BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atropa21_contig00025046
         (763 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulga...   152   1e-44
gb|ABD33261.1| RNA-directed DNA polymerase (Reverse transcriptas...   159   7e-43
ref|XP_004247247.1| PREDICTED: uncharacterized protein LOC101256...   114   3e-35
ref|XP_004240821.1| PREDICTED: uncharacterized protein LOC101254...    95   1e-30
emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga...   105   4e-29
gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]               115   7e-28
ref|XP_006599894.1| PREDICTED: uncharacterized protein LOC102668...    99   7e-28
dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ...   116   2e-27
dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]           116   2e-27
dbj|BAB01344.1| reverse transcriptase-like protein [Arabidopsis ...   124   3e-26
emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-li...   109   3e-26
ref|XP_006598323.1| PREDICTED: uncharacterized protein LOC102660...    89   3e-26
dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like ...   108   5e-26
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,...   112   7e-26
gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00...   108   1e-25
ref|XP_004237698.1| PREDICTED: uncharacterized protein LOC101249...   116   1e-25
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta...    91   2e-25
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta...    91   2e-25
gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam...    92   4e-25
emb|CAB40051.1| putative protein [Arabidopsis thaliana] gi|72677...    92   4e-25

>emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1110

 Score =  152 bits (385), Expect(2) = 1e-44
 Identities = 89/238 (37%), Positives = 131/238 (55%), Gaps = 34/238 (14%)
 Frame = +3

Query: 150  KMLKAINC---TVLPKDSNPYNIRDYRPIACCIVLYKIITKILARRIQKVISSVISETQA 320
            +M + INC   T+LPK  +   ++++RPIACC V+YKII+K+L  R++ +I  V++E Q+
Sbjct: 489  RMHRPINCIVVTLLPKVQHATRVKEFRPIACCTVIYKIISKMLTNRMKGIIGEVVNEAQS 548

Query: 321  EFIPGKKVADNVILTHELVKGYNRKNVSPRCMI---------DR*WNVSNGELFHFG--- 464
             FIPG+ +ADN++L  EL++GY RK++SPRC++            W+     L+ FG   
Sbjct: 549  GFIPGRHIADNILLASELIRGYTRKHMSPRCIMKVDIRKAYDSVEWSFLETLLYEFGFPS 608

Query: 465  ---*W*AH*A----------------F*CCNGFKARRPISSLLFVVVMEYLSRNLADFKT 587
                W                     F    G +   P+S  LF + MEYLSR L + K 
Sbjct: 609  RFVGWIMECVSTVSYSVLVNGIPTQPFQARKGLRQGDPMSPFLFALCMEYLSRCLEELKG 668

Query: 588  VNTFKNHPKFKKLDIAHLSFLDDLLLFARGDQQSLSLLHEKFNIFTAASGLRENLNKS 761
               F  HPK ++L+I HL F DDLL+F R D+ SL  ++  F  F+ ASGL  +  KS
Sbjct: 669  SPDFNFHPKCERLNITHLMFADDLLMFCRADKSSLDHMNVAFQKFSHASGLAASHEKS 726



 Score = 54.7 bits (130), Expect(2) = 1e-44
 Identities = 24/44 (54%), Positives = 34/44 (77%)
 Frame = +2

Query: 8   EILDALNSIGDDKAPRVDDFNAFFYKKAWSVIKEDICEVVKEFF 139
           EI +AL  IG+DKAP +D FNA+F+KK+W  IK++I   ++EFF
Sbjct: 442 EIDEALAGIGNDKAPGLDGFNAYFFKKSWGSIKQEIYAGIQEFF 485


>gb|ABD33261.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 402

 Score =  159 bits (403), Expect(2) = 7e-43
 Identities = 93/228 (40%), Positives = 135/228 (59%), Gaps = 34/228 (14%)
 Frame = +3

Query: 153 MLKAINCT---VLPKDSNPYNIRDYRPIACCIVLYKIITKILARRIQKVISSVISETQAE 323
           M K INCT   +LPK+ N  +++++RPIACC V+YKII+KIL  R+Q V++SV+SE Q+ 
Sbjct: 173 MPKIINCTYMTLLPKEVNVTSVKNFRPIACCSVIYKIISKILTSRMQGVLNSVVSENQSA 232

Query: 324 FIPGKKVADNVILTHELVKGYNRKNVSPRCMI----DR*WN-----------VSNGELFH 458
           F+ G+ + DN+IL+HELVK Y+RK +SPRCM+     + +N           +  G  + 
Sbjct: 233 FVKGRVIFDNIILSHELVKSYSRKGISPRCMVKIDLQKAYNSVEWPFIKHLMLELGFSYK 292

Query: 459 FG*W----------------*AH*AF*CCNGFKARRPISSLLFVVVMEYLSRNLADFKTV 590
           F  W                     F    G +   PIS  LFV+ MEYL+  L   +  
Sbjct: 293 FVNWVMGCLTTASYTFNINGDLTRPFAAKKGLRQGDPISPYLFVICMEYLNICLIQLRKN 352

Query: 591 NTFKNHPKFKKLDIAHLSFLDDLLLFARGDQQSLSLLHEKFNIFTAAS 734
             F+ HP+ K+L++ H+ F+DDLLLF+RGD  S+S L E F++F+AAS
Sbjct: 353 AAFRFHPRCKRLNLIHVCFVDDLLLFSRGDVDSVSQLFEAFSLFSAAS 400



 Score = 41.6 bits (96), Expect(2) = 7e-43
 Identities = 15/46 (32%), Positives = 29/46 (63%)
 Frame = +2

