BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atropa21_contig00024056
         (1266 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006353749.1| PREDICTED: RNA pseudouridine synthase 3, mit...   720   0.0  
ref|XP_004243668.1| PREDICTED: RNA pseudourine synthase 3, mitoc...   706   0.0  
ref|XP_002267010.1| PREDICTED: RNA pseudourine synthase 3, mitoc...   595   e-167
gb|EOY26277.1| Pseudouridine synthase family protein [Theobroma ...   589   e-166
emb|CBI18448.3| unnamed protein product [Vitis vinifera]              585   e-164
ref|XP_002526838.1| ribosomal pseudouridine synthase, putative [...   579   e-163
ref|XP_006385075.1| hypothetical protein POPTR_0004s23670g [Popu...   576   e-162
ref|XP_006436406.1| hypothetical protein CICLE_v10031422mg [Citr...   574   e-161
ref|XP_006601250.1| PREDICTED: RNA pseudouridine synthase 3, mit...   573   e-161
ref|XP_006468112.1| PREDICTED: RNA pseudouridine synthase 3, mit...   573   e-161
ref|XP_006389943.1| hypothetical protein EUTSA_v10018480mg [Eutr...   571   e-160
gb|ESW32964.1| hypothetical protein PHAVU_001G032500g [Phaseolus...   570   e-160
ref|NP_178012.2| RNA pseudourine synthase 3 [Arabidopsis thalian...   569   e-159
ref|XP_002887761.1| hypothetical protein ARALYDRAFT_477057 [Arab...   567   e-159
ref|XP_006300371.1| hypothetical protein CARUB_v10022381mg [Caps...   565   e-158
gb|EMJ11188.1| hypothetical protein PRUPE_ppa005240mg [Prunus pe...   564   e-158
ref|XP_004515176.1| PREDICTED: RNA pseudourine synthase 3, mitoc...   563   e-158
gb|EXC58952.1| RNA pseudourine synthase 3 [Morus notabilis]           561   e-157
gb|EXC41018.1| RNA pseudourine synthase 3 [Morus notabilis]           558   e-156
gb|AAC83020.1| Contains similarity to gi|1786244 hypothetical 24...   555   e-155

>ref|XP_006353749.1| PREDICTED: RNA pseudouridine synthase 3, mitochondrial-like isoform
            X1 [Solanum tuberosum] gi|565374397|ref|XP_006353750.1|
            PREDICTED: RNA pseudouridine synthase 3,
            mitochondrial-like isoform X2 [Solanum tuberosum]
            gi|565374399|ref|XP_006353751.1| PREDICTED: RNA
            pseudouridine synthase 3, mitochondrial-like isoform X3
            [Solanum tuberosum]
          Length = 475

 Score =  720 bits (1858), Expect = 0.0
 Identities = 355/375 (94%), Positives = 365/375 (97%)
 Frame = +3

Query: 3    HFNKGLVQLDFNEPFTSKEGHTRLLRKIKHSDVMEVGARIYVPISVAETRISKRYDVIPS 182
            HFNKGLVQL+FNE FTSKEG TRLLRKIKHS+VMEVGARI+VPISVAETRISKRYDVIPS
Sbjct: 104  HFNKGLVQLEFNELFTSKEGQTRLLRKIKHSEVMEVGARIHVPISVAETRISKRYDVIPS 163

Query: 183  GTLYPNADEIAYLQRLVFYKDPAIIVLNKPPKLPVKGNLPVHNSMDALAATSLSYEYDEG 362
            GTLYPNADEIAYLQRLVFYKDPAI+VLNKPPKLP+KGNLPVHNSMDALAA +LSYEYDEG
Sbjct: 164  GTLYPNADEIAYLQRLVFYKDPAILVLNKPPKLPLKGNLPVHNSMDALAAAALSYEYDEG 223

Query: 363  PRLVHRLDRESSGLHLMGRTEESISHLHLLFSNTKKSKSLSKAWNDACGSTYQRYWALVI 542
            PRLVHRLDRESSGLHLMGRTEESISHLHLLFSNTKKSKSLSKAWNDACGSTYQRYWALVI
Sbjct: 224  PRLVHRLDRESSGLHLMGRTEESISHLHLLFSNTKKSKSLSKAWNDACGSTYQRYWALVI 283

Query: 543  GSPKEKEGMISAPLTKVLLDDGRTERVMLAQHSGLEASEEAVTEYRLLGPMINGCSWIEL 722
            GSPKEKEG+ISAPLTKVLLDDGRTERVMLAQ SGLEAS+EAVTEYRLLGPMINGCSWIEL
Sbjct: 284  GSPKEKEGVISAPLTKVLLDDGRTERVMLAQQSGLEASDEAVTEYRLLGPMINGCSWIEL 343

Query: 723  RPHTSRKHQLRVHCAEALGTPIVGDYKYGWFVHRKWKQMPRVDFEPTTGKPYRLKRPEGL 902
            RPHTSRKHQ+RVHCAEALGTPIVGDYKYGWFVHRKWKQMPRVD EPTTGKPYRLKRPEGL
Sbjct: 344  RPHTSRKHQIRVHCAEALGTPIVGDYKYGWFVHRKWKQMPRVDVEPTTGKPYRLKRPEGL 403

Query: 903  DVQKGSVLSKVPLLHLHCRELVLPNIAKFIELHSRKTKKHCLDADYSSKPDLLRFVAPMP 1082
            DVQKGSVLSKVPLLHLHCRELVLPNIAKFIELHSRKTKKH   +DYSSKPDLLRFVAPMP
Sbjct: 404  DVQKGSVLSKVPLLHLHCRELVLPNIAKFIELHSRKTKKH---SDYSSKPDLLRFVAPMP 460

Query: 1083 SHMKISWKLMSSYLI 1127
            S MKISWKLMSS LI
Sbjct: 461  SPMKISWKLMSSCLI 475


>ref|XP_004243668.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Solanum
            lycopersicum]
          Length = 475

 Score =  706 bits (1821), Expect = 0.0
 Identities = 350/375 (93%), Positives = 360/375 (96%)
 Frame = +3

Query: 3    HFNKGLVQLDFNEPFTSKEGHTRLLRKIKHSDVMEVGARIYVPISVAETRISKRYDVIPS 182
            HFNKGLVQL+ NE FTSKEG TRLLRKIKHS+VMEVGARI+VPISVAETRISKRYDVIPS
Sbjct: 104  HFNKGLVQLELNELFTSKEGQTRLLRKIKHSEVMEVGARIHVPISVAETRISKRYDVIPS 163

Query: 183  GTLYPNADEIAYLQRLVFYKDPAIIVLNKPPKLPVKGNLPVHNSMDALAATSLSYEYDEG 362
            GTLYPNADEIAYLQRLVFYKDPAI+VLNKPPKLPVKGNL VHNSMDALAA +LSYEYDEG
Sbjct: 164  GTLYPNADEIAYLQRLVFYKDPAILVLNKPPKLPVKGNLHVHNSMDALAAAALSYEYDEG 223

Query: 363  PRLVHRLDRESSGLHLMGRTEESISHLHLLFSNTKKSKSLSKAWNDACGSTYQRYWALVI 542
            PRLVHRLDRESSGLHLMGRTEESISHLHLLFSNTK+SKSLSKAWNDACGSTYQRYWALVI
Sbjct: 224  PRLVHRLDRESSGLHLMGRTEESISHLHLLFSNTKRSKSLSKAWNDACGSTYQRYWALVI 283

Query: 543  GSPKEKEGMISAPLTKVLLDDGRTERVMLAQHSGLEASEEAVTEYRLLGPMINGCSWIEL 722
            GSPK KEG+ISAPLTKVLLDDGRTERVMLAQ SGLEAS+EAVTEYRLLGPMINGCSWIEL
Sbjct: 284  GSPKVKEGVISAPLTKVLLDDGRTERVMLAQQSGLEASDEAVTEYRLLGPMINGCSWIEL 343

Query: 723  RPHTSRKHQLRVHCAEALGTPIVGDYKYGWFVHRKWKQMPRVDFEPTTGKPYRLKRPEGL 902
            RPHTSRKHQLRVHCAEALGTPIVGDYKYGWFVHRKWKQMPRVD EP TGKPYRLKRPEGL
Sbjct: 344  RPHTSRKHQLRVHCAEALGTPIVGDYKYGWFVHRKWKQMPRVDVEPITGKPYRLKRPEGL 403

