BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atropa21_contig00021038
         (859 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006359637.1| PREDICTED: pentatricopeptide repeat-containi...   290   5e-76
ref|XP_006359636.1| PREDICTED: pentatricopeptide repeat-containi...   263   5e-68
ref|XP_004231448.1| PREDICTED: pentatricopeptide repeat-containi...   244   4e-62

>ref|XP_006359637.1| PREDICTED: pentatricopeptide repeat-containing protein MRL1,
            chloroplastic-like isoform X2 [Solanum tuberosum]
          Length = 1109

 Score =  290 bits (742), Expect = 5e-76
 Identities = 190/364 (52%), Positives = 204/364 (56%), Gaps = 93/364 (25%)
 Frame = -3

Query: 836  SCSPISSSLGPRRIQVLAGSTRYLRPHGGLRSRRRCRYIGAQ----NSRFVLKASLDSQX 669
            SCSPISSSL PRR Q L+GST  LRP G L SRRRCR IG Q     SRFVL+ASLDSQ 
Sbjct: 16   SCSPISSSLVPRR-QFLSGSTHSLRPPG-LHSRRRCRNIGFQFGSNTSRFVLRASLDSQT 73

Query: 668  XXXXXXXXXXXALTIVFFEFSKRNTNANAKFKEENL------------------------ 561
                        LT+VF EFSKRNTNANAKFKEE                          
Sbjct: 74   VVFASVVTISA-LTVVFLEFSKRNTNANAKFKEEEKSVKIQMKEVTKVSNEHEDGGTDVL 132

Query: 560  --QGTKMSNILTTEEVR------------------APGPHANTESDAVPSSFVAESNNIY 441
               GT +     T  +                   A  P+A+TESDAVPSSFVAE NNIY
Sbjct: 133  QHDGTDLIQTFVTNNIESVDTNQLAPSSNGSLTLGASVPNAHTESDAVPSSFVAELNNIY 192

Query: 440  ---------------------------------------------LQEHLHETKMSNILT 396
                                                         LQEHLHETKMSNILT
Sbjct: 193  LQENLRMTKMSNILTTEEVREPEPIAHTESDAVPSSFVEESKNICLQEHLHETKMSNILT 252

Query: 395  TEEVSSERSVDWFPAINIDKRIEETMKMDPELMRKDGCKKAHKLVAEDEVNIHNLIFSDS 216
            TEEVSSERSV  FPAINID R E+T KMD ELM KDGCKKAHK VAEDEV IHNLIF DS
Sbjct: 253  TEEVSSERSVALFPAINIDNRPEKTKKMDQELMTKDGCKKAHKFVAEDEVTIHNLIFRDS 312

Query: 215  ARKELYSFFEASTKGLNSQEALTSHTSLQHIGVFSAPSKVSSVQAEAFEEKRPHDIIKKG 36
             R++LYSFFEAS+K LN Q+ALTSH SLQ IG FS  SKV SV+AE FEEKR H   K+G
Sbjct: 313  TREDLYSFFEASSKSLNGQDALTSHASLQGIGAFSPASKVFSVRAEDFEEKRSHGCYKEG 372

Query: 35   HSTK 24
               K
Sbjct: 373  PFNK 376


>ref|XP_006359636.1| PREDICTED: pentatricopeptide repeat-containing protein MRL1,
           chloroplastic-like isoform X1 [Solanum tuberosum]
          Length = 1140

 Score =  263 bits (673), Expect = 5e-68
 Identities = 140/188 (74%), Positives = 151/188 (80%)
 Frame = -3

Query: 587 NAKFKEENLQGTKMSNILTTEEVRAPGPHANTESDAVPSSFVAESNNIYLQEHLHETKMS 408
           N  + +ENL+ TKMSNILTTEEVR P P A+TESDAVPSSFV ES NI LQEHLHETKMS
Sbjct: 220 NNIYLQENLRMTKMSNILTTEEVREPEPIAHTESDAVPSSFVEESKNICLQEHLHETKMS 279

Query: 407 NILTTEEVSSERSVDWFPAINIDKRIEETMKMDPELMRKDGCKKAHKLVAEDEVNIHNLI 228
           NILTTEEVSSERSV  FPAINID R E+T KMD ELM KDGCKKAHK VAEDEV IHNLI
Sbjct: 280 NILTTEEVSSERSVALFPAINIDNRPEKTKKMDQELMTKDGCKKAHKFVAEDEVTIHNLI 339

