BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atropa21_contig00022648
         (535 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006355885.1| PREDICTED: pre-mRNA-processing factor 39-lik...   212   5e-53
ref|XP_004247135.1| PREDICTED: pre-mRNA-processing factor 39-lik...   206   3e-51
emb|CBI37185.3| unnamed protein product [Vitis vinifera]              146   2e-33
ref|XP_002272685.1| PREDICTED: pre-mRNA-processing factor 39-lik...   146   2e-33
ref|XP_002526546.1| Pre-mRNA-processing protein prp39, putative ...   132   4e-29
gb|EOX94328.1| Tetratricopeptide repeat (TPR)-like superfamily p...   131   8e-29
gb|EOX94326.1| Tetratricopeptide repeat (TPR)-like superfamily p...   131   8e-29
ref|XP_004292243.1| PREDICTED: pre-mRNA-processing factor 39-lik...   130   2e-28
gb|EMJ00906.1| hypothetical protein PRUPE_ppa001458mg [Prunus pe...   130   2e-28
ref|XP_006443741.1| hypothetical protein CICLE_v10018866mg [Citr...   129   3e-28
ref|XP_006443740.1| hypothetical protein CICLE_v10018866mg [Citr...   129   3e-28
ref|XP_002303113.1| hydroxyproline-rich glycoprotein [Populus tr...   127   1e-27
gb|EXB46008.1| Pre-mRNA-processing factor 39 [Morus notabilis]        124   2e-26
ref|XP_002320608.2| hypothetical protein POPTR_0014s18740g [Popu...   119   3e-25
ref|XP_004493823.1| PREDICTED: pre-mRNA-processing factor 39-lik...   119   3e-25
ref|XP_006604511.1| PREDICTED: pre-mRNA-processing factor 39-lik...   118   9e-25
ref|XP_003553509.1| PREDICTED: pre-mRNA-processing factor 39-lik...   118   9e-25
gb|AAC16751.1| Contains similarity to pre-mRNA processing protei...   117   2e-24
ref|NP_001184905.1| pre-mRNA-processing factor 39  [Arabidopsis ...   117   2e-24
ref|NP_001154302.1| pre-mRNA-processing factor 39  [Arabidopsis ...   117   2e-24

>ref|XP_006355885.1| PREDICTED: pre-mRNA-processing factor 39-like isoform X1 [Solanum
            tuberosum] gi|565378907|ref|XP_006355886.1| PREDICTED:
            pre-mRNA-processing factor 39-like isoform X2 [Solanum
            tuberosum]
          Length = 821

 Score =  212 bits (539), Expect = 5e-53
 Identities = 104/132 (78%), Positives = 107/132 (81%)
 Frame = +3

Query: 3    DLFGDAPSIKKADDRHVKLFLRHKTSSDSKKRQAEDYIVSEKTKLAKSAVAATNPSVASA 182
            DLFGDA SIKKADDRH KLFLRH+TSSDSKKRQAEDYIVSEKTKLAKSAVA TNPSV  A
Sbjct: 647  DLFGDAVSIKKADDRHAKLFLRHRTSSDSKKRQAEDYIVSEKTKLAKSAVATTNPSVVGA 706

Query: 183  YPGAENQWPAGYGVQGQTWPQATQAQSQQWNPXXXXXXXXXXXXXXXXXXXPPQTPAASV 362
            YPGA+NQWPAGYGVQGQTWPQATQAQ+QQWNP                   PPQ PAASV
Sbjct: 707  YPGAQNQWPAGYGVQGQTWPQATQAQTQQWNPGYAQQAAYGAYGSYGTGYAPPQAPAASV 766

Query: 363  PSSAGYGAYPST 398
            PSSAGYGAYPST
Sbjct: 767  PSSAGYGAYPST 778


>ref|XP_004247135.1| PREDICTED: pre-mRNA-processing factor 39-like [Solanum lycopersicum]
          Length = 825