Query: 903  DVQKGSVLSKVPLLHLHCRELVLPNIAKFIELHSRKTKKHCLDADYSSKPDLLRFVAPMP 1082
            DVQKGSVLSKVPLLHLHCRELVLPNIAKFIELHSRKT+K   + DYSSKPDLLRFVAPMP
Sbjct: 404  DVQKGSVLSKVPLLHLHCRELVLPNIAKFIELHSRKTRK---NTDYSSKPDLLRFVAPMP 460

Query: 1083 SHMKISWKLMSSYLI 1127
            S MKISWKLMSS LI
Sbjct: 461  SPMKISWKLMSSCLI 475


>ref|XP_002267010.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Vitis
            vinifera]
          Length = 479

 Score =  595 bits (1533), Expect = e-167
 Identities = 286/378 (75%), Positives = 330/378 (87%), Gaps = 3/378 (0%)
 Frame = +3

Query: 3    HFNKGLVQLD---FNEPFTSKEGHTRLLRKIKHSDVMEVGARIYVPISVAETRISKRYDV 173
            HFNKGLV ++    ++    KEG  + LRKIK ++VME G RIYVP+SVAE RISKR+D 
Sbjct: 102  HFNKGLVHMERSNLDDSSLEKEGQIKPLRKIKPNEVMEAGTRIYVPVSVAEARISKRFDT 161

Query: 174  IPSGTLYPNADEIAYLQRLVFYKDPAIIVLNKPPKLPVKGNLPVHNSMDALAATSLSYEY 353
            IPSGTL+PNADEI YLQRLV YKDPAI+VLNKPPK+P+KGNLPVHNSMDALAA +L+++Y
Sbjct: 162  IPSGTLHPNADEIEYLQRLVTYKDPAILVLNKPPKVPLKGNLPVHNSMDALAAAALTFDY 221

Query: 354  DEGPRLVHRLDRESSGLHLMGRTEESISHLHLLFSNTKKSKSLSKAWNDACGSTYQRYWA 533
            +EGP+LVHRLDRESSGL LMGRT+ES++HLH LFS+  K+KSLSKAW+DAC +T QRYWA
Sbjct: 222  EEGPKLVHRLDRESSGLLLMGRTKESVAHLHWLFSDINKAKSLSKAWDDACEATCQRYWA 281

Query: 534  LVIGSPKEKEGMISAPLTKVLLDDGRTERVMLAQHSGLEASEEAVTEYRLLGPMINGCSW 713
            LVIGSPK+KEG+I APL+KVLLDDG+TERV+LA  SGLEAS+EA+TEYR+LGPMINGCSW
Sbjct: 282  LVIGSPKQKEGVIHAPLSKVLLDDGKTERVILANQSGLEASQEAITEYRVLGPMINGCSW 341

Query: 714  IELRPHTSRKHQLRVHCAEALGTPIVGDYKYGWFVHRKWKQMPRVDFEPTTGKPYRLKRP 893
            IEL P TSRKHQLRVHCAEALGTPIVGDYKYGWFVHR+WKQMPRVD EPTTGKPY+++RP
Sbjct: 342  IELCPRTSRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDLEPTTGKPYKMRRP 401

Query: 894  EGLDVQKGSVLSKVPLLHLHCRELVLPNIAKFIELHSRKTKKHCLDADYSSKPDLLRFVA 1073
            EGLDVQKGSVLSKVPLLHLHCREL+LPNIAKF+ +   K K        S KPD+LRFVA
Sbjct: 402  EGLDVQKGSVLSKVPLLHLHCRELILPNIAKFLPILDPKPKNQNQYPKLSLKPDILRFVA 461

Query: 1074 PMPSHMKISWKLMSSYLI 1127
             MP+HMKISW LMSSYL+
Sbjct: 462  SMPNHMKISWNLMSSYLV 479


>gb|EOY26277.1| Pseudouridine synthase family protein [Theobroma cacao]
          Length = 471

 Score =  589 bits (1519), Expect = e-166
 Identities = 286/378 (75%), Positives = 331/378 (87%), Gaps = 3/378 (0%)
 Frame = +3

Query: 3    HFNKGLVQLDFN---EPFTSKEGHTRLLRKIKHSDVMEVGARIYVPISVAETRISKRYDV 173
            HFNKGLVQ++ +   +    ++G  + LRKIKH++VMEVG R++VP+S+AETRISKR+D 
Sbjct: 96   HFNKGLVQMESSNAGDTCIERDGLMKPLRKIKHNEVMEVGTRVWVPVSIAETRISKRFDC 155

Query: 174  IPSGTLYPNADEIAYLQRLVFYKDPAIIVLNKPPKLPVKGNLPVHNSMDALAATSLSYEY 353
            IPSGTLYPN DEI YLQRLV YKD AI+VLNKPPKLPVKG+LPVHNSMDALAA +LSY++
Sbjct: 156  IPSGTLYPNKDEIDYLQRLVKYKDYAILVLNKPPKLPVKGSLPVHNSMDALAAAALSYDH 215

Query: 354  DEGPRLVHRLDRESSGLHLMGRTEESISHLHLLFSNTKKSKSLSKAWNDACGSTYQRYWA 533
            DEGP+LVHRLDRESSGL LMGRT+ES++HLH LF++    KS  KAWNDAC   YQR+WA
Sbjct: 216  DEGPKLVHRLDRESSGLLLMGRTKESVAHLHWLFNDLNTVKSSCKAWNDACDVKYQRFWA 275

Query: 534  LVIGSPKEKEGMISAPLTKVLLDDGRTERVMLAQHSGLEASEEAVTEYRLLGPMINGCSW 713
            LVIG+PKEKEG+I APL+K+LLDDG+TERV+LAQ+ GLEAS+EA+TEYR+LGPMINGCSW
Sbjct: 276  LVIGTPKEKEGLICAPLSKILLDDGKTERVILAQNVGLEASQEAITEYRVLGPMINGCSW 335

Query: 714  IELRPHTSRKHQLRVHCAEALGTPIVGDYKYGWFVHRKWKQMPRVDFEPTTGKPYRLKRP 893
            IELRP TSRKHQLRVHCAEALGTPIVGDYKYGWFVHR+WKQMPRVD EPTTGKPY+L+RP
Sbjct: 336  IELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTTGKPYKLRRP 395

Query: 894  EGLDVQKGSVLSKVPLLHLHCRELVLPNIAKFIELHSRKTKKHCLDADYSSKPDLLRFVA 1073
            EGLDVQKGSVLSKVPLLHLHCRELVLPNIAKF+ + ++ T+   L    S KPDLLRFVA
Sbjct: 396  EGLDVQKGSVLSKVPLLHLHCRELVLPNIAKFLPVLNKNTE--TLPPALSMKPDLLRFVA 453

Query: 1074 PMPSHMKISWKLMSSYLI 1127
             MP HMKISW LMSSYL+
Sbjct: 454  TMPKHMKISWNLMSSYLV 471


>emb|CBI18448.3| unnamed protein product [Vitis vinifera]
          Length = 481

 Score =  585 bits (1508), Expect = e-164
 Identities = 283/380 (74%), Positives = 330/380 (86%), Gaps = 5/380 (1%)
 Frame = +3

Query: 3    HFNKGLVQLD---FNEPFTSKEGHTRLLRKIKHSDVMEVGARIYVPISVAETRISKRYDV 173
            HFNKGLV ++    ++    KEG  + LRKIK ++VME G RIYVP+SVAE RISKR+D 
Sbjct: 102  HFNKGLVHMERSNLDDSSLEKEGQIKPLRKIKPNEVMEAGTRIYVPVSVAEARISKRFDT 161

Query: 174  IPSGTLYPNADEIAYLQRL--VFYKDPAIIVLNKPPKLPVKGNLPVHNSMDALAATSLSY 347
            IPSGTL+PNADEI YLQRL  + ++DPAI+VLNKPPK+P+KGNLPVHNSMDALAA +L++
Sbjct: 162  IPSGTLHPNADEIEYLQRLWLLKFQDPAILVLNKPPKVPLKGNLPVHNSMDALAAAALTF 221

Query: 348  EYDEGPRLVHRLDRESSGLHLMGRTEESISHLHLLFSNTKKSKSLSKAWNDACGSTYQRY 527
            +Y+EGP+LVHRLDRESSGL LMGRT+ES++HLH LFS+  K+KSLSKAW+DAC +T QRY
Sbjct: 222  DYEEGPKLVHRLDRESSGLLLMGRTKESVAHLHWLFSDINKAKSLSKAWDDACEATCQRY 281

