BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atropa21_contig00024135
         (472 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006358053.1| PREDICTED: KH domain-containing protein At4g...   270   1e-70
ref|XP_004234567.1| PREDICTED: KH domain-containing protein At4g...   269   2e-70
ref|XP_003633728.1| PREDICTED: KH domain-containing protein At4g...   206   3e-51
emb|CAN72739.1| hypothetical protein VITISV_027256 [Vitis vinifera]   204   1e-50
ref|XP_004304132.1| PREDICTED: KH domain-containing protein At4g...   199   2e-49
ref|XP_006430782.1| hypothetical protein CICLE_v10011187mg [Citr...   194   8e-48
ref|XP_006430781.1| hypothetical protein CICLE_v10011187mg [Citr...   194   8e-48
ref|XP_006482257.1| PREDICTED: KH domain-containing protein At4g...   194   1e-47
gb|AEV43362.1| poly C-binding protein [Citrus sinensis]               194   1e-47
gb|EMJ18848.1| hypothetical protein PRUPE_ppa027198mg, partial [...   188   6e-46
gb|EOY04206.1| RNA-binding KH domain-containing protein isoform ...   187   9e-46
gb|EOY04205.1| RNA-binding KH domain-containing protein isoform ...   187   9e-46
gb|EOY04203.1| RNA-binding KH domain-containing protein isoform ...   187   9e-46
gb|EOY04202.1| RNA-binding KH domain-containing protein isoform ...   187   9e-46
ref|XP_002516721.1| Poly(rC)-binding protein, putative [Ricinus ...   187   1e-45
ref|XP_004306018.1| PREDICTED: KH domain-containing protein At4g...   185   6e-45
ref|XP_002329331.1| predicted protein [Populus trichocarpa] gi|5...   184   8e-45
ref|XP_006661902.1| PREDICTED: KH domain-containing protein At4g...   150   2e-34
gb|AAP54423.2| KH domain containing protein, expressed [Oryza sa...   148   6e-34
ref|NP_001064947.1| Os10g0495000 [Oryza sativa Japonica Group] g...   148   6e-34

>ref|XP_006358053.1| PREDICTED: KH domain-containing protein At4g18375-like isoform X1
           [Solanum tuberosum] gi|565383832|ref|XP_006358054.1|
           PREDICTED: KH domain-containing protein At4g18375-like
           isoform X2 [Solanum tuberosum]
          Length = 705

 Score =  270 bits (690), Expect = 1e-70
 Identities = 134/156 (85%), Positives = 146/156 (93%)
 Frame = +3

Query: 3   LISSPSTKLARKQDTDKNNENPETREENDVMEPHCAAQDALLKVHNRIVEEDLRGVQDEN 182
           ++SSPSTKLAR+Q+ DKNN+NPET+EEN  MEPHCAAQDALLKVHNRIVEEDL+GVQ+E+
Sbjct: 93  IVSSPSTKLARRQNNDKNNDNPETKEENCSMEPHCAAQDALLKVHNRIVEEDLQGVQNED 152

Query: 183 NNEIEIITRLLVPNTLVGCLLGRKGDVIQKLRSETGASIRVLSAEHLPACAMSTDELVQI 362
            +E  IITRLLVPN LVGCLLGRKGDVIQKLRSETGASIRVLSAEHLPACAM+TDELVQI
Sbjct: 153 KSETVIITRLLVPNNLVGCLLGRKGDVIQKLRSETGASIRVLSAEHLPACAMTTDELVQI 212

Query: 363 SGKPALVRKALYEVSTLLHQNPRKDKPTLSFSMVHG 470
           SGKPALV+KALYEVSTLLHQNPRKDKP  SF MVHG
Sbjct: 213 SGKPALVKKALYEVSTLLHQNPRKDKPISSFPMVHG 248



 Score = 77.4 bits (189), Expect = 2e-12
 Identities = 42/114 (36%), Positives = 66/114 (57%)
 Frame = +3

Query: 96  EPHCAAQDALLKVHNRIVEEDLRGVQDENNNEIEIITRLLVPNTLVGCLLGRKGDVIQKL 275
           +P     DA+L++ ++  E   +G+         + TRLL P+  VGC++G+ G VI ++
Sbjct: 373 DPRSRTIDAILQLQSKTSEFSDKGI---------VTTRLLFPSNKVGCIIGQGGQVINEM 423

Query: 276 RSETGASIRVLSAEHLPACAMSTDELVQISGKPALVRKALYEVSTLLHQNPRKD 437
           R  T A IRVLS +  P CA + +ELVQISG   + + AL E+S+ L +   +D
Sbjct: 424 RRRTQADIRVLSKDDKPRCASADEELVQISGSIGVAKDALVEISSRLRERCLRD 477


>ref|XP_004234567.1| PREDICTED: KH domain-containing protein At4g18375-like [Solanum
           lycopersicum]
          Length = 707

 Score =  269 bits (688), Expect = 2e-70
 Identities = 135/156 (86%), Positives = 145/156 (92%)
 Frame = +3

Query: 3   LISSPSTKLARKQDTDKNNENPETREENDVMEPHCAAQDALLKVHNRIVEEDLRGVQDEN 182
           +ISSPSTKLAR+Q+ DKNN+NPET+EEN  MEPHCAAQDALLKVHNRIVEEDL GVQ+E+
Sbjct: 93  IISSPSTKLARRQNNDKNNDNPETKEENYSMEPHCAAQDALLKVHNRIVEEDLLGVQNED 152

Query: 183 NNEIEIITRLLVPNTLVGCLLGRKGDVIQKLRSETGASIRVLSAEHLPACAMSTDELVQI 362
            +E  IITRLLVPN LVGCLLGRKGDVIQKLRSETGASIRVLSAEHLPACAM+TDELVQI
Sbjct: 153 KSEAVIITRLLVPNNLVGCLLGRKGDVIQKLRSETGASIRVLSAEHLPACAMTTDELVQI 212

Query: 363 SGKPALVRKALYEVSTLLHQNPRKDKPTLSFSMVHG 470
           SGKPALV+KALYEVSTLLHQNPRKDKP  SF MVHG
Sbjct: 213 SGKPALVKKALYEVSTLLHQNPRKDKPISSFPMVHG 248