 Score =  206 bits (524), Expect = 3e-51
 Identities = 101/132 (76%), Positives = 103/132 (78%)
 Frame = +3

Query: 3    DLFGDAPSIKKADDRHVKLFLRHKTSSDSKKRQAEDYIVSEKTKLAKSAVAATNPSVASA 182
            DLFGDA SIKKADDRH KLFLRH+TSSDSKKR AEDYIVSEKTKLAKSAVAATNPS   A
Sbjct: 649  DLFGDAVSIKKADDRHAKLFLRHRTSSDSKKRHAEDYIVSEKTKLAKSAVAATNPSAVGA 708

Query: 183  YPGAENQWPAGYGVQGQTWPQATQAQSQQWNPXXXXXXXXXXXXXXXXXXXPPQTPAASV 362
            YPGA+NQWPAGYG QGQTWPQA QAQSQQWNP                   PPQ PAASV
Sbjct: 709  YPGAQNQWPAGYGAQGQTWPQAAQAQSQQWNPGYAQQAAYGAYGSYGTGYAPPQAPAASV 768

Query: 363  PSSAGYGAYPST 398
            PSS GYGAYPST
Sbjct: 769  PSSGGYGAYPST 780


>emb|CBI37185.3| unnamed protein product [Vitis vinifera]
          Length = 432

 Score =  146 bits (369), Expect = 2e-33
 Identities = 74/134 (55%), Positives = 87/134 (64%), Gaps = 2/134 (1%)
 Frame = +3

Query: 3   DLFGDAPSIKKADDRHVKLFLRHKTSSDSKKRQAEDYIVSEKTKLAKSAVAATNP--SVA 176
           DLFGDA SIKKADDRH KLFL H+++S+ KKR AED++ S+K KLAKS     +P  S+ 
Sbjct: 260 DLFGDAQSIKKADDRHAKLFLHHRSTSELKKRHAEDFLASDKAKLAKSYSGVPSPAQSLM 319

Query: 177 SAYPGAENQWPAGYGVQGQTWPQATQAQSQQWNPXXXXXXXXXXXXXXXXXXXPPQTPAA 356
            AYP A+NQW +GYG+Q Q WPQATQAQ QQWNP                    PQ P  
Sbjct: 320 GAYPSAQNQWASGYGLQPQAWPQATQAQGQQWNPGYTQQAAYNAYSGYGSSYTHPQIP-T 378

Query: 357 SVPSSAGYGAYPST 398
           SVP +A YGAYP T
Sbjct: 379 SVPQTAAYGAYPPT 392


>ref|XP_002272685.1| PREDICTED: pre-mRNA-processing factor 39-like [Vitis vinifera]
          Length = 832

 Score =  146 bits (369), Expect = 2e-33
 Identities = 74/134 (55%), Positives = 87/134 (64%), Gaps = 2/134 (1%)
 Frame = +3

Query: 3    DLFGDAPSIKKADDRHVKLFLRHKTSSDSKKRQAEDYIVSEKTKLAKSAVAATNP--SVA 176
            DLFGDA SIKKADDRH KLFL H+++S+ KKR AED++ S+K KLAKS     +P  S+ 
Sbjct: 660  DLFGDAQSIKKADDRHAKLFLHHRSTSELKKRHAEDFLASDKAKLAKSYSGVPSPAQSLM 719

Query: 177  SAYPGAENQWPAGYGVQGQTWPQATQAQSQQWNPXXXXXXXXXXXXXXXXXXXPPQTPAA 356
             AYP A+NQW +GYG+Q Q WPQATQAQ QQWNP                    PQ P  
Sbjct: 720  GAYPSAQNQWASGYGLQPQAWPQATQAQGQQWNPGYTQQAAYNAYSGYGSSYTHPQIP-T 778