Query: 8   EILDALNSIGDDKAPRVDDFNAFFYKKAWSVIKEDICEVVKEFFAT 145
           E+ + L S+   KAP +D +N  F+K +W++I + + + + +FF T
Sbjct: 125 EVKNVLFSMDSSKAPGIDGYNVHFFKCSWNIIGDSVIDAILDFFKT 170


>ref|XP_004247247.1| PREDICTED: uncharacterized protein LOC101256917 [Solanum
           lycopersicum]
          Length = 421

 Score =  114 bits (286), Expect(2) = 3e-35
 Identities = 71/208 (34%), Positives = 111/208 (53%), Gaps = 4/208 (1%)
 Frame = +3

Query: 150 KMLKAINCTV---LPKDSNPYNIRDYRPIACCIVLYKIITKILARRIQKVISSVISETQA 320
           K+ K  NCT+   +PK  +P N+++YR I CC VLYKII+K++  R+  VI +VI ++Q 
Sbjct: 157 KLFKPFNCTLVSLIPKVQSPKNVKEYRTITCCTVLYKIISKVITNRMHDVIHNVICDSQV 216

Query: 321 EFIPGKKVADNVILTHELVKGYNRKNVSPRCMIDR*WNVSNGELFHFG*W*AH*AF*CCN 500
            FI G+K+++N++L HELV  Y RKN+SPR M+     +   +++    W          
Sbjct: 217 GFILGRKISENILLAHELVNSYTRKNISPRSML----KIDLQKVYDSVEWPF-------- 264

Query: 501 GFKARRPISSLLFVVVMEYLSRNLADFKTVNTFKNHPKFKKLDIAHLSF-LDDLLLFARG 677
               ++ +  L F  +      +           N    ++ D A L +  ++LLLF+RG
Sbjct: 265 ---LKQVMVGLGFPDMFTQWVMHCVKTVNYTIVVNGQTTQRFDAARLFYCYNNLLLFSRG 321

Query: 678 DQQSLSLLHEKFNIFTAASGLRENLNKS 761
           D  S+  L   F  F+ ASG + NLNKS
Sbjct: 322 DLNSIKALKGCFLEFSQASGQQANLNKS 349



 Score = 61.2 bits (147), Expect(2) = 3e-35
 Identities = 27/50 (54%), Positives = 36/50 (72%)
 Frame = +2

Query: 2   DKEILDALNSIGDDKAPRVDDFNAFFYKKAWSVIKEDICEVVKEFFATEK 151
           +++I  AL SIG+DKAP +D +NAFF+K  W +IK DI EVV+ FF   K
Sbjct: 108 EEKIFAALQSIGNDKAPGIDGYNAFFFKYTWKIIKNDIIEVVQSFFKPGK 157


>ref|XP_004240821.1| PREDICTED: uncharacterized protein LOC101254905 [Solanum
           lycopersicum]
          Length = 224

 Score = 94.7 bits (234), Expect(2) = 1e-30
 Identities = 44/93 (47%), Positives = 67/93 (72%), Gaps = 3/93 (3%)
 Frame = +3

Query: 150 KMLKAINCTVL---PKDSNPYNIRDYRPIACCIVLYKIITKILARRIQKVISSVISETQA 320
           KM K  NCT++   PK  +P  +++YR IACC +L +II+K++ +R+ +VI +V+ ++QA
Sbjct: 125 KMCKPFNCTLVSLFPKVQSPKTVKEYRAIACCTILCQIISKVITKRMHEVIHTVVCDSQA 184

Query: 321 EFIPGKKVADNVILTHELVKGYNRKNVSPRCMI 419
              PG+K+AD +IL HEL K Y RKN+SPR M+
Sbjct: 185 --APGRKIADYIILAHELGKAYTRKNISPRSML 215



 Score = 65.9 bits (159), Expect(2) = 1e-30
 Identities = 28/50 (56%), Positives = 37/50 (74%)
 Frame = +2

Query: 2   DKEILDALNSIGDDKAPRVDDFNAFFYKKAWSVIKEDICEVVKEFFATEK 151
           ++EI  AL SIG+DKAP +D +NAFF+K  W +IK+D+ E VK FF T K
Sbjct: 76  EQEIYTALQSIGNDKAPGIDGYNAFFFKHTWKIIKKDVIEAVKRFFTTGK 125


>emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1114

 Score =  105 bits (262), Expect(2) = 4e-29
 Identities = 81/241 (33%), Positives = 115/241 (47%), Gaps = 38/241 (15%)
 Frame = +3

Query: 153  MLKAINCT---VLPKDSNPYNIRDYRPIACCIVLYKIITKILARRIQKVISSVISETQA- 320
            M K INCT   ++PK     + +DYRPIACC  LYKII+KIL +R+Q VI+ V+   Q  
Sbjct: 493  MHKPINCTAVTLIPKIDEAKHAKDYRPIACCSTLYKIISKILTKRLQAVITEVVDCAQTG 552

Query: 321  ---------------EFIPG---KKVADNVILTHELVKGYNR----------KNVSPRCM 416
                           E I G   + V+   ++  ++ K Y+           K +    M
Sbjct: 553  FIPERHIGDNILLATELIRGYNRRHVSPRCVIKVDIRKAYDSVEWVFLESMLKELGFPSM 612

Query: 417  IDR*W------NVSNGELFHFG*W*AH*AF*CCNGFKARRPISSLLFVVVMEYLSRNLAD 578
              R W       VS   L +         F    G +   P+S  LF + MEYLSR + +
Sbjct: 613  FIR-WIMACVKTVSYSILLN---GIPSIPFDAQKGLRQGDPLSPFLFALSMEYLSRCMGN 668