Query: 528  WALVIGSPKEKEGMISAPLTKVLLDDGRTERVMLAQHSGLEASEEAVTEYRLLGPMINGC 707
            WALVIGSPK+KEG+I APL+KVLLDDG+TERV+LA  SGLEAS+EA+TEYR+LGPMINGC
Sbjct: 282  WALVIGSPKQKEGVIHAPLSKVLLDDGKTERVILANQSGLEASQEAITEYRVLGPMINGC 341

Query: 708  SWIELRPHTSRKHQLRVHCAEALGTPIVGDYKYGWFVHRKWKQMPRVDFEPTTGKPYRLK 887
            SWIEL P TSRKHQLRVHCAEALGTPIVGDYKYGWFVHR+WKQMPRVD EPTTGKPY+++
Sbjct: 342  SWIELCPRTSRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDLEPTTGKPYKMR 401

Query: 888  RPEGLDVQKGSVLSKVPLLHLHCRELVLPNIAKFIELHSRKTKKHCLDADYSSKPDLLRF 1067
            RPEGLDVQKGSVLSKVPLLHLHCREL+LPNIAKF+ +   K K        S KPD+LRF
Sbjct: 402  RPEGLDVQKGSVLSKVPLLHLHCRELILPNIAKFLPILDPKPKNQNQYPKLSLKPDILRF 461

Query: 1068 VAPMPSHMKISWKLMSSYLI 1127
            VA MP+HMKISW LMSSYL+
Sbjct: 462  VASMPNHMKISWNLMSSYLV 481


>ref|XP_002526838.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
            gi|223533842|gb|EEF35573.1| ribosomal pseudouridine
            synthase, putative [Ricinus communis]
          Length = 468

 Score =  579 bits (1492), Expect = e-163
 Identities = 285/376 (75%), Positives = 323/376 (85%), Gaps = 1/376 (0%)
 Frame = +3

Query: 3    HFNKGLVQLDFNEPFTSKE-GHTRLLRKIKHSDVMEVGARIYVPISVAETRISKRYDVIP 179
            HFNKGL  ++      S E G    LRKIKH+D+ME GAR++V +SVAETRISKR+D IP
Sbjct: 95   HFNKGLAHIECPNGSGSIEYGGQMSLRKIKHNDIMEAGARVHVAVSVAETRISKRFDTIP 154

Query: 180  SGTLYPNADEIAYLQRLVFYKDPAIIVLNKPPKLPVKGNLPVHNSMDALAATSLSYEYDE 359
            SGTLYPNADEI YLQRLV YKD AIIVLNKPP+LPVKGNLP+HNSMDALAA +LSY+YDE
Sbjct: 155  SGTLYPNADEIQYLQRLVKYKDSAIIVLNKPPRLPVKGNLPLHNSMDALAAAALSYDYDE 214

Query: 360  GPRLVHRLDRESSGLHLMGRTEESISHLHLLFSNTKKSKSLSKAWNDACGSTYQRYWALV 539
            GP+LV RLDRESSGL LMGRT+ESI HL  LFS+  KS S  KAWNDAC +TYQRYWALV
Sbjct: 215  GPKLVQRLDRESSGLLLMGRTKESIDHLQWLFSDVNKSNSRCKAWNDACKATYQRYWALV 274

Query: 540  IGSPKEKEGMISAPLTKVLLDDGRTERVMLAQHSGLEASEEAVTEYRLLGPMINGCSWIE 719
            IGSPKEKEG+I APL+KVLL+DG+TERV+LAQHSGLEAS+EA+TEYR+LGP INGCSWIE
Sbjct: 275  IGSPKEKEGLIRAPLSKVLLNDGKTERVVLAQHSGLEASQEALTEYRVLGPRINGCSWIE 334

Query: 720  LRPHTSRKHQLRVHCAEALGTPIVGDYKYGWFVHRKWKQMPRVDFEPTTGKPYRLKRPEG 899
            LRP TSRKHQLRVHCAEALGTPIVGDYKYGW VH++WKQMPRVD EP +GKPY+L+RP G
Sbjct: 335  LRPLTSRKHQLRVHCAEALGTPIVGDYKYGWCVHQRWKQMPRVDIEPFSGKPYKLRRPAG 394

Query: 900  LDVQKGSVLSKVPLLHLHCRELVLPNIAKFIELHSRKTKKHCLDADYSSKPDLLRFVAPM 1079
            LDVQKGSVLSKVPLLHLHCRE VLPNIAKF+ + + K++   +     +KPDLLRFVA M
Sbjct: 395  LDVQKGSVLSKVPLLHLHCREFVLPNIAKFLAVLNEKSEN--IHPALDAKPDLLRFVASM 452

Query: 1080 PSHMKISWKLMSSYLI 1127
            P+HMKISW LMSSYL+
Sbjct: 453  PTHMKISWNLMSSYLV 468


>ref|XP_006385075.1| hypothetical protein POPTR_0004s23670g [Populus trichocarpa]
            gi|550341843|gb|ERP62872.1| hypothetical protein
            POPTR_0004s23670g [Populus trichocarpa]
          Length = 462

 Score =  576 bits (1485), Expect = e-162
 Identities = 282/377 (74%), Positives = 327/377 (86%), Gaps = 2/377 (0%)
 Frame = +3

Query: 3    HFNKGLVQLDFNEPFTS--KEGHTRLLRKIKHSDVMEVGARIYVPISVAETRISKRYDVI 176
            HFNK LVQ++      S   EG  + +RKIK SDVMEVGARI++P+SVAET ISKR+D I
Sbjct: 88   HFNKSLVQIECPSSSDSVEMEGLGKPMRKIKPSDVMEVGARIHIPVSVAETAISKRFDTI 147

Query: 177  PSGTLYPNADEIAYLQRLVFYKDPAIIVLNKPPKLPVKGNLPVHNSMDALAATSLSYEYD 356
            PSGTLYPNADEI YLQRLV YKD A++VLNKPPK+PVKGN+P+HNSMDALAA +LSY YD
Sbjct: 148  PSGTLYPNADEIEYLQRLVKYKDSALLVLNKPPKVPVKGNMPIHNSMDALAAAALSYGYD 207

Query: 357  EGPRLVHRLDRESSGLHLMGRTEESISHLHLLFSNTKKSKSLSKAWNDACGSTYQRYWAL 536
            EGP+LVHRLDRESSGL LMGRT+ESI+HL LLFS   K++S   AWNDAC +TYQRYWAL
Sbjct: 208  EGPKLVHRLDRESSGLLLMGRTKESIAHLQLLFSYINKAQSKCHAWNDACEATYQRYWAL 267

Query: 537  VIGSPKEKEGMISAPLTKVLLDDGRTERVMLAQHSGLEASEEAVTEYRLLGPMINGCSWI 716
            VIGSPK+KEG+ISA L+KVLLDDG+TERV+LAQHS LE S +AVTEYR+LGP INGCSWI
Sbjct: 268  VIGSPKDKEGLISARLSKVLLDDGKTERVVLAQHSSLEPSRDAVTEYRVLGPTINGCSWI 327

Query: 717  ELRPHTSRKHQLRVHCAEALGTPIVGDYKYGWFVHRKWKQMPRVDFEPTTGKPYRLKRPE 896
            ELRP TSRKHQLRVHCAEALGTPIVGDYKYGWFVHR+WKQMPRVD EP++GKPY+L+ PE
Sbjct: 328  ELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPSSGKPYKLRWPE 387

Query: 897  GLDVQKGSVLSKVPLLHLHCRELVLPNIAKFIELHSRKTKKHCLDADYSSKPDLLRFVAP 1076
            G+D+QKGSVL+KVPLLHLHCRELVLPNIAKF+++   K++   +    S++PDLLRFVA 
Sbjct: 388  GVDIQKGSVLAKVPLLHLHCRELVLPNIAKFLDVLDGKSEN--VHPALSTRPDLLRFVAS 445

Query: 1077 MPSHMKISWKLMSSYLI 1127
            MPSHMKISW LMSS+L+
Sbjct: 446  MPSHMKISWNLMSSFLV 462


>ref|XP_006436406.1| hypothetical protein CICLE_v10031422mg [Citrus clementina]
            gi|557538602|gb|ESR49646.1| hypothetical protein
            CICLE_v10031422mg [Citrus clementina]
          Length = 471