 Score = 77.8 bits (190), Expect = 1e-12
 Identities = 42/114 (36%), Positives = 66/114 (57%)
 Frame = +3

Query: 96  EPHCAAQDALLKVHNRIVEEDLRGVQDENNNEIEIITRLLVPNTLVGCLLGRKGDVIQKL 275
           +P     DA+L++ ++  E   +G+         + TRLL P+  VGC++G+ G VI ++
Sbjct: 373 DPRSRTIDAILQLQSKTSEFSDKGI---------VTTRLLFPSNKVGCIIGQGGQVINEM 423

Query: 276 RSETGASIRVLSAEHLPACAMSTDELVQISGKPALVRKALYEVSTLLHQNPRKD 437
           R  T A IRVLS +  P CA + +ELVQISG   + + AL E+S+ L +   +D
Sbjct: 424 RRRTQADIRVLSKDEKPRCASADEELVQISGSIGVAKDALVEISSRLRERCLRD 477


>ref|XP_003633728.1| PREDICTED: KH domain-containing protein At4g18375-like [Vitis
           vinifera] gi|296087281|emb|CBI33655.3| unnamed protein
           product [Vitis vinifera]
          Length = 676

 Score =  206 bits (523), Expect = 3e-51
 Identities = 107/158 (67%), Positives = 127/158 (80%), Gaps = 2/158 (1%)
 Frame = +3

Query: 3   LISSPSTKLARKQDTDKNNENPETREENDVMEPHCAAQDALLKVHNRIVEEDL-RGVQDE 179
           +I S  TK  ++ D+   NE+PE  EE D MEPHC AQDAL+KVH RI+EEDL  G + E
Sbjct: 93  IIYSAPTKNPKEHDS---NEDPEMEEEQDHMEPHCPAQDALMKVHERIIEEDLFGGTEFE 149

Query: 180 NNNEIEIIT-RLLVPNTLVGCLLGRKGDVIQKLRSETGASIRVLSAEHLPACAMSTDELV 356
           ++NE  ++T RLLVPN +VGCLLG++GDVIQ+LRSETGA+IRVL AEHLP CAMS+DELV
Sbjct: 150 DDNENTVVTARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPAEHLPTCAMSSDELV 209

Query: 357 QISGKPALVRKALYEVSTLLHQNPRKDKPTLSFSMVHG 470
           QISGKPA+ +KALYEVSTLLHQNPRKDKP  SF M  G
Sbjct: 210 QISGKPAVAKKALYEVSTLLHQNPRKDKPPSSFPMSFG 247



 Score = 72.8 bits (177), Expect = 4e-11
 Identities = 43/113 (38%), Positives = 63/113 (55%)
 Frame = +3

Query: 99  PHCAAQDALLKVHNRIVEEDLRGVQDENNNEIEIITRLLVPNTLVGCLLGRKGDVIQKLR 278
           P     +A+L++ N+  E   +G          + TRLLVP++ VGC+LG+ G VI ++R
Sbjct: 372 PRSQTIEAILQLQNKTSEYSDKG---------GMTTRLLVPSSKVGCILGQGGHVINEMR 422

Query: 279 SETGASIRVLSAEHLPACAMSTDELVQISGKPALVRKALYEVSTLLHQNPRKD 437
             T A IRV S E  P CA   +ELVQISG   + + AL E+++ L     +D
Sbjct: 423 RRTQADIRVYSKEDKPKCASDDEELVQISGNFGVAKDALAEIASRLRVRCLRD 475


>emb|CAN72739.1| hypothetical protein VITISV_027256 [Vitis vinifera]
          Length = 668

 Score =  204 bits (518), Expect = 1e-50
 Identities = 106/158 (67%), Positives = 127/158 (80%), Gaps = 2/158 (1%)
 Frame = +3

Query: 3   LISSPSTKLARKQDTDKNNENPETREENDVMEPHCAAQDALLKVHNRIVEEDL-RGVQDE 179
           +I S  TK  ++ ++   NE+PE  EE D MEPHC AQDAL+KVH RI+EEDL  G + E
Sbjct: 121 IIYSAPTKNPKEHNS---NEDPEREEEQDHMEPHCPAQDALMKVHERIIEEDLFGGTEFE 177

Query: 180 NNNEIEIIT-RLLVPNTLVGCLLGRKGDVIQKLRSETGASIRVLSAEHLPACAMSTDELV 356
           ++NE  ++T RLLVPN +VGCLLG++GDVIQ+LRSETGA+IRVL AEHLP CAMS+DELV
Sbjct: 178 DDNENTVVTARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPAEHLPTCAMSSDELV 237

Query: 357 QISGKPALVRKALYEVSTLLHQNPRKDKPTLSFSMVHG 470
           QISGKPA+ +KALYEVSTLLHQNPRKDKP  SF M  G
Sbjct: 238 QISGKPAVAKKALYEVSTLLHQNPRKDKPPSSFPMSFG 275



 Score = 72.8 bits (177), Expect = 4e-11
 Identities = 43/113 (38%), Positives = 63/113 (55%)
 Frame = +3

Query: 99  PHCAAQDALLKVHNRIVEEDLRGVQDENNNEIEIITRLLVPNTLVGCLLGRKGDVIQKLR 278
           P     +A+L++ N+  E   +G          + TRLLVP++ VGC+LG+ G VI ++R
Sbjct: 400 PRSQTIEAILQLQNKTSEYSDKG---------GMTTRLLVPSSKVGCILGQGGHVINEMR 450

Query: 279 SETGASIRVLSAEHLPACAMSTDELVQISGKPALVRKALYEVSTLLHQNPRKD 437
             T A IRV S E  P CA   +ELVQISG   + + AL E+++ L     +D
Sbjct: 451 RRTQADIRVYSKEDKPKCASDDEELVQISGNFGVAKDALAEIASRLRVRCLRD 503


>ref|XP_004304132.1| PREDICTED: KH domain-containing protein At4g18375-like [Fragaria
           vesca subsp. vesca]
          Length = 760

 Score =  199 bits (507), Expect = 2e-49
 Identities = 103/157 (65%), Positives = 126/157 (80%), Gaps = 1/157 (0%)
 Frame = +3