Query: 357  SVPSSAGYGAYPST 398
            SVP +A YGAYP T
Sbjct: 779  SVPQTAAYGAYPPT 792


>ref|XP_002526546.1| Pre-mRNA-processing protein prp39, putative [Ricinus communis]
            gi|223534107|gb|EEF35824.1| Pre-mRNA-processing protein
            prp39, putative [Ricinus communis]
          Length = 829

 Score =  132 bits (333), Expect = 4e-29
 Identities = 68/133 (51%), Positives = 82/133 (61%), Gaps = 2/133 (1%)
 Frame = +3

Query: 6    LFGDAPSIKKADDRHVKLFLRHKTSSDSKKRQAEDYIVSEKTKLAKSAVAATNP--SVAS 179
            +FGDA SIKKADDRH KLFL H++ S+ KKR A+DY+ S+K+K+AK+   A +P  S+  
Sbjct: 659  MFGDAQSIKKADDRHAKLFLPHRSKSEFKKRHADDYLTSDKSKIAKAYGDAPSPVQSLMG 718

Query: 180  AYPGAENQWPAGYGVQGQTWPQATQAQSQQWNPXXXXXXXXXXXXXXXXXXXPPQTPAAS 359
            AYP  +NQW AGYGVQ Q WP ATQAQ QQW P                    PQ P  S
Sbjct: 719  AYPSTQNQWAAGYGVQPQAWPPATQAQMQQWTPGYGQQAAYSTYGSYASSYTTPQAP-TS 777

Query: 360  VPSSAGYGAYPST 398
               +A YGAYP T
Sbjct: 778  AAQTATYGAYPPT 790


>gb|EOX94328.1| Tetratricopeptide repeat (TPR)-like superfamily protein isoform 3
           [Theobroma cacao]
          Length = 538

 Score =  131 bits (330), Expect = 8e-29
 Identities = 70/135 (51%), Positives = 83/135 (61%), Gaps = 4/135 (2%)
 Frame = +3

Query: 6   LFGDAPSIKKADDRHVKLFLRHKTSSDSKKRQAEDYIVSEKTKLAKSAVAATNP--SVAS 179
           LFGD  SIK+A+DRH KLFL H+  S+ +KR AED++ S+KTKLAKS   A +P  S+  
Sbjct: 366 LFGDVQSIKRAEDRHAKLFLPHRPMSELRKRHAEDFLSSDKTKLAKSYSGAPSPGQSLMG 425

Query: 180 AYPGAENQWPAGYGVQGQTWPQAT--QAQSQQWNPXXXXXXXXXXXXXXXXXXXPPQTPA 353
           AYP A+NQWPAGY  Q QTWP  T  QAQ+Q W P                     Q P 
Sbjct: 426 AYPNAQNQWPAGYAAQPQTWPPTTQAQAQAQPWTPGYSQQAAYGAYSSYGSNYATQQVP- 484

Query: 354 ASVPSSAGYGAYPST 398
            SVP SAGYGAYP+T
Sbjct: 485 TSVPQSAGYGAYPTT 499


>gb|EOX94326.1| Tetratricopeptide repeat (TPR)-like superfamily protein, putative
            isoform 1 [Theobroma cacao] gi|508702431|gb|EOX94327.1|
            Tetratricopeptide repeat (TPR)-like superfamily protein,
            putative isoform 1 [Theobroma cacao]
          Length = 815

 Score =  131 bits (330), Expect = 8e-29
 Identities = 70/135 (51%), Positives = 83/135 (61%), Gaps = 4/135 (2%)
 Frame = +3

Query: 6    LFGDAPSIKKADDRHVKLFLRHKTSSDSKKRQAEDYIVSEKTKLAKSAVAATNP--SVAS 179
            LFGD  SIK+A+DRH KLFL H+  S+ +KR AED++ S+KTKLAKS   A +P  S+  
Sbjct: 643  LFGDVQSIKRAEDRHAKLFLPHRPMSELRKRHAEDFLSSDKTKLAKSYSGAPSPGQSLMG 702