 Score =  574 bits (1479), Expect = e-161
 Identities = 286/380 (75%), Positives = 331/380 (87%), Gaps = 5/380 (1%)
 Frame = +3

Query: 3    HFNKGLVQLDFNEPFTS--KEGHTRLLRKIKHSDVMEVGARIYVPISVAETRISKRYDVI 176
            HFNKGLVQ++      S  ++G  + +RKIK ++VME GARI++P+S+ E RISKRYD I
Sbjct: 94   HFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTI 153

Query: 177  PSGTLYPNADEIAYLQRLVFYKDPAIIVLNKPPKLPVKGNLPVHNSMDALAATSLSYEYD 356
            PSGTL PNADEI YL+RLV Y+D AI+VLNKPPK+P+KG+LPVHNSMDALAA +LSY+Y+
Sbjct: 154  PSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYN 213

Query: 357  EGPRLVHRLDRESSGLHLMGRTEESISHLHLLFSNTKKSKSLSKAWNDACGSTYQRYWAL 536
            EGP+LVHRLDRESSGL LMGRT+ES+S L  LFS+  KSKSLSKAWNDAC + YQRYWAL
Sbjct: 214  EGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWAL 273

Query: 537  VIGSPKEKEGMISAPLTKVLLDDGRTERVMLAQHSGLEASEEAVTEYRLLGPMINGCSWI 716
            VIGSPKEK+G+I APL+KVLLDDG+TER++LAQ+SGLEAS+EAVTEYR+LGPMINGCSWI
Sbjct: 274  VIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAVTEYRVLGPMINGCSWI 333

Query: 717  ELRPHTSRKHQLRVHCAEALGTPIVGDYKYGWFVHRKWKQMPRVDFEPTTGKPYRLKRPE 896
            ELRP T RKHQLRVHCAEALGTPIVGDYKYGWFVHR+WKQMPRVD EPT+GKPY+L+RP+
Sbjct: 334  ELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPD 393

Query: 897  GLDVQKGSVLSKVPLLHLHCRELVLPNIAKFIELHSRKTKKHCLDADYSSK---PDLLRF 1067
            GLDVQKGSVLSKVPLLHLHCRELVLPNIAKF  + ++K+    L    SSK   PDLLRF
Sbjct: 394  GLDVQKGSVLSKVPLLHLHCRELVLPNIAKFRNVLNQKSDN--LFPTLSSKPDGPDLLRF 451

Query: 1068 VAPMPSHMKISWKLMSSYLI 1127
            VA MPSHMKISW LMSSYL+
Sbjct: 452  VASMPSHMKISWNLMSSYLV 471


>ref|XP_006601250.1| PREDICTED: RNA pseudouridine synthase 3, mitochondrial-like isoform
            X1 [Glycine max]
          Length = 476

 Score =  573 bits (1478), Expect = e-161
 Identities = 272/375 (72%), Positives = 323/375 (86%)
 Frame = +3

Query: 3    HFNKGLVQLDFNEPFTSKEGHTRLLRKIKHSDVMEVGARIYVPISVAETRISKRYDVIPS 182
            HF +GLVQ++ ++  T KE   + +RKI+ ++VM+ GAR++VP+S+ ETRISKRYD IPS
Sbjct: 104  HFREGLVQMEADDSSTQKEEQMKPMRKIRPNEVMKRGARVHVPVSICETRISKRYDAIPS 163

Query: 183  GTLYPNADEIAYLQRLVFYKDPAIIVLNKPPKLPVKGNLPVHNSMDALAATSLSYEYDEG 362
            GTLYPNADEI YLQRLV YKD AIIVLNKPPKLPVKG+LPVHNSMDALAA +LSY+YDEG
Sbjct: 164  GTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGSLPVHNSMDALAAAALSYDYDEG 223

Query: 363  PRLVHRLDRESSGLHLMGRTEESISHLHLLFSNTKKSKSLSKAWNDACGSTYQRYWALVI 542
            P+LVHRLDRESSG+ L+GRT++S+SHL  LFSN   +KS  K WN+AC +TYQRYWALVI
Sbjct: 224  PKLVHRLDRESSGILLLGRTKDSVSHLQWLFSNINNAKSSCKDWNEACEATYQRYWALVI 283

Query: 543  GSPKEKEGMISAPLTKVLLDDGRTERVMLAQHSGLEASEEAVTEYRLLGPMINGCSWIEL 722
            G+PKEKEG+I APL+KVLL+DG+TER++LA HS +E  +EAVTEYR+LGP INGCSW+EL
Sbjct: 284  GTPKEKEGIIHAPLSKVLLNDGKTERIILAHHSSVEPRQEAVTEYRVLGPQINGCSWVEL 343

Query: 723  RPHTSRKHQLRVHCAEALGTPIVGDYKYGWFVHRKWKQMPRVDFEPTTGKPYRLKRPEGL 902
            RP T RKHQLRVHCAEALGTPIVGDYKYGWFVH +WKQMPRVD EPTTGKPY+L+RPEGL
Sbjct: 344  RPLTYRKHQLRVHCAEALGTPIVGDYKYGWFVHSRWKQMPRVDIEPTTGKPYKLRRPEGL 403

Query: 903  DVQKGSVLSKVPLLHLHCRELVLPNIAKFIELHSRKTKKHCLDADYSSKPDLLRFVAPMP 1082
            DVQKGSVLSKVPLLHLHCRELVLPNI KF+ + +  +++  L      +PD+LRFVA MP
Sbjct: 404  DVQKGSVLSKVPLLHLHCRELVLPNIVKFMHVLNNSSEE--LRTSLREQPDVLRFVATMP 461

Query: 1083 SHMKISWKLMSSYLI 1127
            SHM+ISW LMSSYL+
Sbjct: 462  SHMRISWNLMSSYLV 476


>ref|XP_006468112.1| PREDICTED: RNA pseudouridine synthase 3, mitochondrial-like [Citrus
            sinensis]
          Length = 471

 Score =  573 bits (1476), Expect = e-161
 Identities = 285/380 (75%), Positives = 331/380 (87%), Gaps = 5/380 (1%)
 Frame = +3

Query: 3    HFNKGLVQLDFNEPFTS--KEGHTRLLRKIKHSDVMEVGARIYVPISVAETRISKRYDVI 176
            HFNKGLVQ++      S  ++G  + +RKIK ++VME GARI++P+S+ E RISKRYD I
Sbjct: 94   HFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTI 153

Query: 177  PSGTLYPNADEIAYLQRLVFYKDPAIIVLNKPPKLPVKGNLPVHNSMDALAATSLSYEYD 356
            PSGTL PNADEI YL+RLV Y+D AI+VLNKPPK+P+KGNLPVHNSMDALAA +LSY+ +
Sbjct: 154  PSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGNLPVHNSMDALAAAALSYDNN 213

Query: 357  EGPRLVHRLDRESSGLHLMGRTEESISHLHLLFSNTKKSKSLSKAWNDACGSTYQRYWAL 536
            EGP+LVHRLDRESSGL LMGRT+ES+S L  LFS+  KSKSLSKAWNDAC + YQRYWAL
Sbjct: 214  EGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWAL 273

Query: 537  VIGSPKEKEGMISAPLTKVLLDDGRTERVMLAQHSGLEASEEAVTEYRLLGPMINGCSWI 716
            VIGSP+EK+G+I APL+KVLLDDG+TER++LAQ+SGLEAS+EA+TEYR+LGPMINGCSWI
Sbjct: 274  VIGSPREKQGIIRAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWI 333

Query: 717  ELRPHTSRKHQLRVHCAEALGTPIVGDYKYGWFVHRKWKQMPRVDFEPTTGKPYRLKRPE 896
            ELRP T RKHQLRVHCAEALGTPIVGDYKYGWFVHR+WKQMPRVD EPT+GKPY+L+RP+
Sbjct: 334  ELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPD 393

Query: 897  GLDVQKGSVLSKVPLLHLHCRELVLPNIAKFIELHSRKTKKHCLDADYSSK---PDLLRF 1067
            GLDVQKGSVLSKVPLLHLHCRELVLPNIAKFI + ++K+    L    SSK   PDLLRF
Sbjct: 394  GLDVQKGSVLSKVPLLHLHCRELVLPNIAKFINVLNQKSDN--LFPTLSSKPDGPDLLRF 451