Query: 3   LISSPSTKLARKQDTDKNNENPETREENDVMEPHCAAQDALLKVHNRIVEEDLR-GVQDE 179
           +I SP TK++RKQ++D   E+    +E   +EPHCAAQDALLKVH+RIVEEDL  GV  +
Sbjct: 94  IIFSPPTKISRKQNSD---EDSHKADEQKPLEPHCAAQDALLKVHDRIVEEDLYDGVTFD 150

Query: 180 NNNEIEIITRLLVPNTLVGCLLGRKGDVIQKLRSETGASIRVLSAEHLPACAMSTDELVQ 359
           ++NE  ++TRLLVPN LVGCLLG++GDVIQ+LRSET A+IRVL A+ LP CAM TDELVQ
Sbjct: 151 DDNENIVVTRLLVPNNLVGCLLGKRGDVIQRLRSETRANIRVLPADQLPTCAMDTDELVQ 210

Query: 360 ISGKPALVRKALYEVSTLLHQNPRKDKPTLSFSMVHG 470
           ISGKP + +KALYEVSTLLHQNPRKDKP L  ++  G
Sbjct: 211 ISGKPDVAKKALYEVSTLLHQNPRKDKPPLGLAIPFG 247



 Score = 74.7 bits (182), Expect = 1e-11
 Identities = 44/113 (38%), Positives = 64/113 (56%)
 Frame = +3

Query: 99  PHCAAQDALLKVHNRIVEEDLRGVQDENNNEIEIITRLLVPNTLVGCLLGRKGDVIQKLR 278
           P     +A+L++ N+  E   +G          I TRLLVP++ VGC+LG+ G VI ++R
Sbjct: 370 PRSQTIEAILQLQNKASELSDKGT---------ITTRLLVPSSKVGCILGQGGQVINEMR 420

Query: 279 SETGASIRVLSAEHLPACAMSTDELVQISGKPALVRKALYEVSTLLHQNPRKD 437
             T A IRV S +  P CA   +ELVQISG  A+ + AL E+++ L     +D
Sbjct: 421 RRTQADIRVYSKDDRPKCADEDEELVQISGNFAVAKDALAEITSRLRIRTLRD 473


>ref|XP_006430782.1| hypothetical protein CICLE_v10011187mg [Citrus clementina]
           gi|557532839|gb|ESR44022.1| hypothetical protein
           CICLE_v10011187mg [Citrus clementina]
          Length = 528

 Score =  194 bits (494), Expect = 8e-48
 Identities = 100/158 (63%), Positives = 125/158 (79%), Gaps = 2/158 (1%)
 Frame = +3

Query: 3   LISSPSTKLARKQDTDKNNENPETREENDVMEPHCAAQDALLKVHNRIVEEDLRG--VQD 176
           +I S  TK+A+ Q+ D ++   ET++E+  MEPHCAAQDALLKVH+RI+EEDL G    D
Sbjct: 95  IIYSSPTKIAKTQNKDDDSA-AETKKES--MEPHCAAQDALLKVHDRIIEEDLFGGMASD 151

Query: 177 ENNNEIEIITRLLVPNTLVGCLLGRKGDVIQKLRSETGASIRVLSAEHLPACAMSTDELV 356
           ++N    +  RLLVPN +VGCLLG++GDVIQ+LRSETGA+IRVL A+ LP CAM+TDELV
Sbjct: 152 DDNENSTVTARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDELV 211

Query: 357 QISGKPALVRKALYEVSTLLHQNPRKDKPTLSFSMVHG 470
           QISGKP + ++ALYEVSTLLHQNPRKDKP  SF   +G
Sbjct: 212 QISGKPNVAKRALYEVSTLLHQNPRKDKPPSSFPQAYG 249



 Score = 76.3 bits (186), Expect = 4e-12
 Identities = 44/113 (38%), Positives = 63/113 (55%)
 Frame = +3

Query: 99  PHCAAQDALLKVHNRIVEEDLRGVQDENNNEIEIITRLLVPNTLVGCLLGRKGDVIQKLR 278
           P     DA+L++ N+  E   +G          I TRLLVP++ VGC+LG+ G VI ++R
Sbjct: 375 PRSQTIDAILQLQNKTSEFSEKGT---------ITTRLLVPSSKVGCILGQGGHVINEMR 425

Query: 279 SETGASIRVLSAEHLPACAMSTDELVQISGKPALVRKALYEVSTLLHQNPRKD 437
             T A IRV S +  P CA   +ELVQISG   + + AL E+++ L     +D
Sbjct: 426 RRTQADIRVYSKDDKPKCASEDEELVQISGNFGVAKDALTEIASRLRARTLRD 478


>ref|XP_006430781.1| hypothetical protein CICLE_v10011187mg [Citrus clementina]
           gi|557532838|gb|ESR44021.1| hypothetical protein
           CICLE_v10011187mg [Citrus clementina]
          Length = 710

 Score =  194 bits (494), Expect = 8e-48
 Identities = 100/158 (63%), Positives = 125/158 (79%), Gaps = 2/158 (1%)
 Frame = +3

Query: 3   LISSPSTKLARKQDTDKNNENPETREENDVMEPHCAAQDALLKVHNRIVEEDLRG--VQD 176
           +I S  TK+A+ Q+ D ++   ET++E+  MEPHCAAQDALLKVH+RI+EEDL G    D
Sbjct: 95  IIYSSPTKIAKTQNKDDDSA-AETKKES--MEPHCAAQDALLKVHDRIIEEDLFGGMASD 151

Query: 177 ENNNEIEIITRLLVPNTLVGCLLGRKGDVIQKLRSETGASIRVLSAEHLPACAMSTDELV 356
           ++N    +  RLLVPN +VGCLLG++GDVIQ+LRSETGA+IRVL A+ LP CAM+TDELV
Sbjct: 152 DDNENSTVTARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDELV 211

Query: 357 QISGKPALVRKALYEVSTLLHQNPRKDKPTLSFSMVHG 470
           QISGKP + ++ALYEVSTLLHQNPRKDKP  SF   +G
Sbjct: 212 QISGKPNVAKRALYEVSTLLHQNPRKDKPPSSFPQAYG 249