Query: 579  FKTVNTFKNHPKFKKLDIAHLSFLDDLLLFARGDQQSLSLLHEKFNIFTAASGLRENLNK 758
                  F  HPK +++ + HL F DDLL+FAR D  S+S +   FN F+ ASGL+ ++ K
Sbjct: 669  MCKDPEFNFHPKCERIKLTHLMFADDLLMFARADASSISKIMAAFNSFSKASGLQASIEK 728

Query: 759  S 761
            S
Sbjct: 729  S 729



 Score = 49.7 bits (117), Expect(2) = 4e-29
 Identities = 23/45 (51%), Positives = 32/45 (71%)
 Frame = +2

Query: 5   KEILDALNSIGDDKAPRVDDFNAFFYKKAWSVIKEDICEVVKEFF 139
           +EI  AL  I D KAP +D FN+ F+KK+W VIK++I E + +FF
Sbjct: 444 QEIDQALADIDDTKAPGLDGFNSVFFKKSWLVIKQEIYEGILDFF 488


>gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]
          Length = 872

 Score =  115 bits (289), Expect(2) = 7e-28
 Identities = 84/244 (34%), Positives = 126/244 (51%), Gaps = 35/244 (14%)
 Frame = +3

Query: 135 SLLQKKML-KAINCTVL---PKDSNPYNIRDYRPIACCIVLYKIITKILARRIQKVISSV 302
           S  QK  L K IN  +L   PK      +RDYRPI+CC VLYK+I+KI+A R++ ++   
Sbjct: 145 SFFQKGFLPKGINSIILALIPKKLAAKEMRDYRPISCCNVLYKVISKIIANRLKLLLPRF 204

Query: 303 ISETQAEFIPGKKVADNVILTHELVKGYNRKNVSPRCMI---------DR*WNVSNGEL- 452
           I+E Q+ F+  + + +N++L  ELVK Y++ ++S RC I            W+     L 
Sbjct: 205 IAENQSAFVKDRLLIENLLLATELVKDYHKDSISARCAIKIDISKAFDSVQWSFLTNTLV 264

Query: 453 -FHFG*W*AH*AF*C---------CNG-----FKARR------PISSLLFVVVMEYLSRN 569
             +F     H    C          NG     F+++R       +S  LFV+ M+ LS+ 
Sbjct: 265 AMNFSPTFIHWINLCITTASFSVQVNGDLVGYFQSKRGLRQGCSLSPYLFVICMDVLSKM 324

Query: 570 LADFKTVNTFKNHPKFKKLDIAHLSFLDDLLLFARGDQQSLSLLHEKFNIFTAASGLREN 749
           L     V  F  HPK ++L + HLSF DDL++ + G  +S+  + E F+ F   SGLR +
Sbjct: 325 LDKAAGVRKFGFHPKCQRLGLTHLSFADDLMVLSDGKTRSIEGILEVFDEFCKRSGLRIS 384

Query: 750 LNKS 761
           L KS
Sbjct: 385 LEKS 388



 Score = 35.0 bits (79), Expect(2) = 7e-28
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +2

Query: 5   KEILDALNSIGDDKAPRVDDFNAFFYKKAWSVIKEDICEVVKEFF 139
           +EI   L S+  DK+P  D + + FYK  W +I ++    V+ FF
Sbjct: 103 EEIKTVLFSMPKDKSPGPDGYTSEFYKATWDIIGQEFTLPVQSFF 147


>ref|XP_006599894.1| PREDICTED: uncharacterized protein LOC102668020 [Glycine max]
          Length = 603

 Score = 98.6 bits (244), Expect(2) = 7e-28
 Identities = 66/207 (31%), Positives = 100/207 (48%), Gaps = 3/207 (1%)
 Frame = +3

Query: 150 KMLKAINCTVL---PKDSNPYNIRDYRPIACCIVLYKIITKILARRIQKVISSVISETQA 320
           K+LK +N  ++   PK      +  +RPI+CC +LYKI++KILA RI  V+ ++I ETQ 
Sbjct: 312 KILKQLNHAIIALIPKHDQASQVNHFRPISCCNLLYKIVSKILANRIAPVLETIIGETQT 371

Query: 321 EFIPGKKVADNVILTHELVKGYNRKNVSPRCMIDR*WNVSNGELFHFG*W*AH*AF*CCN 500
            FI  KK+ DN+ L  E+++ Y  K  SPRC++                          +
Sbjct: 372 AFIKNKKMMDNIFLIQEILRKYAWKRSSPRCLLK------------------------ID 407

Query: 501 GFKARRPISSLLFVVVMEYLSRNLADFKTVNTFKNHPKFKKLDIAHLSFLDDLLLFARGD 680
             KA   IS        E+L   L     +  F        + ++HL+F DD++L +RGD
Sbjct: 408 LHKAYDSIS-------WEFLDWMLKSIGFLTQF-------CIQLSHLAFADDIMLLSRGD 453

Query: 681 QQSLSLLHEKFNIFTAASGLRENLNKS 761
             S+S +  K   F   SGL  + +KS
Sbjct: 454 IPSVSTMFAKLQHFCRVSGLSISSDKS 480



 Score = 52.4 bits (124), Expect(2) = 7e-28
 Identities = 22/49 (44%), Positives = 34/49 (69%)
 Frame = +2

Query: 5   KEILDALNSIGDDKAPRVDDFNAFFYKKAWSVIKEDICEVVKEFFATEK 151
           +E+ + ++ + ++KAP  D FN  F+KKAW++I +DI E V EFF T K
Sbjct: 264 QEVWNVISVMDNNKAPGPDGFNVLFFKKAWNIIGDDIFEAVNEFFTTGK 312


>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
            thaliana]
          Length = 1072