Query: 1068 VAPMPSHMKISWKLMSSYLI 1127
            VA MPSHMKISW LMSSYL+
Sbjct: 452  VASMPSHMKISWNLMSSYLV 471


>ref|XP_006389943.1| hypothetical protein EUTSA_v10018480mg [Eutrema salsugineum]
            gi|557086377|gb|ESQ27229.1| hypothetical protein
            EUTSA_v10018480mg [Eutrema salsugineum]
          Length = 478

 Score =  571 bits (1472), Expect = e-160
 Identities = 273/378 (72%), Positives = 328/378 (86%), Gaps = 3/378 (0%)
 Frame = +3

Query: 3    HFNKGLVQLDFN---EPFTSKEGHTRLLRKIKHSDVMEVGARIYVPISVAETRISKRYDV 173
            HF KGLVQ++F    +    K+   R ++K+KH++VM++G +I++P+S+AETRISKRYD 
Sbjct: 102  HFTKGLVQMEFRGRRDASREKQDGVRPIKKVKHNEVMQIGDKIWLPVSIAETRISKRYDT 161

Query: 174  IPSGTLYPNADEIAYLQRLVFYKDPAIIVLNKPPKLPVKGNLPVHNSMDALAATSLSYEY 353
            IPSGTLYPNADEIAYLQRLV +KD AIIVLNKPPKLPVKGN+P+HNSMDALAA +LS+  
Sbjct: 162  IPSGTLYPNADEIAYLQRLVRFKDSAIIVLNKPPKLPVKGNVPIHNSMDALAAAALSFGK 221

Query: 354  DEGPRLVHRLDRESSGLHLMGRTEESISHLHLLFSNTKKSKSLSKAWNDACGSTYQRYWA 533
            DEGPRL+HRLDRE+SGL +MGRT+ESI HLH +FS+ K   S  KAWN AC + YQ+YWA
Sbjct: 222  DEGPRLLHRLDRETSGLLVMGRTKESIDHLHSVFSDFKGRDSRCKAWNKACEAMYQQYWA 281

Query: 534  LVIGSPKEKEGMISAPLTKVLLDDGRTERVMLAQHSGLEASEEAVTEYRLLGPMINGCSW 713
            LVIGSPK+KEG+ISAP++KVLLDDG+T+RV+LA+ SG EAS+EA+TEYR+LGPMINGCSW
Sbjct: 282  LVIGSPKDKEGVISAPISKVLLDDGKTDRVVLARGSGFEASQEAITEYRVLGPMINGCSW 341

Query: 714  IELRPHTSRKHQLRVHCAEALGTPIVGDYKYGWFVHRKWKQMPRVDFEPTTGKPYRLKRP 893
            +ELRP TSRKHQLRVHCAEALGTPIVGDYKYGWFVH+KWKQMP+VD EPT+GKPY+L+RP
Sbjct: 342  LELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVHKKWKQMPQVDIEPTSGKPYKLRRP 401

Query: 894  EGLDVQKGSVLSKVPLLHLHCRELVLPNIAKFIELHSRKTKKHCLDADYSSKPDLLRFVA 1073
            EGLD+QKGSVLSKVPLLHLHCRE+VLPNIAKF+ + + + +   L     SKPDLLRFVA
Sbjct: 402  EGLDIQKGSVLSKVPLLHLHCREMVLPNIAKFLHVLNNQ-EIDSLHPGIISKPDLLRFVA 460

Query: 1074 PMPSHMKISWKLMSSYLI 1127
             MPSHMKISW +MSSYL+
Sbjct: 461  SMPSHMKISWNIMSSYLV 478


>gb|ESW32964.1| hypothetical protein PHAVU_001G032500g [Phaseolus vulgaris]
          Length = 480

 Score =  570 bits (1468), Expect = e-160
 Identities = 272/378 (71%), Positives = 322/378 (85%), Gaps = 3/378 (0%)
 Frame = +3

Query: 3    HFNKGLVQLDFN---EPFTSKEGHTRLLRKIKHSDVMEVGARIYVPISVAETRISKRYDV 173
            HF +GLVQ++     + +T KE   + +RKI+ ++VM+ GAR++VP+S+AETR+SKRYD 
Sbjct: 105  HFREGLVQMEDEVTADSYTQKENLMKPMRKIRPNEVMKHGARVHVPVSIAETRVSKRYDA 164

Query: 174  IPSGTLYPNADEIAYLQRLVFYKDPAIIVLNKPPKLPVKGNLPVHNSMDALAATSLSYEY 353
            IP GTLYPNADEI YLQRLV YKD AIIVLNKPPKLPVKGNLPVHNSMDALAA +LSY+Y
Sbjct: 165  IPCGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDALAAAALSYDY 224

Query: 354  DEGPRLVHRLDRESSGLHLMGRTEESISHLHLLFSNTKKSKSLSKAWNDACGSTYQRYWA 533
            DEGP+LVHRLDRE+SG+ L+GRT++S SHL  LF+N   +KS  KAWNDAC +TYQRYWA
Sbjct: 225  DEGPKLVHRLDRETSGILLLGRTKDSASHLQWLFTNINNAKSSCKAWNDACEATYQRYWA 284

Query: 534  LVIGSPKEKEGMISAPLTKVLLDDGRTERVMLAQHSGLEASEEAVTEYRLLGPMINGCSW 713
            LVIG+PKEKEG+I APL+KVLL+DG+TER++LA HS +E  +EAVTE+R+LGP INGCSW
Sbjct: 285  LVIGTPKEKEGIIHAPLSKVLLNDGKTERIILANHSSVEPRQEAVTEFRVLGPKINGCSW 344

Query: 714  IELRPHTSRKHQLRVHCAEALGTPIVGDYKYGWFVHRKWKQMPRVDFEPTTGKPYRLKRP 893
            +ELRP T RKHQLRVHCAEALGTPIVGDYKYGWFVH +WKQMPR+D EPTTGKPY+L+RP
Sbjct: 345  VELRPLTYRKHQLRVHCAEALGTPIVGDYKYGWFVHSRWKQMPRIDIEPTTGKPYKLRRP 404

Query: 894  EGLDVQKGSVLSKVPLLHLHCRELVLPNIAKFIELHSRKTKKHCLDADYSSKPDLLRFVA 1073
            EGLDVQKGSVLSKVPLLHLHCRELVLPNIAKF  LH        L +  + +P++LRFVA
Sbjct: 405  EGLDVQKGSVLSKVPLLHLHCRELVLPNIAKF--LHVLNNSSEELHSSLNQQPEVLRFVA 462

Query: 1074 PMPSHMKISWKLMSSYLI 1127
             MPSHM+ISW LMSSYL+
Sbjct: 463  TMPSHMRISWNLMSSYLV 480


>ref|NP_178012.2| RNA pseudourine synthase 3 [Arabidopsis thaliana]
            gi|75110951|sp|Q5XET6.1|PUS3_ARATH RecName: Full=RNA
            pseudouridine synthase 3, mitochondrial; AltName:
            Full=RNA pseudouridylate synthase 3; AltName:
            Full=RNA-uridine isomerase 3; Flags: Precursor
            gi|53850479|gb|AAU95416.1| At1g78910 [Arabidopsis
            thaliana] gi|56790228|gb|AAW30031.1| At1g78910
            [Arabidopsis thaliana] gi|332198052|gb|AEE36173.1| RNA
            pseudourine synthase 3 [Arabidopsis thaliana]
          Length = 478

 Score =  569 bits (1466), Expect = e-159
 Identities = 275/378 (72%), Positives = 325/378 (85%), Gaps = 3/378 (0%)
 Frame = +3

Query: 3    HFNKGLVQLDFN---EPFTSKEGHTRLLRKIKHSDVMEVGARIYVPISVAETRISKRYDV 173
            HF KGLVQ++F    +    KE     +RKIKH++VM++G +I++P+S+AE RISKRYD 
Sbjct: 102  HFTKGLVQMEFRGRRDASREKEDGAIPMRKIKHNEVMQIGDKIWLPVSIAEMRISKRYDT 161

Query: 174  IPSGTLYPNADEIAYLQRLVFYKDPAIIVLNKPPKLPVKGNLPVHNSMDALAATSLSYEY 353
            IPSGTLYPNADEIAYLQRLV +KD AIIVLNKPPKLPVKGN+P+HNSMDALAA +LS+  
Sbjct: 162  IPSGTLYPNADEIAYLQRLVRFKDSAIIVLNKPPKLPVKGNVPIHNSMDALAAAALSFGN 221