 Score = 76.3 bits (186), Expect = 4e-12
 Identities = 44/113 (38%), Positives = 63/113 (55%)
 Frame = +3

Query: 99  PHCAAQDALLKVHNRIVEEDLRGVQDENNNEIEIITRLLVPNTLVGCLLGRKGDVIQKLR 278
           P     DA+L++ N+  E   +G          I TRLLVP++ VGC+LG+ G VI ++R
Sbjct: 375 PRSQTIDAILQLQNKTSEFSEKGT---------ITTRLLVPSSKVGCILGQGGHVINEMR 425

Query: 279 SETGASIRVLSAEHLPACAMSTDELVQISGKPALVRKALYEVSTLLHQNPRKD 437
             T A IRV S +  P CA   +ELVQISG   + + AL E+++ L     +D
Sbjct: 426 RRTQADIRVYSKDDKPKCASEDEELVQISGNFGVAKDALTEIASRLRARTLRD 478


>ref|XP_006482257.1| PREDICTED: KH domain-containing protein At4g18375 [Citrus sinensis]
          Length = 715

 Score =  194 bits (493), Expect = 1e-47
 Identities = 100/158 (63%), Positives = 125/158 (79%), Gaps = 2/158 (1%)
 Frame = +3

Query: 3   LISSPSTKLARKQDTDKNNENPETREENDVMEPHCAAQDALLKVHNRIVEEDLRG--VQD 176
           +I S  TK+A+K + D ++   ET++E+  MEPHCAAQDALLKVH+RI+EEDL G    D
Sbjct: 95  IIYSSPTKIAKKVNKDDDSA-AETKKES--MEPHCAAQDALLKVHDRIIEEDLFGGMASD 151

Query: 177 ENNNEIEIITRLLVPNTLVGCLLGRKGDVIQKLRSETGASIRVLSAEHLPACAMSTDELV 356
           ++N    +  RLLVPN +VGCLLG++GDVIQ+LRSETGA+IRVL A+ LP CAM+TDELV
Sbjct: 152 DDNENSTVTARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDELV 211

Query: 357 QISGKPALVRKALYEVSTLLHQNPRKDKPTLSFSMVHG 470
           QISGKP + ++ALYEVSTLLHQNPRKDKP  SF   +G
Sbjct: 212 QISGKPNVAKRALYEVSTLLHQNPRKDKPPSSFPQAYG 249



 Score = 76.3 bits (186), Expect = 4e-12
 Identities = 44/113 (38%), Positives = 63/113 (55%)
 Frame = +3

Query: 99  PHCAAQDALLKVHNRIVEEDLRGVQDENNNEIEIITRLLVPNTLVGCLLGRKGDVIQKLR 278
           P     DA+L++ N+  E   +G          I TRLLVP++ VGC+LG+ G VI ++R
Sbjct: 375 PRSQTIDAILQLQNKTSEFSEKGT---------ITTRLLVPSSKVGCILGQGGHVINEMR 425

Query: 279 SETGASIRVLSAEHLPACAMSTDELVQISGKPALVRKALYEVSTLLHQNPRKD 437
             T A IRV S +  P CA   +ELVQISG   + + AL E+++ L     +D
Sbjct: 426 RRTQADIRVYSKDDKPKCASEDEELVQISGNFGVAKDALTEIASRLRARTLRD 478


>gb|AEV43362.1| poly C-binding protein [Citrus sinensis]
          Length = 569

 Score =  194 bits (493), Expect = 1e-47
 Identities = 100/158 (63%), Positives = 125/158 (79%), Gaps = 2/158 (1%)
 Frame = +3

Query: 3   LISSPSTKLARKQDTDKNNENPETREENDVMEPHCAAQDALLKVHNRIVEEDLRG--VQD 176
           +I S  TK+A+ Q+ D ++   ET++E+  MEPHCAAQDALLKVH+RI+EEDL G    D
Sbjct: 95  IIYSSPTKIAKTQNKDDDSA-AETKKES--MEPHCAAQDALLKVHDRIIEEDLFGGMASD 151

Query: 177 ENNNEIEIITRLLVPNTLVGCLLGRKGDVIQKLRSETGASIRVLSAEHLPACAMSTDELV 356
           ++N    I  RLLVPN +VGCLLG++GDVIQ+LRSETGA+IRVL A+ LP CAM+TDE+V
Sbjct: 152 DDNENSTITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMV 211

Query: 357 QISGKPALVRKALYEVSTLLHQNPRKDKPTLSFSMVHG 470
           QISGKP + ++ALYEVSTLLHQNPRKDKP  SF   +G
Sbjct: 212 QISGKPNVAKRALYEVSTLLHQNPRKDKPPSSFPQAYG 249


>gb|EMJ18848.1| hypothetical protein PRUPE_ppa027198mg, partial [Prunus persica]
          Length = 576

 Score =  188 bits (478), Expect = 6e-46
 Identities = 102/157 (64%), Positives = 122/157 (77%), Gaps = 4/157 (2%)
 Frame = +3

Query: 3   LISSPSTKLARKQDTDKNNENPETREENDV--MEPHCAAQDALLKVHNRIVEEDL-RGVQ 173
           +I S  TK++ KQ  D ++      EEN++  M+PHCAAQDALLKVHNRIVEEDL  GV 
Sbjct: 96  IIFSSPTKISSKQTNDGDSS-----EENELEPMDPHCAAQDALLKVHNRIVEEDLFGGVT 150

Query: 174 DENNNEIEIIT-RLLVPNTLVGCLLGRKGDVIQKLRSETGASIRVLSAEHLPACAMSTDE 350
            +++NE  ++T RLLVPN +VGCLLG+ GDVIQ+LRSET ASIRVL A+ LP CAM TDE
Sbjct: 151 FDDDNENSVVTARLLVPNNMVGCLLGKGGDVIQRLRSETSASIRVLPADQLPTCAMETDE 210

Query: 351 LVQISGKPALVRKALYEVSTLLHQNPRKDKPTLSFSM 461
           LVQISGKP + ++ALYEVSTLLHQNPRKDKP   F M
Sbjct: 211 LVQISGKPDVTKRALYEVSTLLHQNPRKDKPPSGFPM 247



 Score = 74.7 bits (182), Expect = 1e-11
 Identities = 42/107 (39%), Positives = 63/107 (58%)
 Frame = +3

