BLASTX nr result
ID: Atropa21_contig00023012
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Atropa21_contig00023012
(457 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006345710.1| PREDICTED: putative ribonuclease H protein A... 92 4e-20
ref|XP_006345709.1| PREDICTED: putative ribonuclease H protein A... 90 1e-19
ref|XP_006353602.1| PREDICTED: putative ribonuclease H protein A... 90 2e-19
ref|XP_006362709.1| PREDICTED: putative ribonuclease H protein A... 66 6e-09
ref|XP_006352585.1| PREDICTED: uncharacterized protein LOC102588... 58 2e-08
ref|XP_006355601.1| PREDICTED: putative ribonuclease H protein A... 60 2e-07
ref|XP_006352964.1| PREDICTED: putative ribonuclease H protein A... 60 2e-07
ref|XP_006347119.1| PREDICTED: putative ribonuclease H protein A... 60 4e-07
ref|XP_006337991.1| PREDICTED: putative ribonuclease H protein A... 60 4e-07
ref|XP_006354966.1| PREDICTED: putative ribonuclease H protein A... 56 6e-06
>ref|XP_006345710.1| PREDICTED: putative ribonuclease H protein At1g65750-like isoform
X2 [Solanum tuberosum]
Length = 284
Score = 92.0 bits (227), Expect(2) = 4e-20
Identities = 37/49 (75%), Positives = 44/49 (89%)
Frame = +3
Query: 198 REGSKS*KRWWRIIPSCIWWTVWRERDGRCSEDRSNSIQKVKWNCIVSL 344
R G+KS KRWWR+IPSCIWW+VW+ER+ RC ++RSNSI KVKWNCIVSL
Sbjct: 214 RGGTKSQKRWWRLIPSCIWWSVWKERNSRCFDNRSNSIHKVKWNCIVSL 262
Score = 31.6 bits (70), Expect(2) = 4e-20
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +1
Query: 331 VLYLYFRCKQQCIEDTDQLVD 393
++ L F CKQ CI DTDQ+VD
Sbjct: 259 IVSLLFWCKQLCIVDTDQIVD 279
>ref|XP_006345709.1| PREDICTED: putative ribonuclease H protein At1g65750-like isoform
X1 [Solanum tuberosum]
Length = 284
Score = 89.7 bits (221), Expect(2) = 1e-19
Identities = 36/49 (73%), Positives = 43/49 (87%)
Frame = +3
Query: 198 REGSKS*KRWWRIIPSCIWWTVWRERDGRCSEDRSNSIQKVKWNCIVSL 344
R +KS KRWWR+IPSCIWW+VW+ER+ RC ++RSNSI KVKWNCIVSL
Sbjct: 214 RGSTKSQKRWWRLIPSCIWWSVWKERNSRCFDNRSNSIHKVKWNCIVSL 262
Score = 32.0 bits (71), Expect(2) = 1e-19
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +1
Query: 331 VLYLYFRCKQQCIEDTDQLVD 393
++ L F CKQ CI DTDQ+VD
Sbjct: 259 IVSLLFLCKQLCIVDTDQIVD 279
>ref|XP_006353602.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
tuberosum]
Length = 517
Score = 89.7 bits (221), Expect(2) = 2e-19
Identities = 36/49 (73%), Positives = 43/49 (87%)
Frame = +3
Query: 198 REGSKS*KRWWRIIPSCIWWTVWRERDGRCSEDRSNSIQKVKWNCIVSL 344
R +KS KRWWR+IPSCIWW+VW+ER+ RC ++RSNSI KVKWNCIVSL
Sbjct: 447 RGSTKSQKRWWRLIPSCIWWSVWKERNNRCFDNRSNSIHKVKWNCIVSL 495
Score = 31.6 bits (70), Expect(2) = 2e-19
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +1
Query: 331 VLYLYFRCKQQCIEDTDQLVD 393
++ L F CKQ CI DTDQ+VD
Sbjct: 492 IVSLLFWCKQLCIVDTDQIVD 512