Query: 180  AYPGAENQWPAGYGVQGQTWPQAT--QAQSQQWNPXXXXXXXXXXXXXXXXXXXPPQTPA 353
            AYP A+NQWPAGY  Q QTWP  T  QAQ+Q W P                     Q P 
Sbjct: 703  AYPNAQNQWPAGYAAQPQTWPPTTQAQAQAQPWTPGYSQQAAYGAYSSYGSNYATQQVP- 761

Query: 354  ASVPSSAGYGAYPST 398
             SVP SAGYGAYP+T
Sbjct: 762  TSVPQSAGYGAYPTT 776


>ref|XP_004292243.1| PREDICTED: pre-mRNA-processing factor 39-like [Fragaria vesca subsp.
            vesca]
          Length = 805

 Score =  130 bits (326), Expect = 2e-28
 Identities = 70/134 (52%), Positives = 82/134 (61%), Gaps = 3/134 (2%)
 Frame = +3

Query: 3    DLFGDAPSIKKADDRHVKLFLRHKTS-SDSKKRQAEDYIVSEKTKLAKSAVAATNP--SV 173
            +LFGDA SIKKA+DRH KLFL H++S S+ KKRQAEDY+ S+K K+AKS     +P  S+
Sbjct: 632  NLFGDAQSIKKAEDRHAKLFLLHRSSTSELKKRQAEDYLSSDKGKMAKSYSGVPSPAQSI 691

Query: 174  ASAYPGAENQWPAGYGVQGQTWPQATQAQSQQWNPXXXXXXXXXXXXXXXXXXXPPQTPA 353
              AYP A+NQW AGYGVQ Q WPQATQAQ QQW P                    PQT A
Sbjct: 692  MGAYPNAQNQWAAGYGVQPQAWPQATQAQGQQWTPGYTQQAYNAYGGYQQVPAAVPQTAA 751

Query: 354  ASVPSSAGYGAYPS 395
                  A Y A P+
Sbjct: 752  YPATYPAAYPAQPA 765


>gb|EMJ00906.1| hypothetical protein PRUPE_ppa001458mg [Prunus persica]
          Length = 823

 Score =  130 bits (326), Expect = 2e-28
 Identities = 70/135 (51%), Positives = 84/135 (62%), Gaps = 3/135 (2%)
 Frame = +3

Query: 3    DLFGDAPSIKKADDRHVKLFLRHKTSSDSKKRQAEDYIVSEKTKLAKSAVAATNP--SVA 176
            +LFGDA SIKKA+DRH KLFL H++S   KKRQAED++ S+K K+AKS     +P  S+ 
Sbjct: 649  NLFGDARSIKKAEDRHAKLFLPHRSSLSEKKRQAEDFLSSDKVKMAKSYSGVPSPAQSIM 708

Query: 177  SAYPGAENQWPAGYGVQGQTWPQATQ-AQSQQWNPXXXXXXXXXXXXXXXXXXXPPQTPA 353
             AYP A++QWPAGYGVQ Q WP ATQ  Q QQW P                    PQ P 
Sbjct: 709  GAYPSAQSQWPAGYGVQPQAWPPATQPTQGQQWTPGYTQQPYNAYGGYGSGYAN-PQMP- 766

Query: 354  ASVPSSAGYGAYPST 398
             + P +A YGAYPST
Sbjct: 767  TTTPQTAAYGAYPST 781


>ref|XP_006443741.1| hypothetical protein CICLE_v10018866mg [Citrus clementina]
            gi|568851530|ref|XP_006479443.1| PREDICTED:
            pre-mRNA-processing factor 39-like isoform X1 [Citrus
            sinensis] gi|557546003|gb|ESR56981.1| hypothetical
            protein CICLE_v10018866mg [Citrus clementina]
          Length = 829

 Score =  129 bits (325), Expect = 3e-28
 Identities = 66/131 (50%), Positives = 83/131 (63%), Gaps = 2/131 (1%)
 Frame = +3

