGGS----DSDKEY-NMLPRHARLQNMTYSARMSVNITVQVYTQNLVESDKFKT 179

Query: 362 GVERFVDKELEMEDKRDVLVGRIPVMVNSELCWMNGV 472
           G E+ ++K     D RD+++GRIPVMV S LCWM GV
Sbjct: 180 GTEQLLEKTTLSTDSRDIIIGRIPVMVKSNLCWMKGV 216


>ref|XP_006442883.1| hypothetical protein CICLE_v10018562mg [Citrus clementina]
           gi|568850178|ref|XP_006478802.1| PREDICTED: DNA-directed
           RNA polymerases IV and V subunit 2-like [Citrus
           sinensis] gi|557545145|gb|ESR56123.1| hypothetical
           protein CICLE_v10018562mg [Citrus clementina]
          Length = 1198

 Score =  203 bits (516), Expect = 2e-50
 Identities = 93/157 (59%), Positives = 127/157 (80%)
 Frame = +2

Query: 2   FFEKYGLISHQINSYNDFINYGIQRVFASVGEIHVEPGYDPSKRGEGDWKHASIKFGKVS 181
           FF +YGL+SHQINSYN+FI  G+Q+ F S GE  VEPGYDPSK+GEG+W++AS++FG+V+
Sbjct: 58  FFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVT 117

Query: 182 LERPKFWAGEKFSVDGGKEYLDLWPRHARLQNMTYSARIMVETHVQVYTKKLVRSDKFKT 361
           L++P F+AG     +GG E+ D++PRHARLQNMTYS+R+ V+   QVYT+K V SDKFKT
Sbjct: 118 LDKPSFFAG-----NGGDEH-DMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKT 171

Query: 362 GVERFVDKELEMEDKRDVLVGRIPVMVNSELCWMNGV 472
           G E+++ KE+  ++  D+++GRIPVMV S+LCWM GV
Sbjct: 172 GREQYIQKEVLSDEATDIIIGRIPVMVKSDLCWMKGV 208


>ref|XP_004157128.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Cucumis
           sativus]
          Length = 1031

 Score =  203 bits (516), Expect = 2e-50
 Identities = 95/156 (60%), Positives = 124/156 (79%), Gaps = 2/156 (1%)
 Frame = +2

Query: 2   FFEKYGLISHQINSYNDFINYGIQRVFASVGEIHVEPGYDPSKRGEGDWKHASIKFGKVS 181
           FF +YGLISHQINSYNDFI  GIQ+ F   G+I V+PGYDPSK+G+G+W++A++KFGKV+
Sbjct: 59  FFNQYGLISHQINSYNDFIKNGIQKAFDFFGDILVQPGYDPSKKGDGEWRYATVKFGKVT 118

Query: 182 LERPKFWAGEKFSVDGGKEYLDLWPRHARLQNMTYSARIMVETHVQVYTKKLVRSDKFKT 361
           L++PKFW G       GKEY ++ PRHARLQNMTYS+R+ +   +++YT+KLV SDKFKT
Sbjct: 119 LDKPKFWGG----AASGKEY-NMLPRHARLQNMTYSSRMKINISLEIYTQKLVSSDKFKT 173

Query: 362 GVERFVDKE--LEMEDKRDVLVGRIPVMVNSELCWM 463
           G +++VDKE      D RDV +GR+PVMVNS+LCWM
Sbjct: 174 GKDQYVDKEPVEGASDNRDVFIGRLPVMVNSDLCWM 209


>ref|XP_004145500.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Cucumis
           sativus]
          Length = 1197

 Score =  203 bits (516), Expect = 2e-50
 Identities = 95/156 (60%), Positives = 124/156 (79%), Gaps = 2/156 (1%)
 Frame = +2

Query: 2   FFEKYGLISHQINSYNDFINYGIQRVFASVGEIHVEPGYDPSKRGEGDWKHASIKFGKVS 181
           FF +YGLISHQINSYNDFI  GIQ+ F   G+I V+PGYDPSK+G+G+W++A++KFGKV+
Sbjct: 59  FFNQYGLISHQINSYNDFIKNGIQKAFDFFGDILVQPGYDPSKKGDGEWRYATVKFGKVT 118

Query: 182 LERPKFWAGEKFSVDGGKEYLDLWPRHARLQNMTYSARIMVETHVQVYTKKLVRSDKFKT 361
           L++PKFW G       GKEY ++ PRHARLQNMTYS+R+ +   +++YT+KLV SDKFKT
Sbjct: 119 LDKPKFWGG----AASGKEY-NMLPRHARLQNMTYSSRMKINISLEIYTQKLVSSDKFKT 173

Query: 362 GVERFVDKE--LEMEDKRDVLVGRIPVMVNSELCWM 463
           G +++VDKE      D RDV +GR+PVMVNS+LCWM
Sbjct: 174 GKDQYVDKEPVEGASDNRDVFIGRLPVMVNSDLCWM 209


>ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putative [Ricinus communis]
           gi|223545372|gb|EEF46877.1| DNA-directed RNA polymerase
           subunit, putative [Ricinus communis]
          Length = 1203

 Score =  202 bits (514), Expect = 4e-50
 Identities = 95/154 (61%), Positives = 122/154 (79%)
 Frame = +2

Query: 2   FFEKYGLISHQINSYNDFINYGIQRVFASVGEIHVEPGYDPSKRGEGDWKHASIKFGKVS 181
           FF +YGLISHQINSYNDFIN GIQ+ F S GE+ VEPGYDPSK+GE +W++AS+KFGKV+
Sbjct: 70  FFNEYGLISHQINSYNDFINNGIQKAFDSFGELVVEPGYDPSKKGENEWRYASVKFGKVA 129