Query: 227 FSDSARKELYSFFEASTKGLNSQEALTSHTSLQHIGVFSAPSKVSSVQAEAFEEKRPHDI 48
           F DS R++LYSFFEAS+K LN Q+ALTSH SLQ IG FS  SKV SV+AE FEEKR H  
Sbjct: 340 FRDSTREDLYSFFEASSKSLNGQDALTSHASLQGIGAFSPASKVFSVRAEDFEEKRSHGC 399

Query: 47  IKKGHSTK 24
            K+G   K
Sbjct: 400 YKEGPFNK 407



 Score = 95.5 bits (236), Expect(2) = 1e-17
 Identities = 61/93 (65%), Positives = 64/93 (68%), Gaps = 4/93 (4%)
 Frame = -3

Query: 836 SCSPISSSLGPRRIQVLAGSTRYLRPHGGLRSRRRCRYIGAQ----NSRFVLKASLDSQX 669
           SCSPISSSL PRR Q L+GST  LRP G L SRRRCR IG Q     SRFVL+ASLDSQ 
Sbjct: 16  SCSPISSSLVPRR-QFLSGSTHSLRPPG-LHSRRRCRNIGFQFGSNTSRFVLRASLDSQT 73

Query: 668 XXXXXXXXXXXALTIVFFEFSKRNTNANAKFKE 570
                       LT+VF EFSKRNTNANAKFKE
Sbjct: 74  VVFASVVTISA-LTVVFLEFSKRNTNANAKFKE 105



 Score = 21.2 bits (43), Expect(2) = 1e-17
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -1

Query: 859 IFYPKPHNLVLQS 821
           IF PKPH L L S
Sbjct: 4   IFSPKPHTLSLLS 16


>ref|XP_004231448.1| PREDICTED: pentatricopeptide repeat-containing protein At4g34830,
           chloroplastic-like [Solanum lycopersicum]
          Length = 1182

 Score =  244 bits (622), Expect = 4e-62
 Identities = 130/184 (70%), Positives = 144/184 (78%)
 Frame = -3

Query: 590 ANAKFKEENLQGTKMSNILTTEEVRAPGPHANTESDAVPSSFVAESNNIYLQEHLHETKM 411
           +N  + +ENL+ TKMSNILTTEEVR P P A+TESDAVPSSF+ ES NI LQEHLHETKM
Sbjct: 261 SNNIYLQENLRTTKMSNILTTEEVREPEPIAHTESDAVPSSFMEESKNINLQEHLHETKM 320

Query: 410 SNILTTEEVSSERSVDWFPAINIDKRIEETMKMDPELMRKDGCKKAHKLVAEDEVNIHNL 231
           SNILTTEEVSSERSV  FP INID R E+T  MD ELM KD  KKAH+ VAEDEV IHNL
Sbjct: 321 SNILTTEEVSSERSVALFPTINIDNRTEKTKIMDQELMMKDELKKAHRFVAEDEVIIHNL 380

Query: 230 IFSDSARKELYSFFEASTKGLNSQEALTSHTSLQHIGVFSAPSKVSSVQAEAFEEKRPHD 51
           IF DS R++LYSFF AS+K LN Q+ALTSH S Q IG FS PSK  SV+AE FEEKR H 
Sbjct: 381 IFRDSTREDLYSFFGASSKSLNGQDALTSHASRQGIGTFSPPSKAFSVRAEDFEEKRSHG 440

Query: 50  IIKK 39
             K+
Sbjct: 441 CYKE 444



 Score = 95.5 bits (236), Expect = 2e-17
 Identities = 61/93 (65%), Positives = 64/93 (68%), Gaps = 4/93 (4%)
 Frame = -3

Query: 836 SCSPISSSLGPRRIQVLAGSTRYLRPHGGLRSRRRCRYIGAQ----NSRFVLKASLDSQX 669
           SCSPISSSL PRR Q L+GST  LRP G L SRRRCR IG Q     SRFVL+ASLDSQ 
Sbjct: 13  SCSPISSSLVPRR-QFLSGSTHSLRPPG-LHSRRRCRNIGFQFGGNTSRFVLRASLDSQT 70

Query: 668 XXXXXXXXXXXALTIVFFEFSKRNTNANAKFKE 570
                       LT+VF EFSKRNTNANAKFKE
Sbjct: 71  VVFASVVTISA-LTVVFLEFSKRNTNANAKFKE 102



 Score = 68.9 bits (167), Expect = 2e-09
 Identities = 33/41 (80%), Positives = 38/41 (92%)
 Frame = -3

Query: 506 PHANTESDAVPSSFVAESNNIYLQEHLHETKMSNILTTEEV 384
           P+ +TESDAVPSSFVA+SNNIYLQE++  TKMSNILTTEEV
Sbjct: 199 PNEHTESDAVPSSFVADSNNIYLQENIQTTKMSNILTTEEV 239