Query: 117 DALLKVHNRIVEEDLRGVQDENNNEIEIITRLLVPNTLVGCLLGRKGDVIQKLRSETGAS 296
           +A+L++ N+  E   +G+         I TRLLVP++ VGC+LG+ G VI ++R  T A 
Sbjct: 381 EAILELQNKTSELSDKGI---------ITTRLLVPSSKVGCILGQGGQVINEMRRRTQAD 431

Query: 297 IRVLSAEHLPACAMSTDELVQISGKPALVRKALYEVSTLLHQNPRKD 437
           IRV S +  P CA   +ELVQISG   + + AL E+++ L     +D
Sbjct: 432 IRVYSKDDRPRCAAEDEELVQISGNFGVAKDALAEITSRLRVRTLRD 478


>gb|EOY04206.1| RNA-binding KH domain-containing protein isoform 5 [Theobroma
           cacao]
          Length = 591

 Score =  187 bits (476), Expect = 9e-46
 Identities = 98/158 (62%), Positives = 120/158 (75%), Gaps = 3/158 (1%)
 Frame = +3

Query: 3   LISSPSTKLARKQDTDKNNENPETREENDVMEPHCAAQDALLKVHNRIVEEDLRG---VQ 173
           + SSP     +  D D   EN   ++E  VMEP CAAQDALLKVH++I E+DL G   + 
Sbjct: 97  IYSSPMKVKTQNSDEDSRGENK--KDEVVVMEPCCAAQDALLKVHDQIAEDDLFGGMALD 154

Query: 174 DENNNEIEIITRLLVPNTLVGCLLGRKGDVIQKLRSETGASIRVLSAEHLPACAMSTDEL 353
           D+N N + +  RLLVPN +VGCLLG++GDVIQ+LRSETGASIR+L A+HLPACAM+TDEL
Sbjct: 155 DDNGNTV-VTARLLVPNNMVGCLLGKRGDVIQRLRSETGASIRILPADHLPACAMATDEL 213

Query: 354 VQISGKPALVRKALYEVSTLLHQNPRKDKPTLSFSMVH 467
           VQISGK  + ++ALYEVSTLLHQNPRKD P LSF + H
Sbjct: 214 VQISGKRDVAKRALYEVSTLLHQNPRKDNPPLSFPVPH 251



 Score = 75.5 bits (184), Expect = 7e-12
 Identities = 43/113 (38%), Positives = 63/113 (55%)
 Frame = +3

Query: 99  PHCAAQDALLKVHNRIVEEDLRGVQDENNNEIEIITRLLVPNTLVGCLLGRKGDVIQKLR 278
           P     DA+L++ N+  E   +G          + TRLLVP++ VGC+LG+ G VI ++R
Sbjct: 373 PRSQTIDAILQLQNKTSEFSEKGT---------VTTRLLVPSSKVGCILGQGGHVINEMR 423

Query: 279 SETGASIRVLSAEHLPACAMSTDELVQISGKPALVRKALYEVSTLLHQNPRKD 437
             T A IRV S +  P CA   +ELVQISG   + + AL E+++ L     +D
Sbjct: 424 RRTQADIRVYSKDDKPKCASEDEELVQISGNFGVAKDALAEIASRLRVRTLRD 476


>gb|EOY04205.1| RNA-binding KH domain-containing protein isoform 4 [Theobroma
           cacao]
          Length = 706

 Score =  187 bits (476), Expect = 9e-46
 Identities = 98/158 (62%), Positives = 120/158 (75%), Gaps = 3/158 (1%)
 Frame = +3

Query: 3   LISSPSTKLARKQDTDKNNENPETREENDVMEPHCAAQDALLKVHNRIVEEDLRG---VQ 173
           + SSP     +  D D   EN   ++E  VMEP CAAQDALLKVH++I E+DL G   + 
Sbjct: 97  IYSSPMKVKTQNSDEDSRGENK--KDEVVVMEPCCAAQDALLKVHDQIAEDDLFGGMALD 154

Query: 174 DENNNEIEIITRLLVPNTLVGCLLGRKGDVIQKLRSETGASIRVLSAEHLPACAMSTDEL 353
           D+N N + +  RLLVPN +VGCLLG++GDVIQ+LRSETGASIR+L A+HLPACAM+TDEL
Sbjct: 155 DDNGNTV-VTARLLVPNNMVGCLLGKRGDVIQRLRSETGASIRILPADHLPACAMATDEL 213

Query: 354 VQISGKPALVRKALYEVSTLLHQNPRKDKPTLSFSMVH 467
           VQISGK  + ++ALYEVSTLLHQNPRKD P LSF + H
Sbjct: 214 VQISGKRDVAKRALYEVSTLLHQNPRKDNPPLSFPVPH 251



 Score = 75.5 bits (184), Expect = 7e-12
 Identities = 43/113 (38%), Positives = 63/113 (55%)
 Frame = +3

Query: 99  PHCAAQDALLKVHNRIVEEDLRGVQDENNNEIEIITRLLVPNTLVGCLLGRKGDVIQKLR 278
           P     DA+L++ N+  E   +G          + TRLLVP++ VGC+LG+ G VI ++R
Sbjct: 373 PRSQTIDAILQLQNKTSEFSEKGT---------VTTRLLVPSSKVGCILGQGGHVINEMR 423

Query: 279 SETGASIRVLSAEHLPACAMSTDELVQISGKPALVRKALYEVSTLLHQNPRKD 437
             T A IRV S +  P CA   +ELVQISG   + + AL E+++ L     +D
Sbjct: 424 RRTQADIRVYSKDDKPKCASEDEELVQISGNFGVAKDALAEIASRLRVRTLRD 476


>gb|EOY04203.1| RNA-binding KH domain-containing protein isoform 2 [Theobroma
           cacao]
          Length = 580

 Score =  187 bits (476), Expect = 9e-46
 Identities = 98/158 (62%), Positives = 120/158 (75%), Gaps = 3/158 (1%)
 Frame = +3