 Score =  116 bits (290), Expect(2) = 2e-27
 Identities = 80/246 (32%), Positives = 117/246 (47%), Gaps = 42/246 (17%)
 Frame = +3

Query: 150  KMLKAINCTVL---PKDSNPYNIRDYRPIACCIVLYKIITKILARRIQKVISSVISETQA 320
            ++LK  N T L   PK SN   I ++RPI+C   LYK+I+K+L  R+Q ++S+VI  +Q+
Sbjct: 358  QLLKQWNATTLVLIPKTSNACTISEFRPISCLNTLYKVISKLLTSRLQGLLSAVIGHSQS 417

Query: 321  EFIPGKKVADNVILTHELVKGYNRKNVSPR------------------------------ 410
             F+PG+ +A+NV+L  E+V GYNR N+SPR                              
Sbjct: 418  AFLPGRSLAENVLLATEMVHGYNRLNISPRGMLKVDLKKAFDSVKWEFVTAALRALAIPE 477

Query: 411  --------CMIDR*WNVS-NGELFHFG*W*AH*AF*CCNGFKARRPISSLLFVVVMEYLS 563
                    C+    + +S NG    F        F    G +   P+S  LFV+ ME  S
Sbjct: 478  RYINWIHQCITTPSFTISVNGATGGF--------FRSTKGLRQGDPLSPYLFVLAMEVFS 529

Query: 564  RNLADFKTVNTFKNHPKFKKLDIAHLSFLDDLLLFARGDQQSLSLLHEKFNIFTAASGLR 743
            + L           HPK   L I+HL F DD+++F  G   S+  + E  + F   SGL+
Sbjct: 530  KLLYSRYDSGYIHYHPKAGDLSISHLMFADDVMIFFDGGSSSMHGICETLDDFADWSGLK 589

Query: 744  ENLNKS 761
             N +KS
Sbjct: 590  VNKDKS 595



 Score = 33.1 bits (74), Expect(2) = 2e-27
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +2

Query: 2   DKEILDALNSIGDDKAPRVDDFNAFFYKKAWSVIKEDICEVVKEFF 139
           D EI  A  S+  +K    D ++  F++  WS+I  ++   + EFF
Sbjct: 309 DDEIKAAFKSLPRNKTSGPDGYSVEFFRDTWSIIGPEVLAAIHEFF 354


>dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1072

 Score =  116 bits (290), Expect(2) = 2e-27
 Identities = 80/246 (32%), Positives = 117/246 (47%), Gaps = 42/246 (17%)
 Frame = +3

Query: 150  KMLKAINCTVL---PKDSNPYNIRDYRPIACCIVLYKIITKILARRIQKVISSVISETQA 320
            ++LK  N T L   PK SN   I ++RPI+C   LYK+I+K+L  R+Q ++S+VI  +Q+
Sbjct: 358  QLLKQWNATTLVLIPKTSNACTISEFRPISCLNTLYKVISKLLTSRLQGLLSAVIGHSQS 417

Query: 321  EFIPGKKVADNVILTHELVKGYNRKNVSPR------------------------------ 410
             F+PG+ +A+NV+L  E+V GYNR N+SPR                              
Sbjct: 418  AFLPGRSLAENVLLATEMVHGYNRLNISPRGMLKVDLKKAFDSVKWEFVTAALRALAIPE 477

Query: 411  --------CMIDR*WNVS-NGELFHFG*W*AH*AF*CCNGFKARRPISSLLFVVVMEYLS 563
                    C+    + +S NG    F        F    G +   P+S  LFV+ ME  S
Sbjct: 478  RYINWIHQCITTPSFTISVNGATGGF--------FRSTKGLRQGDPLSPYLFVLAMEVFS 529

Query: 564  RNLADFKTVNTFKNHPKFKKLDIAHLSFLDDLLLFARGDQQSLSLLHEKFNIFTAASGLR 743
            + L           HPK   L I+HL F DD+++F  G   S+  + E  + F   SGL+
Sbjct: 530  KLLYSRYDSGYIHYHPKAGDLSISHLMFADDVMIFFDGGSSSMHGICETLDDFADWSGLK 589

Query: 744  ENLNKS 761
             N +KS
Sbjct: 590  VNKDKS 595



 Score = 33.1 bits (74), Expect(2) = 2e-27
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +2

Query: 2   DKEILDALNSIGDDKAPRVDDFNAFFYKKAWSVIKEDICEVVKEFF 139
           D EI  A  S+  +K    D ++  F++  WS+I  ++   + EFF
Sbjct: 309 DDEIKAAFKSLPRNKTSGPDGYSVEFFRDTWSIIGPEVLAAIHEFF 354


>dbj|BAB01344.1| reverse transcriptase-like protein [Arabidopsis thaliana]
          Length = 1115

 Score =  124 bits (312), Expect = 3e-26
 Identities = 73/204 (35%), Positives = 110/204 (53%), Gaps = 3/204 (1%)
 Frame = +3

Query: 159  KAINCTVL---PKDSNPYNIRDYRPIACCIVLYKIITKILARRIQKVISSVISETQAEFI 329
            K +N T+L   PK      +RDYRPI+CC VLYK+I+KI+A R+++++   IS  Q+ F+
Sbjct: 472  KGVNSTILALIPKKKESKEMRDYRPISCCNVLYKVISKIIANRLKRILPKFISGNQSAFV 531

Query: 330  PGKKVADNVILTHELVKGYNRKNVSPRCMIDR*WNVSNGELFHFG*W*AH*AF*CCNGFK 509
              + + +NV+L  ELVK Y++ + S +          NGEL  +        F    G +
Sbjct: 532  KDRLLIENVLLATELVKDYHKTSFSVQV---------NGELAGY--------FRSARGIR 574