Query: 182 LERPKFWAGEKFSVDGGKEYLDLWPRHARLQNMTYSARIMVETHVQVYTKKLVRSDKFKT 361
           LE+P FW+G     D  K    + PRHARLQNMTYS+++ V   V+VYT+K+VRSDKFKT
Sbjct: 130 LEKPTFWSG----ADEHK----MLPRHARLQNMTYSSKMKVNVSVEVYTRKVVRSDKFKT 181

Query: 362 GVERFVDKELEMEDKRDVLVGRIPVMVNSELCWM 463
           G +++VDKE+   D R++ +G +PVMV S+LCWM
Sbjct: 182 GKDQYVDKEVLNTDNRNITIGSLPVMVKSDLCWM 215


>gb|EMJ26641.1| hypothetical protein PRUPE_ppa000410mg [Prunus persica]
          Length = 1200

 Score =  201 bits (511), Expect = 8e-50
 Identities = 95/154 (61%), Positives = 120/154 (77%)
 Frame = +2

Query: 2   FFEKYGLISHQINSYNDFINYGIQRVFASVGEIHVEPGYDPSKRGEGDWKHASIKFGKVS 181
           FF +YGLISHQINSYNDFI  GIQRVF S GEI VEPGYDPSK+GE +W++AS+KFGKV+
Sbjct: 62  FFNEYGLISHQINSYNDFIKNGIQRVFDSFGEIIVEPGYDPSKKGESEWRYASVKFGKVT 121

Query: 182 LERPKFWAGEKFSVDGGKEYLDLWPRHARLQNMTYSARIMVETHVQVYTKKLVRSDKFKT 361
           L  P FW G     D  KEY  + PRHARLQNM+Y++++ V   V+VYT+KLV SDKFKT
Sbjct: 122 LGMPSFWGGS----DDEKEY-KMLPRHARLQNMSYASKMKVNITVEVYTQKLVSSDKFKT 176

Query: 362 GVERFVDKELEMEDKRDVLVGRIPVMVNSELCWM 463
           G  +++DK++   D RD+++G +PVMV S+LCWM
Sbjct: 177 GKSQYLDKQILSTDTRDIIIGSVPVMVKSDLCWM 210


>ref|XP_003603295.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
           gi|355492343|gb|AES73546.1| DNA-directed RNA polymerase
           subunit beta [Medicago truncatula]
          Length = 1237

 Score =  197 bits (500), Expect = 2e-48
 Identities = 89/156 (57%), Positives = 122/156 (78%), Gaps = 1/156 (0%)
 Frame = +2

Query: 2   FFEKYGLISHQINSYNDFINYGIQRVFASVGEIHVEPGYDPSKRGEGD-WKHASIKFGKV 178
           FF++YGLISHQINSYN FIN G+Q  F S G++ V PG+DPSK+G  + +++A++KFGKV
Sbjct: 53  FFDQYGLISHQINSYNQFINSGLQSAFDSFGDLTVTPGFDPSKKGADEHYRYATVKFGKV 112

Query: 179 SLERPKFWAGEKFSVDGGKEYLDLWPRHARLQNMTYSARIMVETHVQVYTKKLVRSDKFK 358
           +LERPKFW GE     G  + L + PRHARLQ MTY++++ V+ H+QVY  K VRSDKFK
Sbjct: 113 TLERPKFWCGE-----GNAQELKMLPRHARLQRMTYASKMKVDVHIQVYVMKKVRSDKFK 167

Query: 359 TGVERFVDKELEMEDKRDVLVGRIPVMVNSELCWMN 466
           TG E ++DK+++ ED R++ +GR+PVMV S+LCWM+
Sbjct: 168 TGKEEYIDKDIKWEDTREITIGRLPVMVKSDLCWMS 203


>ref|XP_002324332.2| DNA-directed RNA polymerase family protein [Populus trichocarpa]
           gi|550317882|gb|EEF02897.2| DNA-directed RNA polymerase
           family protein [Populus trichocarpa]
          Length = 1181

 Score =  196 bits (499), Expect = 2e-48
 Identities = 89/157 (56%), Positives = 121/157 (77%)
 Frame = +2

Query: 2   FFEKYGLISHQINSYNDFINYGIQRVFASVGEIHVEPGYDPSKRGEGDWKHASIKFGKVS 181
           FF++YGLISHQINSYN FIN G+QRVF S GE+ VEPGYD SK+ +G+W+ AS++FGKV+
Sbjct: 55  FFDEYGLISHQINSYNAFINSGLQRVFDSFGEVAVEPGYDSSKQKDGEWRRASVRFGKVT 114

Query: 182 LERPKFWAGEKFSVDGGKEYLDLWPRHARLQNMTYSARIMVETHVQVYTKKLVRSDKFKT 361
           L+RP FW G     +      +++PRHARLQNMTYSAR+ +  +VQVYT+ + RSDKFKT
Sbjct: 115 LDRPSFWGGTSSDAEH-----NMFPRHARLQNMTYSARMKIHVNVQVYTQTVGRSDKFKT 169

Query: 362 GVERFVDKELEMEDKRDVLVGRIPVMVNSELCWMNGV 472
           G+++ V K +   + R++++GRIPVMV S+LCW+  V
Sbjct: 170 GIDKVVQKNVVHTENREIIIGRIPVMVKSDLCWLTTV 206