Query: 3   LISSPSTKLARKQDTDKNNENPETREENDVMEPHCAAQDALLKVHNRIVEEDLRG---VQ 173
           + SSP     +  D D   EN   ++E  VMEP CAAQDALLKVH++I E+DL G   + 
Sbjct: 97  IYSSPMKVKTQNSDEDSRGENK--KDEVVVMEPCCAAQDALLKVHDQIAEDDLFGGMALD 154

Query: 174 DENNNEIEIITRLLVPNTLVGCLLGRKGDVIQKLRSETGASIRVLSAEHLPACAMSTDEL 353
           D+N N + +  RLLVPN +VGCLLG++GDVIQ+LRSETGASIR+L A+HLPACAM+TDEL
Sbjct: 155 DDNGNTV-VTARLLVPNNMVGCLLGKRGDVIQRLRSETGASIRILPADHLPACAMATDEL 213

Query: 354 VQISGKPALVRKALYEVSTLLHQNPRKDKPTLSFSMVH 467
           VQISGK  + ++ALYEVSTLLHQNPRKD P LSF + H
Sbjct: 214 VQISGKRDVAKRALYEVSTLLHQNPRKDNPPLSFPVPH 251



 Score = 75.5 bits (184), Expect = 7e-12
 Identities = 43/113 (38%), Positives = 63/113 (55%)
 Frame = +3

Query: 99  PHCAAQDALLKVHNRIVEEDLRGVQDENNNEIEIITRLLVPNTLVGCLLGRKGDVIQKLR 278
           P     DA+L++ N+  E   +G          + TRLLVP++ VGC+LG+ G VI ++R
Sbjct: 373 PRSQTIDAILQLQNKTSEFSEKGT---------VTTRLLVPSSKVGCILGQGGHVINEMR 423

Query: 279 SETGASIRVLSAEHLPACAMSTDELVQISGKPALVRKALYEVSTLLHQNPRKD 437
             T A IRV S +  P CA   +ELVQISG   + + AL E+++ L     +D
Sbjct: 424 RRTQADIRVYSKDDKPKCASEDEELVQISGNFGVAKDALAEIASRLRVRTLRD 476


>gb|EOY04202.1| RNA-binding KH domain-containing protein isoform 1 [Theobroma
           cacao] gi|508712307|gb|EOY04204.1| RNA-binding KH
           domain-containing protein isoform 1 [Theobroma cacao]
          Length = 706

 Score =  187 bits (476), Expect = 9e-46
 Identities = 98/158 (62%), Positives = 120/158 (75%), Gaps = 3/158 (1%)
 Frame = +3

Query: 3   LISSPSTKLARKQDTDKNNENPETREENDVMEPHCAAQDALLKVHNRIVEEDLRG---VQ 173
           + SSP     +  D D   EN   ++E  VMEP CAAQDALLKVH++I E+DL G   + 
Sbjct: 97  IYSSPMKVKTQNSDEDSRGENK--KDEVVVMEPCCAAQDALLKVHDQIAEDDLFGGMALD 154

Query: 174 DENNNEIEIITRLLVPNTLVGCLLGRKGDVIQKLRSETGASIRVLSAEHLPACAMSTDEL 353
           D+N N + +  RLLVPN +VGCLLG++GDVIQ+LRSETGASIR+L A+HLPACAM+TDEL
Sbjct: 155 DDNGNTV-VTARLLVPNNMVGCLLGKRGDVIQRLRSETGASIRILPADHLPACAMATDEL 213

Query: 354 VQISGKPALVRKALYEVSTLLHQNPRKDKPTLSFSMVH 467
           VQISGK  + ++ALYEVSTLLHQNPRKD P LSF + H
Sbjct: 214 VQISGKRDVAKRALYEVSTLLHQNPRKDNPPLSFPVPH 251



 Score = 75.5 bits (184), Expect = 7e-12
 Identities = 43/113 (38%), Positives = 63/113 (55%)
 Frame = +3

Query: 99  PHCAAQDALLKVHNRIVEEDLRGVQDENNNEIEIITRLLVPNTLVGCLLGRKGDVIQKLR 278
           P     DA+L++ N+  E   +G          + TRLLVP++ VGC+LG+ G VI ++R
Sbjct: 373 PRSQTIDAILQLQNKTSEFSEKGT---------VTTRLLVPSSKVGCILGQGGHVINEMR 423

Query: 279 SETGASIRVLSAEHLPACAMSTDELVQISGKPALVRKALYEVSTLLHQNPRKD 437
             T A IRV S +  P CA   +ELVQISG   + + AL E+++ L     +D
Sbjct: 424 RRTQADIRVYSKDDKPKCASEDEELVQISGNFGVAKDALAEIASRLRVRTLRD 476


>ref|XP_002516721.1| Poly(rC)-binding protein, putative [Ricinus communis]
           gi|223544094|gb|EEF45619.1| Poly(rC)-binding protein,
           putative [Ricinus communis]
          Length = 537

 Score =  187 bits (475), Expect = 1e-45
 Identities = 96/149 (64%), Positives = 117/149 (78%), Gaps = 2/149 (1%)
 Frame = +3

Query: 3   LISSPSTKLARKQDTDKNNENPETREENDVMEPHCAAQDALLKVHNRIVEEDLRG--VQD 176
           +I S   K++R  +   ++E+     E D+MEP+CAAQDALLKVH+RIVEEDL G    D
Sbjct: 93  IIYSSPEKISRNHN---DHEDLTMENEQDIMEPYCAAQDALLKVHDRIVEEDLFGGMTSD 149

Query: 177 ENNNEIEIITRLLVPNTLVGCLLGRKGDVIQKLRSETGASIRVLSAEHLPACAMSTDELV 356
           ++N    +  RLLVPN +VGCLLG++GDVIQ+LRSETGA+IRVL A+HLP CAMSTDELV
Sbjct: 150 DDNENGFVTARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADHLPTCAMSTDELV 209

Query: 357 QISGKPALVRKALYEVSTLLHQNPRKDKP 443
           QIS KP + +KALYEVSTLLHQNPRKDKP
Sbjct: 210 QISAKPDVAKKALYEVSTLLHQNPRKDKP 238



 Score = 79.3 bits (194), Expect = 5e-13
 Identities = 49/137 (35%), Positives = 79/137 (57%), Gaps = 3/137 (2%)
 Frame = +3