Query: 354  DEGPRLVHRLDRESSGLHLMGRTEESISHLHLLFSNTKKSKSLSKAWNDACGSTYQRYWA 533
            DEGPRLVHRLDRE+SGL +MGRT+ESI +LH +FS+ K   S  KAWN AC + YQ+YWA
Sbjct: 222  DEGPRLVHRLDRETSGLLVMGRTKESIDYLHSVFSDYKGRNSSCKAWNKACEAMYQQYWA 281

Query: 534  LVIGSPKEKEGMISAPLTKVLLDDGRTERVMLAQHSGLEASEEAVTEYRLLGPMINGCSW 713
            LVIGSPKEKEG+ISAPL+KVLLDDG+T+RV+LAQ SG EAS++A+TEY++LGP INGCSW
Sbjct: 282  LVIGSPKEKEGLISAPLSKVLLDDGKTDRVVLAQGSGFEASQDAITEYKVLGPKINGCSW 341

Query: 714  IELRPHTSRKHQLRVHCAEALGTPIVGDYKYGWFVHRKWKQMPRVDFEPTTGKPYRLKRP 893
            +ELRP TSRKHQLRVHCAEALGTPIVGDYKYGWFVH++WKQMP+VD EPTTGKPY+L+RP
Sbjct: 342  VELRPITSRKHQLRVHCAEALGTPIVGDYKYGWFVHKRWKQMPQVDIEPTTGKPYKLRRP 401

Query: 894  EGLDVQKGSVLSKVPLLHLHCRELVLPNIAKFIELHSRKTKKHCLDADYSSKPDLLRFVA 1073
            EGLDVQKGSVLSKVPLLHLHCRE+VLPNIAKF+ + +++ +   L      KPDLLRFVA
Sbjct: 402  EGLDVQKGSVLSKVPLLHLHCREMVLPNIAKFLHVMNQQ-ETEPLHTGIIDKPDLLRFVA 460

Query: 1074 PMPSHMKISWKLMSSYLI 1127
             MPSHMKISW LMSSYL+
Sbjct: 461  SMPSHMKISWNLMSSYLV 478


>ref|XP_002887761.1| hypothetical protein ARALYDRAFT_477057 [Arabidopsis lyrata subsp.
            lyrata] gi|297333602|gb|EFH64020.1| hypothetical protein
            ARALYDRAFT_477057 [Arabidopsis lyrata subsp. lyrata]
          Length = 477

 Score =  567 bits (1461), Expect = e-159
 Identities = 278/379 (73%), Positives = 325/379 (85%), Gaps = 4/379 (1%)
 Frame = +3

Query: 3    HFNKGLVQLDFN---EPFTSKEGHTRLLRKIKHSDVMEVGARIYVPISVAETRISKRYDV 173
            HF KGLVQ++F    +     E     +RKIKH++VME+G +I++P+S+AE RISKRYD 
Sbjct: 101  HFTKGLVQMEFRGRRDASRENEDGAIPMRKIKHNEVMEIGDKIWLPVSIAEMRISKRYDT 160

Query: 174  IPSGTLYPNADEIAYLQRLVFYKDPAIIVLNKPPKLPVKGNLPVHNSMDALAATSLSYEY 353
            IPSGTLYPNADEIAYLQRLV +KD AIIVLNKPPKLPVKGN+P+HNSMDALAA +LS+  
Sbjct: 161  IPSGTLYPNADEIAYLQRLVRFKDSAIIVLNKPPKLPVKGNVPIHNSMDALAAAALSFGK 220

Query: 354  DEGPRLVHRLDRESSGLHLMGRTEESISHLHLLFSNTKKSKSLSKAWNDACGSTYQRYWA 533
            DEGPRLVHRLDRE+SGL +MGR++ESI +LH +FS+ K   S  KAWN AC + YQ+YWA
Sbjct: 221  DEGPRLVHRLDRETSGLLVMGRSKESIHYLHSVFSDYKGRNSSCKAWNKACEAMYQQYWA 280

Query: 534  LVIGSPKEKEGMISAPLTKVLLDDGRTERVMLAQHSGLEASEEAVTEYRLLGPMINGCSW 713
            LVIGSPKEKEG+ISAPL+KVLLDDG+T+RV+LAQ SG EAS+EA+TEYR+LGPMINGCSW
Sbjct: 281  LVIGSPKEKEGLISAPLSKVLLDDGKTDRVVLAQGSGFEASQEAITEYRVLGPMINGCSW 340

Query: 714  IELRPHTSRKHQLRVHCAEALGTPIVGDYKYGWFVHRKWKQMPRVDFEPTTGKPYRLKRP 893
            +ELRP TSRKHQLRVHCAEALGT IVGDYKYGWFVH++WKQMP+VD EPTTGKPY+L+RP
Sbjct: 341  LELRPITSRKHQLRVHCAEALGTSIVGDYKYGWFVHKRWKQMPQVDIEPTTGKPYKLRRP 400

Query: 894  EGLDVQKGSVLSKVPLLHLHCRELVLPNIAKFIE-LHSRKTKKHCLDADYSSKPDLLRFV 1070
            EGLDVQKGSVLSKVPLLHLHCRE+VLPNIAKF+  L+ ++T+   L      KPDLLRFV
Sbjct: 401  EGLDVQKGSVLSKVPLLHLHCREMVLPNIAKFLHVLNQQETEP--LRTGIIDKPDLLRFV 458

Query: 1071 APMPSHMKISWKLMSSYLI 1127
            A MPSHMKISW LMSSYL+
Sbjct: 459  ASMPSHMKISWNLMSSYLV 477


>ref|XP_006300371.1| hypothetical protein CARUB_v10022381mg [Capsella rubella]
            gi|482569081|gb|EOA33269.1| hypothetical protein
            CARUB_v10022381mg [Capsella rubella]
          Length = 478

 Score =  565 bits (1455), Expect = e-158
 Identities = 273/378 (72%), Positives = 323/378 (85%), Gaps = 3/378 (0%)
 Frame = +3

Query: 3    HFNKGLVQLDFN---EPFTSKEGHTRLLRKIKHSDVMEVGARIYVPISVAETRISKRYDV 173
            HF KGLVQ++F    +     E   R +RKIKH +VM++G +I++P+S++E RISKRYD 
Sbjct: 102  HFTKGLVQMEFRGRRDASRENEDGARPMRKIKHDEVMQIGDKIWLPVSISEMRISKRYDT 161

Query: 174  IPSGTLYPNADEIAYLQRLVFYKDPAIIVLNKPPKLPVKGNLPVHNSMDALAATSLSYEY 353
            IPSGTLYPNADEIAYLQRLV +KD AIIVLNKPPKLPVKGN+P+HNSMDALAA +LS+  
Sbjct: 162  IPSGTLYPNADEIAYLQRLVRFKDSAIIVLNKPPKLPVKGNVPIHNSMDALAAAALSFGN 221

Query: 354  DEGPRLVHRLDRESSGLHLMGRTEESISHLHLLFSNTKKSKSLSKAWNDACGSTYQRYWA 533
            DEGPRLVHRLDRE+SGL +MGR +ESI +LH +FS+ K   S  KAWN +C + YQ+YWA
Sbjct: 222  DEGPRLVHRLDRETSGLLVMGRNKESIGYLHSVFSDYKGRNSSCKAWNKSCEAMYQQYWA 281

Query: 534  LVIGSPKEKEGMISAPLTKVLLDDGRTERVMLAQHSGLEASEEAVTEYRLLGPMINGCSW 713
            LVIGSPKEKEG+ISAPL+KVLLDDG+T+RV+LAQ S  EAS+EA+TEYR+LGPMINGCSW
Sbjct: 282  LVIGSPKEKEGLISAPLSKVLLDDGKTDRVVLAQGSCFEASQEAITEYRVLGPMINGCSW 341

Query: 714  IELRPHTSRKHQLRVHCAEALGTPIVGDYKYGWFVHRKWKQMPRVDFEPTTGKPYRLKRP 893
            +ELRP TSRKHQLRVHCAEALGTPIVGDYKYGWFVH++WKQMP+VD EPTTGKPY+L+RP
Sbjct: 342  LELRPITSRKHQLRVHCAEALGTPIVGDYKYGWFVHKRWKQMPQVDIEPTTGKPYKLRRP 401