>ref|XP_006362709.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
tuberosum]
Length = 217
Score = 65.9 bits (159), Expect = 6e-09
Identities = 27/48 (56%), Positives = 39/48 (81%), Gaps = 2/48 (4%)
Frame = +3
Query: 198 REGS--KS*KRWWRIIPSCIWWTVWRERDGRCSEDRSNSIQKVKWNCI 335
R+G+ K+ KRW RI+P+CIWWT+W+ER+ RC E + N+IQK+K NC+
Sbjct: 146 RDGNAGKNEKRW-RIVPACIWWTIWKERNQRCFEGKQNNIQKIKTNCL 192
>ref|XP_006352585.1| PREDICTED: uncharacterized protein LOC102588593 [Solanum tuberosum]
Length = 255
Score = 58.2 bits (139), Expect(2) = 2e-08
Identities = 21/46 (45%), Positives = 33/46 (71%)
Frame = +3
Query: 210 KS*KRWWRIIPSCIWWTVWRERDGRCSEDRSNSIQKVKWNCIVSLF 347
+S + WW+ IP+CIWWT+W+ER+ R + + NS QK+K N + L+
Sbjct: 189 RSKEDWWKCIPACIWWTLWKERNERSHDGKLNSTQKIKMNSLSLLY 234
Score = 25.8 bits (55), Expect(2) = 2e-08
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +1
Query: 340 LYFRCKQQCIEDTDQLVD 393
LYF CKQ + + D LVD
Sbjct: 233 LYFWCKQDLVGEVDSLVD 250
>ref|XP_006355601.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
tuberosum]
Length = 399
Score = 60.5 bits (145), Expect = 2e-07
Identities = 24/39 (61%), Positives = 29/39 (74%)
Frame = +3
Query: 228 WRIIPSCIWWTVWRERDGRCSEDRSNSIQKVKWNCIVSL 344
WRIIP+ IWW W+ER+ RC E NS+QKVK NCI+ L
Sbjct: 339 WRIIPASIWWATWKERNSRCFESVENSMQKVKLNCILLL 377
>ref|XP_006352964.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
tuberosum]
Length = 323
Score = 60.5 bits (145), Expect = 2e-07
Identities = 24/39 (61%), Positives = 29/39 (74%)
Frame = +3
Query: 228 WRIIPSCIWWTVWRERDGRCSEDRSNSIQKVKWNCIVSL 344
WRIIP+ IWW W+ER+ RC E NS+QKVK NCI+ L
Sbjct: 263 WRIIPASIWWATWKERNSRCFESVENSMQKVKLNCILLL 301
>ref|XP_006347119.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
tuberosum]
Length = 450
Score = 59.7 bits (143), Expect = 4e-07
Identities = 23/39 (58%), Positives = 29/39 (74%)
Frame = +3
Query: 228 WRIIPSCIWWTVWRERDGRCSEDRSNSIQKVKWNCIVSL 344
WRIIP+ IWW +W+ER+ RC E NS+Q VK NCI+ L
Sbjct: 390 WRIIPASIWWAIWKERNSRCFEGIENSVQDVKLNCILLL 428
>ref|XP_006337991.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
tuberosum]
Length = 556
Score = 59.7 bits (143), Expect = 4e-07
Identities = 23/39 (58%), Positives = 29/39 (74%)
Frame = +3
Query: 228 WRIIPSCIWWTVWRERDGRCSEDRSNSIQKVKWNCIVSL 344
WRIIP+ IWW +W+ER+ RC E NS+Q VK NCI+ L
Sbjct: 496 WRIIPASIWWAIWKERNSRCFEGIENSVQDVKLNCILLL 534
>ref|XP_006354966.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
tuberosum]
Length = 397
Score = 55.8 bits (133), Expect = 6e-06
Identities = 22/48 (45%), Positives = 36/48 (75%), Gaps = 1/48 (2%)
Frame = +3
Query: 201 EGSKS*-KRWWRIIPSCIWWTVWRERDGRCSEDRSNSIQKVKWNCIVS 341
EGS S K W+I+P+ IWWT+W+ER+ R +++S+ + K+K NCI++
Sbjct: 327 EGSGSTDKSRWKIVPAVIWWTIWKERNSRNFDNKSSPLHKIKMNCIIT 374