Query: 510  ARRPISSLLFVVVMEYLSRNLADFKTVNTFKNHPKFKKLDIAHLSFLDDLLLFARGDQQS 689
                +S  LFV+ ME LS+ L        F  HPK K L + HL F DDL++   G  +S
Sbjct: 575  QGCALSPYLFVISMEVLSKMLDQAAGAKRFGFHPKCKNLGLTHLCFADDLMILTDGKVRS 634

Query: 690  LSLLHEKFNIFTAASGLRENLNKS 761
            +  + E  N+F   SGL+ N+ K+
Sbjct: 635  VDGIVEVMNLFAKRSGLKINMEKT 658


>emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-like protein
            [Arabidopsis thaliana]
          Length = 893

 Score =  109 bits (273), Expect(2) = 3e-26
 Identities = 80/242 (33%), Positives = 119/242 (49%), Gaps = 38/242 (15%)
 Frame = +3

Query: 150  KMLKAINCTVL---PKDSNPYNIRDYRPIACCIVLYKIITKILARRIQKVISSVISETQA 320
            ++LK  N T L   PK +N   + D+RPI+C   LYK+I K+L  R++K+++ VIS +Q+
Sbjct: 499  QLLKQWNATTLVLIPKITNSSKMTDFRPISCLNTLYKVIAKLLTSRLKKLLNEVISPSQS 558

Query: 321  EFIPGKKVADNVILTHELVKGYNRKNVSPRCMIDR*WNVSNGELFHFG*W---------- 470
             F+PG+ +++NV+L  E+V GYN KN+S R M+     V   + F    W          
Sbjct: 559  AFLPGRLLSENVLLATEIVHGYNTKNISSRGML----KVDLRKAFDSVRWDFIISAFRAL 614

Query: 471  *AH*AF*C--------------CNG-----FKARR------PISSLLFVVVMEYLSRNLA 575
                 F C               NG     FK+ +      P+S  LFV+ ME  S  L 
Sbjct: 615  AVPEKFVCWINQCISTPYFSVMVNGSSSGFFKSNKGLRQGDPLSPYLFVLAMEVFSSLLK 674

Query: 576  DFKTVNTFKNHPKFKKLDIAHLSFLDDLLLFARGDQQSLSLLHEKFNIFTAASGLRENLN 755
                    + HPK   L I+HL F DD+++F  G   SL  + E  + F + SGL  N +
Sbjct: 675  ARFDAGYIQYHPKTADLSISHLMFADDVMVFFDGGSSSLHGISEALDDFASWSGLHVNKD 734

Query: 756  KS 761
            K+
Sbjct: 735  KT 736



 Score = 35.8 bits (81), Expect(2) = 3e-26
 Identities = 16/46 (34%), Positives = 28/46 (60%)
 Frame = +2

Query: 2   DKEILDALNSIGDDKAPRVDDFNAFFYKKAWSVIKEDICEVVKEFF 139
           D +I +A  S+  +KA   D +++ F+K  W V+  ++ E V+EFF
Sbjct: 450 DLDIQEAFFSLPRNKASGPDGYSSEFFKGVWFVVGPEVTEAVQEFF 495


>ref|XP_006598323.1| PREDICTED: uncharacterized protein LOC102660513 [Glycine max]
          Length = 543

 Score = 89.0 bits (219), Expect(2) = 3e-26
 Identities = 37/85 (43%), Positives = 61/85 (71%), Gaps = 3/85 (3%)
 Frame = +3

Query: 150 KMLKAINCTV---LPKDSNPYNIRDYRPIACCIVLYKIITKILARRIQKVISSVISETQA 320
           KM + IN ++   +PK+      RDYRPI+CC  +YK+I+K+L  R+ +VI S++ ++QA
Sbjct: 459 KMYEPINTSLVILIPKNQEAKYARDYRPISCCTTIYKVISKVLTTRLSRVIKSIVHQSQA 518

Query: 321 EFIPGKKVADNVILTHELVKGYNRK 395
            F+PG+K+ D ++L +EL++GY RK
Sbjct: 519 AFVPGQKIHDQILLAYELIQGYERK 543



 Score = 56.6 bits (135), Expect(2) = 3e-26
 Identities = 26/50 (52%), Positives = 34/50 (68%)
 Frame = +2

Query: 2   DKEILDALNSIGDDKAPRVDDFNAFFYKKAWSVIKEDICEVVKEFFATEK 151
           D+EI  AL SIGD KAP +D + A F+K AWS+IK D  + ++EFF   K
Sbjct: 410 DEEIDKALKSIGDLKAPGIDGYGAKFFKDAWSIIKSDFTDAIREFFEKGK 459


>dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 893

 Score =  108 bits (271), Expect(2) = 5e-26
 Identities = 80/242 (33%), Positives = 118/242 (48%), Gaps = 38/242 (15%)
 Frame = +3

Query: 150  KMLKAINCTVL---PKDSNPYNIRDYRPIACCIVLYKIITKILARRIQKVISSVISETQA 320
            ++LK  N T L   PK +N   + D+RPI+C   LYK+I K+L  R++K+++ VIS +Q+
Sbjct: 499  QLLKQWNATTLVLIPKITNSSKMTDFRPISCLNTLYKVIAKLLTSRLKKLLNEVISPSQS 558

Query: 321  EFIPGKKVADNVILTHELVKGYNRKNVSPRCMIDR*WNVSNGELFHFG*W---------- 470
             F+PG+ +++NV+L  E+V GYN KN+S R M+     V   + F    W          
Sbjct: 559  AFLPGRLLSENVLLATEIVHGYNTKNISSRGML----KVDLRKAFDSVRWDFIISAFRAL 614