Query: 6    LFGDAPSIKKADDRHVKLFLRHKTSSDSKKRQAEDYIVSEKTKLAKSAVAATNP--SVAS 179
            LFGDA  IKKA+DRH +LFL H+++S+ +KR AED++ SE+ K+AKS   A +P  S+  
Sbjct: 665  LFGDAQLIKKAEDRHARLFLPHRSTSELRKRHAEDFLASERAKMAKSYSGAPSPAQSLMG 724

Query: 180  AYPGAENQWPAGYGVQGQTWPQATQAQSQQWNPXXXXXXXXXXXXXXXXXXXPPQTPAAS 359
            AYP ++N W AGYGVQ QTWP ATQAQ+QQWN                       TP  S
Sbjct: 725  AYPSSQNPWAAGYGVQPQTWPPATQAQAQQWNQQAAYGAYSAYGSSY-------PTPQTS 777

Query: 360  VPSSAGYGAYP 392
            VP +A YGAYP
Sbjct: 778  VPQNAAYGAYP 788


>ref|XP_006443740.1| hypothetical protein CICLE_v10018866mg [Citrus clementina]
            gi|567902508|ref|XP_006443742.1| hypothetical protein
            CICLE_v10018866mg [Citrus clementina]
            gi|568851532|ref|XP_006479444.1| PREDICTED:
            pre-mRNA-processing factor 39-like isoform X2 [Citrus
            sinensis] gi|557546002|gb|ESR56980.1| hypothetical
            protein CICLE_v10018866mg [Citrus clementina]
            gi|557546004|gb|ESR56982.1| hypothetical protein
            CICLE_v10018866mg [Citrus clementina]
          Length = 828

 Score =  129 bits (325), Expect = 3e-28
 Identities = 66/131 (50%), Positives = 83/131 (63%), Gaps = 2/131 (1%)
 Frame = +3

Query: 6    LFGDAPSIKKADDRHVKLFLRHKTSSDSKKRQAEDYIVSEKTKLAKSAVAATNP--SVAS 179
            LFGDA  IKKA+DRH +LFL H+++S+ +KR AED++ SE+ K+AKS   A +P  S+  
Sbjct: 665  LFGDAQLIKKAEDRHARLFLPHRSTSELRKRHAEDFLASERAKMAKSYSGAPSPAQSLMG 724

Query: 180  AYPGAENQWPAGYGVQGQTWPQATQAQSQQWNPXXXXXXXXXXXXXXXXXXXPPQTPAAS 359
            AYP ++N W AGYGVQ QTWP ATQAQ+QQWN                       TP  S
Sbjct: 725  AYPSSQNPWAAGYGVQPQTWPPATQAQAQQWNQQAAYGAYSAYGSSY-------PTPQTS 777

Query: 360  VPSSAGYGAYP 392
            VP +A YGAYP
Sbjct: 778  VPQNAAYGAYP 788


>ref|XP_002303113.1| hydroxyproline-rich glycoprotein [Populus trichocarpa]
            gi|222844839|gb|EEE82386.1| hydroxyproline-rich
            glycoprotein [Populus trichocarpa]
          Length = 878

 Score =  127 bits (320), Expect = 1e-27
 Identities = 67/133 (50%), Positives = 78/133 (58%), Gaps = 2/133 (1%)
 Frame = +3

Query: 6    LFGDAPSIKKADDRHVKLFLRHKTSSDSKKRQAEDYIVSEKTKLAKSAVAATNP--SVAS 179
            +FGDA SIKKA DRH K FL H++ S+ KKR AEDY+ S+K K+AK    AT+P  S+  
Sbjct: 708  IFGDAQSIKKAADRHAKFFLPHRSKSELKKRHAEDYLASDKAKMAKPYPDATSPAQSLMG 767

Query: 180  AYPGAENQWPAGYGVQGQTWPQATQAQSQQWNPXXXXXXXXXXXXXXXXXXXPPQTPAAS 359
            AY  A+NQW AGYGVQ Q WP ATQ Q+QQW P                    PQ P  S
Sbjct: 768  AYASAQNQWTAGYGVQPQAWPPATQVQTQQWAPGYNQQAAYGAYSGYGGSYPNPQAP-TS 826