Query: 36  KQDTDKNNENPETREENDVMEPHCAAQDALLKVHNRIVEEDLRGVQDENNNEIE---IIT 206
           +QDT  +    +   E+D      +A +AL    ++ ++  L+ +Q++ ++  E   I T
Sbjct: 339 QQDTGASIHVEDASAESDERVIRVSASEALWNPRSQTIDAILQ-LQNKTSDFSEKGTITT 397

Query: 207 RLLVPNTLVGCLLGRKGDVIQKLRSETGASIRVLSAEHLPACAMSTDELVQISGKPALVR 386
           RLLVP++ VGC+LG+ G VI ++R  T A IRV S +  P CA   +ELVQISGK  + +
Sbjct: 398 RLLVPSSKVGCILGQGGQVINEMRRRTQADIRVYSKDEKPKCASEDEELVQISGKFGVAK 457

Query: 387 KALYEVSTLLHQNPRKD 437
            AL E+++ L     +D
Sbjct: 458 DALAEIASRLRVRTLRD 474


>ref|XP_004306018.1| PREDICTED: KH domain-containing protein At4g18375-like [Fragaria
           vesca subsp. vesca]
          Length = 344

 Score =  185 bits (469), Expect = 6e-45
 Identities = 96/157 (61%), Positives = 124/157 (78%), Gaps = 1/157 (0%)
 Frame = +3

Query: 3   LISSPSTKLARKQDTDKNNENPETREENDVMEPHCAAQDALLKVHNRIVEEDL-RGVQDE 179
           +I SP TK++RKQ++D   E+    +E   +EPHCAAQDALLKVH+RIVEEDL  GV  +
Sbjct: 64  IIFSPPTKISRKQNSD---EDSHKADEQKPLEPHCAAQDALLKVHDRIVEEDLYNGVTFD 120

Query: 180 NNNEIEIITRLLVPNTLVGCLLGRKGDVIQKLRSETGASIRVLSAEHLPACAMSTDELVQ 359
           ++NE  ++TRLLVPN LVGCLLG++G+VI++LRSET A+IRVL A+ LP CA+ TDEL  
Sbjct: 121 DDNENIVVTRLLVPNNLVGCLLGKRGEVIKRLRSETRANIRVLHADQLPTCALDTDEL-- 178

Query: 360 ISGKPALVRKALYEVSTLLHQNPRKDKPTLSFSMVHG 470
           ISGKP + ++ALYEVSTLLH+NPRKDKP L  ++  G
Sbjct: 179 ISGKPDVAKRALYEVSTLLHKNPRKDKPPLGLAIPFG 215


>ref|XP_002329331.1| predicted protein [Populus trichocarpa]
           gi|566171617|ref|XP_006383459.1| hypothetical protein
           POPTR_0005s15690g [Populus trichocarpa]
           gi|550339070|gb|ERP61256.1| hypothetical protein
           POPTR_0005s15690g [Populus trichocarpa]
          Length = 563

 Score =  184 bits (468), Expect = 8e-45
 Identities = 94/148 (63%), Positives = 115/148 (77%), Gaps = 2/148 (1%)
 Frame = +3

Query: 3   LISSPSTKLARKQDTDKNNENPETREENDVMEPHCAAQDALLKVHNRIVEEDLRG--VQD 176
           +I S S K  RK D D+    P    + +  EPHCAAQDALLKVH+RIVEEDL G    D
Sbjct: 92  IIYSSSDKPPRKMDGDEGL--PAGNGQQEAFEPHCAAQDALLKVHDRIVEEDLFGGMASD 149

Query: 177 ENNNEIEIITRLLVPNTLVGCLLGRKGDVIQKLRSETGASIRVLSAEHLPACAMSTDELV 356
           ++N+   +  RLLVPN +VGC+LG++GDVIQ+LRSETGA+IRVL A+HLP+CAM TDELV
Sbjct: 150 DDNDNNVVTARLLVPNNMVGCVLGKRGDVIQRLRSETGANIRVLPADHLPSCAMDTDELV 209

Query: 357 QISGKPALVRKALYEVSTLLHQNPRKDK 440
           QISGKPA+ ++ALYE+S LLHQNPRKDK
Sbjct: 210 QISGKPAVAKRALYEISILLHQNPRKDK 237



 Score = 71.2 bits (173), Expect = 1e-10
 Identities = 41/113 (36%), Positives = 62/113 (54%)
 Frame = +3

Query: 99  PHCAAQDALLKVHNRIVEEDLRGVQDENNNEIEIITRLLVPNTLVGCLLGRKGDVIQKLR 278
           P     DA+L++ ++  +   +G+         IITRLLVP++ VGC+LG+ G VI ++R
Sbjct: 369 PRSQTIDAILQLQDKTSDFSEKGM---------IITRLLVPSSKVGCILGQGGQVINEMR 419

Query: 279 SETGASIRVLSAEHLPACAMSTDELVQISGKPALVRKALYEVSTLLHQNPRKD 437
               A IRV      P CA   +ELVQISG   + + AL E+++ L     +D
Sbjct: 420 RRLQADIRVYPKNDKPKCASDDEELVQISGNYGVAKDALAEIASRLRARTLRD 472


>ref|XP_006661902.1| PREDICTED: KH domain-containing protein At4g18375-like [Oryza
           brachyantha]
          Length = 773

 Score =  150 bits (379), Expect = 2e-34
 Identities = 76/122 (62%), Positives = 94/122 (77%), Gaps = 3/122 (2%)
 Frame = +3

Query: 93  MEPHCAAQDALLKVHNRIVE-EDLRGVQDENNNEIE--IITRLLVPNTLVGCLLGRKGDV 263
           M+PHC AQDALLK+H++I E EDL G  D   +E    +  R+LVP   VGCLLG+ G +
Sbjct: 119 MKPHCFAQDALLKIHDKIAEDEDLHGGIDHEKSETVDGVTARILVPGNQVGCLLGKGGSI 178

Query: 264 IQKLRSETGASIRVLSAEHLPACAMSTDELVQISGKPALVRKALYEVSTLLHQNPRKDKP 443
           IQ+LR+ETGA IRVL +E+LP CA+ +DELVQISG P+LVRKALYE+ST LHQ+PRKD P
Sbjct: 179 IQQLRNETGAGIRVLPSENLPQCALKSDELVQISGAPSLVRKALYEISTRLHQHPRKDNP 238