Query: 471  *AH*AF*C--------------CNG-----FKARR------PISSLLFVVVMEYLSRNLA 575
                 F C               NG     FK+ +      P+S  LFV+ ME  S  L 
Sbjct: 615  AVPEKFVCWINQCISTPYFSVMVNGSSSGFFKSNKGLRQGDPLSPYLFVLAMEVFSSLLK 674

Query: 576  DFKTVNTFKNHPKFKKLDIAHLSFLDDLLLFARGDQQSLSLLHEKFNIFTAASGLRENLN 755
                      HPK   L I+HL F DD+++F  G   SL  + E  + F + SGL  N +
Sbjct: 675  ARFDAGYIHYHPKTADLSISHLMFADDVMVFFDGGSSSLHGISEALDDFASWSGLHVNKD 734

Query: 756  KS 761
            K+
Sbjct: 735  KT 736



 Score = 35.8 bits (81), Expect(2) = 5e-26
 Identities = 16/46 (34%), Positives = 28/46 (60%)
 Frame = +2

Query: 2   DKEILDALNSIGDDKAPRVDDFNAFFYKKAWSVIKEDICEVVKEFF 139
           D +I +A  S+  +KA   D +++ F+K  W V+  ++ E V+EFF
Sbjct: 450 DLDIQEAFFSLPRNKASGPDGYSSEFFKGVWFVVGPEVTEAVQEFF 495


>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
            [Arabidopsis thaliana]
          Length = 1164

 Score =  112 bits (279), Expect(2) = 7e-26
 Identities = 75/239 (31%), Positives = 112/239 (46%), Gaps = 35/239 (14%)
 Frame = +3

Query: 150  KMLKAINCTVLPKDSNPYNIRDYRPIACCIVLYKIITKILARRIQKVISSVISETQAEFI 329
            K   A N  ++PK +N  ++ D+RPI+C   +YK+I+K+L  R++  + + IS +Q+ F+
Sbjct: 398  KQWNATNLVLIPKITNASSMSDFRPISCLNTVYKVISKLLTDRLKDFLPAAISHSQSAFM 457

Query: 330  PGKKVADNVILTHELVKGYNRKNVSPRCMIDR*WNVSNGELFHFG*W------------- 470
            PG+   +NV+L  ELV GYN+KN++P  M+     V   + F    W             
Sbjct: 458  PGRLFLENVLLATELVHGYNKKNIAPSSML----KVDLRKAFDSVRWDFIVSALRALNVP 513

Query: 471  --------------------*AH*A--F*CCNGFKARRPISSLLFVVVMEYLSRNLADFK 584
                                  H A  F    G +   P+S  LFV+ ME  S  L    
Sbjct: 514  EKFTCWILECLSTASFSVILNGHSAGHFWSSKGLRQGDPMSPYLFVLAMEVFSGLLQSRY 573

Query: 585  TVNTFKNHPKFKKLDIAHLSFLDDLLLFARGDQQSLSLLHEKFNIFTAASGLRENLNKS 761
            T      HPK  +L+I+HL F DD+++F  G   SL  + E    F   SGL  N NK+
Sbjct: 574  TSGYIAYHPKTSQLEISHLMFADDVMIFFDGKSSSLHGIVESLEDFAGWSGLLMNTNKT 632



 Score = 32.3 bits (72), Expect(2) = 7e-26
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +2

Query: 5   KEILDALNSIGDDKAPRVDDFNAFFYKKAWSVIKEDICEVVKEFFATEK 151
           ++I +A  S+  +KA   D F+  F+   W +I  ++ E + EFF + K
Sbjct: 347 EQIKNAFFSLPRNKASGPDGFSPEFFCACWPIIGGEVTEAIHEFFTSGK 395


>gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00078 [Arabidopsis
            thaliana]
          Length = 1253

 Score =  108 bits (270), Expect(2) = 1e-25
 Identities = 84/241 (34%), Positives = 115/241 (47%), Gaps = 38/241 (15%)
 Frame = +3

Query: 153  MLKAINCTVL---PKDSNPYNIRDYRPIACC----IVLYKIITKILARRIQKVISSVISE 311
            +LK  N T L   PK +N   + D+RPI+C     I LYK+I ++L  R+Q ++S VIS 
Sbjct: 448  LLKQWNATTLVLIPKITNASKMNDFRPISCNDFGPITLYKVIARLLTNRLQCLLSQVISP 507

Query: 312  TQAEFIPGKKVADNVILTHELVKGYNRKNVSPRCMI---------DR*WNVSNGELFHFG 464
             Q+ F+PG+ +A+NV+L  ELV+GYNR+N+ PR M+            W+     L   G
Sbjct: 508  FQSAFLPGRFLAENVLLATELVQGYNRQNIDPRGMLKVDLRKAFDSIRWDFIISALKAIG 567

Query: 465  ------*W*AH*A-----F*CCNG-----FKARR------PISSLLFVVVMEYLSRNLAD 578
                   W            C NG     FK+ R      P+S  LFV+ ME  S  L  
Sbjct: 568  IPDRFVYWITQCISTPTFSVCVNGNTGGFFKSTRGLRQGNPLSPFLFVLAMEVFSSLLNS 627

Query: 579  FKTVNTFKNHPKFKKLDIAHLSFLDDLLLFARGDQQSLSLLHEKFNIFTAASGLRENLNK 758
                     HPK   L I+HL F DD+++F  G   SL  + E    F   SGL  N  K
Sbjct: 628  RFQAGYIHYHPKTSPLSISHLMFADDIMVFFDGGSSSLHGISEALEDFAFWSGLVLNREK 687