Query: 360  VPSSAGYGAYPST 398
            V   A YG YP T
Sbjct: 827  VAQGAAYGGYPPT 839


>gb|EXB46008.1| Pre-mRNA-processing factor 39 [Morus notabilis]
          Length = 934

 Score =  124 bits (310), Expect = 2e-26
 Identities = 68/138 (49%), Positives = 80/138 (57%), Gaps = 6/138 (4%)
 Frame = +3

Query: 3    DLFGDAPSIKKADDRHVKLFLRHKTSSDSKKRQAEDYIVSEKTKLAKSAVAATNP--SVA 176
            +LFGDA SIKKA+DRH KLFL H+++S+ KKR AED++ S+KTKLAKS     +P  S+ 
Sbjct: 760  NLFGDAQSIKKAEDRHAKLFLPHRSTSELKKRHAEDFLASDKTKLAKSYSGVPSPVQSLM 819

Query: 177  SAYPGAENQWPAGYGVQGQTWPQATQAQSQQWNPXXXXXXXXXXXXXXXXXXXPPQTPAA 356
              YP  +NQW AGYG Q Q WP A QAQ QQW P                     Q P A
Sbjct: 820  GTYPNTQNQWAAGYGAQPQAWPPAMQAQGQQWAPGYTQQAAYGAYGGYGSNYTNLQVP-A 878

Query: 357  SVPSSAGY----GAYPST 398
            S P SA Y     AYP T
Sbjct: 879  SAPQSAAYAAAAAAYPPT 896


>ref|XP_002320608.2| hypothetical protein POPTR_0014s18740g [Populus trichocarpa]
            gi|550324509|gb|EEE98923.2| hypothetical protein
            POPTR_0014s18740g [Populus trichocarpa]
          Length = 830

 Score =  119 bits (299), Expect = 3e-25
 Identities = 64/133 (48%), Positives = 77/133 (57%), Gaps = 2/133 (1%)
 Frame = +3

Query: 6    LFGDAPSIKKADDRHVKLFLRHKTSSDSKKRQAEDYIVSEKTKLAKSAVAATNP--SVAS 179
            +FGDA SIKKA DRH K FL H + S+ KKR AEDY+ S++ K+AK    AT+P  S+  
Sbjct: 666  IFGDAQSIKKAADRHAKFFLPHSSKSELKKRHAEDYLSSDREKIAKPYSDATSPAQSLMG 725

Query: 180  AYPGAENQWPAGYGVQGQTWPQATQAQSQQWNPXXXXXXXXXXXXXXXXXXXPPQTPAAS 359
            AY  A+NQW AGYG+Q Q WP ATQ Q+QQW P                    PQ P + 
Sbjct: 726  AYASAQNQWTAGYGLQPQAWPPATQVQAQQWTP----GYNQAAYGGYGGSYTSPQVPTSG 781

Query: 360  VPSSAGYGAYPST 398
                A YGAYP T
Sbjct: 782  A-QGAAYGAYPPT 793


>ref|XP_004493823.1| PREDICTED: pre-mRNA-processing factor 39-like [Cicer arietinum]
          Length = 822

 Score =  119 bits (299), Expect = 3e-25
 Identities = 63/132 (47%), Positives = 80/132 (60%), Gaps = 2/132 (1%)
 Frame = +3

Query: 3    DLFGDAPSIKKADDRHVKLFLRHKTSSDSKKRQAEDYIVSEKTKLAKSAVAATNP--SVA 176
            +LFGD  SIK+ +DRH KLFL H++ S+ KKR AED++ S+KTK+ + A +A +P  S+ 
Sbjct: 656  NLFGDVQSIKRGEDRHAKLFLPHRSMSELKKRHAEDFLASDKTKVPR-AYSAQSPAQSLM 714