Query: 894  EGLDVQKGSVLSKVPLLHLHCRELVLPNIAKFIELHSRKTKKHCLDADYSSKPDLLRFVA 1073
            EGLDVQKGSVLSKVPLLHLHCRE+VLPNIAKF+ + +++ +   +      KPDLLRFVA
Sbjct: 402  EGLDVQKGSVLSKVPLLHLHCREMVLPNIAKFLHVLNQQ-EAEPIRTGIIDKPDLLRFVA 460

Query: 1074 PMPSHMKISWKLMSSYLI 1127
             MPSHMKISW LMSSYL+
Sbjct: 461  SMPSHMKISWNLMSSYLV 478


>gb|EMJ11188.1| hypothetical protein PRUPE_ppa005240mg [Prunus persica]
          Length = 471

 Score =  564 bits (1454), Expect = e-158
 Identities = 276/375 (73%), Positives = 321/375 (85%)
 Frame = +3

Query: 3    HFNKGLVQLDFNEPFTSKEGHTRLLRKIKHSDVMEVGARIYVPISVAETRISKRYDVIPS 182
            HF +GLVQ++       KEG  + +RKI+ S+VMEVGAR+YVP+SV E+R+S+R+D IPS
Sbjct: 100  HFKQGLVQMEC-PGMIEKEGQMKPMRKIRPSEVMEVGARVYVPVSVVESRVSRRFDCIPS 158

Query: 183  GTLYPNADEIAYLQRLVFYKDPAIIVLNKPPKLPVKGNLPVHNSMDALAATSLSYEYDEG 362
            GTLYPNADEI Y+QR V YKD AIIVLNKPPKLPVKGNLPVHNSMDALAA +LSY  ++G
Sbjct: 159  GTLYPNADEIEYMQRRVKYKDSAIIVLNKPPKLPVKGNLPVHNSMDALAAAALSYGNNKG 218

Query: 363  PRLVHRLDRESSGLHLMGRTEESISHLHLLFSNTKKSKSLSKAWNDACGSTYQRYWALVI 542
            P+LVHRLDRESSGLHLMGRT+ES+S L  L+++  K KS  +AW+DAC + YQRYWALVI
Sbjct: 219  PKLVHRLDRESSGLHLMGRTKESVSLLQWLYTDFNKGKSSCQAWDDACEARYQRYWALVI 278

Query: 543  GSPKEKEGMISAPLTKVLLDDGRTERVMLAQHSGLEASEEAVTEYRLLGPMINGCSWIEL 722
            GSPKEKEG+I APL+KVLLD+G+TERV+LA  SGLEAS++A+T+YR+LGP INGCSWIEL
Sbjct: 279  GSPKEKEGLICAPLSKVLLDNGKTERVILAHQSGLEASQKAITQYRVLGPTINGCSWIEL 338

Query: 723  RPHTSRKHQLRVHCAEALGTPIVGDYKYGWFVHRKWKQMPRVDFEPTTGKPYRLKRPEGL 902
            RP TSRKHQLRVHCAEALGTPIVGDYKYGWFVHR+WKQMP VD EPT+G PY+L+RP GL
Sbjct: 339  RPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPHVDVEPTSGLPYKLRRPAGL 398

Query: 903  DVQKGSVLSKVPLLHLHCRELVLPNIAKFIELHSRKTKKHCLDADYSSKPDLLRFVAPMP 1082
            DVQKGSVLSKVPLLHLHCRELVLPNIAKF+ +  +K     L    SSKPD+LRFVA MP
Sbjct: 399  DVQKGSVLSKVPLLHLHCRELVLPNIAKFLLILDQKLDS--LHPAVSSKPDILRFVASMP 456

Query: 1083 SHMKISWKLMSSYLI 1127
            SHMKISW LMSSYL+
Sbjct: 457  SHMKISWNLMSSYLV 471


>ref|XP_004515176.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like isoform X1
            [Cicer arietinum]
          Length = 479

 Score =  563 bits (1451), Expect = e-158
 Identities = 271/378 (71%), Positives = 324/378 (85%), Gaps = 3/378 (0%)
 Frame = +3

Query: 3    HFNKGLVQLD---FNEPFTSKEGHTRLLRKIKHSDVMEVGARIYVPISVAETRISKRYDV 173
            HF +GLVQ++    ++ F  K+   + +RKI+ ++VM+ GAR++V +S+AET+ISKR+D 
Sbjct: 104  HFREGLVQMEDLIVDDSFKQKKELMKPMRKIRPNEVMKPGARVHVSVSMAETKISKRFDP 163

Query: 174  IPSGTLYPNADEIAYLQRLVFYKDPAIIVLNKPPKLPVKGNLPVHNSMDALAATSLSYEY 353
            IPSGTL PNADEI YLQRLV YKD AII+LNKPPKLPVKGNLPVHNSMDALAA +LSY+Y
Sbjct: 164  IPSGTLCPNADEIKYLQRLVIYKDSAIIMLNKPPKLPVKGNLPVHNSMDALAAAALSYDY 223

Query: 354  DEGPRLVHRLDRESSGLHLMGRTEESISHLHLLFSNTKKSKSLSKAWNDACGSTYQRYWA 533
            D+GP+LVHRLDRESSG+ L+GRT++S+SHL  LFSN   +KS  KAWNDAC STYQRYWA
Sbjct: 224  DDGPKLVHRLDRESSGILLLGRTKDSVSHLQWLFSNINNTKSSCKAWNDACESTYQRYWA 283

Query: 534  LVIGSPKEKEGMISAPLTKVLLDDGRTERVMLAQHSGLEASEEAVTEYRLLGPMINGCSW 713
            LVIG+PKEKEG+I APL+KVLL+DG+TERV+LA  S +E  +EAVTEYR+LGP INGCSW
Sbjct: 284  LVIGTPKEKEGIIHAPLSKVLLNDGKTERVILAHESSIEPHQEAVTEYRVLGPKINGCSW 343

Query: 714  IELRPHTSRKHQLRVHCAEALGTPIVGDYKYGWFVHRKWKQMPRVDFEPTTGKPYRLKRP 893
            +ELRP T RKHQLRVHCAEALGTPIVGDYKYGWFVH +WKQMPRVD EPTTGKPY+L+RP
Sbjct: 344  VELRPLTYRKHQLRVHCAEALGTPIVGDYKYGWFVHSRWKQMPRVDIEPTTGKPYKLRRP 403

Query: 894  EGLDVQKGSVLSKVPLLHLHCRELVLPNIAKFIELHSRKTKKHCLDADYSSKPDLLRFVA 1073
            EGLDVQKGSVLSKVPLLHLHCREL LPNIAKF+ +  + +++  LD   S +PD+LRFVA
Sbjct: 404  EGLDVQKGSVLSKVPLLHLHCRELALPNIAKFLNVLEKSSQQ--LDPSLSLQPDVLRFVA 461

Query: 1074 PMPSHMKISWKLMSSYLI 1127
             MP+HM+ISW LMSSYL+
Sbjct: 462  TMPNHMRISWNLMSSYLV 479


>gb|EXC58952.1| RNA pseudourine synthase 3 [Morus notabilis]
          Length = 449

 Score =  561 bits (1445), Expect = e-157
 Identities = 276/378 (73%), Positives = 322/378 (85%), Gaps = 3/378 (0%)
 Frame = +3

Query: 3    HFNKGLVQLD---FNEPFTSKEGHTRLLRKIKHSDVMEVGARIYVPISVAETRISKRYDV 173
            HFNK LVQ++   F +P   ++   + +RKIK ++VM  G RIYVP+SVAE+RISKR+DV
Sbjct: 85   HFNKSLVQMECSNFGDPLAERDRKMKPMRKIKPNEVMVEGTRIYVPVSVAESRISKRFDV 144

Query: 174  IPSGTLYPNADEIAYLQRLVFYKDPAIIVLNKPPKLPVKGNLPVHNSMDALAATSLSYEY 353
            IPSGTL+PNADEIAYLQRL    D AI+VLNKPP+LPVKG+LPVHNSMDALAA +LSY+Y
Sbjct: 145  IPSGTLHPNADEIAYLQRL----DSAILVLNKPPRLPVKGHLPVHNSMDALAAAALSYDY 200