Query: 759  S 761
            +
Sbjct: 688  T 688



 Score = 34.7 bits (78), Expect(2) = 1e-25
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +2

Query: 5   KEILDALNSIGDDKAPRVDDFNAFFYKKAWSVIKEDICEVVKEFFAT 145
           ++I  A  S   +K    D F   F+K+ WSVI  ++ + V EFF +
Sbjct: 399 QDIKSAFFSFPSNKTSGPDGFPVEFFKETWSVIGTEVTDAVSEFFTS 445


>ref|XP_004237698.1| PREDICTED: uncharacterized protein LOC101249454 [Solanum
           lycopersicum]
          Length = 225

 Score =  116 bits (290), Expect(2) = 1e-25
 Identities = 52/93 (55%), Positives = 71/93 (76%), Gaps = 3/93 (3%)
 Frame = +3

Query: 150 KMLKAINCTV---LPKDSNPYNIRDYRPIACCIVLYKIITKILARRIQKVISSVISETQA 320
           K+ KA NCT+   +PK  NP  +++YR IACC VLY II+K+L  R+  VI S+I ++QA
Sbjct: 129 KLHKAFNCTLVSFIPKAQNPETVKEYRTIACCTVLYNIISKVLTNRLHSVIQSIICDSQA 188

Query: 321 EFIPGKKVADNVILTHELVKGYNRKNVSPRCMI 419
            FIPG+K+ADN++LTHELVK Y RK++SPR M+
Sbjct: 189 GFIPGRKIADNIVLTHELVKAYTRKHISPRSML 221



 Score = 26.9 bits (58), Expect(2) = 1e-25
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +2

Query: 2   DKEILDALNSIGDDKAP 52
           ++EI D L SIG+DKAP
Sbjct: 111 EQEIYDGLKSIGNDKAP 127


>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1750

 Score = 91.3 bits (225), Expect(2) = 2e-25
 Identities = 71/244 (29%), Positives = 111/244 (45%), Gaps = 39/244 (15%)
 Frame = +3

Query: 147  KKMLKAINCTVLPKDSNPYNIRDYRPIACCIVLYKIITKILARRIQKVISSVISETQAEF 326
            K  +   N  ++PK +NP  + DYRPIA C VLYK+I+K L  R++  ++S++S++QA F
Sbjct: 863  KPSINHTNICMIPKITNPTTLSDYRPIALCNVLYKVISKCLVNRLKSHLNSIVSDSQAAF 922

Query: 327  IPGKKVADNVILTHELVKGYN-RKNVSPRCM---------IDR-*WNVSNGELFHFG--- 464
            IPG+ + DNV++ HE++     RK VS   M          DR  W+     +  FG   
Sbjct: 923  IPGRIINDNVMIAHEVMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCN 982

Query: 465  *W*A-------------------H*AF*CCNGFKARRPISSLLFVVVMEYLSR------N 569
             W                     H       G +   P+S  LF++  + LS       +
Sbjct: 983  KWIGWIMAAVKSVHYSVLINGSPHGYITPTRGIRQGDPLSPYLFILCGDILSHLINGRAS 1042

Query: 570  LADFKTVNTFKNHPKFKKLDIAHLSFLDDLLLFARGDQQSLSLLHEKFNIFTAASGLREN 749
              D + V      P      I HL F DD L F + + ++   L + F+++   SG + N
Sbjct: 1043 SGDLRGVRIGNGAPA-----ITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQKIN 1097

Query: 750  LNKS 761
            + KS
Sbjct: 1098 VQKS 1101



 Score = 51.6 bits (122), Expect(2) = 2e-25
 Identities = 24/48 (50%), Positives = 29/48 (60%)
 Frame = +2

Query: 2   DKEILDALNSIGDDKAPRVDDFNAFFYKKAWSVIKEDICEVVKEFFAT 145
           D EI DA+  IGDDKAP  D   A FYK  W ++  D+   VK+FF T
Sbjct: 812 DTEIYDAICQIGDDKAPGPDGLTARFYKNCWDIVGYDVILEVKKFFET 859


>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1524

 Score = 91.3 bits (225), Expect(2) = 2e-25
 Identities = 71/244 (29%), Positives = 111/244 (45%), Gaps = 39/244 (15%)
 Frame = +3

Query: 147  KKMLKAINCTVLPKDSNPYNIRDYRPIACCIVLYKIITKILARRIQKVISSVISETQAEF 326
            K  +   N  ++PK +NP  + DYRPIA C VLYK+I+K L  R++  ++S++S++QA F
Sbjct: 637  KPSINHTNICMIPKITNPTTLSDYRPIALCNVLYKVISKCLVNRLKSHLNSIVSDSQAAF 696

Query: 327  IPGKKVADNVILTHELVKGYN-RKNVSPRCM---------IDR-*WNVSNGELFHFG--- 464
            IPG+ + DNV++ HE++     RK VS   M          DR  W+     +  FG   
Sbjct: 697  IPGRIINDNVMIAHEVMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCN 756

Query: 465  *W*A-------------------H*AF*CCNGFKARRPISSLLFVVVMEYLSR------N 569
             W                     H       G +   P+S  LF++  + LS       +
Sbjct: 757  KWIGWIMAAVKSVHYSVLINGSPHGYITPTRGIRQGDPLSPYLFILCGDILSHLINGRAS 816

Query: 570  LADFKTVNTFKNHPKFKKLDIAHLSFLDDLLLFARGDQQSLSLLHEKFNIFTAASGLREN 749
              D + V      P      I HL F DD L F + + ++   L + F+++   SG + N
Sbjct: 817  SGDLRGVRIGNGAPA-----ITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQKIN 871