Query: 177  SAYPGAENQWPAGYGVQGQTWPQATQAQSQQWNPXXXXXXXXXXXXXXXXXXXPPQTPAA 356
             AYP A NQW   YG Q QTWP ATQAQ+QQW                      PQ P +
Sbjct: 715  GAYPNAPNQW-TNYGAQPQTWPAATQAQAQQWPAGYTQQASYGAYAGYGGNYANPQVPTS 773

Query: 357  SVPSSAGYGAYP 392
              PS+A YGAYP
Sbjct: 774  VPPSTAAYGAYP 785


>ref|XP_006604511.1| PREDICTED: pre-mRNA-processing factor 39-like isoform X2 [Glycine
            max]
          Length = 829

 Score =  118 bits (295), Expect = 9e-25
 Identities = 65/132 (49%), Positives = 79/132 (59%), Gaps = 2/132 (1%)
 Frame = +3

Query: 3    DLFGDAPSIKKADDRHVKLFLRHKTSSDSKKRQAEDYIVSEKTKLAKSAVAATNP--SVA 176
            +LFGD  SIK+A+DRH KLFL H++ S+ KKR AED++VS+KTK+ +S  +A +P  S  
Sbjct: 662  NLFGDVQSIKRAEDRHAKLFLPHRSMSELKKRHAEDFLVSDKTKVPRS-YSAQSPAQSAM 720

Query: 177  SAYPGAENQWPAGYGVQGQTWPQATQAQSQQWNPXXXXXXXXXXXXXXXXXXXPPQTPAA 356
             AYP A+NQW   YGVQ QTWP  TQAQ QQW                       Q P  
Sbjct: 721  GAYPNAQNQW-TNYGVQPQTWPPVTQAQGQQWTAGYTQQASYGAYAGYGSNYVNSQLP-T 778

Query: 357  SVPSSAGYGAYP 392
            SVP S  YGAYP
Sbjct: 779  SVPQSTAYGAYP 790


>ref|XP_003553509.1| PREDICTED: pre-mRNA-processing factor 39-like isoform X1 [Glycine
            max]
          Length = 828

 Score =  118 bits (295), Expect = 9e-25
 Identities = 65/132 (49%), Positives = 79/132 (59%), Gaps = 2/132 (1%)
 Frame = +3

Query: 3    DLFGDAPSIKKADDRHVKLFLRHKTSSDSKKRQAEDYIVSEKTKLAKSAVAATNP--SVA 176
            +LFGD  SIK+A+DRH KLFL H++ S+ KKR AED++VS+KTK+ +S  +A +P  S  
Sbjct: 661  NLFGDVQSIKRAEDRHAKLFLPHRSMSELKKRHAEDFLVSDKTKVPRS-YSAQSPAQSAM 719

Query: 177  SAYPGAENQWPAGYGVQGQTWPQATQAQSQQWNPXXXXXXXXXXXXXXXXXXXPPQTPAA 356
             AYP A+NQW   YGVQ QTWP  TQAQ QQW                       Q P  
Sbjct: 720  GAYPNAQNQW-TNYGVQPQTWPPVTQAQGQQWTAGYTQQASYGAYAGYGSNYVNSQLP-T 777

Query: 357  SVPSSAGYGAYP 392
            SVP S  YGAYP
Sbjct: 778  SVPQSTAYGAYP 789


>gb|AAC16751.1| Contains similarity to pre-mRNA processing protein PRP39 gb|L29224
           from S. cerevisiae. ESTs gb|R64908 and gb|T88158,
           gb|N38703 and gb|AA651043 come from this gene
           [Arabidopsis thaliana]
          Length = 1345

 Score =  117 bits (293), Expect = 2e-24
 Identities = 62/134 (46%), Positives = 82/134 (61%), Gaps = 4/134 (2%)
 Frame = +3