Query: 354  DEGPRLVHRLDRESSGLHLMGRTEESISHLHLLFSNTKKSKSLSKAWNDACGSTYQRYWA 533
             EGP+LVHRLDR+SSGL LMGRT+ESISHL  LFSN K       AWNDAC + YQ+YWA
Sbjct: 201  SEGPKLVHRLDRDSSGLLLMGRTKESISHLEWLFSNIK-------AWNDACEAKYQKYWA 253

Query: 534  LVIGSPKEKEGMISAPLTKVLLDDGRTERVMLAQHSGLEASEEAVTEYRLLGPMINGCSW 713
            LVIGSPKEKEG+I APL+KVLL+DG+TERV+LA  +G +AS+EA+TEYR+LGPMINGCSW
Sbjct: 254  LVIGSPKEKEGIICAPLSKVLLNDGKTERVILAHQTGFQASQEAITEYRVLGPMINGCSW 313

Query: 714  IELRPHTSRKHQLRVHCAEALGTPIVGDYKYGWFVHRKWKQMPRVDFEPTTGKPYRLKRP 893
            +ELRP TSRKHQLRVHCAEALGTPIVGDYKYGWFVH++WKQMP+V+ EPTTGKPY+L+RP
Sbjct: 314  LELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVHKRWKQMPQVNIEPTTGKPYKLRRP 373

Query: 894  EGLDVQKGSVLSKVPLLHLHCRELVLPNIAKFIELHSRKTKKHCLDADYSSKPDLLRFVA 1073
            EGLDVQKGSV+SKVPLLHL CRELVLPNIAKF+ +  RK++    D    SKPDLLRFVA
Sbjct: 374  EGLDVQKGSVMSKVPLLHLQCRELVLPNIAKFLRVFDRKSQNQ--DPALESKPDLLRFVA 431

Query: 1074 PMPSHMKISWKLMSSYLI 1127
             MPSHMKISW LMSSYL+
Sbjct: 432  RMPSHMKISWNLMSSYLV 449


>gb|EXC41018.1| RNA pseudourine synthase 3 [Morus notabilis]
          Length = 449

 Score =  558 bits (1439), Expect = e-156
 Identities = 275/378 (72%), Positives = 321/378 (84%), Gaps = 3/378 (0%)
 Frame = +3

Query: 3    HFNKGLVQLD---FNEPFTSKEGHTRLLRKIKHSDVMEVGARIYVPISVAETRISKRYDV 173
            HFNK LVQ++   F +P   ++   + +RKIK ++VM  G RIYVP+SVAE+RISKR+DV
Sbjct: 85   HFNKSLVQMECSNFGDPLAERDRKMKPMRKIKPNEVMVEGTRIYVPVSVAESRISKRFDV 144

Query: 174  IPSGTLYPNADEIAYLQRLVFYKDPAIIVLNKPPKLPVKGNLPVHNSMDALAATSLSYEY 353
            IPSGTL+PNADEIAYLQRL    D AI+VLNKPP+LPVKG+LPVHNSMDALAA +LSY+Y
Sbjct: 145  IPSGTLHPNADEIAYLQRL----DSAILVLNKPPRLPVKGHLPVHNSMDALAAAALSYDY 200

Query: 354  DEGPRLVHRLDRESSGLHLMGRTEESISHLHLLFSNTKKSKSLSKAWNDACGSTYQRYWA 533
             EGP+LVHRLDR+SSGL LMGRT+ESISHL  LFSN K       AWNDAC + YQ+YWA
Sbjct: 201  SEGPKLVHRLDRDSSGLLLMGRTKESISHLEWLFSNIK-------AWNDACEAKYQKYWA 253

Query: 534  LVIGSPKEKEGMISAPLTKVLLDDGRTERVMLAQHSGLEASEEAVTEYRLLGPMINGCSW 713
            LVIGSPKEKEG+I APL+KVLL+DG+TERV+LA  +G +AS+EA+TEYR+LGPMINGCSW
Sbjct: 254  LVIGSPKEKEGIICAPLSKVLLNDGKTERVILAHQTGFQASQEAITEYRVLGPMINGCSW 313

Query: 714  IELRPHTSRKHQLRVHCAEALGTPIVGDYKYGWFVHRKWKQMPRVDFEPTTGKPYRLKRP 893
            +ELRP TSRKHQLRVHCAEALGTPIVGDYKYGW VH++WKQMP+V+ EPTTGKPY+L+RP
Sbjct: 314  LELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWLVHKRWKQMPQVNIEPTTGKPYKLRRP 373

Query: 894  EGLDVQKGSVLSKVPLLHLHCRELVLPNIAKFIELHSRKTKKHCLDADYSSKPDLLRFVA 1073
            EGLDVQKGSV+SKVPLLHL CRELVLPNIAKF+ +  RK++    D    SKPDLLRFVA
Sbjct: 374  EGLDVQKGSVMSKVPLLHLQCRELVLPNIAKFLRVFDRKSENQ--DPALESKPDLLRFVA 431

Query: 1074 PMPSHMKISWKLMSSYLI 1127
             MPSHMKISW LMSSYL+
Sbjct: 432  RMPSHMKISWNLMSSYLV 449


>gb|AAC83020.1| Contains similarity to gi|1786244 hypothetical 24.9 kD protein in
            surA-hepA intergenic region yab0 from Escherichia coli
            genome gb|AE000116, and to hypothetical YABO family
            PF|00849 [Arabidopsis thaliana]
          Length = 491

 Score =  555 bits (1431), Expect = e-155
 Identities = 275/391 (70%), Positives = 325/391 (83%), Gaps = 16/391 (4%)
 Frame = +3

Query: 3    HFNKGLVQLDFN---EPFTSKEGHTRLLRKIKHSDVMEVGARIYVPISVAETRISKRYDV 173
            HF KGLVQ++F    +    KE     +RKIKH++VM++G +I++P+S+AE RISKRYD 
Sbjct: 102  HFTKGLVQMEFRGRRDASREKEDGAIPMRKIKHNEVMQIGDKIWLPVSIAEMRISKRYDT 161

Query: 174  IPSGTLYPNADEIAYLQRLVFYKDPAIIVLNKPPKLPVKGNLPVHNSMDALAATSLSYEY 353
            IPSGTLYPNADEIAYLQRLV +KD AIIVLNKPPKLPVKGN+P+HNSMDALAA +LS+  
Sbjct: 162  IPSGTLYPNADEIAYLQRLVRFKDSAIIVLNKPPKLPVKGNVPIHNSMDALAAAALSFGN 221

Query: 354  DEGPRLV-------HRLDRESSGLHLMGRTEESISHLHLLFSNTKKSKSLSKAWNDACGS 512
            DEGPRLV       HRLDRE+SGL +MGRT+ESI +LH +FS+ K   S  KAWN AC +
Sbjct: 222  DEGPRLVKLTFLGVHRLDRETSGLLVMGRTKESIDYLHSVFSDYKGRNSSCKAWNKACEA 281

Query: 513  TYQRYWALVIGSPKEKEGMISAPLTKVLLDDGRTERVMLAQHSGLEASEEAVTEYRLLGP 692
             YQ+YWALVIGSPKEKEG+ISAPL+KVLLDDG+T+RV+LAQ SG EAS++A+TEY++LGP
Sbjct: 282  MYQQYWALVIGSPKEKEGLISAPLSKVLLDDGKTDRVVLAQGSGFEASQDAITEYKVLGP 341

Query: 693  MINGCSWIELRPHTSRKH------QLRVHCAEALGTPIVGDYKYGWFVHRKWKQMPRVDF 854
             INGCSW+ELRP TSRKH      QLRVHCAEALGTPIVGDYKYGWFVH++WKQMP+VD 
Sbjct: 342  KINGCSWVELRPITSRKHQPPSKKQLRVHCAEALGTPIVGDYKYGWFVHKRWKQMPQVDI 401

Query: 855  EPTTGKPYRLKRPEGLDVQKGSVLSKVPLLHLHCRELVLPNIAKFIELHSRKTKKHCLDA 1034
            EPTTGKPY+L+RPEGLDVQKGSVLSKVPLLHLHCRE+VLPNIAKF+ + +++ +   L  
Sbjct: 402  EPTTGKPYKLRRPEGLDVQKGSVLSKVPLLHLHCREMVLPNIAKFLHVMNQQ-ETEPLHT 460

Query: 1035 DYSSKPDLLRFVAPMPSHMKISWKLMSSYLI 1127
                KPDLLRFVA MPSHMKISW LMSSYL+
Sbjct: 461  GIIDKPDLLRFVASMPSHMKISWNLMSSYLV 491