Query: 750  LNKS 761
            + KS
Sbjct: 872  VQKS 875



 Score = 51.6 bits (122), Expect(2) = 2e-25
 Identities = 24/48 (50%), Positives = 29/48 (60%)
 Frame = +2

Query: 2   DKEILDALNSIGDDKAPRVDDFNAFFYKKAWSVIKEDICEVVKEFFAT 145
           D EI DA+  IGDDKAP  D   A FYK  W ++  D+   VK+FF T
Sbjct: 586 DTEIYDAICQIGDDKAPGPDGLTARFYKNCWDIVGYDVILEVKKFFET 633


>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
            42.57) [Arabidopsis thaliana]
          Length = 1662

 Score = 92.4 bits (228), Expect(2) = 4e-25
 Identities = 71/244 (29%), Positives = 114/244 (46%), Gaps = 39/244 (15%)
 Frame = +3

Query: 147  KKMLKAINCTVLPKDSNPYNIRDYRPIACCIVLYKIITKILARRIQKVISSVISETQAEF 326
            K+ +   N  ++PK +NP  + DYRPIA C VLYKII+K L  R++  + +++S++QA F
Sbjct: 863  KQSINHTNICMIPKITNPETLSDYRPIALCNVLYKIISKCLVERLKGHLDAIVSDSQAAF 922

Query: 327  IPGKKVADNVILTHELVKGY-NRKNVSPRCM---------IDR-*WNVSNGELFHFG--- 464
            IPG+ V DNV++ HE++     RK VS   M          DR  WN     +  FG   
Sbjct: 923  IPGRLVNDNVMIAHEMMHSLKTRKRVSQSYMAVKTDVSKAYDRVEWNFLETTMRLFGFSE 982

Query: 465  *W-------------------*AH*AF*CCNGFKARRPISSLLFVV---VMEYLSRNL-- 572
             W                     H       G +   P+S  LF++   ++ +L +N   
Sbjct: 983  TWIKWIMGAVKSVNYSVLVNGIPHGTIQPQRGIRQGDPLSPYLFILCADILNHLIKNRVA 1042

Query: 573  -ADFKTVNTFKNHPKFKKLDIAHLSFLDDLLLFARGDQQSLSLLHEKFNIFTAASGLREN 749
              D + +      P      + HL F DD L F + + ++   L + F+++   SG + N
Sbjct: 1043 EGDIRGIRIGNGVP-----GVTHLQFADDSLFFCQSNVRNCQALKDVFDVYEYYSGQKIN 1097

Query: 750  LNKS 761
            ++KS
Sbjct: 1098 MSKS 1101



 Score = 49.3 bits (116), Expect(2) = 4e-25
 Identities = 23/48 (47%), Positives = 29/48 (60%)
 Frame = +2

Query: 2   DKEILDALNSIGDDKAPRVDDFNAFFYKKAWSVIKEDICEVVKEFFAT 145
           D EI +A+  IGDDKAP  D   A FYK  W ++  D+ + VK FF T
Sbjct: 812 DLEIYNAICHIGDDKAPGPDGLTARFYKSCWEIVGPDVIKEVKIFFRT 859


>emb|CAB40051.1| putative protein [Arabidopsis thaliana] gi|7267781|emb|CAB81184.1|
            putative protein [Arabidopsis thaliana]
          Length = 1294

 Score = 92.4 bits (228), Expect(2) = 4e-25
 Identities = 71/244 (29%), Positives = 114/244 (46%), Gaps = 39/244 (15%)
 Frame = +3

Query: 147  KKMLKAINCTVLPKDSNPYNIRDYRPIACCIVLYKIITKILARRIQKVISSVISETQAEF 326
            K+ +   N  ++PK +NP  + DYRPIA C VLYKII+K L  R++  + +++S++QA F
Sbjct: 843  KQSINHTNICMIPKITNPETLSDYRPIALCNVLYKIISKCLVERLKGHLDAIVSDSQAAF 902

Query: 327  IPGKKVADNVILTHELVKGY-NRKNVSPRCM---------IDR-*WNVSNGELFHFG--- 464
            IPG+ V DNV++ HE++     RK VS   M          DR  WN     +  FG   
Sbjct: 903  IPGRLVNDNVMIAHEMMHSLKTRKRVSQSYMAVKTDVSKAYDRVEWNFLETTMRLFGFSE 962

Query: 465  *W-------------------*AH*AF*CCNGFKARRPISSLLFVV---VMEYLSRNL-- 572
             W                     H       G +   P+S  LF++   ++ +L +N   
Sbjct: 963  TWIKWIMGAVKSVNYSVLVNGIPHGTIQPQRGIRQGDPLSPYLFILCADILNHLIKNRVA 1022

Query: 573  -ADFKTVNTFKNHPKFKKLDIAHLSFLDDLLLFARGDQQSLSLLHEKFNIFTAASGLREN 749
              D + +      P      + HL F DD L F + + ++   L + F+++   SG + N
Sbjct: 1023 EGDIRGIRIGNGVP-----GVTHLQFADDSLFFCQSNVRNCQALKDVFDVYEYYSGQKIN 1077

Query: 750  LNKS 761
            ++KS
Sbjct: 1078 MSKS 1081



 Score = 49.3 bits (116), Expect(2) = 4e-25
 Identities = 23/48 (47%), Positives = 29/48 (60%)
 Frame = +2

Query: 2   DKEILDALNSIGDDKAPRVDDFNAFFYKKAWSVIKEDICEVVKEFFAT 145
           D EI +A+  IGDDKAP  D   A FYK  W ++  D+ + VK FF T
Sbjct: 792 DLEIYNAICHIGDDKAPGPDGLTARFYKSCWEIVGPDVIKEVKIFFRT 839