Query: 6   LFGDAPSIKKADDRHVKLFLRHKTSSDSKKRQAEDYIVSEKTKLAKSAVAATNPS--VAS 179
           +FGD  SIKKA+D+HVKLF  H+++S+ KKR A+D++ S++TK+AK+    T P+  V++
Sbjct: 598 IFGDVKSIKKAEDQHVKLFYPHRSTSELKKRSADDFLASDRTKMAKT-YNGTPPAQPVSN 656

Query: 180 AYPGAENQWPAGYGVQGQTWP--QATQAQSQQWNPXXXXXXXXXXXXXXXXXXXPPQTPA 353
           AYP A+ QW  GY  Q QTWP  QA  AQ QQWNP                    PQ P 
Sbjct: 657 AYPNAQAQWSGGYAAQPQTWPPAQAAPAQPQQWNPAYGQQAAYGAYGGYPAGYTAPQAP- 715

Query: 354 ASVPSSAGYGAYPS 395
             VP +A YGAYP+
Sbjct: 716 TPVPQAAAYGAYPA 729


>ref|NP_001184905.1| pre-mRNA-processing factor 39  [Arabidopsis thaliana]
            gi|332189533|gb|AEE27654.1| pre-mRNA-processing factor 39
            [Arabidopsis thaliana]
          Length = 823

 Score =  117 bits (293), Expect = 2e-24
 Identities = 62/134 (46%), Positives = 82/134 (61%), Gaps = 4/134 (2%)
 Frame = +3

Query: 6    LFGDAPSIKKADDRHVKLFLRHKTSSDSKKRQAEDYIVSEKTKLAKSAVAATNPS--VAS 179
            +FGD  SIKKA+D+HVKLF  H+++S+ KKR A+D++ S++TK+AK+    T P+  V++
Sbjct: 653  IFGDVKSIKKAEDQHVKLFYPHRSTSELKKRSADDFLASDRTKMAKT-YNGTPPAQPVSN 711

Query: 180  AYPGAENQWPAGYGVQGQTWP--QATQAQSQQWNPXXXXXXXXXXXXXXXXXXXPPQTPA 353
            AYP A+ QW  GY  Q QTWP  QA  AQ QQWNP                    PQ P 
Sbjct: 712  AYPNAQAQWSGGYAAQPQTWPPAQAAPAQPQQWNPAYGQQAAYGAYGGYPAGYTAPQAP- 770

Query: 354  ASVPSSAGYGAYPS 395
              VP +A YGAYP+
Sbjct: 771  TPVPQAAAYGAYPA 784


>ref|NP_001154302.1| pre-mRNA-processing factor 39  [Arabidopsis thaliana]
           gi|332189532|gb|AEE27653.1| pre-mRNA-processing factor
           39 [Arabidopsis thaliana]
          Length = 582

 Score =  117 bits (293), Expect = 2e-24
 Identities = 62/134 (46%), Positives = 82/134 (61%), Gaps = 4/134 (2%)
 Frame = +3

Query: 6   LFGDAPSIKKADDRHVKLFLRHKTSSDSKKRQAEDYIVSEKTKLAKSAVAATNPS--VAS 179
           +FGD  SIKKA+D+HVKLF  H+++S+ KKR A+D++ S++TK+AK+    T P+  V++
Sbjct: 412 IFGDVKSIKKAEDQHVKLFYPHRSTSELKKRSADDFLASDRTKMAKT-YNGTPPAQPVSN 470

Query: 180 AYPGAENQWPAGYGVQGQTWP--QATQAQSQQWNPXXXXXXXXXXXXXXXXXXXPPQTPA 353
           AYP A+ QW  GY  Q QTWP  QA  AQ QQWNP                    PQ P 
Sbjct: 471 AYPNAQAQWSGGYAAQPQTWPPAQAAPAQPQQWNPAYGQQAAYGAYGGYPAGYTAPQAP- 529

Query: 354 ASVPSSAGYGAYPS 395
             VP +A YGAYP+
Sbjct: 530 TPVPQAAAYGAYPA 543