Query: 444 TL 449
            L
Sbjct: 239 PL 240



 Score = 69.7 bits (169), Expect = 4e-10
 Identities = 41/114 (35%), Positives = 63/114 (55%)
 Frame = +3

Query: 96  EPHCAAQDALLKVHNRIVEEDLRGVQDENNNEIEIITRLLVPNTLVGCLLGRKGDVIQKL 275
           +P     +AL+ +H+++          EN +   + TRL+VP+  VGC+LG  G VI ++
Sbjct: 355 DPVSPTIEALILLHSKV------SAPAENRH---LTTRLVVPSNKVGCILGEGGKVITEM 405

Query: 276 RSETGASIRVLSAEHLPACAMSTDELVQISGKPALVRKALYEVSTLLHQNPRKD 437
           R  TGA IRV S    P      +ELVQ++G PA+ R AL E+++ L     +D
Sbjct: 406 RRRTGAEIRVYSKADKPKYLSFDEELVQVAGLPAIARGALTEIASRLRTRTLRD 459


>gb|AAP54423.2| KH domain containing protein, expressed [Oryza sativa Japonica
           Group]
          Length = 677

 Score =  148 bits (374), Expect = 6e-34
 Identities = 77/138 (55%), Positives = 103/138 (74%), Gaps = 3/138 (2%)
 Frame = +3

Query: 45  TDKNNENPETREENDVMEPHCAAQDALLKVHNRIV-EEDLRG--VQDENNNEIEIITRLL 215
           T++  +N  T    D M+PHC AQDALLK+H++I  +EDL    V +++ N  ++I R+L
Sbjct: 102 TEEAAQNISTDGFED-MKPHCFAQDALLKIHDKIAADEDLHAGIVHEKSENVDDVIARIL 160

Query: 216 VPNTLVGCLLGRKGDVIQKLRSETGASIRVLSAEHLPACAMSTDELVQISGKPALVRKAL 395
           VP   VGCLLG+ G +IQ+LR++TGA IRVL +E+LP CA+ +DELVQISG  +LVRKAL
Sbjct: 161 VPGNQVGCLLGKGGSIIQQLRNDTGAGIRVLPSENLPQCALKSDELVQISGSSSLVRKAL 220

Query: 396 YEVSTLLHQNPRKDKPTL 449
           YE+ST LHQ+PRKD P L
Sbjct: 221 YEISTRLHQHPRKDNPPL 238



 Score = 68.9 bits (167), Expect = 6e-10
 Identities = 40/114 (35%), Positives = 64/114 (56%)
 Frame = +3

Query: 96  EPHCAAQDALLKVHNRIVEEDLRGVQDENNNEIEIITRLLVPNTLVGCLLGRKGDVIQKL 275
           +P     +AL+ +H+++          EN++   + TRL+VP+  VGC++G  G VI ++
Sbjct: 353 DPVSPTIEALILLHSKV------STLAENHH---LTTRLVVPSNKVGCIIGEGGKVITEM 403

Query: 276 RSETGASIRVLSAEHLPACAMSTDELVQISGKPALVRKALYEVSTLLHQNPRKD 437
           R  TGA IRV S    P      +ELVQ++G PA+ R AL E+++ L     +D
Sbjct: 404 RRRTGAEIRVYSKADKPKYLSFDEELVQVAGLPAIARGALTEIASRLRTRTLRD 457


>ref|NP_001064947.1| Os10g0495000 [Oryza sativa Japonica Group]
           gi|22128716|gb|AAM92828.1| putative RNA-binding protein
           [Oryza sativa Japonica Group]
           gi|110289325|gb|ABB47821.2| KH domain containing
           protein, expressed [Oryza sativa Japonica Group]
           gi|113639556|dbj|BAF26861.1| Os10g0495000 [Oryza sativa
           Japonica Group] gi|215694845|dbj|BAG90036.1| unnamed
           protein product [Oryza sativa Japonica Group]
          Length = 762

 Score =  148 bits (374), Expect = 6e-34
 Identities = 77/138 (55%), Positives = 103/138 (74%), Gaps = 3/138 (2%)
 Frame = +3

Query: 45  TDKNNENPETREENDVMEPHCAAQDALLKVHNRIV-EEDLRG--VQDENNNEIEIITRLL 215
           T++  +N  T    D M+PHC AQDALLK+H++I  +EDL    V +++ N  ++I R+L
Sbjct: 102 TEEAAQNISTDGFED-MKPHCFAQDALLKIHDKIAADEDLHAGIVHEKSENVDDVIARIL 160

Query: 216 VPNTLVGCLLGRKGDVIQKLRSETGASIRVLSAEHLPACAMSTDELVQISGKPALVRKAL 395
           VP   VGCLLG+ G +IQ+LR++TGA IRVL +E+LP CA+ +DELVQISG  +LVRKAL
Sbjct: 161 VPGNQVGCLLGKGGSIIQQLRNDTGAGIRVLPSENLPQCALKSDELVQISGSSSLVRKAL 220

Query: 396 YEVSTLLHQNPRKDKPTL 449
           YE+ST LHQ+PRKD P L
Sbjct: 221 YEISTRLHQHPRKDNPPL 238



 Score = 68.9 bits (167), Expect = 6e-10
 Identities = 40/114 (35%), Positives = 64/114 (56%)
 Frame = +3

Query: 96  EPHCAAQDALLKVHNRIVEEDLRGVQDENNNEIEIITRLLVPNTLVGCLLGRKGDVIQKL 275
           +P     +AL+ +H+++          EN++   + TRL+VP+  VGC++G  G VI ++
Sbjct: 353 DPVSPTIEALILLHSKV------STLAENHH---LTTRLVVPSNKVGCIIGEGGKVITEM 403

Query: 276 RSETGASIRVLSAEHLPACAMSTDELVQISGKPALVRKALYEVSTLLHQNPRKD 437
           R  TGA IRV S    P      +ELVQ++G PA+ R AL E+++ L     +D
Sbjct: 404 RRRTGAEIRVYSKADKPKYLSFDEELVQVAGLPAIARGALTEIASRLRTRTLRD 457